Multiple sequence alignment - TraesCS2B01G077100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G077100 chr2B 100.000 1666 0 0 975 2640 42264154 42265819 0.000000e+00 3077.0
1 TraesCS2B01G077100 chr2B 100.000 622 0 0 1 622 42263180 42263801 0.000000e+00 1149.0
2 TraesCS2B01G077100 chr2B 89.610 308 20 4 5 311 42238929 42239225 5.330000e-102 381.0
3 TraesCS2B01G077100 chr2A 86.989 1591 91 58 981 2507 29261908 29263446 0.000000e+00 1685.0
4 TraesCS2B01G077100 chr2A 89.271 494 26 7 134 609 29261333 29261817 6.290000e-166 593.0
5 TraesCS2B01G077100 chr2A 94.690 113 6 0 2525 2637 29263433 29263545 2.700000e-40 176.0
6 TraesCS2B01G077100 chr2A 89.062 128 9 1 3 125 29257537 29257664 1.270000e-33 154.0
7 TraesCS2B01G077100 chr2D 89.938 805 33 14 1209 2005 27062759 27063523 0.000000e+00 994.0
8 TraesCS2B01G077100 chr2D 90.379 634 30 8 5 609 27061790 27062421 0.000000e+00 804.0
9 TraesCS2B01G077100 chr2D 85.907 518 45 18 2014 2507 27063560 27064073 6.470000e-146 527.0
10 TraesCS2B01G077100 chr2D 98.810 168 2 0 994 1161 27062502 27062669 1.540000e-77 300.0
11 TraesCS2B01G077100 chr2D 93.860 114 6 1 2525 2637 27064060 27064173 1.260000e-38 171.0
12 TraesCS2B01G077100 chr6D 86.084 309 33 7 1341 1641 24029443 24029749 9.110000e-85 324.0
13 TraesCS2B01G077100 chr6B 86.084 309 33 6 1341 1641 38971505 38971811 9.110000e-85 324.0
14 TraesCS2B01G077100 chr6A 86.084 309 33 7 1341 1641 22555509 22555815 9.110000e-85 324.0
15 TraesCS2B01G077100 chr6A 82.090 134 18 3 999 1126 22555333 22555466 2.780000e-20 110.0
16 TraesCS2B01G077100 chr1D 100.000 37 0 0 1602 1638 191861279 191861315 4.720000e-08 69.4
17 TraesCS2B01G077100 chr1B 100.000 37 0 0 1602 1638 265648396 265648432 4.720000e-08 69.4
18 TraesCS2B01G077100 chr1A 100.000 37 0 0 1602 1638 237746077 237746113 4.720000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G077100 chr2B 42263180 42265819 2639 False 2113.0 3077 100.0000 1 2640 2 chr2B.!!$F2 2639
1 TraesCS2B01G077100 chr2A 29257537 29263545 6008 False 652.0 1685 90.0030 3 2637 4 chr2A.!!$F1 2634
2 TraesCS2B01G077100 chr2D 27061790 27064173 2383 False 559.2 994 91.7788 5 2637 5 chr2D.!!$F1 2632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 3889 0.100682 CCAGTGTATCGACAGACGGG 59.899 60.0 0.0 0.0 42.82 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 5458 0.68028 AAGCTAGAGAAGGTCGCCGA 60.68 55.0 0.0 0.0 33.87 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 131 3.692406 GAACAGTCCGAGCCCCGT 61.692 66.667 0.00 0.00 36.31 5.28
159 3825 1.493311 GGAGTTTCTGCGCGACTTG 59.507 57.895 12.10 0.00 0.00 3.16
160 3826 1.154580 GAGTTTCTGCGCGACTTGC 60.155 57.895 12.10 0.00 41.47 4.01
197 3875 3.352338 GGCCGGAGTACGACCAGTG 62.352 68.421 5.05 0.00 45.35 3.66
211 3889 0.100682 CCAGTGTATCGACAGACGGG 59.899 60.000 0.00 0.00 42.82 5.28
438 4133 1.600485 CGCCCATAATAACCACCGTTC 59.400 52.381 0.00 0.00 33.17 3.95
557 4252 1.405272 CCCCCGGACGCCTATAAACT 61.405 60.000 0.73 0.00 0.00 2.66
558 4253 0.249741 CCCCGGACGCCTATAAACTG 60.250 60.000 0.73 0.00 0.00 3.16
609 4304 1.300481 CACAGCATCTCATCCAGCAG 58.700 55.000 0.00 0.00 0.00 4.24
1098 4821 0.898320 AGACGGTGGAGATGAAGGTG 59.102 55.000 0.00 0.00 0.00 4.00
1161 4884 2.174764 CTCGACGACATGAAAGGTACG 58.825 52.381 0.00 0.00 0.00 3.67
1162 4885 1.135603 TCGACGACATGAAAGGTACGG 60.136 52.381 0.00 0.00 0.00 4.02
1185 4908 2.804828 AAGCTTTCTCCTTCCGGCCG 62.805 60.000 21.04 21.04 0.00 6.13
1201 4966 1.006102 CCGAATCCGATTCCTCCCG 60.006 63.158 14.28 4.27 38.22 5.14
1227 4993 2.483877 TCGCACATGTTTCTCCATTGAC 59.516 45.455 0.00 0.00 0.00 3.18
1256 5022 1.682344 GGAAATCTTGCCCCGGCTT 60.682 57.895 7.35 0.00 42.51 4.35
1324 5090 5.689383 AGTGTATGTGTTTGATTGTGGTC 57.311 39.130 0.00 0.00 0.00 4.02
1456 5224 4.509737 GAGCCGTGGCCCTACGTC 62.510 72.222 13.90 1.66 42.24 4.34
1624 5392 2.741211 GACGAGAACCCCAACGCC 60.741 66.667 0.00 0.00 0.00 5.68
1645 5413 3.003482 CCTGCTCCGTCATGTAGTAGTAC 59.997 52.174 0.37 0.37 0.00 2.73
1651 5419 6.145371 GCTCCGTCATGTAGTAGTACTAGTAC 59.855 46.154 29.49 29.49 40.59 2.73
1674 5442 4.581868 TCTTTGTAATTGTAAGACCCCGG 58.418 43.478 0.00 0.00 0.00 5.73
1675 5443 2.406596 TGTAATTGTAAGACCCCGGC 57.593 50.000 0.00 0.00 0.00 6.13
1676 5444 1.065272 TGTAATTGTAAGACCCCGGCC 60.065 52.381 0.00 0.00 0.00 6.13
1677 5445 0.178533 TAATTGTAAGACCCCGGCCG 59.821 55.000 21.04 21.04 0.00 6.13
1678 5446 2.546114 AATTGTAAGACCCCGGCCGG 62.546 60.000 37.99 37.99 0.00 6.13
1713 5481 1.770294 CGACCTTCTCTAGCTTCCCT 58.230 55.000 0.00 0.00 0.00 4.20
1722 5490 0.540923 CTAGCTTCCCTGCTCTGCTT 59.459 55.000 0.00 0.00 42.97 3.91
1732 5500 2.105466 GCTCTGCTTTGCTCCTCCG 61.105 63.158 0.00 0.00 0.00 4.63
1733 5501 1.449246 CTCTGCTTTGCTCCTCCGG 60.449 63.158 0.00 0.00 0.00 5.14
1734 5502 2.437359 CTGCTTTGCTCCTCCGGG 60.437 66.667 0.00 0.00 0.00 5.73
1735 5503 3.984193 CTGCTTTGCTCCTCCGGGG 62.984 68.421 0.00 0.00 0.00 5.73
1767 5540 2.825532 GGGATCTCTAGATGGTCTCTGC 59.174 54.545 0.00 0.00 35.28 4.26
1780 5553 2.550180 GGTCTCTGCTGGTGTTTTCTTC 59.450 50.000 0.00 0.00 0.00 2.87
1865 5645 5.688807 AGATATGTTGGATTTGGTGAGGAG 58.311 41.667 0.00 0.00 0.00 3.69
1898 5681 5.284864 TCAATCTTGTTGTTTATGCGCAAA 58.715 33.333 17.11 7.62 0.00 3.68
1899 5682 5.750547 TCAATCTTGTTGTTTATGCGCAAAA 59.249 32.000 17.11 13.71 0.00 2.44
1912 5695 1.994779 GCGCAAAATGTTCCCAATCAG 59.005 47.619 0.30 0.00 0.00 2.90
1913 5696 2.352617 GCGCAAAATGTTCCCAATCAGA 60.353 45.455 0.30 0.00 0.00 3.27
1914 5697 3.676873 GCGCAAAATGTTCCCAATCAGAT 60.677 43.478 0.30 0.00 0.00 2.90
1915 5698 4.107622 CGCAAAATGTTCCCAATCAGATC 58.892 43.478 0.00 0.00 0.00 2.75
1938 5721 3.409851 TGAGCGTTGCATGATTGATTC 57.590 42.857 0.00 0.00 0.00 2.52
2010 5793 5.046735 ACTCTGCACTAGTCAATCAATCAGT 60.047 40.000 0.00 0.00 0.00 3.41
2015 5830 4.023980 ACTAGTCAATCAATCAGTCGGGA 58.976 43.478 0.00 0.00 0.00 5.14
2030 5845 1.759459 CGGGAGCTGATAAGTCCCCC 61.759 65.000 10.58 0.00 46.58 5.40
2053 5868 5.277974 CCTGACCAACATTTATTCATAGCCG 60.278 44.000 0.00 0.00 0.00 5.52
2067 5882 2.691409 TAGCCGAAGTCCCAAAGATG 57.309 50.000 0.00 0.00 0.00 2.90
2098 5913 5.365619 TCTTACTGTTCTGAAACTTGGGAC 58.634 41.667 0.00 0.00 36.30 4.46
2160 5975 3.565905 CCAAACTGAGATTGGCAACTC 57.434 47.619 8.61 17.42 40.78 3.01
2166 5981 3.244078 ACTGAGATTGGCAACTCGTTGTA 60.244 43.478 18.37 0.00 42.31 2.41
2170 5985 3.746492 AGATTGGCAACTCGTTGTACTTC 59.254 43.478 0.00 0.00 42.31 3.01
2185 6000 1.652947 ACTTCGACCATACCCCACTT 58.347 50.000 0.00 0.00 0.00 3.16
2208 6036 1.143305 CTGCAGTTTCTGTCTCCGTG 58.857 55.000 5.25 0.00 33.43 4.94
2213 6041 1.070786 TTTCTGTCTCCGTGCCACC 59.929 57.895 0.00 0.00 0.00 4.61
2215 6043 2.357517 CTGTCTCCGTGCCACCAC 60.358 66.667 0.00 0.00 38.62 4.16
2403 6241 5.395657 CCAAAATCAGATAAAAAGGGGCTCC 60.396 44.000 0.00 0.00 0.00 4.70
2408 6246 3.134081 CAGATAAAAAGGGGCTCCTCGTA 59.866 47.826 5.00 0.00 44.07 3.43
2409 6247 3.388350 AGATAAAAAGGGGCTCCTCGTAG 59.612 47.826 5.00 0.00 44.07 3.51
2420 6258 4.698780 GGGCTCCTCGTAGTTATTTTTGTT 59.301 41.667 0.00 0.00 0.00 2.83
2421 6259 5.391629 GGGCTCCTCGTAGTTATTTTTGTTG 60.392 44.000 0.00 0.00 0.00 3.33
2450 6295 6.636454 AGGGTTTATCCACTGATTTCTGTA 57.364 37.500 0.00 0.00 38.11 2.74
2455 6300 3.895232 TCCACTGATTTCTGTAGCTCC 57.105 47.619 0.00 0.00 0.00 4.70
2477 6322 0.830648 TCTCCGGGCACTGATTAAGG 59.169 55.000 0.00 0.00 36.31 2.69
2500 6345 0.896940 AGCTCGGTCCGTAACTTCCA 60.897 55.000 11.88 0.00 0.00 3.53
2501 6346 0.175073 GCTCGGTCCGTAACTTCCAT 59.825 55.000 11.88 0.00 0.00 3.41
2502 6347 1.406539 GCTCGGTCCGTAACTTCCATA 59.593 52.381 11.88 0.00 0.00 2.74
2503 6348 2.543238 GCTCGGTCCGTAACTTCCATAG 60.543 54.545 11.88 0.00 0.00 2.23
2504 6349 2.026641 TCGGTCCGTAACTTCCATAGG 58.973 52.381 11.88 0.00 0.00 2.57
2505 6350 2.026641 CGGTCCGTAACTTCCATAGGA 58.973 52.381 2.08 0.00 0.00 2.94
2506 6351 2.428171 CGGTCCGTAACTTCCATAGGAA 59.572 50.000 2.08 0.00 39.66 3.36
2507 6352 3.069158 CGGTCCGTAACTTCCATAGGAAT 59.931 47.826 2.08 0.00 41.23 3.01
2508 6353 4.442472 CGGTCCGTAACTTCCATAGGAATT 60.442 45.833 2.08 0.00 41.23 2.17
2509 6354 5.221303 CGGTCCGTAACTTCCATAGGAATTA 60.221 44.000 2.08 0.00 41.23 1.40
2510 6355 5.987953 GGTCCGTAACTTCCATAGGAATTAC 59.012 44.000 0.00 9.08 41.23 1.89
2511 6356 5.987953 GTCCGTAACTTCCATAGGAATTACC 59.012 44.000 16.47 0.00 41.23 2.85
2512 6357 5.070847 TCCGTAACTTCCATAGGAATTACCC 59.929 44.000 16.47 0.00 41.23 3.69
2513 6358 4.986659 CGTAACTTCCATAGGAATTACCCG 59.013 45.833 16.47 7.49 41.23 5.28
2514 6359 3.487120 ACTTCCATAGGAATTACCCGC 57.513 47.619 0.00 0.00 41.23 6.13
2515 6360 2.775384 ACTTCCATAGGAATTACCCGCA 59.225 45.455 0.00 0.00 41.23 5.69
2516 6361 2.922740 TCCATAGGAATTACCCGCAC 57.077 50.000 0.00 0.00 40.05 5.34
2517 6362 2.120312 TCCATAGGAATTACCCGCACA 58.880 47.619 0.00 0.00 40.05 4.57
2518 6363 2.506231 TCCATAGGAATTACCCGCACAA 59.494 45.455 0.00 0.00 40.05 3.33
2519 6364 3.054287 TCCATAGGAATTACCCGCACAAA 60.054 43.478 0.00 0.00 40.05 2.83
2520 6365 3.697045 CCATAGGAATTACCCGCACAAAA 59.303 43.478 0.00 0.00 40.05 2.44
2521 6366 4.158764 CCATAGGAATTACCCGCACAAAAA 59.841 41.667 0.00 0.00 40.05 1.94
2567 6412 4.111916 ACGCAATTGAGTTGTCAAAAAGG 58.888 39.130 10.34 0.00 45.88 3.11
2637 6483 9.303116 TGTTATCTTAGCCAAAAGTTAATTCCA 57.697 29.630 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 97 4.114997 CATGGGGTTTGCGCGTCC 62.115 66.667 8.43 4.72 0.00 4.79
96 102 0.240945 GACTGTTCATGGGGTTTGCG 59.759 55.000 0.00 0.00 0.00 4.85
102 108 1.450312 GCTCGGACTGTTCATGGGG 60.450 63.158 0.00 0.00 0.00 4.96
125 131 2.758327 CCGGGAGTGATCGGTCCA 60.758 66.667 13.67 0.00 41.23 4.02
197 3875 0.813184 TTGGACCCGTCTGTCGATAC 59.187 55.000 0.00 0.00 42.86 2.24
201 3879 2.027625 GCTTTGGACCCGTCTGTCG 61.028 63.158 0.00 0.00 36.07 4.35
211 3889 1.988467 GTAGTAACCGTCGCTTTGGAC 59.012 52.381 0.00 0.00 0.00 4.02
346 4040 1.909459 ATGGTGCCATGTGACCGCTA 61.909 55.000 2.45 0.00 35.03 4.26
351 4045 1.714899 GCGGTATGGTGCCATGTGAC 61.715 60.000 13.57 4.29 37.82 3.67
438 4133 2.674220 GGGAGGAAGCTGGTGGGAG 61.674 68.421 0.00 0.00 0.00 4.30
1098 4821 4.933064 CCCTCGCAGTCGATCCGC 62.933 72.222 0.00 0.00 44.56 5.54
1161 4884 1.827681 GGAAGGAGAAAGCTTGGACC 58.172 55.000 0.00 3.75 0.00 4.46
1162 4885 1.443802 CGGAAGGAGAAAGCTTGGAC 58.556 55.000 0.00 0.00 0.00 4.02
1185 4908 2.826725 AGATACGGGAGGAATCGGATTC 59.173 50.000 20.01 20.01 38.55 2.52
1201 4966 3.521560 TGGAGAAACATGTGCGAGATAC 58.478 45.455 0.00 0.00 0.00 2.24
1227 4993 4.237724 GGCAAGATTTCCTTTTCTTTCCG 58.762 43.478 0.00 0.00 31.42 4.30
1256 5022 8.038862 AGATATAGATCTGGCCAAAGAAAAGA 57.961 34.615 7.01 0.00 41.12 2.52
1299 5065 7.519168 CGACCACAATCAAACACATACACTTTA 60.519 37.037 0.00 0.00 0.00 1.85
1456 5224 4.446413 GCCACCACGTCGTAGGGG 62.446 72.222 7.83 7.83 41.48 4.79
1459 5227 4.710695 TGCGCCACCACGTCGTAG 62.711 66.667 4.18 0.00 34.88 3.51
1600 5368 1.446272 GGGGTTCTCGTCGCTGAAG 60.446 63.158 1.70 0.00 0.00 3.02
1624 5392 3.878103 AGTACTACTACATGACGGAGCAG 59.122 47.826 0.00 0.00 0.00 4.24
1645 5413 9.583765 GGGTCTTACAATTACAAAGAGTACTAG 57.416 37.037 0.00 0.00 30.91 2.57
1651 5419 4.634443 CCGGGGTCTTACAATTACAAAGAG 59.366 45.833 0.00 0.00 30.22 2.85
1687 5455 2.049475 CTAGAGAAGGTCGCCGACGG 62.049 65.000 10.29 10.29 40.63 4.79
1688 5456 1.352404 CTAGAGAAGGTCGCCGACG 59.648 63.158 11.60 0.00 42.01 5.12
1690 5458 0.680280 AAGCTAGAGAAGGTCGCCGA 60.680 55.000 0.00 0.00 33.87 5.54
1713 5481 1.002868 GGAGGAGCAAAGCAGAGCA 60.003 57.895 0.00 0.00 0.00 4.26
1735 5503 4.778143 AGATCCCAACGCCGCCAC 62.778 66.667 0.00 0.00 0.00 5.01
1767 5540 8.244113 AGTTTCAAAAGTAGAAGAAAACACCAG 58.756 33.333 0.00 0.00 32.44 4.00
1865 5645 3.760684 ACAACAAGATTGATGGAGCTTCC 59.239 43.478 7.60 0.00 35.54 3.46
1898 5681 5.039920 TCATCGATCTGATTGGGAACATT 57.960 39.130 0.00 0.00 42.32 2.71
1899 5682 4.639334 CTCATCGATCTGATTGGGAACAT 58.361 43.478 0.00 0.00 42.32 2.71
1912 5695 1.211743 TCATGCAACGCTCATCGATC 58.788 50.000 0.00 0.00 41.67 3.69
1913 5696 1.875009 ATCATGCAACGCTCATCGAT 58.125 45.000 0.00 0.00 41.67 3.59
1914 5697 1.328374 CAATCATGCAACGCTCATCGA 59.672 47.619 0.00 0.00 41.67 3.59
1915 5698 1.328374 TCAATCATGCAACGCTCATCG 59.672 47.619 0.00 0.00 45.38 3.84
2010 5793 0.759436 GGGGACTTATCAGCTCCCGA 60.759 60.000 7.88 0.00 39.53 5.14
2015 5830 1.501582 GTCAGGGGGACTTATCAGCT 58.498 55.000 0.00 0.00 43.46 4.24
2030 5845 5.527214 TCGGCTATGAATAAATGTTGGTCAG 59.473 40.000 0.00 0.00 0.00 3.51
2053 5868 5.884792 AGATTGTGATCATCTTTGGGACTTC 59.115 40.000 0.00 0.00 34.60 3.01
2067 5882 8.316640 AGTTTCAGAACAGTAAGATTGTGATC 57.683 34.615 0.00 0.00 38.26 2.92
2098 5913 3.242870 GCTTGGGCGACTTCAGATATTTG 60.243 47.826 0.00 0.00 0.00 2.32
2112 5927 3.818787 GCCTGATGTGCTTGGGCG 61.819 66.667 0.00 0.00 42.25 6.13
2159 5974 2.164219 GGGTATGGTCGAAGTACAACGA 59.836 50.000 9.64 9.64 36.18 3.85
2160 5975 2.533266 GGGTATGGTCGAAGTACAACG 58.467 52.381 0.00 0.08 0.00 4.10
2166 5981 1.278127 CAAGTGGGGTATGGTCGAAGT 59.722 52.381 0.00 0.00 0.00 3.01
2170 5985 1.762957 AGATCAAGTGGGGTATGGTCG 59.237 52.381 0.00 0.00 29.52 4.79
2185 6000 2.353109 CGGAGACAGAAACTGCAGATCA 60.353 50.000 23.35 0.00 34.37 2.92
2213 6041 4.012895 GTCACCGCGGCTTGTGTG 62.013 66.667 28.58 15.54 34.14 3.82
2215 6043 3.240606 CTTGTCACCGCGGCTTGTG 62.241 63.158 28.58 16.82 0.00 3.33
2242 6075 5.241728 ACTTTGTCTAAAATGAACTCCTGCC 59.758 40.000 0.00 0.00 0.00 4.85
2243 6076 6.319141 ACTTTGTCTAAAATGAACTCCTGC 57.681 37.500 0.00 0.00 0.00 4.85
2293 6126 0.771127 TTGTCTAGCCCAGCCAAGTT 59.229 50.000 0.00 0.00 0.00 2.66
2357 6195 6.919721 TGGTGTCTTATATTTTTGCTTCACC 58.080 36.000 0.00 0.00 41.01 4.02
2403 6241 8.953990 CCTTTGAACAACAAAAATAACTACGAG 58.046 33.333 0.00 0.00 45.97 4.18
2408 6246 8.856153 AAACCCTTTGAACAACAAAAATAACT 57.144 26.923 0.00 0.00 45.97 2.24
2420 6258 5.055265 TCAGTGGATAAACCCTTTGAACA 57.945 39.130 0.00 0.00 38.00 3.18
2421 6259 6.590234 AATCAGTGGATAAACCCTTTGAAC 57.410 37.500 0.00 0.00 38.00 3.18
2477 6322 1.516603 GTTACGGACCGAGCTGAGC 60.517 63.158 23.38 0.00 0.00 4.26
2518 6363 9.219603 CCTTTTCTTCCTTTCAAAGTTCTTTTT 57.780 29.630 0.00 0.00 0.00 1.94
2519 6364 8.593679 TCCTTTTCTTCCTTTCAAAGTTCTTTT 58.406 29.630 0.00 0.00 0.00 2.27
2520 6365 8.035394 GTCCTTTTCTTCCTTTCAAAGTTCTTT 58.965 33.333 0.00 0.00 0.00 2.52
2521 6366 7.548097 GTCCTTTTCTTCCTTTCAAAGTTCTT 58.452 34.615 0.00 0.00 0.00 2.52
2522 6367 6.183360 CGTCCTTTTCTTCCTTTCAAAGTTCT 60.183 38.462 0.00 0.00 0.00 3.01
2523 6368 5.971792 CGTCCTTTTCTTCCTTTCAAAGTTC 59.028 40.000 0.00 0.00 0.00 3.01
2524 6369 5.678871 GCGTCCTTTTCTTCCTTTCAAAGTT 60.679 40.000 0.00 0.00 0.00 2.66
2525 6370 4.202020 GCGTCCTTTTCTTCCTTTCAAAGT 60.202 41.667 0.00 0.00 0.00 2.66
2526 6371 4.202010 TGCGTCCTTTTCTTCCTTTCAAAG 60.202 41.667 0.00 0.00 0.00 2.77
2527 6372 3.697045 TGCGTCCTTTTCTTCCTTTCAAA 59.303 39.130 0.00 0.00 0.00 2.69
2528 6373 3.283751 TGCGTCCTTTTCTTCCTTTCAA 58.716 40.909 0.00 0.00 0.00 2.69
2529 6374 2.925724 TGCGTCCTTTTCTTCCTTTCA 58.074 42.857 0.00 0.00 0.00 2.69
2530 6375 3.982576 TTGCGTCCTTTTCTTCCTTTC 57.017 42.857 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.