Multiple sequence alignment - TraesCS2B01G074300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G074300 chr2B 100.000 7697 0 0 1 7697 40316783 40324479 0.000000e+00 14214.0
1 TraesCS2B01G074300 chr2B 91.045 1139 86 7 326 1449 40298770 40299907 0.000000e+00 1524.0
2 TraesCS2B01G074300 chr2B 75.057 870 179 28 458 1317 454848061 454848902 3.390000e-98 370.0
3 TraesCS2B01G074300 chr2B 83.461 393 31 15 6511 6896 40299905 40300270 1.240000e-87 335.0
4 TraesCS2B01G074300 chr3B 98.053 5084 65 7 1452 6513 187585030 187579959 0.000000e+00 8809.0
5 TraesCS2B01G074300 chr3B 94.387 5113 223 20 1451 6511 757204971 757210071 0.000000e+00 7793.0
6 TraesCS2B01G074300 chr3B 94.295 5101 240 14 1451 6511 757022994 757028083 0.000000e+00 7760.0
7 TraesCS2B01G074300 chr3B 94.328 5095 237 14 1451 6511 757160225 757165301 0.000000e+00 7760.0
8 TraesCS2B01G074300 chr3B 94.250 5113 229 22 1451 6511 756919278 756924377 0.000000e+00 7753.0
9 TraesCS2B01G074300 chr3B 94.613 297 14 1 21 315 448782954 448783250 7.040000e-125 459.0
10 TraesCS2B01G074300 chr6B 97.452 5103 70 9 1452 6510 137423151 137428237 0.000000e+00 8648.0
11 TraesCS2B01G074300 chr6B 92.294 3465 235 18 3068 6508 718534172 718530716 0.000000e+00 4891.0
12 TraesCS2B01G074300 chr6B 91.066 1623 127 8 1452 3071 718564144 718562537 0.000000e+00 2178.0
13 TraesCS2B01G074300 chr6B 97.214 646 18 0 6964 7609 21063406 21064051 0.000000e+00 1094.0
14 TraesCS2B01G074300 chrUn 92.081 5152 307 33 1448 6518 17135779 17140910 0.000000e+00 7160.0
15 TraesCS2B01G074300 chr7B 92.356 4618 295 25 1452 6038 744164775 744160185 0.000000e+00 6519.0
16 TraesCS2B01G074300 chr7B 96.584 644 21 1 6964 7606 692876223 692876866 0.000000e+00 1066.0
17 TraesCS2B01G074300 chr7B 97.806 319 6 1 1 319 195787020 195787337 4.060000e-152 549.0
18 TraesCS2B01G074300 chr7A 88.816 3049 300 25 1452 4473 624878188 624881222 0.000000e+00 3703.0
19 TraesCS2B01G074300 chr7A 77.007 922 173 29 415 1317 63307047 63307948 6.940000e-135 492.0
20 TraesCS2B01G074300 chr7A 93.730 319 13 2 1 319 692012818 692012507 9.040000e-129 472.0
21 TraesCS2B01G074300 chr5B 92.615 2275 143 10 2626 4891 662560796 662558538 0.000000e+00 3247.0
22 TraesCS2B01G074300 chr5B 91.482 1127 87 6 1452 2575 662561910 662560790 0.000000e+00 1541.0
23 TraesCS2B01G074300 chr5B 94.603 315 17 0 1 315 493692396 493692710 8.980000e-134 488.0
24 TraesCS2B01G074300 chr7D 91.544 2318 166 16 4200 6510 136958784 136956490 0.000000e+00 3168.0
25 TraesCS2B01G074300 chr2D 93.110 1132 67 3 326 1451 24935921 24937047 0.000000e+00 1648.0
26 TraesCS2B01G074300 chr2D 89.529 382 28 4 6511 6888 24937043 24937416 2.510000e-129 473.0
27 TraesCS2B01G074300 chr2D 91.489 94 5 2 7606 7697 24937549 24937641 8.110000e-25 126.0
28 TraesCS2B01G074300 chr2A 92.035 904 72 0 548 1451 27371056 27371959 0.000000e+00 1271.0
29 TraesCS2B01G074300 chr2A 88.401 319 25 6 6563 6874 27411238 27411551 2.620000e-99 374.0
30 TraesCS2B01G074300 chr2A 91.845 233 14 3 326 554 27370665 27370896 3.470000e-83 320.0
31 TraesCS2B01G074300 chr2A 96.429 56 2 0 6511 6566 27371955 27372010 8.220000e-15 93.5
32 TraesCS2B01G074300 chr2A 82.609 92 4 5 7606 7697 27411574 27411653 3.850000e-08 71.3
33 TraesCS2B01G074300 chr1B 97.214 646 17 1 6964 7608 269218902 269218257 0.000000e+00 1092.0
34 TraesCS2B01G074300 chr1B 96.744 645 21 0 6964 7608 25227751 25227107 0.000000e+00 1075.0
35 TraesCS2B01G074300 chr1B 96.744 645 21 0 6964 7608 644278201 644278845 0.000000e+00 1075.0
36 TraesCS2B01G074300 chr1B 96.423 643 23 0 6967 7609 636663160 636662518 0.000000e+00 1061.0
37 TraesCS2B01G074300 chr4B 96.870 639 20 0 6964 7602 59190418 59189780 0.000000e+00 1070.0
38 TraesCS2B01G074300 chr4B 96.589 645 22 0 6964 7608 629957291 629957935 0.000000e+00 1070.0
39 TraesCS2B01G074300 chr4B 80.062 321 50 10 1 316 301901204 301901515 7.770000e-55 226.0
40 TraesCS2B01G074300 chr4A 96.440 646 23 0 6964 7609 702119036 702119681 0.000000e+00 1066.0
41 TraesCS2B01G074300 chr4A 93.651 315 17 2 1 315 731916461 731916772 1.170000e-127 468.0
42 TraesCS2B01G074300 chr4A 84.507 71 11 0 4194 4264 676460950 676460880 3.850000e-08 71.3
43 TraesCS2B01G074300 chr1A 98.154 325 4 2 1 324 96436300 96436623 4.030000e-157 566.0
44 TraesCS2B01G074300 chr5D 91.667 324 23 3 1 322 505356283 505356604 5.480000e-121 446.0
45 TraesCS2B01G074300 chr5A 79.938 324 50 11 1 319 307217523 307217210 2.800000e-54 224.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G074300 chr2B 40316783 40324479 7696 False 14214.0 14214 100.000000 1 7697 1 chr2B.!!$F1 7696
1 TraesCS2B01G074300 chr2B 40298770 40300270 1500 False 929.5 1524 87.253000 326 6896 2 chr2B.!!$F3 6570
2 TraesCS2B01G074300 chr2B 454848061 454848902 841 False 370.0 370 75.057000 458 1317 1 chr2B.!!$F2 859
3 TraesCS2B01G074300 chr3B 187579959 187585030 5071 True 8809.0 8809 98.053000 1452 6513 1 chr3B.!!$R1 5061
4 TraesCS2B01G074300 chr3B 757204971 757210071 5100 False 7793.0 7793 94.387000 1451 6511 1 chr3B.!!$F5 5060
5 TraesCS2B01G074300 chr3B 757022994 757028083 5089 False 7760.0 7760 94.295000 1451 6511 1 chr3B.!!$F3 5060
6 TraesCS2B01G074300 chr3B 757160225 757165301 5076 False 7760.0 7760 94.328000 1451 6511 1 chr3B.!!$F4 5060
7 TraesCS2B01G074300 chr3B 756919278 756924377 5099 False 7753.0 7753 94.250000 1451 6511 1 chr3B.!!$F2 5060
8 TraesCS2B01G074300 chr6B 137423151 137428237 5086 False 8648.0 8648 97.452000 1452 6510 1 chr6B.!!$F2 5058
9 TraesCS2B01G074300 chr6B 718530716 718534172 3456 True 4891.0 4891 92.294000 3068 6508 1 chr6B.!!$R1 3440
10 TraesCS2B01G074300 chr6B 718562537 718564144 1607 True 2178.0 2178 91.066000 1452 3071 1 chr6B.!!$R2 1619
11 TraesCS2B01G074300 chr6B 21063406 21064051 645 False 1094.0 1094 97.214000 6964 7609 1 chr6B.!!$F1 645
12 TraesCS2B01G074300 chrUn 17135779 17140910 5131 False 7160.0 7160 92.081000 1448 6518 1 chrUn.!!$F1 5070
13 TraesCS2B01G074300 chr7B 744160185 744164775 4590 True 6519.0 6519 92.356000 1452 6038 1 chr7B.!!$R1 4586
14 TraesCS2B01G074300 chr7B 692876223 692876866 643 False 1066.0 1066 96.584000 6964 7606 1 chr7B.!!$F2 642
15 TraesCS2B01G074300 chr7A 624878188 624881222 3034 False 3703.0 3703 88.816000 1452 4473 1 chr7A.!!$F2 3021
16 TraesCS2B01G074300 chr7A 63307047 63307948 901 False 492.0 492 77.007000 415 1317 1 chr7A.!!$F1 902
17 TraesCS2B01G074300 chr5B 662558538 662561910 3372 True 2394.0 3247 92.048500 1452 4891 2 chr5B.!!$R1 3439
18 TraesCS2B01G074300 chr7D 136956490 136958784 2294 True 3168.0 3168 91.544000 4200 6510 1 chr7D.!!$R1 2310
19 TraesCS2B01G074300 chr2D 24935921 24937641 1720 False 749.0 1648 91.376000 326 7697 3 chr2D.!!$F1 7371
20 TraesCS2B01G074300 chr2A 27370665 27372010 1345 False 561.5 1271 93.436333 326 6566 3 chr2A.!!$F1 6240
21 TraesCS2B01G074300 chr1B 269218257 269218902 645 True 1092.0 1092 97.214000 6964 7608 1 chr1B.!!$R2 644
22 TraesCS2B01G074300 chr1B 25227107 25227751 644 True 1075.0 1075 96.744000 6964 7608 1 chr1B.!!$R1 644
23 TraesCS2B01G074300 chr1B 644278201 644278845 644 False 1075.0 1075 96.744000 6964 7608 1 chr1B.!!$F1 644
24 TraesCS2B01G074300 chr1B 636662518 636663160 642 True 1061.0 1061 96.423000 6967 7609 1 chr1B.!!$R3 642
25 TraesCS2B01G074300 chr4B 59189780 59190418 638 True 1070.0 1070 96.870000 6964 7602 1 chr4B.!!$R1 638
26 TraesCS2B01G074300 chr4B 629957291 629957935 644 False 1070.0 1070 96.589000 6964 7608 1 chr4B.!!$F2 644
27 TraesCS2B01G074300 chr4A 702119036 702119681 645 False 1066.0 1066 96.440000 6964 7609 1 chr4A.!!$F1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.038159 GTGTTGGAGAGTCGGGTGAG 60.038 60.000 0.00 0.0 0.00 3.51 F
206 207 0.102481 CGGGAGACTAACGGTGATGG 59.898 60.000 0.00 0.0 0.00 3.51 F
207 208 0.179081 GGGAGACTAACGGTGATGGC 60.179 60.000 0.00 0.0 0.00 4.40 F
297 298 0.396435 TTGCAGAGGTTGTCGATGGT 59.604 50.000 0.00 0.0 0.00 3.55 F
758 942 0.599558 CTCACCGTTCGTTACCCTGA 59.400 55.000 0.00 0.0 0.00 3.86 F
2213 2489 1.340405 ACGCAAGCCCAGAAGATCAAT 60.340 47.619 0.00 0.0 45.62 2.57 F
2752 3081 0.445436 GAAGTCATTGACTGCTGGCG 59.555 55.000 19.65 0.0 42.59 5.69 F
3220 3550 0.494788 GATCGAAAGCGTCATCGTCG 59.505 55.000 0.00 0.0 39.91 5.12 F
3655 3985 3.388024 TGGGGAGGAGAATATGAGAAACG 59.612 47.826 0.00 0.0 0.00 3.60 F
5048 5499 4.987832 AGTCAGCTACTATTCGACTTGTG 58.012 43.478 0.34 0.0 36.36 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1221 1420 1.227147 GTTGCCATAGTAGCCGCGA 60.227 57.895 8.23 0.00 0.00 5.87 R
1395 1594 3.152400 GCGTGGTACCTCGGGGAT 61.152 66.667 31.13 0.00 36.25 3.85 R
1725 1948 3.295093 TGATTGCCTCTCTCTCGATCTT 58.705 45.455 0.00 0.00 0.00 2.40 R
2213 2489 2.782222 GGTGAGCGCCATCCTCGTA 61.782 63.158 2.29 0.00 31.98 3.43 R
2752 3081 1.603172 CGAAGTCCTCATCATACCGGC 60.603 57.143 0.00 0.00 0.00 6.13 R
3655 3985 2.415512 ACGCTACGGAAGAAAGAATTGC 59.584 45.455 0.00 0.00 0.00 3.56 R
4170 4501 4.342378 CCCGTGATCAGGAGAAGATAAAGA 59.658 45.833 16.84 0.00 0.00 2.52 R
5048 5499 5.008118 GCCTCTGGAAATAGCAATAGACAAC 59.992 44.000 0.00 0.00 0.00 3.32 R
5426 5877 5.994250 TGTAGATCTCCCAAATCTTTGAGG 58.006 41.667 0.00 4.49 40.55 3.86 R
6787 7254 0.463654 AGTTGTTGTTGCGCAGAGGA 60.464 50.000 11.31 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.776322 CCATTGCCGCTCGGTGGA 62.776 66.667 10.24 0.00 34.74 4.02
18 19 2.514592 CATTGCCGCTCGGTGGAT 60.515 61.111 10.24 0.00 34.74 3.41
19 20 2.514592 ATTGCCGCTCGGTGGATG 60.515 61.111 10.24 0.00 34.74 3.51
20 21 3.329542 ATTGCCGCTCGGTGGATGT 62.330 57.895 10.24 0.00 34.74 3.06
21 22 2.819984 ATTGCCGCTCGGTGGATGTT 62.820 55.000 10.24 0.00 34.74 2.71
22 23 3.499737 GCCGCTCGGTGGATGTTG 61.500 66.667 10.24 0.00 34.74 3.33
23 24 3.499737 CCGCTCGGTGGATGTTGC 61.500 66.667 0.00 0.00 34.74 4.17
24 25 3.499737 CGCTCGGTGGATGTTGCC 61.500 66.667 0.00 0.00 0.00 4.52
25 26 3.499737 GCTCGGTGGATGTTGCCG 61.500 66.667 0.00 0.00 46.12 5.69
26 27 3.499737 CTCGGTGGATGTTGCCGC 61.500 66.667 0.00 0.00 44.58 6.53
27 28 3.958147 CTCGGTGGATGTTGCCGCT 62.958 63.158 0.00 0.00 44.58 5.52
28 29 3.803082 CGGTGGATGTTGCCGCTG 61.803 66.667 0.00 0.00 38.99 5.18
29 30 4.120331 GGTGGATGTTGCCGCTGC 62.120 66.667 0.00 0.00 38.49 5.25
42 43 4.943591 GCTGCACGTGCGTGTGTG 62.944 66.667 33.22 19.29 46.90 3.82
43 44 4.297891 CTGCACGTGCGTGTGTGG 62.298 66.667 33.22 14.05 46.90 4.17
46 47 4.901123 CACGTGCGTGTGTGGGGA 62.901 66.667 15.60 0.00 40.91 4.81
47 48 3.936203 ACGTGCGTGTGTGGGGAT 61.936 61.111 0.00 0.00 0.00 3.85
48 49 3.422303 CGTGCGTGTGTGGGGATG 61.422 66.667 0.00 0.00 0.00 3.51
49 50 3.055719 GTGCGTGTGTGGGGATGG 61.056 66.667 0.00 0.00 0.00 3.51
50 51 4.343323 TGCGTGTGTGGGGATGGG 62.343 66.667 0.00 0.00 0.00 4.00
52 53 3.326578 CGTGTGTGGGGATGGGGA 61.327 66.667 0.00 0.00 0.00 4.81
53 54 2.677228 GTGTGTGGGGATGGGGAG 59.323 66.667 0.00 0.00 0.00 4.30
54 55 2.613696 TGTGTGGGGATGGGGAGG 60.614 66.667 0.00 0.00 0.00 4.30
55 56 3.420482 GTGTGGGGATGGGGAGGG 61.420 72.222 0.00 0.00 0.00 4.30
56 57 3.967024 TGTGGGGATGGGGAGGGT 61.967 66.667 0.00 0.00 0.00 4.34
57 58 3.097162 GTGGGGATGGGGAGGGTC 61.097 72.222 0.00 0.00 0.00 4.46
58 59 3.632049 TGGGGATGGGGAGGGTCA 61.632 66.667 0.00 0.00 0.00 4.02
59 60 2.774351 GGGGATGGGGAGGGTCAG 60.774 72.222 0.00 0.00 0.00 3.51
60 61 2.774351 GGGATGGGGAGGGTCAGG 60.774 72.222 0.00 0.00 0.00 3.86
61 62 2.042930 GGATGGGGAGGGTCAGGT 59.957 66.667 0.00 0.00 0.00 4.00
62 63 2.378634 GGATGGGGAGGGTCAGGTG 61.379 68.421 0.00 0.00 0.00 4.00
63 64 1.616628 GATGGGGAGGGTCAGGTGT 60.617 63.158 0.00 0.00 0.00 4.16
64 65 1.915078 GATGGGGAGGGTCAGGTGTG 61.915 65.000 0.00 0.00 0.00 3.82
65 66 4.035102 GGGGAGGGTCAGGTGTGC 62.035 72.222 0.00 0.00 0.00 4.57
66 67 4.394712 GGGAGGGTCAGGTGTGCG 62.395 72.222 0.00 0.00 0.00 5.34
67 68 3.626924 GGAGGGTCAGGTGTGCGT 61.627 66.667 0.00 0.00 0.00 5.24
68 69 2.357517 GAGGGTCAGGTGTGCGTG 60.358 66.667 0.00 0.00 0.00 5.34
69 70 4.626081 AGGGTCAGGTGTGCGTGC 62.626 66.667 0.00 0.00 0.00 5.34
72 73 3.269347 GTCAGGTGTGCGTGCGTT 61.269 61.111 0.00 0.00 0.00 4.84
73 74 3.268603 TCAGGTGTGCGTGCGTTG 61.269 61.111 0.00 0.00 0.00 4.10
74 75 3.268603 CAGGTGTGCGTGCGTTGA 61.269 61.111 0.00 0.00 0.00 3.18
75 76 2.967076 AGGTGTGCGTGCGTTGAG 60.967 61.111 0.00 0.00 0.00 3.02
76 77 3.269347 GGTGTGCGTGCGTTGAGT 61.269 61.111 0.00 0.00 0.00 3.41
77 78 2.245532 GTGTGCGTGCGTTGAGTC 59.754 61.111 0.00 0.00 0.00 3.36
78 79 3.326981 TGTGCGTGCGTTGAGTCG 61.327 61.111 0.00 0.00 0.00 4.18
79 80 3.327754 GTGCGTGCGTTGAGTCGT 61.328 61.111 0.00 0.00 0.00 4.34
80 81 3.326981 TGCGTGCGTTGAGTCGTG 61.327 61.111 0.00 0.00 0.00 4.35
81 82 4.059459 GCGTGCGTTGAGTCGTGG 62.059 66.667 0.00 0.00 0.00 4.94
82 83 2.657296 CGTGCGTTGAGTCGTGGT 60.657 61.111 0.00 0.00 0.00 4.16
83 84 2.927618 CGTGCGTTGAGTCGTGGTG 61.928 63.158 0.00 0.00 0.00 4.17
84 85 1.881252 GTGCGTTGAGTCGTGGTGT 60.881 57.895 0.00 0.00 0.00 4.16
85 86 1.153529 TGCGTTGAGTCGTGGTGTT 60.154 52.632 0.00 0.00 0.00 3.32
86 87 1.275657 GCGTTGAGTCGTGGTGTTG 59.724 57.895 0.00 0.00 0.00 3.33
87 88 1.931551 CGTTGAGTCGTGGTGTTGG 59.068 57.895 0.00 0.00 0.00 3.77
88 89 0.528901 CGTTGAGTCGTGGTGTTGGA 60.529 55.000 0.00 0.00 0.00 3.53
89 90 1.217882 GTTGAGTCGTGGTGTTGGAG 58.782 55.000 0.00 0.00 0.00 3.86
90 91 1.116308 TTGAGTCGTGGTGTTGGAGA 58.884 50.000 0.00 0.00 0.00 3.71
91 92 0.673985 TGAGTCGTGGTGTTGGAGAG 59.326 55.000 0.00 0.00 0.00 3.20
92 93 0.674534 GAGTCGTGGTGTTGGAGAGT 59.325 55.000 0.00 0.00 0.00 3.24
93 94 0.674534 AGTCGTGGTGTTGGAGAGTC 59.325 55.000 0.00 0.00 0.00 3.36
94 95 0.663568 GTCGTGGTGTTGGAGAGTCG 60.664 60.000 0.00 0.00 0.00 4.18
95 96 1.372997 CGTGGTGTTGGAGAGTCGG 60.373 63.158 0.00 0.00 0.00 4.79
96 97 1.004918 GTGGTGTTGGAGAGTCGGG 60.005 63.158 0.00 0.00 0.00 5.14
97 98 1.458777 TGGTGTTGGAGAGTCGGGT 60.459 57.895 0.00 0.00 0.00 5.28
98 99 1.004918 GGTGTTGGAGAGTCGGGTG 60.005 63.158 0.00 0.00 0.00 4.61
99 100 1.469335 GGTGTTGGAGAGTCGGGTGA 61.469 60.000 0.00 0.00 0.00 4.02
100 101 0.038159 GTGTTGGAGAGTCGGGTGAG 60.038 60.000 0.00 0.00 0.00 3.51
101 102 1.185618 TGTTGGAGAGTCGGGTGAGG 61.186 60.000 0.00 0.00 0.00 3.86
102 103 1.609501 TTGGAGAGTCGGGTGAGGG 60.610 63.158 0.00 0.00 0.00 4.30
103 104 2.760385 GGAGAGTCGGGTGAGGGG 60.760 72.222 0.00 0.00 0.00 4.79
104 105 2.760385 GAGAGTCGGGTGAGGGGG 60.760 72.222 0.00 0.00 0.00 5.40
107 108 4.974438 AGTCGGGTGAGGGGGCAA 62.974 66.667 0.00 0.00 0.00 4.52
108 109 4.410400 GTCGGGTGAGGGGGCAAG 62.410 72.222 0.00 0.00 0.00 4.01
109 110 4.974438 TCGGGTGAGGGGGCAAGT 62.974 66.667 0.00 0.00 0.00 3.16
110 111 3.966543 CGGGTGAGGGGGCAAGTT 61.967 66.667 0.00 0.00 0.00 2.66
111 112 2.283173 GGGTGAGGGGGCAAGTTG 60.283 66.667 0.00 0.00 0.00 3.16
112 113 2.520968 GGTGAGGGGGCAAGTTGT 59.479 61.111 4.48 0.00 0.00 3.32
113 114 1.603739 GGTGAGGGGGCAAGTTGTC 60.604 63.158 4.48 0.81 0.00 3.18
114 115 1.456287 GTGAGGGGGCAAGTTGTCT 59.544 57.895 7.52 0.00 0.00 3.41
115 116 0.178990 GTGAGGGGGCAAGTTGTCTT 60.179 55.000 7.52 0.00 0.00 3.01
116 117 0.555769 TGAGGGGGCAAGTTGTCTTT 59.444 50.000 7.52 0.00 0.00 2.52
117 118 1.063266 TGAGGGGGCAAGTTGTCTTTT 60.063 47.619 7.52 0.00 0.00 2.27
118 119 2.039418 GAGGGGGCAAGTTGTCTTTTT 58.961 47.619 7.52 0.00 0.00 1.94
141 142 6.636562 TTTTTAATCTGCAACGAGGGTAAA 57.363 33.333 0.00 0.00 0.00 2.01
142 143 6.636562 TTTTAATCTGCAACGAGGGTAAAA 57.363 33.333 0.00 0.00 0.00 1.52
143 144 6.827586 TTTAATCTGCAACGAGGGTAAAAT 57.172 33.333 0.00 0.00 0.00 1.82
144 145 6.827586 TTAATCTGCAACGAGGGTAAAATT 57.172 33.333 0.00 0.00 0.00 1.82
145 146 4.701956 ATCTGCAACGAGGGTAAAATTG 57.298 40.909 0.00 0.00 0.00 2.32
146 147 2.817258 TCTGCAACGAGGGTAAAATTGG 59.183 45.455 0.00 0.00 0.00 3.16
147 148 2.817258 CTGCAACGAGGGTAAAATTGGA 59.183 45.455 0.00 0.00 0.00 3.53
148 149 3.426615 TGCAACGAGGGTAAAATTGGAT 58.573 40.909 0.00 0.00 0.00 3.41
149 150 3.829601 TGCAACGAGGGTAAAATTGGATT 59.170 39.130 0.00 0.00 0.00 3.01
150 151 4.282195 TGCAACGAGGGTAAAATTGGATTT 59.718 37.500 0.00 0.00 0.00 2.17
151 152 5.221541 TGCAACGAGGGTAAAATTGGATTTT 60.222 36.000 0.00 4.32 44.13 1.82
152 153 5.699001 GCAACGAGGGTAAAATTGGATTTTT 59.301 36.000 4.21 0.00 42.13 1.94
153 154 6.128661 GCAACGAGGGTAAAATTGGATTTTTC 60.129 38.462 4.21 0.26 42.13 2.29
154 155 6.658188 ACGAGGGTAAAATTGGATTTTTCA 57.342 33.333 4.21 0.00 42.13 2.69
155 156 7.056844 ACGAGGGTAAAATTGGATTTTTCAA 57.943 32.000 4.21 0.00 42.13 2.69
156 157 7.151976 ACGAGGGTAAAATTGGATTTTTCAAG 58.848 34.615 4.21 0.00 42.13 3.02
157 158 7.014808 ACGAGGGTAAAATTGGATTTTTCAAGA 59.985 33.333 4.21 0.00 42.13 3.02
158 159 7.870445 CGAGGGTAAAATTGGATTTTTCAAGAA 59.130 33.333 4.21 0.00 42.13 2.52
159 160 9.554395 GAGGGTAAAATTGGATTTTTCAAGAAA 57.446 29.630 4.21 0.00 42.13 2.52
160 161 9.913310 AGGGTAAAATTGGATTTTTCAAGAAAA 57.087 25.926 3.98 3.98 42.13 2.29
161 162 9.944663 GGGTAAAATTGGATTTTTCAAGAAAAC 57.055 29.630 7.44 0.00 42.13 2.43
178 179 9.613428 TCAAGAAAACTGATAAGAAAACAGAGA 57.387 29.630 0.00 0.00 35.85 3.10
179 180 9.657121 CAAGAAAACTGATAAGAAAACAGAGAC 57.343 33.333 0.00 0.00 35.85 3.36
180 181 9.620259 AAGAAAACTGATAAGAAAACAGAGACT 57.380 29.630 0.00 0.00 35.85 3.24
181 182 9.620259 AGAAAACTGATAAGAAAACAGAGACTT 57.380 29.630 0.00 0.00 35.85 3.01
182 183 9.657121 GAAAACTGATAAGAAAACAGAGACTTG 57.343 33.333 0.00 0.00 35.85 3.16
183 184 7.736447 AACTGATAAGAAAACAGAGACTTGG 57.264 36.000 0.00 0.00 35.85 3.61
184 185 6.831976 ACTGATAAGAAAACAGAGACTTGGT 58.168 36.000 0.00 0.00 35.85 3.67
185 186 7.963532 ACTGATAAGAAAACAGAGACTTGGTA 58.036 34.615 0.00 0.00 35.85 3.25
186 187 8.429641 ACTGATAAGAAAACAGAGACTTGGTAA 58.570 33.333 0.00 0.00 35.85 2.85
187 188 8.603242 TGATAAGAAAACAGAGACTTGGTAAC 57.397 34.615 0.00 0.00 0.00 2.50
188 189 5.986004 AAGAAAACAGAGACTTGGTAACG 57.014 39.130 0.00 0.00 42.51 3.18
189 190 4.377897 AGAAAACAGAGACTTGGTAACGG 58.622 43.478 0.00 0.00 42.51 4.44
190 191 2.833631 AACAGAGACTTGGTAACGGG 57.166 50.000 0.00 0.00 42.51 5.28
191 192 2.005370 ACAGAGACTTGGTAACGGGA 57.995 50.000 0.00 0.00 42.51 5.14
192 193 1.893801 ACAGAGACTTGGTAACGGGAG 59.106 52.381 0.00 0.00 42.51 4.30
193 194 2.168496 CAGAGACTTGGTAACGGGAGA 58.832 52.381 0.00 0.00 42.51 3.71
194 195 2.094649 CAGAGACTTGGTAACGGGAGAC 60.095 54.545 0.00 0.00 42.51 3.36
195 196 2.169330 GAGACTTGGTAACGGGAGACT 58.831 52.381 0.00 0.00 42.51 3.24
196 197 3.009916 AGAGACTTGGTAACGGGAGACTA 59.990 47.826 0.00 0.00 42.51 2.59
197 198 3.760684 GAGACTTGGTAACGGGAGACTAA 59.239 47.826 0.00 0.00 42.51 2.24
198 199 3.509184 AGACTTGGTAACGGGAGACTAAC 59.491 47.826 0.00 0.00 42.51 2.34
199 200 2.229784 ACTTGGTAACGGGAGACTAACG 59.770 50.000 0.00 0.00 42.51 3.18
200 201 1.176527 TGGTAACGGGAGACTAACGG 58.823 55.000 3.70 0.00 42.51 4.44
201 202 1.177401 GGTAACGGGAGACTAACGGT 58.823 55.000 3.70 0.00 0.00 4.83
202 203 1.135286 GGTAACGGGAGACTAACGGTG 60.135 57.143 0.00 0.00 0.00 4.94
203 204 1.812571 GTAACGGGAGACTAACGGTGA 59.187 52.381 0.00 0.00 0.00 4.02
204 205 1.553706 AACGGGAGACTAACGGTGAT 58.446 50.000 3.70 0.00 0.00 3.06
205 206 0.815734 ACGGGAGACTAACGGTGATG 59.184 55.000 3.70 0.00 0.00 3.07
206 207 0.102481 CGGGAGACTAACGGTGATGG 59.898 60.000 0.00 0.00 0.00 3.51
207 208 0.179081 GGGAGACTAACGGTGATGGC 60.179 60.000 0.00 0.00 0.00 4.40
208 209 0.535335 GGAGACTAACGGTGATGGCA 59.465 55.000 0.00 0.00 0.00 4.92
209 210 1.066430 GGAGACTAACGGTGATGGCAA 60.066 52.381 0.00 0.00 0.00 4.52
210 211 2.614481 GGAGACTAACGGTGATGGCAAA 60.614 50.000 0.00 0.00 0.00 3.68
211 212 3.270877 GAGACTAACGGTGATGGCAAAT 58.729 45.455 0.00 0.00 0.00 2.32
212 213 4.439057 GAGACTAACGGTGATGGCAAATA 58.561 43.478 0.00 0.00 0.00 1.40
213 214 4.839121 AGACTAACGGTGATGGCAAATAA 58.161 39.130 0.00 0.00 0.00 1.40
214 215 4.876107 AGACTAACGGTGATGGCAAATAAG 59.124 41.667 0.00 0.00 0.00 1.73
215 216 2.939460 AACGGTGATGGCAAATAAGC 57.061 45.000 0.00 0.00 0.00 3.09
216 217 1.832883 ACGGTGATGGCAAATAAGCA 58.167 45.000 0.00 0.00 35.83 3.91
217 218 2.166829 ACGGTGATGGCAAATAAGCAA 58.833 42.857 0.00 0.00 35.83 3.91
218 219 2.760092 ACGGTGATGGCAAATAAGCAAT 59.240 40.909 0.00 0.00 35.83 3.56
219 220 3.951037 ACGGTGATGGCAAATAAGCAATA 59.049 39.130 0.00 0.00 35.83 1.90
220 221 4.036734 ACGGTGATGGCAAATAAGCAATAG 59.963 41.667 0.00 0.00 35.83 1.73
221 222 4.275689 CGGTGATGGCAAATAAGCAATAGA 59.724 41.667 0.00 0.00 35.83 1.98
222 223 5.048504 CGGTGATGGCAAATAAGCAATAGAT 60.049 40.000 0.00 0.00 35.83 1.98
223 224 6.515531 CGGTGATGGCAAATAAGCAATAGATT 60.516 38.462 0.00 0.00 35.83 2.40
224 225 7.212274 GGTGATGGCAAATAAGCAATAGATTT 58.788 34.615 0.00 0.00 35.83 2.17
225 226 7.712205 GGTGATGGCAAATAAGCAATAGATTTT 59.288 33.333 0.00 0.00 35.83 1.82
226 227 8.545420 GTGATGGCAAATAAGCAATAGATTTTG 58.455 33.333 0.00 0.00 35.83 2.44
227 228 8.259411 TGATGGCAAATAAGCAATAGATTTTGT 58.741 29.630 0.00 0.00 35.83 2.83
228 229 9.101655 GATGGCAAATAAGCAATAGATTTTGTT 57.898 29.630 0.00 0.00 35.83 2.83
229 230 8.845413 TGGCAAATAAGCAATAGATTTTGTTT 57.155 26.923 0.00 0.00 34.85 2.83
230 231 8.719648 TGGCAAATAAGCAATAGATTTTGTTTG 58.280 29.630 0.00 0.00 33.05 2.93
231 232 8.720562 GGCAAATAAGCAATAGATTTTGTTTGT 58.279 29.630 9.04 0.00 33.05 2.83
232 233 9.532697 GCAAATAAGCAATAGATTTTGTTTGTG 57.467 29.630 9.04 0.00 33.05 3.33
237 238 7.481275 AGCAATAGATTTTGTTTGTGTTTGG 57.519 32.000 0.00 0.00 0.00 3.28
238 239 7.047271 AGCAATAGATTTTGTTTGTGTTTGGT 58.953 30.769 0.00 0.00 0.00 3.67
239 240 8.200792 AGCAATAGATTTTGTTTGTGTTTGGTA 58.799 29.630 0.00 0.00 0.00 3.25
240 241 8.987890 GCAATAGATTTTGTTTGTGTTTGGTAT 58.012 29.630 0.00 0.00 0.00 2.73
247 248 9.988815 ATTTTGTTTGTGTTTGGTATATAAGCA 57.011 25.926 0.00 0.00 0.00 3.91
248 249 8.804688 TTTGTTTGTGTTTGGTATATAAGCAC 57.195 30.769 10.61 10.61 38.99 4.40
249 250 7.753309 TGTTTGTGTTTGGTATATAAGCACT 57.247 32.000 15.44 0.00 39.19 4.40
250 251 7.589395 TGTTTGTGTTTGGTATATAAGCACTG 58.411 34.615 15.44 0.00 39.19 3.66
251 252 7.445707 TGTTTGTGTTTGGTATATAAGCACTGA 59.554 33.333 15.44 6.68 39.19 3.41
252 253 7.987750 TTGTGTTTGGTATATAAGCACTGAA 57.012 32.000 15.44 5.48 39.19 3.02
253 254 7.609760 TGTGTTTGGTATATAAGCACTGAAG 57.390 36.000 15.44 0.00 39.19 3.02
254 255 6.093495 TGTGTTTGGTATATAAGCACTGAAGC 59.907 38.462 15.44 0.00 39.19 3.86
263 264 2.057137 AGCACTGAAGCTTTGTTGGA 57.943 45.000 0.00 0.00 43.70 3.53
264 265 2.590821 AGCACTGAAGCTTTGTTGGAT 58.409 42.857 0.00 0.00 43.70 3.41
265 266 2.295349 AGCACTGAAGCTTTGTTGGATG 59.705 45.455 0.00 0.00 43.70 3.51
266 267 2.608752 GCACTGAAGCTTTGTTGGATGG 60.609 50.000 0.00 0.00 0.00 3.51
267 268 1.615392 ACTGAAGCTTTGTTGGATGGC 59.385 47.619 0.00 0.00 0.00 4.40
268 269 1.614903 CTGAAGCTTTGTTGGATGGCA 59.385 47.619 0.00 0.00 0.00 4.92
269 270 2.036217 CTGAAGCTTTGTTGGATGGCAA 59.964 45.455 0.00 0.00 0.00 4.52
270 271 2.433604 TGAAGCTTTGTTGGATGGCAAA 59.566 40.909 0.00 0.00 34.05 3.68
271 272 3.071312 TGAAGCTTTGTTGGATGGCAAAT 59.929 39.130 0.00 0.00 34.60 2.32
272 273 4.282957 TGAAGCTTTGTTGGATGGCAAATA 59.717 37.500 0.00 0.00 34.60 1.40
273 274 4.888326 AGCTTTGTTGGATGGCAAATAA 57.112 36.364 0.00 0.00 34.60 1.40
274 275 4.824289 AGCTTTGTTGGATGGCAAATAAG 58.176 39.130 0.00 0.00 34.60 1.73
275 276 3.371898 GCTTTGTTGGATGGCAAATAAGC 59.628 43.478 0.00 0.00 34.60 3.09
288 289 4.460948 CAAATAAGCCATTGCAGAGGTT 57.539 40.909 8.13 5.58 41.13 3.50
289 290 4.178540 CAAATAAGCCATTGCAGAGGTTG 58.821 43.478 8.13 1.64 41.13 3.77
290 291 2.584835 TAAGCCATTGCAGAGGTTGT 57.415 45.000 8.13 0.00 41.13 3.32
291 292 1.251251 AAGCCATTGCAGAGGTTGTC 58.749 50.000 8.13 0.00 41.13 3.18
292 293 0.957395 AGCCATTGCAGAGGTTGTCG 60.957 55.000 8.13 0.00 41.13 4.35
293 294 0.955428 GCCATTGCAGAGGTTGTCGA 60.955 55.000 8.13 0.00 37.47 4.20
294 295 1.742761 CCATTGCAGAGGTTGTCGAT 58.257 50.000 0.00 0.00 0.00 3.59
295 296 1.399440 CCATTGCAGAGGTTGTCGATG 59.601 52.381 0.00 0.00 0.00 3.84
296 297 1.399440 CATTGCAGAGGTTGTCGATGG 59.601 52.381 0.00 0.00 0.00 3.51
297 298 0.396435 TTGCAGAGGTTGTCGATGGT 59.604 50.000 0.00 0.00 0.00 3.55
298 299 1.262417 TGCAGAGGTTGTCGATGGTA 58.738 50.000 0.00 0.00 0.00 3.25
299 300 1.831106 TGCAGAGGTTGTCGATGGTAT 59.169 47.619 0.00 0.00 0.00 2.73
300 301 3.028130 TGCAGAGGTTGTCGATGGTATA 58.972 45.455 0.00 0.00 0.00 1.47
301 302 3.068165 TGCAGAGGTTGTCGATGGTATAG 59.932 47.826 0.00 0.00 0.00 1.31
302 303 3.318275 GCAGAGGTTGTCGATGGTATAGA 59.682 47.826 0.00 0.00 0.00 1.98
303 304 4.202121 GCAGAGGTTGTCGATGGTATAGAA 60.202 45.833 0.00 0.00 0.00 2.10
304 305 5.524284 CAGAGGTTGTCGATGGTATAGAAG 58.476 45.833 0.00 0.00 0.00 2.85
305 306 4.038162 AGAGGTTGTCGATGGTATAGAAGC 59.962 45.833 0.00 0.00 0.00 3.86
306 307 3.704566 AGGTTGTCGATGGTATAGAAGCA 59.295 43.478 0.00 0.00 40.55 3.91
307 308 4.161565 AGGTTGTCGATGGTATAGAAGCAA 59.838 41.667 0.00 0.00 39.48 3.91
308 309 5.057149 GGTTGTCGATGGTATAGAAGCAAT 58.943 41.667 0.00 0.00 39.48 3.56
309 310 5.527582 GGTTGTCGATGGTATAGAAGCAATT 59.472 40.000 0.00 0.00 39.48 2.32
310 311 6.038271 GGTTGTCGATGGTATAGAAGCAATTT 59.962 38.462 0.00 0.00 39.48 1.82
311 312 7.415206 GGTTGTCGATGGTATAGAAGCAATTTT 60.415 37.037 0.00 0.00 39.48 1.82
312 313 7.246674 TGTCGATGGTATAGAAGCAATTTTC 57.753 36.000 0.00 0.00 39.48 2.29
313 314 7.047891 TGTCGATGGTATAGAAGCAATTTTCT 58.952 34.615 0.00 0.00 39.48 2.52
314 315 7.224753 TGTCGATGGTATAGAAGCAATTTTCTC 59.775 37.037 0.00 0.00 39.48 2.87
315 316 7.439655 GTCGATGGTATAGAAGCAATTTTCTCT 59.560 37.037 0.00 0.00 39.48 3.10
316 317 8.638873 TCGATGGTATAGAAGCAATTTTCTCTA 58.361 33.333 0.00 0.00 39.48 2.43
317 318 9.429359 CGATGGTATAGAAGCAATTTTCTCTAT 57.571 33.333 0.00 1.59 39.48 1.98
349 350 2.436115 GCCGGGTGTTAGGAGCAC 60.436 66.667 2.18 0.00 36.22 4.40
386 395 1.849219 GAGAGATCGTCGTCATTGCAC 59.151 52.381 0.00 0.00 0.00 4.57
413 422 2.864343 GTGACGCTGTAGTGACAAAGTT 59.136 45.455 0.00 0.00 34.35 2.66
526 538 2.802106 CGCTCCTCCTCGTCTTCC 59.198 66.667 0.00 0.00 0.00 3.46
700 878 4.435436 CGACCGCTAGCTGTGCCA 62.435 66.667 17.12 0.00 0.00 4.92
703 881 2.187685 CCGCTAGCTGTGCCATGA 59.812 61.111 13.93 0.00 0.00 3.07
758 942 0.599558 CTCACCGTTCGTTACCCTGA 59.400 55.000 0.00 0.00 0.00 3.86
765 949 2.649831 TCGTTACCCTGACGAGCTT 58.350 52.632 0.00 0.00 43.79 3.74
774 958 1.621301 CTGACGAGCTTTGTCGCCTG 61.621 60.000 13.38 0.00 44.06 4.85
1050 1240 2.050350 GGACGTCACGATCCCCTCA 61.050 63.158 18.91 0.00 0.00 3.86
1113 1303 3.264866 GACGTTCGAGGTCGTGGCT 62.265 63.158 14.81 0.00 40.39 4.75
1332 1531 1.525995 CATAAAGGGCCACGCGGAT 60.526 57.895 12.47 0.00 0.00 4.18
1395 1594 2.672908 CTGGGCAGGCTCATGTCA 59.327 61.111 0.00 0.00 0.00 3.58
1725 1948 1.478510 GATCGCAGAAGAGAGGAACCA 59.521 52.381 0.00 0.00 43.58 3.67
1907 2182 2.488545 GTCAGAGAAGCTTACGAGGACA 59.511 50.000 0.00 0.00 0.00 4.02
2213 2489 1.340405 ACGCAAGCCCAGAAGATCAAT 60.340 47.619 0.00 0.00 45.62 2.57
2752 3081 0.445436 GAAGTCATTGACTGCTGGCG 59.555 55.000 19.65 0.00 42.59 5.69
3220 3550 0.494788 GATCGAAAGCGTCATCGTCG 59.505 55.000 0.00 0.00 39.91 5.12
3655 3985 3.388024 TGGGGAGGAGAATATGAGAAACG 59.612 47.826 0.00 0.00 0.00 3.60
4170 4501 5.651576 GCTGAAATCTCCCTTCTTTCTGATT 59.348 40.000 0.00 0.00 32.67 2.57
4261 4592 9.767228 AAATTTTGAATCTCATGTTGATTGTGA 57.233 25.926 16.90 4.93 34.67 3.58
5048 5499 4.987832 AGTCAGCTACTATTCGACTTGTG 58.012 43.478 0.34 0.00 36.36 3.33
5426 5877 3.321968 AGGATTTGAAGTTGGAGTTTGCC 59.678 43.478 0.00 0.00 0.00 4.52
5486 5937 7.340487 GGAATTGAGGTCAAGAAGGTAAATGAT 59.660 37.037 0.00 0.00 39.47 2.45
6452 6915 6.863645 CGATCTCTCTCAACTTGTACTTCAAA 59.136 38.462 0.00 0.00 35.48 2.69
6484 6947 2.039818 TAAATACAATGCGGCCCGAA 57.960 45.000 7.68 0.00 0.00 4.30
6513 6976 3.548415 GGTTCTACGCTTCGTCATAGGAG 60.548 52.174 0.00 0.00 41.54 3.69
6567 7030 1.377202 GATGTGGCAGCCGGAGAAA 60.377 57.895 5.05 0.00 0.00 2.52
6714 7177 5.576447 TGTAGACACGCTCTATCATTTCA 57.424 39.130 0.00 0.00 33.82 2.69
6719 7182 6.108687 AGACACGCTCTATCATTTCATTTCA 58.891 36.000 0.00 0.00 0.00 2.69
6740 7203 6.187727 TCACTTGTACTCCATTTTCTTCCT 57.812 37.500 0.00 0.00 0.00 3.36
6745 7208 3.140325 ACTCCATTTTCTTCCTTCGCA 57.860 42.857 0.00 0.00 0.00 5.10
6752 7215 1.939974 TTCTTCCTTCGCATCCGATG 58.060 50.000 3.82 3.82 43.97 3.84
6756 7219 4.833811 CTTCGCATCCGATGGTCA 57.166 55.556 10.41 0.00 43.97 4.02
6766 7229 3.046968 TCCGATGGTCAAACGATCAAA 57.953 42.857 0.00 0.00 33.62 2.69
6787 7254 2.740055 CGTCGCTGCAGCTTCCTT 60.740 61.111 34.22 0.00 39.32 3.36
6804 7271 0.662619 CTTCCTCTGCGCAACAACAA 59.337 50.000 13.05 0.00 0.00 2.83
6808 7275 1.601903 CCTCTGCGCAACAACAACTTA 59.398 47.619 13.05 0.00 0.00 2.24
6809 7276 2.032799 CCTCTGCGCAACAACAACTTAA 59.967 45.455 13.05 0.00 0.00 1.85
6810 7277 3.304659 CCTCTGCGCAACAACAACTTAAT 60.305 43.478 13.05 0.00 0.00 1.40
6811 7278 4.083537 CCTCTGCGCAACAACAACTTAATA 60.084 41.667 13.05 0.00 0.00 0.98
6812 7279 5.425577 TCTGCGCAACAACAACTTAATAA 57.574 34.783 13.05 0.00 0.00 1.40
6813 7280 6.007936 TCTGCGCAACAACAACTTAATAAT 57.992 33.333 13.05 0.00 0.00 1.28
6814 7281 6.442952 TCTGCGCAACAACAACTTAATAATT 58.557 32.000 13.05 0.00 0.00 1.40
6822 7289 5.854338 ACAACAACTTAATAATTTGCCGACG 59.146 36.000 3.45 0.00 0.00 5.12
6834 7301 2.813179 GCCGACGCAATGTGGCTAG 61.813 63.158 0.00 0.00 39.90 3.42
6835 7302 2.173669 CCGACGCAATGTGGCTAGG 61.174 63.158 0.00 0.00 0.00 3.02
6851 7319 3.253432 GGCTAGGGTTCAAACAAACAGAG 59.747 47.826 0.00 0.00 0.00 3.35
6913 7388 8.511465 TCTTGTTACACGTGTTAGTTCTTATC 57.489 34.615 28.55 5.76 0.00 1.75
6914 7389 8.136800 TCTTGTTACACGTGTTAGTTCTTATCA 58.863 33.333 28.55 8.42 0.00 2.15
6915 7390 8.645730 TTGTTACACGTGTTAGTTCTTATCAA 57.354 30.769 28.55 13.83 0.00 2.57
6916 7391 8.289440 TGTTACACGTGTTAGTTCTTATCAAG 57.711 34.615 28.55 0.00 0.00 3.02
6917 7392 7.383029 TGTTACACGTGTTAGTTCTTATCAAGG 59.617 37.037 28.55 0.00 0.00 3.61
6918 7393 5.850614 ACACGTGTTAGTTCTTATCAAGGT 58.149 37.500 17.22 0.00 0.00 3.50
6919 7394 5.694910 ACACGTGTTAGTTCTTATCAAGGTG 59.305 40.000 17.22 0.00 31.04 4.00
6920 7395 5.694910 CACGTGTTAGTTCTTATCAAGGTGT 59.305 40.000 7.58 0.00 0.00 4.16
6921 7396 6.864685 CACGTGTTAGTTCTTATCAAGGTGTA 59.135 38.462 7.58 0.00 0.00 2.90
6922 7397 7.383029 CACGTGTTAGTTCTTATCAAGGTGTAA 59.617 37.037 7.58 0.00 0.00 2.41
6923 7398 7.383300 ACGTGTTAGTTCTTATCAAGGTGTAAC 59.617 37.037 0.00 0.00 0.00 2.50
6924 7399 7.597743 CGTGTTAGTTCTTATCAAGGTGTAACT 59.402 37.037 0.00 0.00 36.74 2.24
6925 7400 9.269453 GTGTTAGTTCTTATCAAGGTGTAACTT 57.731 33.333 0.00 0.00 36.74 2.66
6926 7401 9.841295 TGTTAGTTCTTATCAAGGTGTAACTTT 57.159 29.630 0.00 0.00 36.10 2.66
6936 7411 5.592104 AAGGTGTAACTTTGGGAAACTTG 57.408 39.130 0.00 0.00 33.55 3.16
6937 7412 3.383505 AGGTGTAACTTTGGGAAACTTGC 59.616 43.478 0.00 0.00 36.74 4.01
6938 7413 3.131400 GGTGTAACTTTGGGAAACTTGCA 59.869 43.478 0.00 0.00 36.74 4.08
6939 7414 4.359706 GTGTAACTTTGGGAAACTTGCAG 58.640 43.478 0.00 0.00 0.00 4.41
6940 7415 4.020543 TGTAACTTTGGGAAACTTGCAGT 58.979 39.130 0.00 0.00 0.00 4.40
6941 7416 4.464597 TGTAACTTTGGGAAACTTGCAGTT 59.535 37.500 0.00 0.00 40.80 3.16
6942 7417 3.801114 ACTTTGGGAAACTTGCAGTTC 57.199 42.857 2.65 1.14 37.47 3.01
6943 7418 2.099098 ACTTTGGGAAACTTGCAGTTCG 59.901 45.455 2.65 0.00 37.47 3.95
6944 7419 1.757682 TTGGGAAACTTGCAGTTCGT 58.242 45.000 2.65 0.00 37.47 3.85
6945 7420 1.757682 TGGGAAACTTGCAGTTCGTT 58.242 45.000 2.65 0.00 37.47 3.85
6946 7421 1.673920 TGGGAAACTTGCAGTTCGTTC 59.326 47.619 2.65 0.00 37.47 3.95
6947 7422 1.673920 GGGAAACTTGCAGTTCGTTCA 59.326 47.619 2.65 0.00 37.47 3.18
6948 7423 2.287009 GGGAAACTTGCAGTTCGTTCAG 60.287 50.000 2.65 0.00 37.47 3.02
6949 7424 2.354821 GGAAACTTGCAGTTCGTTCAGT 59.645 45.455 2.65 0.00 37.47 3.41
6950 7425 3.181500 GGAAACTTGCAGTTCGTTCAGTT 60.181 43.478 2.65 0.00 37.47 3.16
6951 7426 4.412207 GAAACTTGCAGTTCGTTCAGTTT 58.588 39.130 8.27 8.27 37.47 2.66
6952 7427 4.434713 AACTTGCAGTTCGTTCAGTTTT 57.565 36.364 0.00 0.00 31.77 2.43
6953 7428 4.434713 ACTTGCAGTTCGTTCAGTTTTT 57.565 36.364 0.00 0.00 0.00 1.94
7202 7678 4.862823 GGTCTCCCCGCCTAGCCT 62.863 72.222 0.00 0.00 0.00 4.58
7582 8058 6.363065 ACTGCCATGATTGAAGATGAATAGT 58.637 36.000 0.00 0.00 0.00 2.12
7655 8193 4.490003 TGGTACAAATCACGTGCCTCGT 62.490 50.000 11.67 8.13 46.32 4.18
7672 8210 5.179368 TGCCTCGTGAGAATAAAAGTTCTTG 59.821 40.000 0.00 0.00 38.51 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.776322 TCCACCGAGCGGCAATGG 62.776 66.667 9.14 9.61 39.32 3.16
1 2 2.514592 ATCCACCGAGCGGCAATG 60.515 61.111 9.14 0.00 39.32 2.82
3 4 3.545124 AACATCCACCGAGCGGCAA 62.545 57.895 9.14 0.00 39.32 4.52
4 5 4.015406 AACATCCACCGAGCGGCA 62.015 61.111 9.14 0.00 39.32 5.69
5 6 3.499737 CAACATCCACCGAGCGGC 61.500 66.667 9.14 0.00 39.32 6.53
6 7 3.499737 GCAACATCCACCGAGCGG 61.500 66.667 7.48 7.48 42.03 5.52
7 8 3.499737 GGCAACATCCACCGAGCG 61.500 66.667 0.00 0.00 0.00 5.03
12 13 4.120331 GCAGCGGCAACATCCACC 62.120 66.667 3.18 0.00 40.72 4.61
30 31 3.936203 ATCCCCACACACGCACGT 61.936 61.111 0.00 0.00 0.00 4.49
31 32 3.422303 CATCCCCACACACGCACG 61.422 66.667 0.00 0.00 0.00 5.34
32 33 3.055719 CCATCCCCACACACGCAC 61.056 66.667 0.00 0.00 0.00 5.34
33 34 4.343323 CCCATCCCCACACACGCA 62.343 66.667 0.00 0.00 0.00 5.24
35 36 3.326578 TCCCCATCCCCACACACG 61.327 66.667 0.00 0.00 0.00 4.49
36 37 2.677228 CTCCCCATCCCCACACAC 59.323 66.667 0.00 0.00 0.00 3.82
37 38 2.613696 CCTCCCCATCCCCACACA 60.614 66.667 0.00 0.00 0.00 3.72
38 39 3.420482 CCCTCCCCATCCCCACAC 61.420 72.222 0.00 0.00 0.00 3.82
39 40 3.962530 GACCCTCCCCATCCCCACA 62.963 68.421 0.00 0.00 0.00 4.17
40 41 3.097162 GACCCTCCCCATCCCCAC 61.097 72.222 0.00 0.00 0.00 4.61
41 42 3.632049 TGACCCTCCCCATCCCCA 61.632 66.667 0.00 0.00 0.00 4.96
42 43 2.774351 CTGACCCTCCCCATCCCC 60.774 72.222 0.00 0.00 0.00 4.81
43 44 2.774351 CCTGACCCTCCCCATCCC 60.774 72.222 0.00 0.00 0.00 3.85
44 45 2.042930 ACCTGACCCTCCCCATCC 59.957 66.667 0.00 0.00 0.00 3.51
45 46 1.616628 ACACCTGACCCTCCCCATC 60.617 63.158 0.00 0.00 0.00 3.51
46 47 1.925455 CACACCTGACCCTCCCCAT 60.925 63.158 0.00 0.00 0.00 4.00
47 48 2.529136 CACACCTGACCCTCCCCA 60.529 66.667 0.00 0.00 0.00 4.96
48 49 4.035102 GCACACCTGACCCTCCCC 62.035 72.222 0.00 0.00 0.00 4.81
49 50 4.394712 CGCACACCTGACCCTCCC 62.395 72.222 0.00 0.00 0.00 4.30
50 51 3.626924 ACGCACACCTGACCCTCC 61.627 66.667 0.00 0.00 0.00 4.30
51 52 2.357517 CACGCACACCTGACCCTC 60.358 66.667 0.00 0.00 0.00 4.30
52 53 4.626081 GCACGCACACCTGACCCT 62.626 66.667 0.00 0.00 0.00 4.34
55 56 3.269347 AACGCACGCACACCTGAC 61.269 61.111 0.00 0.00 0.00 3.51
56 57 3.268603 CAACGCACGCACACCTGA 61.269 61.111 0.00 0.00 0.00 3.86
57 58 3.227372 CTCAACGCACGCACACCTG 62.227 63.158 0.00 0.00 0.00 4.00
58 59 2.967076 CTCAACGCACGCACACCT 60.967 61.111 0.00 0.00 0.00 4.00
59 60 3.223435 GACTCAACGCACGCACACC 62.223 63.158 0.00 0.00 0.00 4.16
60 61 2.245532 GACTCAACGCACGCACAC 59.754 61.111 0.00 0.00 0.00 3.82
61 62 3.326981 CGACTCAACGCACGCACA 61.327 61.111 0.00 0.00 0.00 4.57
62 63 3.327754 ACGACTCAACGCACGCAC 61.328 61.111 0.00 0.00 36.70 5.34
63 64 3.326981 CACGACTCAACGCACGCA 61.327 61.111 0.00 0.00 36.70 5.24
64 65 4.059459 CCACGACTCAACGCACGC 62.059 66.667 0.00 0.00 36.70 5.34
65 66 2.657296 ACCACGACTCAACGCACG 60.657 61.111 0.00 0.00 36.70 5.34
66 67 1.426041 AACACCACGACTCAACGCAC 61.426 55.000 0.00 0.00 36.70 5.34
67 68 1.153529 AACACCACGACTCAACGCA 60.154 52.632 0.00 0.00 36.70 5.24
68 69 1.275657 CAACACCACGACTCAACGC 59.724 57.895 0.00 0.00 36.70 4.84
69 70 0.528901 TCCAACACCACGACTCAACG 60.529 55.000 0.00 0.00 39.31 4.10
70 71 1.202486 TCTCCAACACCACGACTCAAC 60.202 52.381 0.00 0.00 0.00 3.18
71 72 1.068588 CTCTCCAACACCACGACTCAA 59.931 52.381 0.00 0.00 0.00 3.02
72 73 0.673985 CTCTCCAACACCACGACTCA 59.326 55.000 0.00 0.00 0.00 3.41
73 74 0.674534 ACTCTCCAACACCACGACTC 59.325 55.000 0.00 0.00 0.00 3.36
74 75 0.674534 GACTCTCCAACACCACGACT 59.325 55.000 0.00 0.00 0.00 4.18
75 76 0.663568 CGACTCTCCAACACCACGAC 60.664 60.000 0.00 0.00 0.00 4.34
76 77 1.658114 CGACTCTCCAACACCACGA 59.342 57.895 0.00 0.00 0.00 4.35
77 78 1.372997 CCGACTCTCCAACACCACG 60.373 63.158 0.00 0.00 0.00 4.94
78 79 1.004918 CCCGACTCTCCAACACCAC 60.005 63.158 0.00 0.00 0.00 4.16
79 80 1.458777 ACCCGACTCTCCAACACCA 60.459 57.895 0.00 0.00 0.00 4.17
80 81 1.004918 CACCCGACTCTCCAACACC 60.005 63.158 0.00 0.00 0.00 4.16
81 82 0.038159 CTCACCCGACTCTCCAACAC 60.038 60.000 0.00 0.00 0.00 3.32
82 83 1.185618 CCTCACCCGACTCTCCAACA 61.186 60.000 0.00 0.00 0.00 3.33
83 84 1.592223 CCTCACCCGACTCTCCAAC 59.408 63.158 0.00 0.00 0.00 3.77
84 85 1.609501 CCCTCACCCGACTCTCCAA 60.610 63.158 0.00 0.00 0.00 3.53
85 86 2.037367 CCCTCACCCGACTCTCCA 59.963 66.667 0.00 0.00 0.00 3.86
86 87 2.760385 CCCCTCACCCGACTCTCC 60.760 72.222 0.00 0.00 0.00 3.71
87 88 2.760385 CCCCCTCACCCGACTCTC 60.760 72.222 0.00 0.00 0.00 3.20
90 91 4.974438 TTGCCCCCTCACCCGACT 62.974 66.667 0.00 0.00 0.00 4.18
91 92 4.410400 CTTGCCCCCTCACCCGAC 62.410 72.222 0.00 0.00 0.00 4.79
92 93 4.974438 ACTTGCCCCCTCACCCGA 62.974 66.667 0.00 0.00 0.00 5.14
93 94 3.966543 AACTTGCCCCCTCACCCG 61.967 66.667 0.00 0.00 0.00 5.28
94 95 2.283173 CAACTTGCCCCCTCACCC 60.283 66.667 0.00 0.00 0.00 4.61
95 96 1.603739 GACAACTTGCCCCCTCACC 60.604 63.158 0.00 0.00 0.00 4.02
96 97 0.178990 AAGACAACTTGCCCCCTCAC 60.179 55.000 0.00 0.00 34.80 3.51
97 98 0.555769 AAAGACAACTTGCCCCCTCA 59.444 50.000 0.00 0.00 36.39 3.86
98 99 1.704641 AAAAGACAACTTGCCCCCTC 58.295 50.000 0.00 0.00 36.39 4.30
99 100 2.174685 AAAAAGACAACTTGCCCCCT 57.825 45.000 0.00 0.00 36.39 4.79
118 119 6.636562 TTTACCCTCGTTGCAGATTAAAAA 57.363 33.333 0.00 0.00 0.00 1.94
119 120 6.636562 TTTTACCCTCGTTGCAGATTAAAA 57.363 33.333 0.00 0.00 0.00 1.52
120 121 6.827586 ATTTTACCCTCGTTGCAGATTAAA 57.172 33.333 0.00 0.00 0.00 1.52
121 122 6.349777 CCAATTTTACCCTCGTTGCAGATTAA 60.350 38.462 0.00 0.00 0.00 1.40
122 123 5.124776 CCAATTTTACCCTCGTTGCAGATTA 59.875 40.000 0.00 0.00 0.00 1.75
123 124 4.082245 CCAATTTTACCCTCGTTGCAGATT 60.082 41.667 0.00 0.00 0.00 2.40
124 125 3.443681 CCAATTTTACCCTCGTTGCAGAT 59.556 43.478 0.00 0.00 0.00 2.90
125 126 2.817258 CCAATTTTACCCTCGTTGCAGA 59.183 45.455 0.00 0.00 0.00 4.26
126 127 2.817258 TCCAATTTTACCCTCGTTGCAG 59.183 45.455 0.00 0.00 0.00 4.41
127 128 2.865079 TCCAATTTTACCCTCGTTGCA 58.135 42.857 0.00 0.00 0.00 4.08
128 129 4.450082 AATCCAATTTTACCCTCGTTGC 57.550 40.909 0.00 0.00 0.00 4.17
129 130 6.926272 TGAAAAATCCAATTTTACCCTCGTTG 59.074 34.615 0.00 0.00 41.30 4.10
130 131 7.056844 TGAAAAATCCAATTTTACCCTCGTT 57.943 32.000 0.00 0.00 41.30 3.85
131 132 6.658188 TGAAAAATCCAATTTTACCCTCGT 57.342 33.333 0.00 0.00 41.30 4.18
132 133 7.375053 TCTTGAAAAATCCAATTTTACCCTCG 58.625 34.615 0.00 0.00 41.30 4.63
133 134 9.554395 TTTCTTGAAAAATCCAATTTTACCCTC 57.446 29.630 0.00 0.00 41.30 4.30
134 135 9.913310 TTTTCTTGAAAAATCCAATTTTACCCT 57.087 25.926 6.11 0.00 41.30 4.34
135 136 9.944663 GTTTTCTTGAAAAATCCAATTTTACCC 57.055 29.630 9.71 0.00 41.30 3.69
152 153 9.613428 TCTCTGTTTTCTTATCAGTTTTCTTGA 57.387 29.630 0.00 0.00 0.00 3.02
153 154 9.657121 GTCTCTGTTTTCTTATCAGTTTTCTTG 57.343 33.333 0.00 0.00 0.00 3.02
154 155 9.620259 AGTCTCTGTTTTCTTATCAGTTTTCTT 57.380 29.630 0.00 0.00 0.00 2.52
155 156 9.620259 AAGTCTCTGTTTTCTTATCAGTTTTCT 57.380 29.630 0.00 0.00 0.00 2.52
156 157 9.657121 CAAGTCTCTGTTTTCTTATCAGTTTTC 57.343 33.333 0.00 0.00 0.00 2.29
157 158 8.624776 CCAAGTCTCTGTTTTCTTATCAGTTTT 58.375 33.333 0.00 0.00 0.00 2.43
158 159 7.775561 ACCAAGTCTCTGTTTTCTTATCAGTTT 59.224 33.333 0.00 0.00 0.00 2.66
159 160 7.283329 ACCAAGTCTCTGTTTTCTTATCAGTT 58.717 34.615 0.00 0.00 0.00 3.16
160 161 6.831976 ACCAAGTCTCTGTTTTCTTATCAGT 58.168 36.000 0.00 0.00 0.00 3.41
161 162 8.713271 GTTACCAAGTCTCTGTTTTCTTATCAG 58.287 37.037 0.00 0.00 0.00 2.90
162 163 7.384115 CGTTACCAAGTCTCTGTTTTCTTATCA 59.616 37.037 0.00 0.00 0.00 2.15
163 164 7.148623 CCGTTACCAAGTCTCTGTTTTCTTATC 60.149 40.741 0.00 0.00 0.00 1.75
164 165 6.649557 CCGTTACCAAGTCTCTGTTTTCTTAT 59.350 38.462 0.00 0.00 0.00 1.73
165 166 5.987347 CCGTTACCAAGTCTCTGTTTTCTTA 59.013 40.000 0.00 0.00 0.00 2.10
166 167 4.814771 CCGTTACCAAGTCTCTGTTTTCTT 59.185 41.667 0.00 0.00 0.00 2.52
167 168 4.377897 CCGTTACCAAGTCTCTGTTTTCT 58.622 43.478 0.00 0.00 0.00 2.52
168 169 3.497262 CCCGTTACCAAGTCTCTGTTTTC 59.503 47.826 0.00 0.00 0.00 2.29
169 170 3.135167 TCCCGTTACCAAGTCTCTGTTTT 59.865 43.478 0.00 0.00 0.00 2.43
170 171 2.701951 TCCCGTTACCAAGTCTCTGTTT 59.298 45.455 0.00 0.00 0.00 2.83
171 172 2.299297 CTCCCGTTACCAAGTCTCTGTT 59.701 50.000 0.00 0.00 0.00 3.16
172 173 1.893801 CTCCCGTTACCAAGTCTCTGT 59.106 52.381 0.00 0.00 0.00 3.41
173 174 2.094649 GTCTCCCGTTACCAAGTCTCTG 60.095 54.545 0.00 0.00 0.00 3.35
174 175 2.169330 GTCTCCCGTTACCAAGTCTCT 58.831 52.381 0.00 0.00 0.00 3.10
175 176 2.169330 AGTCTCCCGTTACCAAGTCTC 58.831 52.381 0.00 0.00 0.00 3.36
176 177 2.305858 AGTCTCCCGTTACCAAGTCT 57.694 50.000 0.00 0.00 0.00 3.24
177 178 3.671702 CGTTAGTCTCCCGTTACCAAGTC 60.672 52.174 0.00 0.00 0.00 3.01
178 179 2.229784 CGTTAGTCTCCCGTTACCAAGT 59.770 50.000 0.00 0.00 0.00 3.16
179 180 2.416431 CCGTTAGTCTCCCGTTACCAAG 60.416 54.545 0.00 0.00 0.00 3.61
180 181 1.545582 CCGTTAGTCTCCCGTTACCAA 59.454 52.381 0.00 0.00 0.00 3.67
181 182 1.176527 CCGTTAGTCTCCCGTTACCA 58.823 55.000 0.00 0.00 0.00 3.25
182 183 1.135286 CACCGTTAGTCTCCCGTTACC 60.135 57.143 0.00 0.00 0.00 2.85
183 184 1.812571 TCACCGTTAGTCTCCCGTTAC 59.187 52.381 0.00 0.00 0.00 2.50
184 185 2.198827 TCACCGTTAGTCTCCCGTTA 57.801 50.000 0.00 0.00 0.00 3.18
185 186 1.203994 CATCACCGTTAGTCTCCCGTT 59.796 52.381 0.00 0.00 0.00 4.44
186 187 0.815734 CATCACCGTTAGTCTCCCGT 59.184 55.000 0.00 0.00 0.00 5.28
187 188 0.102481 CCATCACCGTTAGTCTCCCG 59.898 60.000 0.00 0.00 0.00 5.14
188 189 0.179081 GCCATCACCGTTAGTCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
189 190 0.535335 TGCCATCACCGTTAGTCTCC 59.465 55.000 0.00 0.00 0.00 3.71
190 191 2.380084 TTGCCATCACCGTTAGTCTC 57.620 50.000 0.00 0.00 0.00 3.36
191 192 2.851263 TTTGCCATCACCGTTAGTCT 57.149 45.000 0.00 0.00 0.00 3.24
192 193 4.495844 GCTTATTTGCCATCACCGTTAGTC 60.496 45.833 0.00 0.00 0.00 2.59
193 194 3.377172 GCTTATTTGCCATCACCGTTAGT 59.623 43.478 0.00 0.00 0.00 2.24
194 195 3.376859 TGCTTATTTGCCATCACCGTTAG 59.623 43.478 0.00 0.00 0.00 2.34
195 196 3.348119 TGCTTATTTGCCATCACCGTTA 58.652 40.909 0.00 0.00 0.00 3.18
196 197 2.166829 TGCTTATTTGCCATCACCGTT 58.833 42.857 0.00 0.00 0.00 4.44
197 198 1.832883 TGCTTATTTGCCATCACCGT 58.167 45.000 0.00 0.00 0.00 4.83
198 199 2.937469 TTGCTTATTTGCCATCACCG 57.063 45.000 0.00 0.00 0.00 4.94
199 200 5.772825 TCTATTGCTTATTTGCCATCACC 57.227 39.130 0.00 0.00 0.00 4.02
200 201 8.545420 CAAAATCTATTGCTTATTTGCCATCAC 58.455 33.333 0.00 0.00 0.00 3.06
201 202 8.259411 ACAAAATCTATTGCTTATTTGCCATCA 58.741 29.630 0.00 0.00 33.52 3.07
202 203 8.652810 ACAAAATCTATTGCTTATTTGCCATC 57.347 30.769 0.00 0.00 33.52 3.51
203 204 9.452287 AAACAAAATCTATTGCTTATTTGCCAT 57.548 25.926 0.00 0.00 33.52 4.40
204 205 8.719648 CAAACAAAATCTATTGCTTATTTGCCA 58.280 29.630 0.00 0.00 33.52 4.92
205 206 8.720562 ACAAACAAAATCTATTGCTTATTTGCC 58.279 29.630 0.00 0.00 31.21 4.52
206 207 9.532697 CACAAACAAAATCTATTGCTTATTTGC 57.467 29.630 0.00 0.00 31.21 3.68
211 212 9.039870 CCAAACACAAACAAAATCTATTGCTTA 57.960 29.630 0.00 0.00 33.52 3.09
212 213 7.552330 ACCAAACACAAACAAAATCTATTGCTT 59.448 29.630 0.00 0.00 33.52 3.91
213 214 7.047271 ACCAAACACAAACAAAATCTATTGCT 58.953 30.769 0.00 0.00 33.52 3.91
214 215 7.245419 ACCAAACACAAACAAAATCTATTGC 57.755 32.000 0.00 0.00 33.52 3.56
221 222 9.988815 TGCTTATATACCAAACACAAACAAAAT 57.011 25.926 0.00 0.00 0.00 1.82
222 223 9.250624 GTGCTTATATACCAAACACAAACAAAA 57.749 29.630 0.00 0.00 0.00 2.44
223 224 8.634444 AGTGCTTATATACCAAACACAAACAAA 58.366 29.630 0.00 0.00 0.00 2.83
224 225 8.079203 CAGTGCTTATATACCAAACACAAACAA 58.921 33.333 0.00 0.00 0.00 2.83
225 226 7.445707 TCAGTGCTTATATACCAAACACAAACA 59.554 33.333 0.00 0.00 0.00 2.83
226 227 7.812648 TCAGTGCTTATATACCAAACACAAAC 58.187 34.615 0.00 0.00 0.00 2.93
227 228 7.987750 TCAGTGCTTATATACCAAACACAAA 57.012 32.000 0.00 0.00 0.00 2.83
228 229 7.361713 GCTTCAGTGCTTATATACCAAACACAA 60.362 37.037 0.00 0.00 0.00 3.33
229 230 6.093495 GCTTCAGTGCTTATATACCAAACACA 59.907 38.462 0.00 0.00 0.00 3.72
230 231 6.316390 AGCTTCAGTGCTTATATACCAAACAC 59.684 38.462 0.00 0.00 40.93 3.32
231 232 6.414732 AGCTTCAGTGCTTATATACCAAACA 58.585 36.000 0.00 0.00 40.93 2.83
232 233 6.927294 AGCTTCAGTGCTTATATACCAAAC 57.073 37.500 0.00 0.00 40.93 2.93
244 245 2.057137 TCCAACAAAGCTTCAGTGCT 57.943 45.000 0.00 0.00 46.40 4.40
245 246 2.608752 CCATCCAACAAAGCTTCAGTGC 60.609 50.000 0.00 0.00 0.00 4.40
246 247 2.608752 GCCATCCAACAAAGCTTCAGTG 60.609 50.000 0.00 0.00 0.00 3.66
247 248 1.615392 GCCATCCAACAAAGCTTCAGT 59.385 47.619 0.00 0.00 0.00 3.41
248 249 1.614903 TGCCATCCAACAAAGCTTCAG 59.385 47.619 0.00 0.00 0.00 3.02
249 250 1.702182 TGCCATCCAACAAAGCTTCA 58.298 45.000 0.00 0.00 0.00 3.02
250 251 2.818130 TTGCCATCCAACAAAGCTTC 57.182 45.000 0.00 0.00 0.00 3.86
251 252 3.775261 ATTTGCCATCCAACAAAGCTT 57.225 38.095 0.00 0.00 39.01 3.74
252 253 4.824289 CTTATTTGCCATCCAACAAAGCT 58.176 39.130 0.00 0.00 39.01 3.74
253 254 3.371898 GCTTATTTGCCATCCAACAAAGC 59.628 43.478 0.00 0.00 40.89 3.51
266 267 2.167075 ACCTCTGCAATGGCTTATTTGC 59.833 45.455 4.71 0.88 41.91 3.68
267 268 4.178540 CAACCTCTGCAATGGCTTATTTG 58.821 43.478 4.71 0.00 41.91 2.32
268 269 3.834231 ACAACCTCTGCAATGGCTTATTT 59.166 39.130 4.71 0.00 41.91 1.40
269 270 3.434309 ACAACCTCTGCAATGGCTTATT 58.566 40.909 4.71 0.00 41.91 1.40
270 271 3.019564 GACAACCTCTGCAATGGCTTAT 58.980 45.455 4.71 0.00 41.91 1.73
271 272 2.436417 GACAACCTCTGCAATGGCTTA 58.564 47.619 4.71 0.00 41.91 3.09
272 273 1.251251 GACAACCTCTGCAATGGCTT 58.749 50.000 4.71 0.00 41.91 4.35
273 274 0.957395 CGACAACCTCTGCAATGGCT 60.957 55.000 4.71 0.00 41.91 4.75
274 275 0.955428 TCGACAACCTCTGCAATGGC 60.955 55.000 4.71 0.00 41.68 4.40
275 276 1.399440 CATCGACAACCTCTGCAATGG 59.601 52.381 3.36 3.36 0.00 3.16
276 277 1.399440 CCATCGACAACCTCTGCAATG 59.601 52.381 0.00 0.00 0.00 2.82
277 278 1.003580 ACCATCGACAACCTCTGCAAT 59.996 47.619 0.00 0.00 0.00 3.56
278 279 0.396435 ACCATCGACAACCTCTGCAA 59.604 50.000 0.00 0.00 0.00 4.08
279 280 1.262417 TACCATCGACAACCTCTGCA 58.738 50.000 0.00 0.00 0.00 4.41
280 281 2.604046 ATACCATCGACAACCTCTGC 57.396 50.000 0.00 0.00 0.00 4.26
281 282 5.515797 TTCTATACCATCGACAACCTCTG 57.484 43.478 0.00 0.00 0.00 3.35
282 283 4.038162 GCTTCTATACCATCGACAACCTCT 59.962 45.833 0.00 0.00 0.00 3.69
283 284 4.202121 TGCTTCTATACCATCGACAACCTC 60.202 45.833 0.00 0.00 0.00 3.85
284 285 3.704566 TGCTTCTATACCATCGACAACCT 59.295 43.478 0.00 0.00 0.00 3.50
285 286 4.054780 TGCTTCTATACCATCGACAACC 57.945 45.455 0.00 0.00 0.00 3.77
286 287 6.604735 AATTGCTTCTATACCATCGACAAC 57.395 37.500 0.00 0.00 0.00 3.32
287 288 7.552687 AGAAAATTGCTTCTATACCATCGACAA 59.447 33.333 0.00 0.00 33.81 3.18
288 289 7.047891 AGAAAATTGCTTCTATACCATCGACA 58.952 34.615 0.00 0.00 33.81 4.35
289 290 7.439655 AGAGAAAATTGCTTCTATACCATCGAC 59.560 37.037 0.00 0.00 35.76 4.20
290 291 7.500992 AGAGAAAATTGCTTCTATACCATCGA 58.499 34.615 0.00 0.00 35.76 3.59
291 292 7.721286 AGAGAAAATTGCTTCTATACCATCG 57.279 36.000 0.00 0.00 35.76 3.84
304 305 9.631452 GGCCTGATTAATTATAGAGAAAATTGC 57.369 33.333 0.00 0.00 0.00 3.56
307 308 9.018582 GCTGGCCTGATTAATTATAGAGAAAAT 57.981 33.333 14.77 0.00 0.00 1.82
308 309 7.448469 GGCTGGCCTGATTAATTATAGAGAAAA 59.552 37.037 14.77 0.00 0.00 2.29
309 310 6.942576 GGCTGGCCTGATTAATTATAGAGAAA 59.057 38.462 14.77 0.00 0.00 2.52
310 311 6.476378 GGCTGGCCTGATTAATTATAGAGAA 58.524 40.000 14.77 0.00 0.00 2.87
311 312 5.337571 CGGCTGGCCTGATTAATTATAGAGA 60.338 44.000 14.77 0.00 0.00 3.10
312 313 4.872691 CGGCTGGCCTGATTAATTATAGAG 59.127 45.833 14.77 0.00 0.00 2.43
313 314 4.323485 CCGGCTGGCCTGATTAATTATAGA 60.323 45.833 14.77 0.00 0.00 1.98
314 315 3.941483 CCGGCTGGCCTGATTAATTATAG 59.059 47.826 14.77 0.00 0.00 1.31
315 316 3.308117 CCCGGCTGGCCTGATTAATTATA 60.308 47.826 14.77 0.00 0.00 0.98
316 317 2.555227 CCCGGCTGGCCTGATTAATTAT 60.555 50.000 14.77 0.00 0.00 1.28
317 318 1.202879 CCCGGCTGGCCTGATTAATTA 60.203 52.381 14.77 0.00 0.00 1.40
318 319 0.468029 CCCGGCTGGCCTGATTAATT 60.468 55.000 14.77 0.00 0.00 1.40
319 320 1.151450 CCCGGCTGGCCTGATTAAT 59.849 57.895 14.77 0.00 0.00 1.40
320 321 2.305607 ACCCGGCTGGCCTGATTAA 61.306 57.895 14.77 0.00 37.83 1.40
321 322 2.690881 ACCCGGCTGGCCTGATTA 60.691 61.111 14.77 0.00 37.83 1.75
322 323 4.431131 CACCCGGCTGGCCTGATT 62.431 66.667 14.77 0.00 37.83 2.57
349 350 6.630444 ATCTCTCGGATCAATTTGATTTGG 57.370 37.500 12.96 6.23 37.20 3.28
386 395 1.130561 TCACTACAGCGTCACTCATCG 59.869 52.381 0.00 0.00 0.00 3.84
526 538 1.804326 GGTCGTCGATCGGTTGGTG 60.804 63.158 16.41 0.00 40.32 4.17
582 760 2.176247 CCATAGGGTGGTAGGACACT 57.824 55.000 0.00 0.00 43.44 3.55
700 878 1.740380 CGACGTCATGGCTTCCTTCAT 60.740 52.381 17.16 0.00 0.00 2.57
703 881 1.741770 GCGACGTCATGGCTTCCTT 60.742 57.895 17.16 0.00 0.00 3.36
758 942 1.373497 CTCAGGCGACAAAGCTCGT 60.373 57.895 0.00 0.00 35.99 4.18
985 1175 1.264749 TGCATCTGGGACCTTAGCGT 61.265 55.000 0.00 0.00 0.00 5.07
990 1180 1.566298 GGACCTGCATCTGGGACCTT 61.566 60.000 4.34 0.00 0.00 3.50
1094 1284 2.640989 CCACGACCTCGAACGTCA 59.359 61.111 11.62 0.00 43.02 4.35
1221 1420 1.227147 GTTGCCATAGTAGCCGCGA 60.227 57.895 8.23 0.00 0.00 5.87
1332 1531 4.081254 GCATCCATCAGCAGATCCAGTATA 60.081 45.833 0.00 0.00 30.20 1.47
1395 1594 3.152400 GCGTGGTACCTCGGGGAT 61.152 66.667 31.13 0.00 36.25 3.85
1725 1948 3.295093 TGATTGCCTCTCTCTCGATCTT 58.705 45.455 0.00 0.00 0.00 2.40
1782 2006 3.576356 CATGGTGGATGCGGACGC 61.576 66.667 10.13 10.13 42.35 5.19
2213 2489 2.782222 GGTGAGCGCCATCCTCGTA 61.782 63.158 2.29 0.00 31.98 3.43
2573 2851 3.545124 CTGGTTACCACTGCGCCCA 62.545 63.158 4.18 0.43 0.00 5.36
2752 3081 1.603172 CGAAGTCCTCATCATACCGGC 60.603 57.143 0.00 0.00 0.00 6.13
3655 3985 2.415512 ACGCTACGGAAGAAAGAATTGC 59.584 45.455 0.00 0.00 0.00 3.56
4170 4501 4.342378 CCCGTGATCAGGAGAAGATAAAGA 59.658 45.833 16.84 0.00 0.00 2.52
4261 4592 5.018809 ACATAAAATCATGACCTGTGGCTT 58.981 37.500 0.00 0.00 0.00 4.35
5048 5499 5.008118 GCCTCTGGAAATAGCAATAGACAAC 59.992 44.000 0.00 0.00 0.00 3.32
5426 5877 5.994250 TGTAGATCTCCCAAATCTTTGAGG 58.006 41.667 0.00 4.49 40.55 3.86
5486 5937 6.109156 TCTCTTGTGTAAGAAGTATGCCAA 57.891 37.500 0.00 0.00 42.11 4.52
6452 6915 7.307751 CCGCATTGTATTTATATGACCGAAGTT 60.308 37.037 0.00 0.00 0.00 2.66
6484 6947 2.140717 CGAAGCGTAGAACCCTTTGTT 58.859 47.619 0.00 0.00 40.81 2.83
6567 7030 2.200337 GCAGAAAAACCCCACCGCT 61.200 57.895 0.00 0.00 0.00 5.52
6579 7042 2.904866 GGGCACACCACGCAGAAA 60.905 61.111 0.00 0.00 39.85 2.52
6600 7063 2.438434 CCGTCCTTCCCCATGCAC 60.438 66.667 0.00 0.00 0.00 4.57
6714 7177 7.725844 AGGAAGAAAATGGAGTACAAGTGAAAT 59.274 33.333 0.00 0.00 0.00 2.17
6719 7182 5.701290 CGAAGGAAGAAAATGGAGTACAAGT 59.299 40.000 0.00 0.00 0.00 3.16
6740 7203 1.083489 GTTTGACCATCGGATGCGAA 58.917 50.000 14.89 3.67 0.00 4.70
6745 7208 2.979814 TGATCGTTTGACCATCGGAT 57.020 45.000 0.00 0.00 0.00 4.18
6752 7215 2.140717 ACGGAGTTTGATCGTTTGACC 58.859 47.619 0.00 0.00 37.78 4.02
6787 7254 0.463654 AGTTGTTGTTGCGCAGAGGA 60.464 50.000 11.31 0.00 0.00 3.71
6822 7289 1.544724 TTGAACCCTAGCCACATTGC 58.455 50.000 0.00 0.00 0.00 3.56
6832 7299 5.105567 TGACTCTGTTTGTTTGAACCCTA 57.894 39.130 0.00 0.00 0.00 3.53
6834 7301 4.918810 ATGACTCTGTTTGTTTGAACCC 57.081 40.909 0.00 0.00 0.00 4.11
6835 7302 5.907391 CGTTATGACTCTGTTTGTTTGAACC 59.093 40.000 0.00 0.00 0.00 3.62
6851 7319 5.291858 ACATCACATCACATCACGTTATGAC 59.708 40.000 16.35 0.00 41.24 3.06
6891 7366 7.383029 CCTTGATAAGAACTAACACGTGTAACA 59.617 37.037 23.69 9.45 35.74 2.41
6896 7371 5.694910 ACACCTTGATAAGAACTAACACGTG 59.305 40.000 15.48 15.48 0.00 4.49
6897 7372 5.850614 ACACCTTGATAAGAACTAACACGT 58.149 37.500 0.00 0.00 0.00 4.49
6899 7374 8.828688 AGTTACACCTTGATAAGAACTAACAC 57.171 34.615 0.00 0.00 0.00 3.32
6900 7375 9.841295 AAAGTTACACCTTGATAAGAACTAACA 57.159 29.630 0.00 0.00 0.00 2.41
6902 7377 9.280174 CCAAAGTTACACCTTGATAAGAACTAA 57.720 33.333 0.00 0.00 0.00 2.24
6903 7378 7.881232 CCCAAAGTTACACCTTGATAAGAACTA 59.119 37.037 0.00 0.00 0.00 2.24
6904 7379 6.715264 CCCAAAGTTACACCTTGATAAGAACT 59.285 38.462 0.00 0.00 0.00 3.01
6905 7380 6.713450 TCCCAAAGTTACACCTTGATAAGAAC 59.287 38.462 0.00 0.00 0.00 3.01
6906 7381 6.843752 TCCCAAAGTTACACCTTGATAAGAA 58.156 36.000 0.00 0.00 0.00 2.52
6907 7382 6.442541 TCCCAAAGTTACACCTTGATAAGA 57.557 37.500 0.00 0.00 0.00 2.10
6908 7383 7.230712 AGTTTCCCAAAGTTACACCTTGATAAG 59.769 37.037 0.00 0.00 0.00 1.73
6909 7384 7.064229 AGTTTCCCAAAGTTACACCTTGATAA 58.936 34.615 0.00 0.00 0.00 1.75
6910 7385 6.607019 AGTTTCCCAAAGTTACACCTTGATA 58.393 36.000 0.00 0.00 0.00 2.15
6911 7386 5.454966 AGTTTCCCAAAGTTACACCTTGAT 58.545 37.500 0.00 0.00 0.00 2.57
6912 7387 4.862371 AGTTTCCCAAAGTTACACCTTGA 58.138 39.130 0.00 0.00 0.00 3.02
6913 7388 5.348164 CAAGTTTCCCAAAGTTACACCTTG 58.652 41.667 0.00 0.00 32.94 3.61
6914 7389 4.142026 GCAAGTTTCCCAAAGTTACACCTT 60.142 41.667 0.00 0.00 32.94 3.50
6915 7390 3.383505 GCAAGTTTCCCAAAGTTACACCT 59.616 43.478 0.00 0.00 32.94 4.00
6916 7391 3.131400 TGCAAGTTTCCCAAAGTTACACC 59.869 43.478 0.00 0.00 32.94 4.16
6917 7392 4.359706 CTGCAAGTTTCCCAAAGTTACAC 58.640 43.478 0.00 0.00 32.94 2.90
6918 7393 4.647424 CTGCAAGTTTCCCAAAGTTACA 57.353 40.909 0.00 0.00 32.94 2.41
6957 7432 1.630878 GAGGAGGAGGAGGAGCAAAAA 59.369 52.381 0.00 0.00 0.00 1.94
6958 7433 1.280457 GAGGAGGAGGAGGAGCAAAA 58.720 55.000 0.00 0.00 0.00 2.44
6959 7434 0.618968 GGAGGAGGAGGAGGAGCAAA 60.619 60.000 0.00 0.00 0.00 3.68
6960 7435 1.002274 GGAGGAGGAGGAGGAGCAA 59.998 63.158 0.00 0.00 0.00 3.91
6961 7436 1.815384 TTGGAGGAGGAGGAGGAGCA 61.815 60.000 0.00 0.00 0.00 4.26
6962 7437 1.002274 TTGGAGGAGGAGGAGGAGC 59.998 63.158 0.00 0.00 0.00 4.70
7663 8201 4.552767 CGCACGAAGATTCACAAGAACTTT 60.553 41.667 0.00 0.00 36.39 2.66
7672 8210 0.234625 TGCAACGCACGAAGATTCAC 59.765 50.000 0.00 0.00 31.71 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.