Multiple sequence alignment - TraesCS2B01G077600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G077600 chr2B 100.000 4433 0 0 1 4433 43160400 43155968 0.000000e+00 8187.0
1 TraesCS2B01G077600 chr2B 83.761 351 57 0 2644 2994 43054789 43054439 2.560000e-87 333.0
2 TraesCS2B01G077600 chr2B 82.173 359 57 7 2638 2992 42984627 42984272 7.210000e-78 302.0
3 TraesCS2B01G077600 chr2B 86.667 270 36 0 3182 3451 43053133 43052864 2.590000e-77 300.0
4 TraesCS2B01G077600 chr2B 83.451 284 43 4 3153 3435 43243882 43243602 1.220000e-65 261.0
5 TraesCS2B01G077600 chr2D 96.652 2778 75 7 1664 4433 27318611 27321378 0.000000e+00 4599.0
6 TraesCS2B01G077600 chr2D 91.684 1900 105 21 1664 3550 27276688 27278547 0.000000e+00 2584.0
7 TraesCS2B01G077600 chr2D 89.316 702 50 12 605 1298 27317917 27318601 0.000000e+00 857.0
8 TraesCS2B01G077600 chr2D 88.750 720 52 13 605 1298 27275962 27276678 0.000000e+00 854.0
9 TraesCS2B01G077600 chr2D 83.803 852 105 17 3592 4433 27303501 27304329 0.000000e+00 778.0
10 TraesCS2B01G077600 chr2D 84.330 351 55 0 2644 2994 27333638 27333988 1.180000e-90 344.0
11 TraesCS2B01G077600 chr2D 84.503 342 52 1 2653 2993 27501478 27501137 1.980000e-88 337.0
12 TraesCS2B01G077600 chr2D 83.099 284 44 4 3153 3435 27521394 27521114 5.690000e-64 255.0
13 TraesCS2B01G077600 chr2D 82.800 250 43 0 1791 2040 27495285 27495036 1.600000e-54 224.0
14 TraesCS2B01G077600 chr2D 88.679 159 10 6 444 601 27275763 27275914 2.110000e-43 187.0
15 TraesCS2B01G077600 chr2D 85.965 114 7 5 489 601 27317759 27317864 3.620000e-21 113.0
16 TraesCS2B01G077600 chr2A 88.012 3128 268 46 1348 4433 29601362 29604424 0.000000e+00 3600.0
17 TraesCS2B01G077600 chr2A 96.547 2085 63 4 1617 3694 29617197 29619279 0.000000e+00 3443.0
18 TraesCS2B01G077600 chr2A 92.175 754 44 9 3690 4433 29640983 29641731 0.000000e+00 1051.0
19 TraesCS2B01G077600 chr2A 89.382 744 54 11 605 1337 29616295 29617024 0.000000e+00 913.0
20 TraesCS2B01G077600 chr2A 89.848 660 50 7 659 1309 29600273 29600924 0.000000e+00 832.0
21 TraesCS2B01G077600 chr2A 83.569 353 54 4 2644 2994 29654876 29655226 1.190000e-85 327.0
22 TraesCS2B01G077600 chr2A 83.099 284 44 4 3153 3435 29732833 29732553 5.690000e-64 255.0
23 TraesCS2B01G077600 chr2A 80.442 317 48 9 1 309 183904979 183905289 3.450000e-56 230.0
24 TraesCS2B01G077600 chr2A 82.129 263 47 0 1031 1293 29652979 29653241 4.460000e-55 226.0
25 TraesCS2B01G077600 chr2A 84.848 99 6 6 491 588 29616143 29616233 1.700000e-14 91.6
26 TraesCS2B01G077600 chr7D 81.699 306 40 10 11 311 544369562 544369268 1.590000e-59 241.0
27 TraesCS2B01G077600 chr5D 81.818 297 36 14 24 309 427224192 427224481 2.670000e-57 233.0
28 TraesCS2B01G077600 chr5A 81.290 310 35 15 11 309 28656945 28656648 3.450000e-56 230.0
29 TraesCS2B01G077600 chr4A 79.814 322 53 9 1 315 647183866 647183550 1.600000e-54 224.0
30 TraesCS2B01G077600 chr4D 80.251 319 43 15 5 311 10966233 10965923 5.770000e-54 222.0
31 TraesCS2B01G077600 chr3B 80.000 315 51 8 1 309 117949675 117949983 5.770000e-54 222.0
32 TraesCS2B01G077600 chr1B 79.612 309 53 5 1 309 503814212 503814510 3.470000e-51 213.0
33 TraesCS2B01G077600 chr5B 78.090 356 55 18 7 354 491227548 491227888 2.090000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G077600 chr2B 43155968 43160400 4432 True 8187.000000 8187 100.000000 1 4433 1 chr2B.!!$R2 4432
1 TraesCS2B01G077600 chr2B 43052864 43054789 1925 True 316.500000 333 85.214000 2644 3451 2 chr2B.!!$R4 807
2 TraesCS2B01G077600 chr2D 27317759 27321378 3619 False 1856.333333 4599 90.644333 489 4433 3 chr2D.!!$F4 3944
3 TraesCS2B01G077600 chr2D 27275763 27278547 2784 False 1208.333333 2584 89.704333 444 3550 3 chr2D.!!$F3 3106
4 TraesCS2B01G077600 chr2D 27303501 27304329 828 False 778.000000 778 83.803000 3592 4433 1 chr2D.!!$F1 841
5 TraesCS2B01G077600 chr2A 29600273 29604424 4151 False 2216.000000 3600 88.930000 659 4433 2 chr2A.!!$F3 3774
6 TraesCS2B01G077600 chr2A 29616143 29619279 3136 False 1482.533333 3443 90.259000 491 3694 3 chr2A.!!$F4 3203
7 TraesCS2B01G077600 chr2A 29640983 29641731 748 False 1051.000000 1051 92.175000 3690 4433 1 chr2A.!!$F1 743
8 TraesCS2B01G077600 chr2A 29652979 29655226 2247 False 276.500000 327 82.849000 1031 2994 2 chr2A.!!$F5 1963

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 407 0.034059 CGAGAAGTCCAACCAGCTGT 59.966 55.000 13.81 0.00 0.00 4.4 F
815 872 0.179158 GAGAACCTCGAACGAGCCTC 60.179 60.000 17.21 16.77 40.69 4.7 F
1306 1444 0.806102 CCAGGTGCGGTCTCGTATTG 60.806 60.000 0.00 0.00 38.89 1.9 F
2944 3908 1.303806 CCCAGTAAAACCACGGGGG 60.304 63.158 9.50 0.00 46.73 5.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1266 1346 0.768221 AGAAGCCCCAGTCCTCACAA 60.768 55.000 0.00 0.00 0.00 3.33 R
2467 3414 2.035832 GCTTGTACTTTGTTGGGCACAT 59.964 45.455 0.00 0.00 34.43 3.21 R
3252 5444 4.752101 ACTTGAAATGCTGATACGGATAGC 59.248 41.667 3.05 3.05 37.93 2.97 R
4385 6602 1.212455 GGCCGGAAGTTGCAAAAACG 61.212 55.000 5.05 3.83 0.00 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.670401 CGGAAGCAAAACTGTGACTC 57.330 50.000 0.00 0.00 0.00 3.36
36 37 2.213499 CGGAAGCAAAACTGTGACTCT 58.787 47.619 0.00 0.00 0.00 3.24
37 38 2.221981 CGGAAGCAAAACTGTGACTCTC 59.778 50.000 0.00 0.00 0.00 3.20
38 39 2.221981 GGAAGCAAAACTGTGACTCTCG 59.778 50.000 0.00 0.00 0.00 4.04
39 40 1.221414 AGCAAAACTGTGACTCTCGC 58.779 50.000 0.00 0.00 0.00 5.03
40 41 0.111089 GCAAAACTGTGACTCTCGCG 60.111 55.000 0.00 0.00 0.00 5.87
41 42 1.487482 CAAAACTGTGACTCTCGCGA 58.513 50.000 9.26 9.26 0.00 5.87
42 43 1.858458 CAAAACTGTGACTCTCGCGAA 59.142 47.619 11.33 0.02 0.00 4.70
43 44 2.218953 AAACTGTGACTCTCGCGAAA 57.781 45.000 11.33 0.00 0.00 3.46
44 45 1.772182 AACTGTGACTCTCGCGAAAG 58.228 50.000 11.33 9.68 0.00 2.62
45 46 0.952280 ACTGTGACTCTCGCGAAAGA 59.048 50.000 17.91 7.21 0.00 2.52
46 47 1.337071 ACTGTGACTCTCGCGAAAGAA 59.663 47.619 17.91 0.50 0.00 2.52
47 48 2.223735 ACTGTGACTCTCGCGAAAGAAA 60.224 45.455 17.91 0.10 0.00 2.52
48 49 2.794910 CTGTGACTCTCGCGAAAGAAAA 59.205 45.455 17.91 0.00 0.00 2.29
49 50 3.191669 TGTGACTCTCGCGAAAGAAAAA 58.808 40.909 17.91 0.00 0.00 1.94
81 82 9.617975 ATTTTTCACGCAAAGAAAATTTTTGAA 57.382 22.222 4.63 6.39 42.54 2.69
82 83 8.652592 TTTTCACGCAAAGAAAATTTTTGAAG 57.347 26.923 4.63 1.16 39.34 3.02
83 84 7.588143 TTCACGCAAAGAAAATTTTTGAAGA 57.412 28.000 4.63 0.00 37.65 2.87
84 85 7.588143 TCACGCAAAGAAAATTTTTGAAGAA 57.412 28.000 4.63 0.00 37.65 2.52
85 86 8.195617 TCACGCAAAGAAAATTTTTGAAGAAT 57.804 26.923 4.63 0.00 37.65 2.40
86 87 8.663911 TCACGCAAAGAAAATTTTTGAAGAATT 58.336 25.926 4.63 0.00 37.65 2.17
87 88 9.276397 CACGCAAAGAAAATTTTTGAAGAATTT 57.724 25.926 4.63 1.08 37.65 1.82
88 89 9.838975 ACGCAAAGAAAATTTTTGAAGAATTTT 57.161 22.222 16.07 16.07 44.78 1.82
114 115 7.561021 TTTTGGTCCAAAAATTAAGAAAGCC 57.439 32.000 24.52 0.00 39.85 4.35
115 116 5.878406 TGGTCCAAAAATTAAGAAAGCCA 57.122 34.783 0.00 0.00 0.00 4.75
116 117 6.240549 TGGTCCAAAAATTAAGAAAGCCAA 57.759 33.333 0.00 0.00 0.00 4.52
117 118 6.287525 TGGTCCAAAAATTAAGAAAGCCAAG 58.712 36.000 0.00 0.00 0.00 3.61
118 119 6.126911 TGGTCCAAAAATTAAGAAAGCCAAGT 60.127 34.615 0.00 0.00 0.00 3.16
119 120 6.202762 GGTCCAAAAATTAAGAAAGCCAAGTG 59.797 38.462 0.00 0.00 0.00 3.16
120 121 6.202762 GTCCAAAAATTAAGAAAGCCAAGTGG 59.797 38.462 0.00 0.00 38.53 4.00
121 122 6.098982 TCCAAAAATTAAGAAAGCCAAGTGGA 59.901 34.615 0.18 0.00 37.39 4.02
122 123 6.424812 CCAAAAATTAAGAAAGCCAAGTGGAG 59.575 38.462 0.18 0.00 37.39 3.86
123 124 6.976934 AAAATTAAGAAAGCCAAGTGGAGA 57.023 33.333 0.18 0.00 37.39 3.71
124 125 6.976934 AAATTAAGAAAGCCAAGTGGAGAA 57.023 33.333 0.18 0.00 37.39 2.87
125 126 5.966742 ATTAAGAAAGCCAAGTGGAGAAC 57.033 39.130 0.18 0.00 37.39 3.01
126 127 2.278332 AGAAAGCCAAGTGGAGAACC 57.722 50.000 0.18 0.00 37.39 3.62
127 128 0.875059 GAAAGCCAAGTGGAGAACCG 59.125 55.000 0.18 0.00 39.42 4.44
128 129 0.472471 AAAGCCAAGTGGAGAACCGA 59.528 50.000 0.18 0.00 39.42 4.69
129 130 0.472471 AAGCCAAGTGGAGAACCGAA 59.528 50.000 0.18 0.00 39.42 4.30
130 131 0.472471 AGCCAAGTGGAGAACCGAAA 59.528 50.000 0.18 0.00 39.42 3.46
131 132 0.591659 GCCAAGTGGAGAACCGAAAC 59.408 55.000 0.18 0.00 39.42 2.78
132 133 0.865769 CCAAGTGGAGAACCGAAACG 59.134 55.000 0.00 0.00 39.42 3.60
133 134 1.578583 CAAGTGGAGAACCGAAACGT 58.421 50.000 0.00 0.00 39.42 3.99
134 135 1.525619 CAAGTGGAGAACCGAAACGTC 59.474 52.381 0.00 0.00 39.42 4.34
162 163 8.914328 AAAAATCCGAAAAGAACGTTTAAAGA 57.086 26.923 0.46 0.00 0.00 2.52
163 164 8.556517 AAAATCCGAAAAGAACGTTTAAAGAG 57.443 30.769 0.46 0.00 0.00 2.85
164 165 5.086888 TCCGAAAAGAACGTTTAAAGAGC 57.913 39.130 0.46 0.00 0.00 4.09
165 166 4.024641 TCCGAAAAGAACGTTTAAAGAGCC 60.025 41.667 0.46 0.00 0.00 4.70
166 167 3.898361 CGAAAAGAACGTTTAAAGAGCCG 59.102 43.478 0.46 0.00 0.00 5.52
167 168 4.318263 CGAAAAGAACGTTTAAAGAGCCGA 60.318 41.667 0.46 0.00 0.00 5.54
168 169 5.488645 AAAAGAACGTTTAAAGAGCCGAA 57.511 34.783 0.46 0.00 0.00 4.30
169 170 5.488645 AAAGAACGTTTAAAGAGCCGAAA 57.511 34.783 0.46 0.00 0.00 3.46
170 171 5.488645 AAGAACGTTTAAAGAGCCGAAAA 57.511 34.783 0.46 0.00 0.00 2.29
171 172 4.840911 AGAACGTTTAAAGAGCCGAAAAC 58.159 39.130 0.46 0.00 0.00 2.43
173 174 1.967235 CGTTTAAAGAGCCGAAAACGC 59.033 47.619 6.30 0.00 44.94 4.84
174 175 2.349155 CGTTTAAAGAGCCGAAAACGCT 60.349 45.455 6.30 0.00 44.94 5.07
175 176 3.624900 GTTTAAAGAGCCGAAAACGCTT 58.375 40.909 0.00 0.00 36.48 4.68
176 177 2.961522 TAAAGAGCCGAAAACGCTTG 57.038 45.000 0.00 0.00 36.48 4.01
177 178 0.317854 AAAGAGCCGAAAACGCTTGC 60.318 50.000 0.00 0.00 36.48 4.01
178 179 2.443957 AAGAGCCGAAAACGCTTGCG 62.444 55.000 13.70 13.70 36.48 4.85
179 180 2.950172 GAGCCGAAAACGCTTGCGA 61.950 57.895 22.03 0.00 35.37 5.10
180 181 2.051703 GCCGAAAACGCTTGCGAA 60.052 55.556 22.03 0.00 35.37 4.70
181 182 1.655959 GCCGAAAACGCTTGCGAAA 60.656 52.632 22.03 0.00 35.37 3.46
182 183 1.203600 GCCGAAAACGCTTGCGAAAA 61.204 50.000 22.03 0.00 35.37 2.29
183 184 1.192793 CCGAAAACGCTTGCGAAAAA 58.807 45.000 22.03 0.00 35.37 1.94
184 185 1.784283 CCGAAAACGCTTGCGAAAAAT 59.216 42.857 22.03 2.97 35.37 1.82
185 186 2.974536 CCGAAAACGCTTGCGAAAAATA 59.025 40.909 22.03 0.00 35.37 1.40
186 187 3.422546 CCGAAAACGCTTGCGAAAAATAA 59.577 39.130 22.03 0.00 35.37 1.40
187 188 4.085517 CCGAAAACGCTTGCGAAAAATAAA 60.086 37.500 22.03 0.00 35.37 1.40
188 189 5.416197 CGAAAACGCTTGCGAAAAATAAAA 58.584 33.333 22.03 0.00 35.37 1.52
189 190 5.891571 CGAAAACGCTTGCGAAAAATAAAAA 59.108 32.000 22.03 0.00 35.37 1.94
190 191 6.568238 CGAAAACGCTTGCGAAAAATAAAAAT 59.432 30.769 22.03 0.00 35.37 1.82
191 192 7.732156 CGAAAACGCTTGCGAAAAATAAAAATA 59.268 29.630 22.03 0.00 35.37 1.40
192 193 9.359318 GAAAACGCTTGCGAAAAATAAAAATAA 57.641 25.926 22.03 0.00 0.00 1.40
193 194 9.704098 AAAACGCTTGCGAAAAATAAAAATAAA 57.296 22.222 22.03 0.00 0.00 1.40
194 195 9.704098 AAACGCTTGCGAAAAATAAAAATAAAA 57.296 22.222 22.03 0.00 0.00 1.52
195 196 9.704098 AACGCTTGCGAAAAATAAAAATAAAAA 57.296 22.222 22.03 0.00 0.00 1.94
221 222 3.522731 CGGAGGGAGCGTCCAGAG 61.523 72.222 6.41 0.00 38.64 3.35
222 223 3.844090 GGAGGGAGCGTCCAGAGC 61.844 72.222 6.41 0.00 38.64 4.09
223 224 4.200283 GAGGGAGCGTCCAGAGCG 62.200 72.222 6.41 0.00 38.64 5.03
231 232 4.702081 GTCCAGAGCGCGACACGT 62.702 66.667 12.10 0.00 46.11 4.49
232 233 4.700365 TCCAGAGCGCGACACGTG 62.700 66.667 15.48 15.48 46.11 4.49
233 234 4.700365 CCAGAGCGCGACACGTGA 62.700 66.667 25.01 0.00 46.11 4.35
234 235 3.461982 CAGAGCGCGACACGTGAC 61.462 66.667 25.01 16.07 46.11 3.67
247 248 4.803426 GTGACGGGCGGCTGAGAG 62.803 72.222 26.40 6.12 0.00 3.20
255 256 3.043713 CGGCTGAGAGCGTGCAAA 61.044 61.111 0.00 0.00 43.62 3.68
256 257 2.606961 CGGCTGAGAGCGTGCAAAA 61.607 57.895 0.00 0.00 43.62 2.44
257 258 1.878775 GGCTGAGAGCGTGCAAAAT 59.121 52.632 0.00 0.00 43.62 1.82
258 259 0.455633 GGCTGAGAGCGTGCAAAATG 60.456 55.000 0.00 0.00 43.62 2.32
259 260 0.455633 GCTGAGAGCGTGCAAAATGG 60.456 55.000 0.00 0.00 0.00 3.16
260 261 0.455633 CTGAGAGCGTGCAAAATGGC 60.456 55.000 0.00 0.00 0.00 4.40
261 262 1.512734 GAGAGCGTGCAAAATGGCG 60.513 57.895 0.00 0.00 36.28 5.69
264 265 3.472298 GCGTGCAAAATGGCGCTG 61.472 61.111 7.64 0.00 45.48 5.18
265 266 2.254951 CGTGCAAAATGGCGCTGA 59.745 55.556 7.64 0.00 41.99 4.26
266 267 1.153978 CGTGCAAAATGGCGCTGAT 60.154 52.632 7.64 0.00 41.99 2.90
267 268 1.135699 CGTGCAAAATGGCGCTGATC 61.136 55.000 7.64 0.00 41.99 2.92
268 269 1.135699 GTGCAAAATGGCGCTGATCG 61.136 55.000 7.64 0.00 40.99 3.69
269 270 1.137404 GCAAAATGGCGCTGATCGT 59.863 52.632 7.64 0.00 41.07 3.73
270 271 0.456653 GCAAAATGGCGCTGATCGTT 60.457 50.000 7.64 0.00 41.07 3.85
271 272 1.261989 CAAAATGGCGCTGATCGTTG 58.738 50.000 7.64 4.89 41.07 4.10
272 273 0.881118 AAAATGGCGCTGATCGTTGT 59.119 45.000 7.64 0.00 41.07 3.32
273 274 0.168788 AAATGGCGCTGATCGTTGTG 59.831 50.000 7.64 0.00 41.07 3.33
274 275 0.673333 AATGGCGCTGATCGTTGTGA 60.673 50.000 7.64 0.00 41.07 3.58
275 276 1.086067 ATGGCGCTGATCGTTGTGAG 61.086 55.000 7.64 0.00 41.07 3.51
276 277 2.456119 GGCGCTGATCGTTGTGAGG 61.456 63.158 7.64 0.00 41.07 3.86
277 278 3.084579 CGCTGATCGTTGTGAGGC 58.915 61.111 0.00 0.00 0.00 4.70
278 279 1.446792 CGCTGATCGTTGTGAGGCT 60.447 57.895 0.00 0.00 0.00 4.58
279 280 1.016130 CGCTGATCGTTGTGAGGCTT 61.016 55.000 0.00 0.00 0.00 4.35
280 281 0.723981 GCTGATCGTTGTGAGGCTTC 59.276 55.000 0.00 0.00 0.00 3.86
281 282 1.363744 CTGATCGTTGTGAGGCTTCC 58.636 55.000 0.00 0.00 0.00 3.46
282 283 0.389817 TGATCGTTGTGAGGCTTCCG 60.390 55.000 0.00 0.00 0.00 4.30
283 284 0.108804 GATCGTTGTGAGGCTTCCGA 60.109 55.000 0.00 0.00 0.00 4.55
284 285 0.320374 ATCGTTGTGAGGCTTCCGAA 59.680 50.000 0.00 0.00 0.00 4.30
285 286 0.105224 TCGTTGTGAGGCTTCCGAAA 59.895 50.000 0.00 0.00 0.00 3.46
286 287 0.512952 CGTTGTGAGGCTTCCGAAAG 59.487 55.000 0.00 0.00 35.47 2.62
287 288 1.872237 CGTTGTGAGGCTTCCGAAAGA 60.872 52.381 0.00 0.00 34.14 2.52
288 289 1.801178 GTTGTGAGGCTTCCGAAAGAG 59.199 52.381 0.00 0.00 34.14 2.85
289 290 0.320771 TGTGAGGCTTCCGAAAGAGC 60.321 55.000 0.00 0.00 34.14 4.09
290 291 1.079819 TGAGGCTTCCGAAAGAGCG 60.080 57.895 0.00 0.00 34.14 5.03
291 292 2.435059 AGGCTTCCGAAAGAGCGC 60.435 61.111 0.00 0.00 34.14 5.92
292 293 2.435059 GGCTTCCGAAAGAGCGCT 60.435 61.111 11.27 11.27 34.14 5.92
293 294 2.456948 GGCTTCCGAAAGAGCGCTC 61.457 63.158 30.01 30.01 34.14 5.03
294 295 2.793322 GCTTCCGAAAGAGCGCTCG 61.793 63.158 30.39 19.87 34.14 5.03
295 296 1.444553 CTTCCGAAAGAGCGCTCGT 60.445 57.895 30.39 25.69 34.14 4.18
296 297 1.406970 CTTCCGAAAGAGCGCTCGTC 61.407 60.000 30.39 27.60 34.14 4.20
297 298 2.126463 CCGAAAGAGCGCTCGTCA 60.126 61.111 30.74 0.00 33.17 4.35
298 299 1.733041 CCGAAAGAGCGCTCGTCAA 60.733 57.895 30.74 0.00 33.17 3.18
299 300 1.412606 CGAAAGAGCGCTCGTCAAC 59.587 57.895 30.74 21.80 34.09 3.18
300 301 1.004277 CGAAAGAGCGCTCGTCAACT 61.004 55.000 30.74 17.11 34.09 3.16
301 302 1.728179 CGAAAGAGCGCTCGTCAACTA 60.728 52.381 30.74 0.00 34.09 2.24
302 303 1.914700 GAAAGAGCGCTCGTCAACTAG 59.085 52.381 30.39 0.00 34.09 2.57
303 304 0.882474 AAGAGCGCTCGTCAACTAGT 59.118 50.000 30.39 8.02 34.09 2.57
304 305 0.882474 AGAGCGCTCGTCAACTAGTT 59.118 50.000 30.39 7.23 34.09 2.24
305 306 0.985549 GAGCGCTCGTCAACTAGTTG 59.014 55.000 26.60 26.60 41.71 3.16
306 307 1.009389 AGCGCTCGTCAACTAGTTGC 61.009 55.000 27.49 20.92 40.24 4.17
307 308 1.009389 GCGCTCGTCAACTAGTTGCT 61.009 55.000 27.49 0.00 40.24 3.91
308 309 0.985549 CGCTCGTCAACTAGTTGCTC 59.014 55.000 27.49 20.75 40.24 4.26
309 310 1.401670 CGCTCGTCAACTAGTTGCTCT 60.402 52.381 27.49 0.00 40.24 4.09
310 311 2.255316 GCTCGTCAACTAGTTGCTCTC 58.745 52.381 27.49 16.63 40.24 3.20
311 312 2.510874 CTCGTCAACTAGTTGCTCTCG 58.489 52.381 27.49 24.69 40.24 4.04
312 313 1.878088 TCGTCAACTAGTTGCTCTCGT 59.122 47.619 27.49 0.00 40.24 4.18
313 314 3.069289 TCGTCAACTAGTTGCTCTCGTA 58.931 45.455 27.49 8.59 40.24 3.43
314 315 3.688185 TCGTCAACTAGTTGCTCTCGTAT 59.312 43.478 27.49 0.00 40.24 3.06
315 316 4.872124 TCGTCAACTAGTTGCTCTCGTATA 59.128 41.667 27.49 7.19 40.24 1.47
316 317 5.352293 TCGTCAACTAGTTGCTCTCGTATAA 59.648 40.000 27.49 6.49 40.24 0.98
317 318 6.025896 CGTCAACTAGTTGCTCTCGTATAAA 58.974 40.000 27.49 5.99 40.24 1.40
318 319 6.194876 CGTCAACTAGTTGCTCTCGTATAAAG 59.805 42.308 27.49 7.72 40.24 1.85
319 320 6.020520 GTCAACTAGTTGCTCTCGTATAAAGC 60.021 42.308 27.49 1.50 40.24 3.51
320 321 5.578005 ACTAGTTGCTCTCGTATAAAGCA 57.422 39.130 0.00 0.00 43.89 3.91
321 322 5.341617 ACTAGTTGCTCTCGTATAAAGCAC 58.658 41.667 0.00 0.00 45.15 4.40
322 323 3.522553 AGTTGCTCTCGTATAAAGCACC 58.477 45.455 0.00 0.00 45.15 5.01
323 324 3.056107 AGTTGCTCTCGTATAAAGCACCA 60.056 43.478 0.00 0.00 45.15 4.17
324 325 2.888594 TGCTCTCGTATAAAGCACCAC 58.111 47.619 0.00 0.00 40.91 4.16
325 326 2.496070 TGCTCTCGTATAAAGCACCACT 59.504 45.455 0.00 0.00 40.91 4.00
326 327 3.117046 GCTCTCGTATAAAGCACCACTC 58.883 50.000 0.00 0.00 36.06 3.51
327 328 3.364062 CTCTCGTATAAAGCACCACTCG 58.636 50.000 0.00 0.00 0.00 4.18
328 329 2.751259 TCTCGTATAAAGCACCACTCGT 59.249 45.455 0.00 0.00 0.00 4.18
329 330 3.106672 CTCGTATAAAGCACCACTCGTC 58.893 50.000 0.00 0.00 0.00 4.20
330 331 2.488937 TCGTATAAAGCACCACTCGTCA 59.511 45.455 0.00 0.00 0.00 4.35
331 332 3.057386 TCGTATAAAGCACCACTCGTCAA 60.057 43.478 0.00 0.00 0.00 3.18
332 333 3.676172 CGTATAAAGCACCACTCGTCAAA 59.324 43.478 0.00 0.00 0.00 2.69
333 334 4.150980 CGTATAAAGCACCACTCGTCAAAA 59.849 41.667 0.00 0.00 0.00 2.44
334 335 5.333492 CGTATAAAGCACCACTCGTCAAAAA 60.333 40.000 0.00 0.00 0.00 1.94
369 370 8.980481 AAAAAGTTAAGAGGACTGATTCTCAA 57.020 30.769 0.00 0.00 32.76 3.02
370 371 8.980481 AAAAGTTAAGAGGACTGATTCTCAAA 57.020 30.769 0.00 0.00 32.76 2.69
371 372 8.980481 AAAGTTAAGAGGACTGATTCTCAAAA 57.020 30.769 0.00 0.00 32.76 2.44
372 373 8.614469 AAGTTAAGAGGACTGATTCTCAAAAG 57.386 34.615 0.00 0.00 32.76 2.27
373 374 7.740805 AGTTAAGAGGACTGATTCTCAAAAGT 58.259 34.615 0.00 0.00 32.76 2.66
374 375 8.871125 AGTTAAGAGGACTGATTCTCAAAAGTA 58.129 33.333 0.00 0.00 32.76 2.24
375 376 9.490379 GTTAAGAGGACTGATTCTCAAAAGTAA 57.510 33.333 0.00 0.00 32.76 2.24
377 378 8.980481 AAGAGGACTGATTCTCAAAAGTAAAA 57.020 30.769 0.00 0.00 32.76 1.52
378 379 8.980481 AGAGGACTGATTCTCAAAAGTAAAAA 57.020 30.769 0.00 0.00 32.76 1.94
397 398 2.787473 AAATGATGCCGAGAAGTCCA 57.213 45.000 0.00 0.00 0.00 4.02
398 399 2.787473 AATGATGCCGAGAAGTCCAA 57.213 45.000 0.00 0.00 0.00 3.53
399 400 2.029838 ATGATGCCGAGAAGTCCAAC 57.970 50.000 0.00 0.00 0.00 3.77
400 401 0.036388 TGATGCCGAGAAGTCCAACC 60.036 55.000 0.00 0.00 0.00 3.77
401 402 0.036388 GATGCCGAGAAGTCCAACCA 60.036 55.000 0.00 0.00 0.00 3.67
402 403 0.036010 ATGCCGAGAAGTCCAACCAG 60.036 55.000 0.00 0.00 0.00 4.00
403 404 2.035442 GCCGAGAAGTCCAACCAGC 61.035 63.158 0.00 0.00 0.00 4.85
404 405 1.674057 CCGAGAAGTCCAACCAGCT 59.326 57.895 0.00 0.00 0.00 4.24
405 406 0.671781 CCGAGAAGTCCAACCAGCTG 60.672 60.000 6.78 6.78 0.00 4.24
406 407 0.034059 CGAGAAGTCCAACCAGCTGT 59.966 55.000 13.81 0.00 0.00 4.40
407 408 1.802069 GAGAAGTCCAACCAGCTGTC 58.198 55.000 13.81 0.41 0.00 3.51
408 409 0.034059 AGAAGTCCAACCAGCTGTCG 59.966 55.000 13.81 0.00 0.00 4.35
409 410 0.249911 GAAGTCCAACCAGCTGTCGT 60.250 55.000 13.81 0.70 0.00 4.34
410 411 0.180406 AAGTCCAACCAGCTGTCGTT 59.820 50.000 13.81 7.77 0.00 3.85
411 412 0.532862 AGTCCAACCAGCTGTCGTTG 60.533 55.000 22.02 22.02 39.25 4.10
412 413 0.531974 GTCCAACCAGCTGTCGTTGA 60.532 55.000 27.47 15.79 41.53 3.18
413 414 0.179234 TCCAACCAGCTGTCGTTGAA 59.821 50.000 27.47 12.63 41.53 2.69
414 415 1.202758 TCCAACCAGCTGTCGTTGAAT 60.203 47.619 27.47 0.00 41.53 2.57
415 416 1.608590 CCAACCAGCTGTCGTTGAATT 59.391 47.619 27.47 3.53 41.53 2.17
416 417 2.605338 CCAACCAGCTGTCGTTGAATTG 60.605 50.000 27.47 13.36 41.53 2.32
417 418 0.593128 ACCAGCTGTCGTTGAATTGC 59.407 50.000 13.81 0.00 0.00 3.56
418 419 0.592637 CCAGCTGTCGTTGAATTGCA 59.407 50.000 13.81 0.00 0.00 4.08
419 420 1.400629 CCAGCTGTCGTTGAATTGCAG 60.401 52.381 13.81 0.00 0.00 4.41
420 421 1.532437 CAGCTGTCGTTGAATTGCAGA 59.468 47.619 5.25 0.00 0.00 4.26
421 422 2.031769 CAGCTGTCGTTGAATTGCAGAA 60.032 45.455 5.25 0.00 0.00 3.02
422 423 2.031682 AGCTGTCGTTGAATTGCAGAAC 60.032 45.455 0.00 0.00 0.00 3.01
423 424 2.918131 GCTGTCGTTGAATTGCAGAACC 60.918 50.000 0.00 0.00 0.00 3.62
424 425 1.606668 TGTCGTTGAATTGCAGAACCC 59.393 47.619 0.00 0.00 0.00 4.11
425 426 1.606668 GTCGTTGAATTGCAGAACCCA 59.393 47.619 0.00 0.00 0.00 4.51
426 427 1.606668 TCGTTGAATTGCAGAACCCAC 59.393 47.619 0.00 0.00 0.00 4.61
427 428 1.608590 CGTTGAATTGCAGAACCCACT 59.391 47.619 0.00 0.00 0.00 4.00
428 429 2.350772 CGTTGAATTGCAGAACCCACTC 60.351 50.000 0.00 0.00 0.00 3.51
429 430 2.887152 GTTGAATTGCAGAACCCACTCT 59.113 45.455 0.00 0.00 0.00 3.24
430 431 2.507484 TGAATTGCAGAACCCACTCTG 58.493 47.619 0.00 0.00 44.82 3.35
431 432 2.106338 TGAATTGCAGAACCCACTCTGA 59.894 45.455 4.81 0.00 44.82 3.27
432 433 2.957402 ATTGCAGAACCCACTCTGAA 57.043 45.000 4.81 0.00 44.82 3.02
433 434 2.727123 TTGCAGAACCCACTCTGAAA 57.273 45.000 4.81 0.00 44.82 2.69
434 435 1.967319 TGCAGAACCCACTCTGAAAC 58.033 50.000 4.81 0.00 44.82 2.78
435 436 1.239347 GCAGAACCCACTCTGAAACC 58.761 55.000 4.81 0.00 44.82 3.27
436 437 1.476833 GCAGAACCCACTCTGAAACCA 60.477 52.381 4.81 0.00 44.82 3.67
437 438 2.222027 CAGAACCCACTCTGAAACCAC 58.778 52.381 0.00 0.00 44.82 4.16
438 439 1.843851 AGAACCCACTCTGAAACCACA 59.156 47.619 0.00 0.00 0.00 4.17
439 440 2.158755 AGAACCCACTCTGAAACCACAG 60.159 50.000 0.00 0.00 39.02 3.66
440 441 1.213296 ACCCACTCTGAAACCACAGT 58.787 50.000 0.00 0.00 38.79 3.55
441 442 1.134098 ACCCACTCTGAAACCACAGTG 60.134 52.381 0.00 0.00 38.79 3.66
442 443 1.597742 CCACTCTGAAACCACAGTGG 58.402 55.000 18.93 18.93 45.02 4.00
526 528 3.184581 GCGTTCGTCTGAAACTCTGAATT 59.815 43.478 0.00 0.00 35.46 2.17
527 529 4.384846 GCGTTCGTCTGAAACTCTGAATTA 59.615 41.667 0.00 0.00 35.46 1.40
533 535 5.389516 CGTCTGAAACTCTGAATTAAACGGG 60.390 44.000 0.00 0.00 0.00 5.28
534 536 5.001232 TCTGAAACTCTGAATTAAACGGGG 58.999 41.667 0.00 0.00 0.00 5.73
536 538 2.871096 ACTCTGAATTAAACGGGGCA 57.129 45.000 0.00 0.00 0.00 5.36
537 539 2.433436 ACTCTGAATTAAACGGGGCAC 58.567 47.619 0.00 0.00 0.00 5.01
538 540 2.224670 ACTCTGAATTAAACGGGGCACA 60.225 45.455 0.00 0.00 0.00 4.57
539 541 2.156098 TCTGAATTAAACGGGGCACAC 58.844 47.619 0.00 0.00 0.00 3.82
540 542 1.201414 CTGAATTAAACGGGGCACACC 59.799 52.381 0.00 0.00 39.11 4.16
541 543 1.202952 TGAATTAAACGGGGCACACCT 60.203 47.619 0.00 0.00 40.03 4.00
542 544 2.040012 TGAATTAAACGGGGCACACCTA 59.960 45.455 0.00 0.00 40.03 3.08
543 545 2.413310 ATTAAACGGGGCACACCTAG 57.587 50.000 0.00 0.00 40.03 3.02
544 546 0.321830 TTAAACGGGGCACACCTAGC 60.322 55.000 0.00 0.00 40.03 3.42
601 603 1.428448 TCACTTTGATGTTCCGAGCG 58.572 50.000 0.00 0.00 0.00 5.03
602 604 1.148310 CACTTTGATGTTCCGAGCGT 58.852 50.000 0.00 0.00 0.00 5.07
603 605 1.531149 CACTTTGATGTTCCGAGCGTT 59.469 47.619 0.00 0.00 0.00 4.84
628 679 0.323087 TGCAGACGTGGCCTCTACTA 60.323 55.000 3.32 0.00 0.00 1.82
629 680 0.382515 GCAGACGTGGCCTCTACTAG 59.617 60.000 3.32 0.00 0.00 2.57
630 681 1.752683 CAGACGTGGCCTCTACTAGT 58.247 55.000 3.32 0.00 0.00 2.57
631 682 2.915349 CAGACGTGGCCTCTACTAGTA 58.085 52.381 3.32 1.89 0.00 1.82
632 683 2.873472 CAGACGTGGCCTCTACTAGTAG 59.127 54.545 21.87 21.87 34.56 2.57
648 699 5.415221 ACTAGTAGATTTCTGCTGCAGTTC 58.585 41.667 27.24 21.02 39.29 3.01
653 704 3.188048 AGATTTCTGCTGCAGTTCGAAAG 59.812 43.478 27.24 2.19 32.61 2.62
663 714 4.185394 TGCAGTTCGAAAGACTGTAAACA 58.815 39.130 15.27 4.27 41.84 2.83
741 798 2.701951 TCTATCCCCGTAAAATTCGGCT 59.298 45.455 0.00 0.00 45.71 5.52
806 863 1.000019 ATGGACCGGAGAACCTCGA 60.000 57.895 9.46 0.00 0.00 4.04
814 871 1.596895 GGAGAACCTCGAACGAGCCT 61.597 60.000 17.21 13.13 40.69 4.58
815 872 0.179158 GAGAACCTCGAACGAGCCTC 60.179 60.000 17.21 16.77 40.69 4.70
848 910 6.449698 TCATTCAGCTTGATCCAAGAAAAAC 58.550 36.000 10.55 0.00 43.42 2.43
877 939 1.398595 GCAAGTTGCAAGCACTAACG 58.601 50.000 22.90 0.00 44.26 3.18
910 979 0.889306 AGTAGACTGGACGGCTCAAC 59.111 55.000 0.00 0.00 0.00 3.18
984 1064 3.057174 ACTGTGCAGTGTAGTAGAGAAGC 60.057 47.826 3.80 0.00 40.75 3.86
986 1066 3.057245 TGTGCAGTGTAGTAGAGAAGCAG 60.057 47.826 0.00 0.00 0.00 4.24
1022 1102 2.997897 GGTGGAGGCGAGGAGTGT 60.998 66.667 0.00 0.00 0.00 3.55
1071 1151 2.375766 GCAGTCTGGAACGTCGCTG 61.376 63.158 1.14 0.00 0.00 5.18
1266 1346 1.748122 CGCCAGGCTCAGATTTGCT 60.748 57.895 10.54 0.00 0.00 3.91
1306 1444 0.806102 CCAGGTGCGGTCTCGTATTG 60.806 60.000 0.00 0.00 38.89 1.90
1345 1483 9.975218 AAATTATTTAGTATGTCTGGTTGGTCT 57.025 29.630 0.00 0.00 0.00 3.85
1346 1484 9.614792 AATTATTTAGTATGTCTGGTTGGTCTC 57.385 33.333 0.00 0.00 0.00 3.36
1347 1485 6.875972 ATTTAGTATGTCTGGTTGGTCTCT 57.124 37.500 0.00 0.00 0.00 3.10
1351 1489 2.910688 TGTCTGGTTGGTCTCTGAAC 57.089 50.000 0.00 0.00 0.00 3.18
1357 1840 2.771943 TGGTTGGTCTCTGAACACTTCT 59.228 45.455 0.00 0.00 0.00 2.85
1378 1861 9.533831 ACTTCTGGTGTTCTATTTATTTCCATT 57.466 29.630 0.00 0.00 0.00 3.16
1516 2029 7.846101 AAATTTCTGACTTTCTTCCCTTGAT 57.154 32.000 0.00 0.00 0.00 2.57
1520 2033 8.760980 TTTCTGACTTTCTTCCCTTGATTTTA 57.239 30.769 0.00 0.00 0.00 1.52
1523 2036 9.014297 TCTGACTTTCTTCCCTTGATTTTATTC 57.986 33.333 0.00 0.00 0.00 1.75
1596 2117 3.346315 TGCTTATGGAGTTGTCACATGG 58.654 45.455 0.00 0.00 0.00 3.66
1659 2184 5.167121 TGTGTTTGACTGTTTGTGGATTTG 58.833 37.500 0.00 0.00 0.00 2.32
1660 2185 5.047731 TGTGTTTGACTGTTTGTGGATTTGA 60.048 36.000 0.00 0.00 0.00 2.69
1662 2187 6.019640 GTGTTTGACTGTTTGTGGATTTGATG 60.020 38.462 0.00 0.00 0.00 3.07
2054 2648 6.334102 TCAGGTTAGTTTGTTTGTGTTTGT 57.666 33.333 0.00 0.00 0.00 2.83
2167 2762 3.794028 GTCCGACTCGAGAATTGAATCAG 59.206 47.826 21.68 0.00 0.00 2.90
2233 2837 3.632604 TGGTTAACGAAGAACATGCCAAA 59.367 39.130 0.00 0.00 0.00 3.28
2273 2877 5.549347 ACATGTTGCTTTCATTGCCATAAA 58.451 33.333 0.00 0.00 0.00 1.40
2523 3470 5.871465 AAACAAACAACAAAATGTGGTCC 57.129 34.783 0.00 0.00 32.28 4.46
2944 3908 1.303806 CCCAGTAAAACCACGGGGG 60.304 63.158 9.50 0.00 46.73 5.40
3252 5444 0.107214 TAAATGCCCAGAAGGAGCGG 60.107 55.000 0.00 0.00 38.24 5.52
3534 5726 9.178758 GGAAGTTTGATCCTCAATGTAATAAGT 57.821 33.333 0.00 0.00 36.11 2.24
3802 6005 7.473735 TGGCATGGTATTTGAAAGATAACAA 57.526 32.000 0.00 0.00 31.04 2.83
3804 6007 8.538701 TGGCATGGTATTTGAAAGATAACAAAT 58.461 29.630 0.00 0.00 44.93 2.32
3805 6008 9.382275 GGCATGGTATTTGAAAGATAACAAATT 57.618 29.630 0.00 0.00 41.80 1.82
3874 6078 7.676893 TCTTCCACCGTTATATACCCTGAATAT 59.323 37.037 0.00 0.00 0.00 1.28
3919 6126 0.773644 ACTCTGTTGTCCCCATGCTT 59.226 50.000 0.00 0.00 0.00 3.91
3945 6152 4.878397 GTCATAACTCACATCTTCCCTTGG 59.122 45.833 0.00 0.00 0.00 3.61
3974 6181 8.939201 AGTCATTACTCACATCTTCATAAGTG 57.061 34.615 0.00 0.00 0.00 3.16
3976 6183 9.539825 GTCATTACTCACATCTTCATAAGTGAT 57.460 33.333 0.00 0.00 39.92 3.06
3996 6205 4.883585 TGATCTCCATTTTCTCCCATTTCG 59.116 41.667 0.00 0.00 0.00 3.46
4106 6315 9.274206 GCTCCATCGTCTAGATATACATGTATA 57.726 37.037 24.22 24.22 37.52 1.47
4204 6413 2.107378 TGGCAACATGGGAAGTGTAAGA 59.893 45.455 0.00 0.00 46.17 2.10
4210 6419 5.241403 ACATGGGAAGTGTAAGATGACAA 57.759 39.130 0.00 0.00 0.00 3.18
4259 6472 3.428589 GCCCAGCTCATTTCAATCTCAAC 60.429 47.826 0.00 0.00 0.00 3.18
4385 6602 0.247460 GCCATCTGAAAGTTTGGGCC 59.753 55.000 0.00 0.00 38.29 5.80
4399 6616 0.179097 TGGGCCGTTTTTGCAACTTC 60.179 50.000 0.00 0.00 0.00 3.01
4401 6618 1.212455 GGCCGTTTTTGCAACTTCCG 61.212 55.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.876589 TTCCGCAAGAGTCACGGCC 62.877 63.158 12.83 0.00 46.49 6.13
3 4 2.357034 TTCCGCAAGAGTCACGGC 60.357 61.111 12.83 3.06 46.49 5.68
5 6 1.664649 TGCTTCCGCAAGAGTCACG 60.665 57.895 0.00 0.00 44.62 4.35
6 7 4.361253 TGCTTCCGCAAGAGTCAC 57.639 55.556 0.00 0.00 44.62 3.67
14 15 0.380378 GTCACAGTTTTGCTTCCGCA 59.620 50.000 0.00 0.00 46.24 5.69
15 16 0.663153 AGTCACAGTTTTGCTTCCGC 59.337 50.000 0.00 0.00 0.00 5.54
16 17 2.213499 AGAGTCACAGTTTTGCTTCCG 58.787 47.619 0.00 0.00 0.00 4.30
17 18 2.221981 CGAGAGTCACAGTTTTGCTTCC 59.778 50.000 0.00 0.00 0.00 3.46
18 19 2.348966 GCGAGAGTCACAGTTTTGCTTC 60.349 50.000 0.00 0.00 0.00 3.86
19 20 1.599542 GCGAGAGTCACAGTTTTGCTT 59.400 47.619 0.00 0.00 0.00 3.91
20 21 1.221414 GCGAGAGTCACAGTTTTGCT 58.779 50.000 0.00 0.00 0.00 3.91
21 22 0.111089 CGCGAGAGTCACAGTTTTGC 60.111 55.000 0.00 0.00 0.00 3.68
22 23 1.487482 TCGCGAGAGTCACAGTTTTG 58.513 50.000 3.71 0.00 34.84 2.44
23 24 2.218953 TTCGCGAGAGTCACAGTTTT 57.781 45.000 9.59 0.00 43.69 2.43
24 25 2.128035 CTTTCGCGAGAGTCACAGTTT 58.872 47.619 17.92 0.00 43.69 2.66
25 26 1.337071 TCTTTCGCGAGAGTCACAGTT 59.663 47.619 24.05 0.00 43.69 3.16
26 27 0.952280 TCTTTCGCGAGAGTCACAGT 59.048 50.000 24.05 0.00 43.69 3.55
27 28 2.051879 TTCTTTCGCGAGAGTCACAG 57.948 50.000 24.05 6.89 43.69 3.66
28 29 2.502213 TTTCTTTCGCGAGAGTCACA 57.498 45.000 24.05 4.18 43.69 3.58
29 30 3.854286 TTTTTCTTTCGCGAGAGTCAC 57.146 42.857 24.05 0.00 43.69 3.67
55 56 9.617975 TTCAAAAATTTTCTTTGCGTGAAAAAT 57.382 22.222 3.41 5.13 43.62 1.82
56 57 9.111702 CTTCAAAAATTTTCTTTGCGTGAAAAA 57.888 25.926 3.41 3.30 43.62 1.94
57 58 8.499162 TCTTCAAAAATTTTCTTTGCGTGAAAA 58.501 25.926 3.41 11.70 44.23 2.29
58 59 8.023050 TCTTCAAAAATTTTCTTTGCGTGAAA 57.977 26.923 3.41 0.00 34.43 2.69
59 60 7.588143 TCTTCAAAAATTTTCTTTGCGTGAA 57.412 28.000 3.41 7.66 34.43 3.18
60 61 7.588143 TTCTTCAAAAATTTTCTTTGCGTGA 57.412 28.000 3.41 0.00 34.43 4.35
61 62 8.825064 AATTCTTCAAAAATTTTCTTTGCGTG 57.175 26.923 3.41 0.00 34.43 5.34
62 63 9.838975 AAAATTCTTCAAAAATTTTCTTTGCGT 57.161 22.222 3.41 0.00 40.51 5.24
90 91 7.112779 TGGCTTTCTTAATTTTTGGACCAAAA 58.887 30.769 25.33 25.33 40.85 2.44
91 92 6.653989 TGGCTTTCTTAATTTTTGGACCAAA 58.346 32.000 15.89 15.89 0.00 3.28
92 93 6.240549 TGGCTTTCTTAATTTTTGGACCAA 57.759 33.333 1.69 1.69 0.00 3.67
93 94 5.878406 TGGCTTTCTTAATTTTTGGACCA 57.122 34.783 0.00 0.00 0.00 4.02
94 95 6.202762 CACTTGGCTTTCTTAATTTTTGGACC 59.797 38.462 0.00 0.00 0.00 4.46
95 96 6.202762 CCACTTGGCTTTCTTAATTTTTGGAC 59.797 38.462 0.00 0.00 0.00 4.02
96 97 6.098982 TCCACTTGGCTTTCTTAATTTTTGGA 59.901 34.615 0.00 0.00 34.44 3.53
97 98 6.287525 TCCACTTGGCTTTCTTAATTTTTGG 58.712 36.000 0.00 0.00 34.44 3.28
98 99 7.209475 TCTCCACTTGGCTTTCTTAATTTTTG 58.791 34.615 0.00 0.00 34.44 2.44
99 100 7.360113 TCTCCACTTGGCTTTCTTAATTTTT 57.640 32.000 0.00 0.00 34.44 1.94
100 101 6.976934 TCTCCACTTGGCTTTCTTAATTTT 57.023 33.333 0.00 0.00 34.44 1.82
101 102 6.239317 GGTTCTCCACTTGGCTTTCTTAATTT 60.239 38.462 0.00 0.00 34.44 1.82
102 103 5.243954 GGTTCTCCACTTGGCTTTCTTAATT 59.756 40.000 0.00 0.00 34.44 1.40
103 104 4.767409 GGTTCTCCACTTGGCTTTCTTAAT 59.233 41.667 0.00 0.00 34.44 1.40
104 105 4.142038 GGTTCTCCACTTGGCTTTCTTAA 58.858 43.478 0.00 0.00 34.44 1.85
105 106 3.751518 GGTTCTCCACTTGGCTTTCTTA 58.248 45.455 0.00 0.00 34.44 2.10
106 107 2.587522 GGTTCTCCACTTGGCTTTCTT 58.412 47.619 0.00 0.00 34.44 2.52
107 108 1.543429 CGGTTCTCCACTTGGCTTTCT 60.543 52.381 0.00 0.00 34.44 2.52
108 109 0.875059 CGGTTCTCCACTTGGCTTTC 59.125 55.000 0.00 0.00 34.44 2.62
109 110 0.472471 TCGGTTCTCCACTTGGCTTT 59.528 50.000 0.00 0.00 34.44 3.51
110 111 0.472471 TTCGGTTCTCCACTTGGCTT 59.528 50.000 0.00 0.00 34.44 4.35
111 112 0.472471 TTTCGGTTCTCCACTTGGCT 59.528 50.000 0.00 0.00 34.44 4.75
112 113 0.591659 GTTTCGGTTCTCCACTTGGC 59.408 55.000 0.00 0.00 34.44 4.52
113 114 0.865769 CGTTTCGGTTCTCCACTTGG 59.134 55.000 0.00 0.00 0.00 3.61
114 115 1.525619 GACGTTTCGGTTCTCCACTTG 59.474 52.381 0.00 0.00 0.00 3.16
115 116 1.861971 GACGTTTCGGTTCTCCACTT 58.138 50.000 0.00 0.00 0.00 3.16
116 117 0.318445 CGACGTTTCGGTTCTCCACT 60.318 55.000 0.00 0.00 41.89 4.00
117 118 0.318107 TCGACGTTTCGGTTCTCCAC 60.318 55.000 0.00 0.00 45.90 4.02
118 119 0.385029 TTCGACGTTTCGGTTCTCCA 59.615 50.000 0.00 0.00 45.90 3.86
119 120 1.490621 TTTCGACGTTTCGGTTCTCC 58.509 50.000 0.00 0.00 45.90 3.71
120 121 3.574216 TTTTTCGACGTTTCGGTTCTC 57.426 42.857 0.00 0.00 45.90 2.87
137 138 8.914328 TCTTTAAACGTTCTTTTCGGATTTTT 57.086 26.923 0.00 0.00 0.00 1.94
138 139 7.166970 GCTCTTTAAACGTTCTTTTCGGATTTT 59.833 33.333 0.00 0.00 0.00 1.82
139 140 6.635641 GCTCTTTAAACGTTCTTTTCGGATTT 59.364 34.615 0.00 0.00 0.00 2.17
140 141 6.140786 GCTCTTTAAACGTTCTTTTCGGATT 58.859 36.000 0.00 0.00 0.00 3.01
141 142 5.334646 GGCTCTTTAAACGTTCTTTTCGGAT 60.335 40.000 0.00 0.00 0.00 4.18
142 143 4.024641 GGCTCTTTAAACGTTCTTTTCGGA 60.025 41.667 0.00 0.00 0.00 4.55
143 144 4.216731 GGCTCTTTAAACGTTCTTTTCGG 58.783 43.478 0.00 0.00 0.00 4.30
144 145 3.898361 CGGCTCTTTAAACGTTCTTTTCG 59.102 43.478 0.00 0.00 0.00 3.46
145 146 5.086888 TCGGCTCTTTAAACGTTCTTTTC 57.913 39.130 0.00 0.00 0.00 2.29
146 147 5.488645 TTCGGCTCTTTAAACGTTCTTTT 57.511 34.783 0.00 0.00 0.00 2.27
147 148 5.488645 TTTCGGCTCTTTAAACGTTCTTT 57.511 34.783 0.00 0.00 0.00 2.52
148 149 5.268544 GTTTTCGGCTCTTTAAACGTTCTT 58.731 37.500 0.00 0.00 0.00 2.52
149 150 4.551410 CGTTTTCGGCTCTTTAAACGTTCT 60.551 41.667 0.00 0.00 44.47 3.01
150 151 3.656266 CGTTTTCGGCTCTTTAAACGTTC 59.344 43.478 0.00 0.00 44.47 3.95
151 152 3.610495 CGTTTTCGGCTCTTTAAACGTT 58.390 40.909 0.00 0.00 44.47 3.99
152 153 3.243226 CGTTTTCGGCTCTTTAAACGT 57.757 42.857 9.91 0.00 44.47 3.99
154 155 3.263602 AGCGTTTTCGGCTCTTTAAAC 57.736 42.857 0.00 0.00 44.29 2.01
155 156 3.623863 CAAGCGTTTTCGGCTCTTTAAA 58.376 40.909 0.00 0.00 44.29 1.52
156 157 2.603652 GCAAGCGTTTTCGGCTCTTTAA 60.604 45.455 0.00 0.00 44.29 1.52
157 158 1.069500 GCAAGCGTTTTCGGCTCTTTA 60.069 47.619 0.00 0.00 44.29 1.85
158 159 0.317854 GCAAGCGTTTTCGGCTCTTT 60.318 50.000 0.00 0.00 44.29 2.52
159 160 1.282875 GCAAGCGTTTTCGGCTCTT 59.717 52.632 0.00 0.00 44.29 2.85
160 161 2.946762 GCAAGCGTTTTCGGCTCT 59.053 55.556 0.00 0.00 44.29 4.09
161 162 2.438385 TTCGCAAGCGTTTTCGGCTC 62.438 55.000 14.57 0.00 44.29 4.70
162 163 2.054140 TTTCGCAAGCGTTTTCGGCT 62.054 50.000 14.57 0.00 44.29 5.52
163 164 1.203600 TTTTCGCAAGCGTTTTCGGC 61.204 50.000 14.57 0.00 44.29 5.54
164 165 1.192793 TTTTTCGCAAGCGTTTTCGG 58.807 45.000 14.57 0.00 44.29 4.30
166 167 7.814972 ATTTTTATTTTTCGCAAGCGTTTTC 57.185 28.000 14.57 0.00 40.74 2.29
167 168 9.704098 TTTATTTTTATTTTTCGCAAGCGTTTT 57.296 22.222 14.57 0.00 40.74 2.43
168 169 9.704098 TTTTATTTTTATTTTTCGCAAGCGTTT 57.296 22.222 14.57 0.00 40.74 3.60
169 170 9.704098 TTTTTATTTTTATTTTTCGCAAGCGTT 57.296 22.222 14.57 0.00 40.74 4.84
192 193 2.299013 GCTCCCTCCGGATTTTGTTTTT 59.701 45.455 3.57 0.00 37.60 1.94
193 194 1.893137 GCTCCCTCCGGATTTTGTTTT 59.107 47.619 3.57 0.00 37.60 2.43
194 195 1.545841 GCTCCCTCCGGATTTTGTTT 58.454 50.000 3.57 0.00 37.60 2.83
195 196 0.676782 CGCTCCCTCCGGATTTTGTT 60.677 55.000 3.57 0.00 37.60 2.83
196 197 1.078426 CGCTCCCTCCGGATTTTGT 60.078 57.895 3.57 0.00 37.60 2.83
197 198 1.078426 ACGCTCCCTCCGGATTTTG 60.078 57.895 3.57 0.00 37.60 2.44
198 199 1.221021 GACGCTCCCTCCGGATTTT 59.779 57.895 3.57 0.00 37.60 1.82
199 200 2.732619 GGACGCTCCCTCCGGATTT 61.733 63.158 3.57 0.00 37.60 2.17
200 201 3.155167 GGACGCTCCCTCCGGATT 61.155 66.667 3.57 0.00 37.60 3.01
201 202 4.458829 TGGACGCTCCCTCCGGAT 62.459 66.667 3.57 0.00 37.60 4.18
204 205 3.522731 CTCTGGACGCTCCCTCCG 61.523 72.222 2.23 0.00 35.03 4.63
205 206 3.844090 GCTCTGGACGCTCCCTCC 61.844 72.222 2.23 0.00 35.03 4.30
206 207 4.200283 CGCTCTGGACGCTCCCTC 62.200 72.222 2.23 0.00 35.03 4.30
214 215 4.702081 ACGTGTCGCGCTCTGGAC 62.702 66.667 5.56 5.97 46.11 4.02
215 216 4.700365 CACGTGTCGCGCTCTGGA 62.700 66.667 7.58 0.00 46.11 3.86
216 217 4.700365 TCACGTGTCGCGCTCTGG 62.700 66.667 16.51 0.00 46.11 3.86
217 218 3.461982 GTCACGTGTCGCGCTCTG 61.462 66.667 16.51 0.00 46.11 3.35
230 231 4.803426 CTCTCAGCCGCCCGTCAC 62.803 72.222 0.00 0.00 0.00 3.67
238 239 1.915614 ATTTTGCACGCTCTCAGCCG 61.916 55.000 0.00 0.00 38.18 5.52
239 240 0.455633 CATTTTGCACGCTCTCAGCC 60.456 55.000 0.00 0.00 38.18 4.85
240 241 0.455633 CCATTTTGCACGCTCTCAGC 60.456 55.000 0.00 0.00 38.02 4.26
241 242 0.455633 GCCATTTTGCACGCTCTCAG 60.456 55.000 0.00 0.00 0.00 3.35
242 243 1.580942 GCCATTTTGCACGCTCTCA 59.419 52.632 0.00 0.00 0.00 3.27
243 244 1.512734 CGCCATTTTGCACGCTCTC 60.513 57.895 0.00 0.00 0.00 3.20
244 245 2.562912 CGCCATTTTGCACGCTCT 59.437 55.556 0.00 0.00 0.00 4.09
248 249 1.135699 GATCAGCGCCATTTTGCACG 61.136 55.000 2.29 0.00 0.00 5.34
249 250 1.135699 CGATCAGCGCCATTTTGCAC 61.136 55.000 2.29 0.00 0.00 4.57
250 251 1.137194 CGATCAGCGCCATTTTGCA 59.863 52.632 2.29 0.00 0.00 4.08
251 252 0.456653 AACGATCAGCGCCATTTTGC 60.457 50.000 2.29 0.00 46.04 3.68
252 253 1.261989 CAACGATCAGCGCCATTTTG 58.738 50.000 2.29 0.00 46.04 2.44
253 254 0.881118 ACAACGATCAGCGCCATTTT 59.119 45.000 2.29 0.00 46.04 1.82
254 255 0.168788 CACAACGATCAGCGCCATTT 59.831 50.000 2.29 0.00 46.04 2.32
255 256 0.673333 TCACAACGATCAGCGCCATT 60.673 50.000 2.29 0.00 46.04 3.16
256 257 1.079197 TCACAACGATCAGCGCCAT 60.079 52.632 2.29 0.00 46.04 4.40
257 258 1.737735 CTCACAACGATCAGCGCCA 60.738 57.895 2.29 0.00 46.04 5.69
258 259 2.456119 CCTCACAACGATCAGCGCC 61.456 63.158 2.29 0.00 46.04 6.53
259 260 3.084579 CCTCACAACGATCAGCGC 58.915 61.111 0.00 0.00 46.04 5.92
261 262 0.723981 GAAGCCTCACAACGATCAGC 59.276 55.000 0.00 0.00 0.00 4.26
262 263 1.363744 GGAAGCCTCACAACGATCAG 58.636 55.000 0.00 0.00 0.00 2.90
263 264 0.389817 CGGAAGCCTCACAACGATCA 60.390 55.000 0.00 0.00 0.00 2.92
264 265 0.108804 TCGGAAGCCTCACAACGATC 60.109 55.000 0.00 0.00 0.00 3.69
265 266 0.320374 TTCGGAAGCCTCACAACGAT 59.680 50.000 0.00 0.00 0.00 3.73
266 267 0.105224 TTTCGGAAGCCTCACAACGA 59.895 50.000 0.00 0.00 0.00 3.85
267 268 0.512952 CTTTCGGAAGCCTCACAACG 59.487 55.000 0.00 0.00 0.00 4.10
268 269 1.801178 CTCTTTCGGAAGCCTCACAAC 59.199 52.381 0.00 0.00 32.75 3.32
269 270 1.878102 GCTCTTTCGGAAGCCTCACAA 60.878 52.381 0.00 0.00 32.75 3.33
270 271 0.320771 GCTCTTTCGGAAGCCTCACA 60.321 55.000 0.00 0.00 32.75 3.58
271 272 1.355066 CGCTCTTTCGGAAGCCTCAC 61.355 60.000 0.00 0.00 32.75 3.51
272 273 1.079819 CGCTCTTTCGGAAGCCTCA 60.080 57.895 0.00 0.00 32.75 3.86
273 274 2.456948 GCGCTCTTTCGGAAGCCTC 61.457 63.158 0.00 0.00 32.75 4.70
274 275 2.435059 GCGCTCTTTCGGAAGCCT 60.435 61.111 0.00 0.00 32.75 4.58
275 276 2.435059 AGCGCTCTTTCGGAAGCC 60.435 61.111 2.64 0.00 32.75 4.35
276 277 2.793322 CGAGCGCTCTTTCGGAAGC 61.793 63.158 32.88 5.58 33.39 3.86
277 278 1.406970 GACGAGCGCTCTTTCGGAAG 61.407 60.000 32.88 18.03 40.93 3.46
278 279 1.443872 GACGAGCGCTCTTTCGGAA 60.444 57.895 32.88 0.00 40.93 4.30
279 280 2.137425 TTGACGAGCGCTCTTTCGGA 62.137 55.000 32.88 18.27 40.93 4.55
280 281 1.733041 TTGACGAGCGCTCTTTCGG 60.733 57.895 32.88 20.16 40.93 4.30
281 282 1.004277 AGTTGACGAGCGCTCTTTCG 61.004 55.000 32.88 23.59 42.26 3.46
282 283 1.914700 CTAGTTGACGAGCGCTCTTTC 59.085 52.381 32.88 27.12 0.00 2.62
283 284 1.269998 ACTAGTTGACGAGCGCTCTTT 59.730 47.619 32.88 20.85 0.00 2.52
284 285 0.882474 ACTAGTTGACGAGCGCTCTT 59.118 50.000 32.88 25.90 0.00 2.85
285 286 0.882474 AACTAGTTGACGAGCGCTCT 59.118 50.000 32.88 20.73 0.00 4.09
286 287 0.985549 CAACTAGTTGACGAGCGCTC 59.014 55.000 28.17 27.64 42.93 5.03
287 288 1.009389 GCAACTAGTTGACGAGCGCT 61.009 55.000 34.43 11.27 42.93 5.92
288 289 1.009389 AGCAACTAGTTGACGAGCGC 61.009 55.000 34.43 19.34 42.93 5.92
289 290 0.985549 GAGCAACTAGTTGACGAGCG 59.014 55.000 34.43 10.73 42.93 5.03
290 291 2.255316 GAGAGCAACTAGTTGACGAGC 58.745 52.381 34.43 20.67 42.93 5.03
291 292 2.095668 ACGAGAGCAACTAGTTGACGAG 60.096 50.000 34.43 24.50 42.93 4.18
292 293 1.878088 ACGAGAGCAACTAGTTGACGA 59.122 47.619 34.43 0.00 42.93 4.20
293 294 2.333389 ACGAGAGCAACTAGTTGACG 57.667 50.000 34.43 29.63 42.93 4.35
294 295 6.020520 GCTTTATACGAGAGCAACTAGTTGAC 60.021 42.308 34.43 25.73 42.93 3.18
295 296 6.034591 GCTTTATACGAGAGCAACTAGTTGA 58.965 40.000 34.43 15.33 42.93 3.18
296 297 5.805486 TGCTTTATACGAGAGCAACTAGTTG 59.195 40.000 27.85 27.85 42.89 3.16
297 298 5.805994 GTGCTTTATACGAGAGCAACTAGTT 59.194 40.000 1.12 1.12 46.77 2.24
298 299 5.341617 GTGCTTTATACGAGAGCAACTAGT 58.658 41.667 0.00 0.00 46.77 2.57
299 300 5.874892 GTGCTTTATACGAGAGCAACTAG 57.125 43.478 0.00 0.00 46.77 2.57
302 303 3.927552 GGTGCTTTATACGAGAGCAAC 57.072 47.619 0.00 0.00 46.77 4.17
303 304 3.056107 AGTGGTGCTTTATACGAGAGCAA 60.056 43.478 0.00 0.00 46.77 3.91
304 305 2.496070 AGTGGTGCTTTATACGAGAGCA 59.504 45.455 0.00 0.00 43.56 4.26
305 306 3.117046 GAGTGGTGCTTTATACGAGAGC 58.883 50.000 0.00 0.00 36.95 4.09
306 307 3.181499 ACGAGTGGTGCTTTATACGAGAG 60.181 47.826 0.00 0.00 0.00 3.20
307 308 2.751259 ACGAGTGGTGCTTTATACGAGA 59.249 45.455 0.00 0.00 0.00 4.04
308 309 3.106672 GACGAGTGGTGCTTTATACGAG 58.893 50.000 0.00 0.00 0.00 4.18
309 310 2.488937 TGACGAGTGGTGCTTTATACGA 59.511 45.455 0.00 0.00 0.00 3.43
310 311 2.871133 TGACGAGTGGTGCTTTATACG 58.129 47.619 0.00 0.00 0.00 3.06
311 312 5.600908 TTTTGACGAGTGGTGCTTTATAC 57.399 39.130 0.00 0.00 0.00 1.47
376 377 3.420893 TGGACTTCTCGGCATCATTTTT 58.579 40.909 0.00 0.00 0.00 1.94
377 378 3.071874 TGGACTTCTCGGCATCATTTT 57.928 42.857 0.00 0.00 0.00 1.82
378 379 2.749621 GTTGGACTTCTCGGCATCATTT 59.250 45.455 0.00 0.00 0.00 2.32
379 380 2.359900 GTTGGACTTCTCGGCATCATT 58.640 47.619 0.00 0.00 0.00 2.57
380 381 1.407437 GGTTGGACTTCTCGGCATCAT 60.407 52.381 0.00 0.00 0.00 2.45
381 382 0.036388 GGTTGGACTTCTCGGCATCA 60.036 55.000 0.00 0.00 0.00 3.07
382 383 0.036388 TGGTTGGACTTCTCGGCATC 60.036 55.000 0.00 0.00 0.00 3.91
383 384 0.036010 CTGGTTGGACTTCTCGGCAT 60.036 55.000 0.00 0.00 0.00 4.40
384 385 1.371183 CTGGTTGGACTTCTCGGCA 59.629 57.895 0.00 0.00 0.00 5.69
385 386 2.035442 GCTGGTTGGACTTCTCGGC 61.035 63.158 0.00 0.00 0.00 5.54
386 387 0.671781 CAGCTGGTTGGACTTCTCGG 60.672 60.000 5.57 0.00 0.00 4.63
387 388 0.034059 ACAGCTGGTTGGACTTCTCG 59.966 55.000 19.93 0.00 0.00 4.04
388 389 1.802069 GACAGCTGGTTGGACTTCTC 58.198 55.000 19.93 0.00 0.00 2.87
389 390 0.034059 CGACAGCTGGTTGGACTTCT 59.966 55.000 19.93 0.00 0.00 2.85
390 391 0.249911 ACGACAGCTGGTTGGACTTC 60.250 55.000 19.93 2.48 34.98 3.01
391 392 0.180406 AACGACAGCTGGTTGGACTT 59.820 50.000 19.93 0.00 34.98 3.01
392 393 0.532862 CAACGACAGCTGGTTGGACT 60.533 55.000 21.51 0.00 39.78 3.85
393 394 0.531974 TCAACGACAGCTGGTTGGAC 60.532 55.000 25.89 8.79 42.81 4.02
394 395 0.179234 TTCAACGACAGCTGGTTGGA 59.821 50.000 25.89 19.45 42.81 3.53
395 396 1.238439 ATTCAACGACAGCTGGTTGG 58.762 50.000 25.89 12.94 42.81 3.77
396 397 2.653890 CAATTCAACGACAGCTGGTTG 58.346 47.619 22.63 22.63 43.69 3.77
397 398 1.001378 GCAATTCAACGACAGCTGGTT 60.001 47.619 19.93 10.63 0.00 3.67
398 399 0.593128 GCAATTCAACGACAGCTGGT 59.407 50.000 19.93 3.96 0.00 4.00
399 400 0.592637 TGCAATTCAACGACAGCTGG 59.407 50.000 19.93 3.21 0.00 4.85
400 401 1.532437 TCTGCAATTCAACGACAGCTG 59.468 47.619 13.48 13.48 0.00 4.24
401 402 1.882912 TCTGCAATTCAACGACAGCT 58.117 45.000 0.00 0.00 0.00 4.24
402 403 2.310577 GTTCTGCAATTCAACGACAGC 58.689 47.619 0.00 0.00 0.00 4.40
403 404 2.350772 GGGTTCTGCAATTCAACGACAG 60.351 50.000 0.00 0.00 0.00 3.51
404 405 1.606668 GGGTTCTGCAATTCAACGACA 59.393 47.619 0.00 0.00 0.00 4.35
405 406 1.606668 TGGGTTCTGCAATTCAACGAC 59.393 47.619 0.00 0.00 0.00 4.34
406 407 1.606668 GTGGGTTCTGCAATTCAACGA 59.393 47.619 0.00 0.00 0.00 3.85
407 408 1.608590 AGTGGGTTCTGCAATTCAACG 59.391 47.619 0.00 0.00 0.00 4.10
408 409 2.887152 AGAGTGGGTTCTGCAATTCAAC 59.113 45.455 0.00 0.00 0.00 3.18
409 410 2.886523 CAGAGTGGGTTCTGCAATTCAA 59.113 45.455 0.00 0.00 38.28 2.69
410 411 2.106338 TCAGAGTGGGTTCTGCAATTCA 59.894 45.455 0.00 0.00 43.39 2.57
411 412 2.783135 TCAGAGTGGGTTCTGCAATTC 58.217 47.619 0.00 0.00 43.39 2.17
412 413 2.957402 TCAGAGTGGGTTCTGCAATT 57.043 45.000 0.00 0.00 43.39 2.32
413 414 2.887152 GTTTCAGAGTGGGTTCTGCAAT 59.113 45.455 0.00 0.00 43.39 3.56
414 415 2.297701 GTTTCAGAGTGGGTTCTGCAA 58.702 47.619 0.00 0.00 43.39 4.08
415 416 1.476833 GGTTTCAGAGTGGGTTCTGCA 60.477 52.381 0.00 0.00 43.39 4.41
416 417 1.239347 GGTTTCAGAGTGGGTTCTGC 58.761 55.000 0.00 0.00 43.39 4.26
417 418 2.222027 GTGGTTTCAGAGTGGGTTCTG 58.778 52.381 0.00 0.00 44.74 3.02
418 419 1.843851 TGTGGTTTCAGAGTGGGTTCT 59.156 47.619 0.00 0.00 0.00 3.01
419 420 2.222027 CTGTGGTTTCAGAGTGGGTTC 58.778 52.381 0.00 0.00 37.61 3.62
420 421 1.564348 ACTGTGGTTTCAGAGTGGGTT 59.436 47.619 0.65 0.00 44.48 4.11
421 422 1.213296 ACTGTGGTTTCAGAGTGGGT 58.787 50.000 0.65 0.00 44.48 4.51
434 435 1.005867 GCCAATGCAACCACTGTGG 60.006 57.895 24.80 24.80 39.70 4.17
435 436 1.740905 TGCCAATGCAACCACTGTG 59.259 52.632 0.00 0.00 46.66 3.66
436 437 4.274012 TGCCAATGCAACCACTGT 57.726 50.000 0.00 0.00 46.66 3.55
492 494 0.521291 ACGAACGCATTTGGACCATG 59.479 50.000 0.00 0.00 0.00 3.66
496 498 1.144969 TCAGACGAACGCATTTGGAC 58.855 50.000 0.00 0.00 0.00 4.02
526 528 1.297364 GCTAGGTGTGCCCCGTTTA 59.703 57.895 0.00 0.00 34.57 2.01
527 529 2.033602 GCTAGGTGTGCCCCGTTT 59.966 61.111 0.00 0.00 34.57 3.60
534 536 2.939103 CAAATGACTAGGCTAGGTGTGC 59.061 50.000 24.57 9.45 0.00 4.57
536 538 2.840651 AGCAAATGACTAGGCTAGGTGT 59.159 45.455 24.57 5.54 34.25 4.16
537 539 3.462021 GAGCAAATGACTAGGCTAGGTG 58.538 50.000 24.57 14.48 36.59 4.00
538 540 2.101582 CGAGCAAATGACTAGGCTAGGT 59.898 50.000 24.57 10.91 36.59 3.08
539 541 2.748605 CGAGCAAATGACTAGGCTAGG 58.251 52.381 24.57 7.58 36.59 3.02
540 542 2.131183 GCGAGCAAATGACTAGGCTAG 58.869 52.381 19.83 19.83 36.59 3.42
541 543 1.757118 AGCGAGCAAATGACTAGGCTA 59.243 47.619 0.00 0.00 36.59 3.93
542 544 0.539051 AGCGAGCAAATGACTAGGCT 59.461 50.000 0.00 0.00 39.75 4.58
543 545 0.933796 GAGCGAGCAAATGACTAGGC 59.066 55.000 0.00 0.00 0.00 3.93
544 546 1.134699 TGGAGCGAGCAAATGACTAGG 60.135 52.381 0.00 0.00 0.00 3.02
545 547 2.299993 TGGAGCGAGCAAATGACTAG 57.700 50.000 0.00 0.00 0.00 2.57
546 548 2.028112 AGTTGGAGCGAGCAAATGACTA 60.028 45.455 0.00 0.00 0.00 2.59
547 549 1.160137 GTTGGAGCGAGCAAATGACT 58.840 50.000 0.00 0.00 0.00 3.41
550 552 1.464687 CGAAGTTGGAGCGAGCAAATG 60.465 52.381 0.00 0.00 0.00 2.32
628 679 3.056536 TCGAACTGCAGCAGAAATCTACT 60.057 43.478 29.70 0.06 35.18 2.57
629 680 3.254060 TCGAACTGCAGCAGAAATCTAC 58.746 45.455 29.70 9.99 35.18 2.59
630 681 3.592898 TCGAACTGCAGCAGAAATCTA 57.407 42.857 29.70 12.51 35.18 1.98
631 682 2.462456 TCGAACTGCAGCAGAAATCT 57.538 45.000 29.70 2.58 35.18 2.40
632 683 3.187227 TCTTTCGAACTGCAGCAGAAATC 59.813 43.478 29.70 20.27 35.18 2.17
648 699 2.096417 CGGCCTTGTTTACAGTCTTTCG 60.096 50.000 0.00 0.00 0.00 3.46
653 704 4.060205 TCTAAACGGCCTTGTTTACAGTC 58.940 43.478 10.81 0.00 41.92 3.51
663 714 1.003233 CCTCCAACTCTAAACGGCCTT 59.997 52.381 0.00 0.00 0.00 4.35
814 871 3.448660 TCAAGCTGAATGATTCCTCGAGA 59.551 43.478 15.71 0.00 0.00 4.04
815 872 3.790091 TCAAGCTGAATGATTCCTCGAG 58.210 45.455 5.13 5.13 0.00 4.04
848 910 3.740590 CTTGCAACTTGCTGACTAATCG 58.259 45.455 14.78 0.00 45.31 3.34
910 979 1.293924 CTTGCTTATCTGACCAGGCG 58.706 55.000 0.00 0.00 0.00 5.52
984 1064 3.132160 CTCCATGATCACTAGCAAGCTG 58.868 50.000 4.53 0.00 0.00 4.24
986 1066 2.158842 ACCTCCATGATCACTAGCAAGC 60.159 50.000 0.00 0.00 0.00 4.01
1253 1333 1.471684 CCTCACAAGCAAATCTGAGCC 59.528 52.381 0.00 0.00 30.60 4.70
1266 1346 0.768221 AGAAGCCCCAGTCCTCACAA 60.768 55.000 0.00 0.00 0.00 3.33
1337 1475 3.134458 CAGAAGTGTTCAGAGACCAACC 58.866 50.000 0.00 0.00 0.00 3.77
1338 1476 3.134458 CCAGAAGTGTTCAGAGACCAAC 58.866 50.000 0.00 0.00 0.00 3.77
1341 1479 2.760374 CACCAGAAGTGTTCAGAGACC 58.240 52.381 0.00 0.00 41.93 3.85
1574 2095 3.758023 CCATGTGACAACTCCATAAGCAA 59.242 43.478 0.00 0.00 0.00 3.91
1586 2107 2.423185 GGCGATTTCATCCATGTGACAA 59.577 45.455 0.00 0.00 0.00 3.18
1596 2117 5.036737 CACTAAAATGGTGGCGATTTCATC 58.963 41.667 0.00 0.00 0.00 2.92
1885 2479 2.248248 TGAAGATCTCCCACTCGTTGT 58.752 47.619 0.00 0.00 0.00 3.32
1894 2488 4.164221 TGACCATAACCTTGAAGATCTCCC 59.836 45.833 0.00 0.00 0.00 4.30
2167 2762 6.071560 ACCGGAACTTTTAGGAATCCAATTTC 60.072 38.462 9.46 0.00 0.00 2.17
2233 2837 6.620678 CAACATGTCCCGTTCATTTAAAGAT 58.379 36.000 0.00 0.00 0.00 2.40
2273 2877 2.297033 GTCCCACTCACAAACATGCAAT 59.703 45.455 0.00 0.00 0.00 3.56
2354 3281 9.525826 AATGTCATTAGTTCCTCTCTTTTTCAT 57.474 29.630 0.00 0.00 0.00 2.57
2355 3282 8.924511 AATGTCATTAGTTCCTCTCTTTTTCA 57.075 30.769 0.00 0.00 0.00 2.69
2366 3293 9.129209 GCAGAAAAGTTTAATGTCATTAGTTCC 57.871 33.333 5.45 0.00 0.00 3.62
2367 3294 9.677567 TGCAGAAAAGTTTAATGTCATTAGTTC 57.322 29.630 5.45 6.28 0.00 3.01
2467 3414 2.035832 GCTTGTACTTTGTTGGGCACAT 59.964 45.455 0.00 0.00 34.43 3.21
2944 3908 5.070313 ACCCACATTTACCAATAATGCATCC 59.930 40.000 0.00 0.00 36.65 3.51
3033 3997 6.488683 TCGGGTCAATAAAACACTCTCAATTT 59.511 34.615 0.00 0.00 0.00 1.82
3252 5444 4.752101 ACTTGAAATGCTGATACGGATAGC 59.248 41.667 3.05 3.05 37.93 2.97
3259 5451 6.681777 ACTTTGGAACTTGAAATGCTGATAC 58.318 36.000 0.00 0.00 0.00 2.24
3546 5738 8.322906 TGAAGTAACAAATGTCTTAGTGATGG 57.677 34.615 0.00 0.00 0.00 3.51
3802 6005 8.816640 ATTGAAGTTTGAATTCACGCTAAATT 57.183 26.923 7.89 5.33 36.44 1.82
3804 6007 7.421599 TGATTGAAGTTTGAATTCACGCTAAA 58.578 30.769 7.89 7.96 36.44 1.85
3805 6008 6.964908 TGATTGAAGTTTGAATTCACGCTAA 58.035 32.000 7.89 0.00 36.44 3.09
3809 6012 6.400303 GGCAATGATTGAAGTTTGAATTCACG 60.400 38.462 7.89 0.00 36.44 4.35
3874 6078 4.794278 AGCACAATGAATGCAAATCTCA 57.206 36.364 0.00 0.00 45.92 3.27
3974 6181 4.276926 CCGAAATGGGAGAAAATGGAGATC 59.723 45.833 0.00 0.00 0.00 2.75
3976 6183 3.265737 TCCGAAATGGGAGAAAATGGAGA 59.734 43.478 0.00 0.00 38.76 3.71
3996 6205 6.016693 GGAAAAGAAATAGCCAGCTTATCTCC 60.017 42.308 0.00 0.00 0.00 3.71
4106 6315 8.945195 ACATATTATCATGTTCATTGGTGGAT 57.055 30.769 0.00 0.00 35.60 3.41
4108 6317 9.820725 AAAACATATTATCATGTTCATTGGTGG 57.179 29.630 2.23 0.00 46.00 4.61
4204 6413 2.151202 GATGTGTGGACCGTTTGTCAT 58.849 47.619 0.00 0.00 46.38 3.06
4210 6419 2.559698 TCAATGATGTGTGGACCGTT 57.440 45.000 0.00 0.00 0.00 4.44
4355 6572 4.019321 ACTTTCAGATGGCTAGGCAAAGTA 60.019 41.667 24.09 10.13 32.25 2.24
4385 6602 1.212455 GGCCGGAAGTTGCAAAAACG 61.212 55.000 5.05 3.83 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.