Multiple sequence alignment - TraesCS2B01G072700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G072700 chr2B 100.000 3026 0 0 1 3026 39092054 39089029 0.000000e+00 5589.0
1 TraesCS2B01G072700 chr2B 93.933 1368 64 7 688 2040 38421981 38420618 0.000000e+00 2049.0
2 TraesCS2B01G072700 chr2B 91.935 1240 72 11 801 2027 38050323 38049099 0.000000e+00 1711.0
3 TraesCS2B01G072700 chr2B 87.929 903 46 31 2156 3026 38420521 38419650 0.000000e+00 1005.0
4 TraesCS2B01G072700 chr2B 84.427 1021 139 14 997 2010 39333281 39334288 0.000000e+00 987.0
5 TraesCS2B01G072700 chr2B 84.107 1013 137 18 998 1996 39158986 39157984 0.000000e+00 957.0
6 TraesCS2B01G072700 chr2B 95.152 330 14 2 2156 2484 38090579 38090251 1.240000e-143 520.0
7 TraesCS2B01G072700 chr2B 80.259 309 44 10 300 591 39153713 39153405 1.830000e-52 217.0
8 TraesCS2B01G072700 chr2B 84.932 219 12 7 413 630 38431135 38430937 5.120000e-48 202.0
9 TraesCS2B01G072700 chr2B 87.037 108 11 3 300 405 38431288 38431182 5.300000e-23 119.0
10 TraesCS2B01G072700 chr2D 90.435 1401 96 22 652 2027 22795367 22796754 0.000000e+00 1810.0
11 TraesCS2B01G072700 chr2D 84.289 1012 131 18 998 1996 22785756 22786752 0.000000e+00 963.0
12 TraesCS2B01G072700 chr2D 81.958 715 59 41 2347 3026 22817144 22817823 2.650000e-150 542.0
13 TraesCS2B01G072700 chr2D 97.297 111 1 2 2156 2264 22797030 22797140 1.430000e-43 187.0
14 TraesCS2B01G072700 chr2D 85.535 159 13 3 496 645 22793713 22793870 1.120000e-34 158.0
15 TraesCS2B01G072700 chr2D 90.426 94 8 1 313 405 22793531 22793624 4.100000e-24 122.0
16 TraesCS2B01G072700 chr2A 90.735 1360 89 22 692 2027 24406933 24408279 0.000000e+00 1779.0
17 TraesCS2B01G072700 chr2A 84.692 1006 139 10 997 1999 24181949 24180956 0.000000e+00 990.0
18 TraesCS2B01G072700 chr2A 84.290 923 123 14 1101 2010 24277567 24276654 0.000000e+00 881.0
19 TraesCS2B01G072700 chr2A 82.842 915 72 37 2156 3026 24408514 24409387 0.000000e+00 741.0
20 TraesCS2B01G072700 chr2A 92.929 99 3 1 2067 2161 24408388 24408486 1.130000e-29 141.0
21 TraesCS2B01G072700 chrUn 93.269 104 6 1 2 105 74686886 74686784 5.230000e-33 152.0
22 TraesCS2B01G072700 chr1A 91.429 105 9 0 1 105 53442811 53442915 8.740000e-31 145.0
23 TraesCS2B01G072700 chr1A 81.457 151 23 5 2879 3026 562447783 562447635 5.300000e-23 119.0
24 TraesCS2B01G072700 chr4B 88.696 115 11 1 4 116 571617759 571617645 4.070000e-29 139.0
25 TraesCS2B01G072700 chr6A 89.623 106 10 1 1 106 579806326 579806430 1.890000e-27 134.0
26 TraesCS2B01G072700 chr6A 83.117 77 8 5 2408 2482 30727279 30727206 7.000000e-07 65.8
27 TraesCS2B01G072700 chr5A 89.524 105 11 0 1 105 64376633 64376737 1.890000e-27 134.0
28 TraesCS2B01G072700 chr3A 88.679 106 12 0 1 106 511745199 511745304 2.450000e-26 130.0
29 TraesCS2B01G072700 chr3A 95.385 65 3 0 41 105 234218709 234218645 1.480000e-18 104.0
30 TraesCS2B01G072700 chr6B 88.571 105 12 0 1 105 204180139 204180035 8.810000e-26 128.0
31 TraesCS2B01G072700 chr6B 88.571 105 11 1 1 105 166128882 166128985 3.170000e-25 126.0
32 TraesCS2B01G072700 chr6B 81.250 128 20 3 2902 3026 701623556 701623430 1.920000e-17 100.0
33 TraesCS2B01G072700 chr1D 83.333 72 9 3 2406 2476 459875203 459875272 2.520000e-06 63.9
34 TraesCS2B01G072700 chr1D 81.944 72 10 3 2412 2482 298551647 298551578 1.170000e-04 58.4
35 TraesCS2B01G072700 chr3D 80.769 78 13 1 2406 2483 549063777 549063852 3.260000e-05 60.2
36 TraesCS2B01G072700 chr4D 81.944 72 10 3 2406 2476 369890946 369891015 1.170000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G072700 chr2B 39089029 39092054 3025 True 5589.00 5589 100.000000 1 3026 1 chr2B.!!$R3 3025
1 TraesCS2B01G072700 chr2B 38049099 38050323 1224 True 1711.00 1711 91.935000 801 2027 1 chr2B.!!$R1 1226
2 TraesCS2B01G072700 chr2B 38419650 38421981 2331 True 1527.00 2049 90.931000 688 3026 2 chr2B.!!$R6 2338
3 TraesCS2B01G072700 chr2B 39333281 39334288 1007 False 987.00 987 84.427000 997 2010 1 chr2B.!!$F1 1013
4 TraesCS2B01G072700 chr2B 39157984 39158986 1002 True 957.00 957 84.107000 998 1996 1 chr2B.!!$R5 998
5 TraesCS2B01G072700 chr2D 22785756 22786752 996 False 963.00 963 84.289000 998 1996 1 chr2D.!!$F1 998
6 TraesCS2B01G072700 chr2D 22793531 22797140 3609 False 569.25 1810 90.923250 313 2264 4 chr2D.!!$F3 1951
7 TraesCS2B01G072700 chr2D 22817144 22817823 679 False 542.00 542 81.958000 2347 3026 1 chr2D.!!$F2 679
8 TraesCS2B01G072700 chr2A 24180956 24181949 993 True 990.00 990 84.692000 997 1999 1 chr2A.!!$R1 1002
9 TraesCS2B01G072700 chr2A 24406933 24409387 2454 False 887.00 1779 88.835333 692 3026 3 chr2A.!!$F1 2334
10 TraesCS2B01G072700 chr2A 24276654 24277567 913 True 881.00 881 84.290000 1101 2010 1 chr2A.!!$R2 909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 409 0.032017 GGACAGAGGAGGAGGGCTTA 60.032 60.0 0.00 0.0 0.00 3.09 F
486 516 0.319900 ACATAGCGGACGCATCATCC 60.320 55.0 19.48 0.0 44.88 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1326 2911 1.953231 GCTTGGCTTTGGATGCTCCC 61.953 60.0 0.5 0.0 35.03 4.30 R
2442 4204 1.878953 AAAGTGGGTTCAGTAGCACG 58.121 50.0 0.0 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.578776 CGAAAAAGCTTGTCCTAAACTTGT 58.421 37.500 0.00 0.00 0.00 3.16
24 25 6.033966 CGAAAAAGCTTGTCCTAAACTTGTT 58.966 36.000 0.00 0.00 0.00 2.83
25 26 6.196538 CGAAAAAGCTTGTCCTAAACTTGTTC 59.803 38.462 0.00 0.00 33.25 3.18
26 27 5.515797 AAAGCTTGTCCTAAACTTGTTCC 57.484 39.130 0.00 0.00 0.00 3.62
27 28 4.439253 AGCTTGTCCTAAACTTGTTCCT 57.561 40.909 0.00 0.00 0.00 3.36
28 29 4.390264 AGCTTGTCCTAAACTTGTTCCTC 58.610 43.478 0.00 0.00 0.00 3.71
29 30 4.134563 GCTTGTCCTAAACTTGTTCCTCA 58.865 43.478 0.00 0.00 0.00 3.86
30 31 4.578928 GCTTGTCCTAAACTTGTTCCTCAA 59.421 41.667 0.00 0.00 34.61 3.02
31 32 5.067283 GCTTGTCCTAAACTTGTTCCTCAAA 59.933 40.000 0.00 0.00 35.48 2.69
32 33 6.239036 GCTTGTCCTAAACTTGTTCCTCAAAT 60.239 38.462 0.00 0.00 35.48 2.32
33 34 6.633500 TGTCCTAAACTTGTTCCTCAAATG 57.367 37.500 0.00 0.00 35.48 2.32
34 35 5.534654 TGTCCTAAACTTGTTCCTCAAATGG 59.465 40.000 0.00 0.00 35.48 3.16
35 36 5.768164 GTCCTAAACTTGTTCCTCAAATGGA 59.232 40.000 0.00 0.00 35.48 3.41
36 37 6.434340 GTCCTAAACTTGTTCCTCAAATGGAT 59.566 38.462 0.00 0.00 35.83 3.41
37 38 6.434028 TCCTAAACTTGTTCCTCAAATGGATG 59.566 38.462 0.00 0.00 35.83 3.51
38 39 6.209391 CCTAAACTTGTTCCTCAAATGGATGT 59.791 38.462 0.00 0.00 35.83 3.06
39 40 7.393234 CCTAAACTTGTTCCTCAAATGGATGTA 59.607 37.037 0.00 0.00 35.83 2.29
40 41 6.575162 AACTTGTTCCTCAAATGGATGTAC 57.425 37.500 0.00 0.00 35.83 2.90
41 42 5.010282 ACTTGTTCCTCAAATGGATGTACC 58.990 41.667 0.00 0.00 35.83 3.34
42 43 4.927267 TGTTCCTCAAATGGATGTACCT 57.073 40.909 0.00 0.00 39.86 3.08
43 44 6.012858 ACTTGTTCCTCAAATGGATGTACCTA 60.013 38.462 0.00 0.00 36.19 3.08
44 45 5.989477 TGTTCCTCAAATGGATGTACCTAG 58.011 41.667 0.00 0.00 39.86 3.02
45 46 4.689612 TCCTCAAATGGATGTACCTAGC 57.310 45.455 0.00 0.00 39.86 3.42
46 47 4.037222 TCCTCAAATGGATGTACCTAGCA 58.963 43.478 0.00 0.00 39.86 3.49
47 48 4.130118 CCTCAAATGGATGTACCTAGCAC 58.870 47.826 0.00 0.00 39.86 4.40
48 49 4.141620 CCTCAAATGGATGTACCTAGCACT 60.142 45.833 0.00 0.00 39.86 4.40
49 50 5.070446 CCTCAAATGGATGTACCTAGCACTA 59.930 44.000 0.00 0.00 39.86 2.74
50 51 6.408092 CCTCAAATGGATGTACCTAGCACTAA 60.408 42.308 0.00 0.00 39.86 2.24
51 52 6.346096 TCAAATGGATGTACCTAGCACTAAC 58.654 40.000 0.00 0.00 39.86 2.34
52 53 6.156256 TCAAATGGATGTACCTAGCACTAACT 59.844 38.462 0.00 0.00 39.86 2.24
53 54 6.561519 AATGGATGTACCTAGCACTAACTT 57.438 37.500 0.00 0.00 39.86 2.66
54 55 5.339008 TGGATGTACCTAGCACTAACTTG 57.661 43.478 0.00 0.00 39.86 3.16
55 56 5.020795 TGGATGTACCTAGCACTAACTTGA 58.979 41.667 0.00 0.00 39.86 3.02
56 57 5.661312 TGGATGTACCTAGCACTAACTTGAT 59.339 40.000 0.00 0.00 39.86 2.57
57 58 5.986135 GGATGTACCTAGCACTAACTTGATG 59.014 44.000 0.00 0.00 35.41 3.07
58 59 4.755411 TGTACCTAGCACTAACTTGATGC 58.245 43.478 0.00 0.00 39.74 3.91
69 70 8.233692 GCACTAACTTGATGCTAGATACATAC 57.766 38.462 0.00 0.00 36.40 2.39
70 71 7.867909 GCACTAACTTGATGCTAGATACATACA 59.132 37.037 0.00 0.00 36.40 2.29
71 72 9.920133 CACTAACTTGATGCTAGATACATACAT 57.080 33.333 0.00 0.00 0.00 2.29
75 76 9.836864 AACTTGATGCTAGATACATACATTTGA 57.163 29.630 0.00 0.00 0.00 2.69
76 77 9.486497 ACTTGATGCTAGATACATACATTTGAG 57.514 33.333 0.00 0.00 0.00 3.02
77 78 8.837788 TTGATGCTAGATACATACATTTGAGG 57.162 34.615 0.00 0.00 0.00 3.86
78 79 7.389232 TGATGCTAGATACATACATTTGAGGG 58.611 38.462 0.00 0.00 0.00 4.30
79 80 6.994421 TGCTAGATACATACATTTGAGGGA 57.006 37.500 0.00 0.00 0.00 4.20
80 81 6.759272 TGCTAGATACATACATTTGAGGGAC 58.241 40.000 0.00 0.00 0.00 4.46
81 82 6.326323 TGCTAGATACATACATTTGAGGGACA 59.674 38.462 0.00 0.00 0.00 4.02
82 83 7.147567 TGCTAGATACATACATTTGAGGGACAA 60.148 37.037 0.00 0.00 36.65 3.18
83 84 7.386299 GCTAGATACATACATTTGAGGGACAAG 59.614 40.741 0.00 0.00 39.77 3.16
84 85 7.200434 AGATACATACATTTGAGGGACAAGT 57.800 36.000 0.00 0.00 39.77 3.16
85 86 7.633789 AGATACATACATTTGAGGGACAAGTT 58.366 34.615 0.00 0.00 39.77 2.66
86 87 8.109634 AGATACATACATTTGAGGGACAAGTTT 58.890 33.333 0.00 0.00 39.77 2.66
87 88 6.976934 ACATACATTTGAGGGACAAGTTTT 57.023 33.333 0.00 0.00 39.77 2.43
88 89 7.360113 ACATACATTTGAGGGACAAGTTTTT 57.640 32.000 0.00 0.00 39.77 1.94
105 106 2.845363 TTTTTGGACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
106 107 0.604578 TTTTGGACGGAGGGAGTACG 59.395 55.000 0.00 0.00 0.00 3.67
107 108 0.540365 TTTGGACGGAGGGAGTACGT 60.540 55.000 0.00 0.00 44.35 3.57
108 109 1.246056 TTGGACGGAGGGAGTACGTG 61.246 60.000 0.00 0.00 41.40 4.49
109 110 1.377725 GGACGGAGGGAGTACGTGA 60.378 63.158 0.00 0.00 41.40 4.35
110 111 0.962356 GGACGGAGGGAGTACGTGAA 60.962 60.000 0.00 0.00 41.40 3.18
111 112 0.883833 GACGGAGGGAGTACGTGAAA 59.116 55.000 0.00 0.00 41.40 2.69
112 113 0.600057 ACGGAGGGAGTACGTGAAAC 59.400 55.000 0.00 0.00 39.64 2.78
113 114 0.599558 CGGAGGGAGTACGTGAAACA 59.400 55.000 0.00 0.00 35.74 2.83
114 115 1.203994 CGGAGGGAGTACGTGAAACAT 59.796 52.381 0.00 0.00 35.74 2.71
115 116 2.618053 GGAGGGAGTACGTGAAACATG 58.382 52.381 0.00 0.00 35.74 3.21
116 117 2.000447 GAGGGAGTACGTGAAACATGC 59.000 52.381 0.00 0.00 35.74 4.06
117 118 1.346395 AGGGAGTACGTGAAACATGCA 59.654 47.619 0.00 0.00 35.74 3.96
118 119 2.027192 AGGGAGTACGTGAAACATGCAT 60.027 45.455 0.00 0.00 35.74 3.96
119 120 2.351726 GGGAGTACGTGAAACATGCATC 59.648 50.000 0.00 0.00 35.74 3.91
120 121 3.000041 GGAGTACGTGAAACATGCATCA 59.000 45.455 0.00 0.00 35.74 3.07
121 122 3.062639 GGAGTACGTGAAACATGCATCAG 59.937 47.826 0.00 0.00 35.74 2.90
122 123 2.416547 AGTACGTGAAACATGCATCAGC 59.583 45.455 0.00 0.00 37.92 4.26
123 124 0.523072 ACGTGAAACATGCATCAGCC 59.477 50.000 0.00 0.00 36.76 4.85
124 125 0.522626 CGTGAAACATGCATCAGCCA 59.477 50.000 0.00 0.00 36.76 4.75
125 126 1.068402 CGTGAAACATGCATCAGCCAA 60.068 47.619 0.00 0.00 36.76 4.52
126 127 2.607526 CGTGAAACATGCATCAGCCAAA 60.608 45.455 0.00 0.00 36.76 3.28
127 128 3.391965 GTGAAACATGCATCAGCCAAAA 58.608 40.909 0.00 0.00 36.91 2.44
128 129 3.808726 GTGAAACATGCATCAGCCAAAAA 59.191 39.130 0.00 0.00 36.91 1.94
129 130 4.059511 TGAAACATGCATCAGCCAAAAAG 58.940 39.130 0.00 0.00 41.13 2.27
130 131 4.202233 TGAAACATGCATCAGCCAAAAAGA 60.202 37.500 0.00 0.00 41.13 2.52
131 132 3.587797 ACATGCATCAGCCAAAAAGAG 57.412 42.857 0.00 0.00 41.13 2.85
132 133 2.895404 ACATGCATCAGCCAAAAAGAGT 59.105 40.909 0.00 0.00 41.13 3.24
133 134 3.057033 ACATGCATCAGCCAAAAAGAGTC 60.057 43.478 0.00 0.00 41.13 3.36
134 135 2.585330 TGCATCAGCCAAAAAGAGTCA 58.415 42.857 0.00 0.00 41.13 3.41
135 136 2.294233 TGCATCAGCCAAAAAGAGTCAC 59.706 45.455 0.00 0.00 41.13 3.67
136 137 2.555757 GCATCAGCCAAAAAGAGTCACT 59.444 45.455 0.00 0.00 33.58 3.41
137 138 3.611057 GCATCAGCCAAAAAGAGTCACTG 60.611 47.826 0.00 0.00 33.58 3.66
138 139 3.558931 TCAGCCAAAAAGAGTCACTGA 57.441 42.857 0.00 0.00 0.00 3.41
139 140 3.884895 TCAGCCAAAAAGAGTCACTGAA 58.115 40.909 0.00 0.00 30.24 3.02
140 141 3.879295 TCAGCCAAAAAGAGTCACTGAAG 59.121 43.478 0.00 0.00 30.24 3.02
141 142 3.629398 CAGCCAAAAAGAGTCACTGAAGT 59.371 43.478 0.00 0.00 0.00 3.01
142 143 3.629398 AGCCAAAAAGAGTCACTGAAGTG 59.371 43.478 3.98 3.98 46.91 3.16
143 144 3.243201 GCCAAAAAGAGTCACTGAAGTGG 60.243 47.826 10.45 0.00 45.65 4.00
144 145 4.199310 CCAAAAAGAGTCACTGAAGTGGA 58.801 43.478 10.45 0.00 45.65 4.02
145 146 4.640201 CCAAAAAGAGTCACTGAAGTGGAA 59.360 41.667 10.45 0.00 45.65 3.53
146 147 5.125417 CCAAAAAGAGTCACTGAAGTGGAAA 59.875 40.000 10.45 0.00 45.65 3.13
147 148 6.350110 CCAAAAAGAGTCACTGAAGTGGAAAA 60.350 38.462 10.45 0.00 45.65 2.29
148 149 6.442513 AAAAGAGTCACTGAAGTGGAAAAG 57.557 37.500 10.45 0.00 45.65 2.27
149 150 4.762289 AGAGTCACTGAAGTGGAAAAGT 57.238 40.909 10.45 0.00 45.65 2.66
150 151 5.871396 AGAGTCACTGAAGTGGAAAAGTA 57.129 39.130 10.45 0.00 45.65 2.24
151 152 6.426646 AGAGTCACTGAAGTGGAAAAGTAT 57.573 37.500 10.45 0.00 45.65 2.12
152 153 7.540474 AGAGTCACTGAAGTGGAAAAGTATA 57.460 36.000 10.45 0.00 45.65 1.47
153 154 7.963532 AGAGTCACTGAAGTGGAAAAGTATAA 58.036 34.615 10.45 0.00 45.65 0.98
154 155 8.598041 AGAGTCACTGAAGTGGAAAAGTATAAT 58.402 33.333 10.45 0.00 45.65 1.28
155 156 9.871238 GAGTCACTGAAGTGGAAAAGTATAATA 57.129 33.333 10.45 0.00 45.65 0.98
183 184 9.201989 ACATGAGAAATATAGTACTCAAGGTCA 57.798 33.333 0.00 0.00 41.57 4.02
184 185 9.689976 CATGAGAAATATAGTACTCAAGGTCAG 57.310 37.037 0.00 0.00 41.57 3.51
185 186 8.239038 TGAGAAATATAGTACTCAAGGTCAGG 57.761 38.462 0.00 0.00 36.63 3.86
186 187 7.287927 TGAGAAATATAGTACTCAAGGTCAGGG 59.712 40.741 0.00 0.00 36.63 4.45
187 188 6.555360 AGAAATATAGTACTCAAGGTCAGGGG 59.445 42.308 0.00 0.00 0.00 4.79
188 189 1.861982 TAGTACTCAAGGTCAGGGGC 58.138 55.000 0.00 0.00 0.00 5.80
189 190 0.117340 AGTACTCAAGGTCAGGGGCT 59.883 55.000 0.00 0.00 0.00 5.19
190 191 0.984995 GTACTCAAGGTCAGGGGCTT 59.015 55.000 0.00 0.00 0.00 4.35
191 192 0.984230 TACTCAAGGTCAGGGGCTTG 59.016 55.000 0.00 0.00 0.00 4.01
192 193 1.001641 CTCAAGGTCAGGGGCTTGG 60.002 63.158 0.00 0.00 0.00 3.61
193 194 1.463214 TCAAGGTCAGGGGCTTGGA 60.463 57.895 0.00 0.00 0.00 3.53
194 195 0.846427 TCAAGGTCAGGGGCTTGGAT 60.846 55.000 0.00 0.00 0.00 3.41
195 196 0.918983 CAAGGTCAGGGGCTTGGATA 59.081 55.000 0.00 0.00 0.00 2.59
196 197 1.133976 CAAGGTCAGGGGCTTGGATAG 60.134 57.143 0.00 0.00 0.00 2.08
197 198 0.343372 AGGTCAGGGGCTTGGATAGA 59.657 55.000 0.00 0.00 0.00 1.98
198 199 1.213296 GGTCAGGGGCTTGGATAGAA 58.787 55.000 0.00 0.00 0.00 2.10
199 200 1.141858 GGTCAGGGGCTTGGATAGAAG 59.858 57.143 0.00 0.00 0.00 2.85
200 201 2.119495 GTCAGGGGCTTGGATAGAAGA 58.881 52.381 0.00 0.00 0.00 2.87
201 202 2.103941 GTCAGGGGCTTGGATAGAAGAG 59.896 54.545 0.00 0.00 0.00 2.85
202 203 2.023015 TCAGGGGCTTGGATAGAAGAGA 60.023 50.000 0.00 0.00 0.00 3.10
203 204 2.774234 CAGGGGCTTGGATAGAAGAGAA 59.226 50.000 0.00 0.00 0.00 2.87
204 205 3.044894 AGGGGCTTGGATAGAAGAGAAG 58.955 50.000 0.00 0.00 0.00 2.85
205 206 3.041946 GGGGCTTGGATAGAAGAGAAGA 58.958 50.000 0.00 0.00 0.00 2.87
206 207 3.456277 GGGGCTTGGATAGAAGAGAAGAA 59.544 47.826 0.00 0.00 0.00 2.52
207 208 4.444164 GGGGCTTGGATAGAAGAGAAGAAG 60.444 50.000 0.00 0.00 0.00 2.85
208 209 4.407296 GGGCTTGGATAGAAGAGAAGAAGA 59.593 45.833 0.00 0.00 0.00 2.87
209 210 5.453198 GGGCTTGGATAGAAGAGAAGAAGAG 60.453 48.000 0.00 0.00 0.00 2.85
210 211 5.362430 GGCTTGGATAGAAGAGAAGAAGAGA 59.638 44.000 0.00 0.00 0.00 3.10
211 212 6.461509 GGCTTGGATAGAAGAGAAGAAGAGAG 60.462 46.154 0.00 0.00 0.00 3.20
212 213 6.096846 GCTTGGATAGAAGAGAAGAAGAGAGT 59.903 42.308 0.00 0.00 0.00 3.24
213 214 7.639113 TTGGATAGAAGAGAAGAAGAGAGTC 57.361 40.000 0.00 0.00 0.00 3.36
214 215 5.820423 TGGATAGAAGAGAAGAAGAGAGTCG 59.180 44.000 0.00 0.00 0.00 4.18
215 216 6.053005 GGATAGAAGAGAAGAAGAGAGTCGA 58.947 44.000 0.00 0.00 0.00 4.20
216 217 6.202954 GGATAGAAGAGAAGAAGAGAGTCGAG 59.797 46.154 0.00 0.00 0.00 4.04
217 218 4.261801 AGAAGAGAAGAAGAGAGTCGAGG 58.738 47.826 0.00 0.00 0.00 4.63
218 219 2.999331 AGAGAAGAAGAGAGTCGAGGG 58.001 52.381 0.00 0.00 0.00 4.30
219 220 2.574369 AGAGAAGAAGAGAGTCGAGGGA 59.426 50.000 0.00 0.00 0.00 4.20
220 221 3.202151 AGAGAAGAAGAGAGTCGAGGGAT 59.798 47.826 0.00 0.00 0.00 3.85
221 222 3.551846 AGAAGAAGAGAGTCGAGGGATC 58.448 50.000 0.00 0.00 0.00 3.36
222 223 3.202151 AGAAGAAGAGAGTCGAGGGATCT 59.798 47.826 0.00 0.00 0.00 2.75
223 224 2.930950 AGAAGAGAGTCGAGGGATCTG 58.069 52.381 0.00 0.00 0.00 2.90
224 225 1.953686 GAAGAGAGTCGAGGGATCTGG 59.046 57.143 0.00 0.00 0.00 3.86
225 226 1.217916 AGAGAGTCGAGGGATCTGGA 58.782 55.000 0.00 0.00 0.00 3.86
226 227 1.780309 AGAGAGTCGAGGGATCTGGAT 59.220 52.381 0.00 0.00 30.63 3.41
227 228 1.885887 GAGAGTCGAGGGATCTGGATG 59.114 57.143 0.00 0.00 30.63 3.51
228 229 0.316841 GAGTCGAGGGATCTGGATGC 59.683 60.000 0.00 0.00 30.63 3.91
229 230 0.397675 AGTCGAGGGATCTGGATGCA 60.398 55.000 4.63 0.00 30.63 3.96
230 231 0.465705 GTCGAGGGATCTGGATGCAA 59.534 55.000 0.00 0.00 30.63 4.08
231 232 1.134401 GTCGAGGGATCTGGATGCAAA 60.134 52.381 0.00 0.00 30.63 3.68
232 233 1.139654 TCGAGGGATCTGGATGCAAAG 59.860 52.381 0.00 0.00 0.00 2.77
233 234 1.139654 CGAGGGATCTGGATGCAAAGA 59.860 52.381 0.00 0.00 0.00 2.52
234 235 2.420547 CGAGGGATCTGGATGCAAAGAA 60.421 50.000 0.00 0.00 0.00 2.52
235 236 3.624777 GAGGGATCTGGATGCAAAGAAA 58.375 45.455 0.00 0.00 0.00 2.52
236 237 4.019174 GAGGGATCTGGATGCAAAGAAAA 58.981 43.478 0.00 0.00 0.00 2.29
237 238 4.021916 AGGGATCTGGATGCAAAGAAAAG 58.978 43.478 0.00 0.00 0.00 2.27
238 239 3.766051 GGGATCTGGATGCAAAGAAAAGT 59.234 43.478 0.00 0.00 0.00 2.66
239 240 4.949856 GGGATCTGGATGCAAAGAAAAGTA 59.050 41.667 0.00 0.00 0.00 2.24
240 241 5.163612 GGGATCTGGATGCAAAGAAAAGTAC 60.164 44.000 0.00 0.00 0.00 2.73
241 242 5.163612 GGATCTGGATGCAAAGAAAAGTACC 60.164 44.000 0.00 0.00 0.00 3.34
242 243 4.079253 TCTGGATGCAAAGAAAAGTACCC 58.921 43.478 0.00 0.00 0.00 3.69
243 244 3.826157 CTGGATGCAAAGAAAAGTACCCA 59.174 43.478 0.00 0.00 0.00 4.51
244 245 3.826157 TGGATGCAAAGAAAAGTACCCAG 59.174 43.478 0.00 0.00 0.00 4.45
245 246 3.367395 GGATGCAAAGAAAAGTACCCAGC 60.367 47.826 0.00 0.00 0.00 4.85
246 247 1.606668 TGCAAAGAAAAGTACCCAGCG 59.393 47.619 0.00 0.00 0.00 5.18
247 248 1.666023 GCAAAGAAAAGTACCCAGCGC 60.666 52.381 0.00 0.00 0.00 5.92
248 249 1.068541 CAAAGAAAAGTACCCAGCGCC 60.069 52.381 2.29 0.00 0.00 6.53
249 250 0.109723 AAGAAAAGTACCCAGCGCCA 59.890 50.000 2.29 0.00 0.00 5.69
250 251 0.605589 AGAAAAGTACCCAGCGCCAC 60.606 55.000 2.29 0.00 0.00 5.01
251 252 1.583495 GAAAAGTACCCAGCGCCACC 61.583 60.000 2.29 0.00 0.00 4.61
252 253 3.894547 AAAGTACCCAGCGCCACCG 62.895 63.158 2.29 0.00 37.57 4.94
264 265 2.434884 CCACCGCTTCAGTCGCAT 60.435 61.111 0.00 0.00 0.00 4.73
265 266 2.743752 CCACCGCTTCAGTCGCATG 61.744 63.158 0.00 0.00 0.00 4.06
266 267 3.121030 ACCGCTTCAGTCGCATGC 61.121 61.111 7.91 7.91 0.00 4.06
267 268 4.214383 CCGCTTCAGTCGCATGCG 62.214 66.667 33.61 33.61 45.22 4.73
281 282 2.125552 TGCGAAGGTGCATCGAGG 60.126 61.111 12.18 0.00 42.76 4.63
282 283 2.892425 GCGAAGGTGCATCGAGGG 60.892 66.667 12.18 0.00 42.76 4.30
283 284 2.579201 CGAAGGTGCATCGAGGGT 59.421 61.111 1.97 0.00 42.76 4.34
284 285 1.811266 CGAAGGTGCATCGAGGGTG 60.811 63.158 1.97 0.00 42.76 4.61
285 286 1.450312 GAAGGTGCATCGAGGGTGG 60.450 63.158 0.00 0.00 0.00 4.61
286 287 1.899437 GAAGGTGCATCGAGGGTGGA 61.899 60.000 0.00 0.00 0.00 4.02
287 288 1.274703 AAGGTGCATCGAGGGTGGAT 61.275 55.000 0.00 0.00 0.00 3.41
288 289 1.227674 GGTGCATCGAGGGTGGATC 60.228 63.158 0.00 0.00 0.00 3.36
289 290 1.227674 GTGCATCGAGGGTGGATCC 60.228 63.158 4.20 4.20 0.00 3.36
302 303 3.371965 GGTGGATCCCTAGTAGTGAACA 58.628 50.000 9.90 0.00 0.00 3.18
303 304 3.132467 GGTGGATCCCTAGTAGTGAACAC 59.868 52.174 9.90 10.39 0.00 3.32
304 305 4.024670 GTGGATCCCTAGTAGTGAACACT 58.975 47.826 9.90 12.10 45.02 3.55
305 306 4.098196 GTGGATCCCTAGTAGTGAACACTC 59.902 50.000 9.90 3.99 42.54 3.51
306 307 4.017407 TGGATCCCTAGTAGTGAACACTCT 60.017 45.833 9.90 10.36 42.54 3.24
307 308 4.957327 GGATCCCTAGTAGTGAACACTCTT 59.043 45.833 10.81 3.97 42.54 2.85
308 309 5.068067 GGATCCCTAGTAGTGAACACTCTTC 59.932 48.000 10.81 4.18 42.54 2.87
309 310 4.994282 TCCCTAGTAGTGAACACTCTTCA 58.006 43.478 10.81 0.00 42.54 3.02
310 311 5.580998 TCCCTAGTAGTGAACACTCTTCAT 58.419 41.667 10.81 0.00 42.54 2.57
311 312 6.017192 TCCCTAGTAGTGAACACTCTTCATT 58.983 40.000 10.81 0.00 42.54 2.57
321 322 3.554934 ACACTCTTCATTTTCACTGCCA 58.445 40.909 0.00 0.00 0.00 4.92
345 346 3.596362 GCAAGGGCCCTCATTAACT 57.404 52.632 28.84 3.80 0.00 2.24
405 407 0.926720 TAGGACAGAGGAGGAGGGCT 60.927 60.000 0.00 0.00 0.00 5.19
406 408 1.306568 GGACAGAGGAGGAGGGCTT 60.307 63.158 0.00 0.00 0.00 4.35
407 409 0.032017 GGACAGAGGAGGAGGGCTTA 60.032 60.000 0.00 0.00 0.00 3.09
408 410 1.413808 GGACAGAGGAGGAGGGCTTAT 60.414 57.143 0.00 0.00 0.00 1.73
421 451 1.227674 GCTTATGCGGTGAGGGAGG 60.228 63.158 0.00 0.00 0.00 4.30
423 453 1.689233 TTATGCGGTGAGGGAGGCT 60.689 57.895 0.00 0.00 0.00 4.58
441 471 2.612721 GGCTGTCGATTTGGGCAATTTT 60.613 45.455 0.00 0.00 0.00 1.82
443 473 3.860378 GCTGTCGATTTGGGCAATTTTGA 60.860 43.478 0.00 0.00 0.00 2.69
449 479 1.422531 TTGGGCAATTTTGAGTGGCT 58.577 45.000 0.74 0.00 40.05 4.75
464 494 2.653115 GCTTTGGCTTGCCAGGTC 59.347 61.111 14.33 4.23 35.22 3.85
465 495 2.935740 GCTTTGGCTTGCCAGGTCC 61.936 63.158 14.33 1.83 35.22 4.46
466 496 2.597217 TTTGGCTTGCCAGGTCCG 60.597 61.111 14.33 0.00 0.00 4.79
467 497 3.126703 TTTGGCTTGCCAGGTCCGA 62.127 57.895 14.33 0.00 0.00 4.55
468 498 3.842925 TTGGCTTGCCAGGTCCGAC 62.843 63.158 14.33 0.00 0.00 4.79
469 499 4.329545 GGCTTGCCAGGTCCGACA 62.330 66.667 6.79 0.00 0.00 4.35
470 500 2.045926 GCTTGCCAGGTCCGACAT 60.046 61.111 0.00 0.00 0.00 3.06
471 501 1.220749 GCTTGCCAGGTCCGACATA 59.779 57.895 0.00 0.00 0.00 2.29
472 502 0.811616 GCTTGCCAGGTCCGACATAG 60.812 60.000 0.00 0.00 0.00 2.23
473 503 0.811616 CTTGCCAGGTCCGACATAGC 60.812 60.000 0.00 0.00 0.00 2.97
474 504 2.279517 GCCAGGTCCGACATAGCG 60.280 66.667 0.00 0.00 0.00 4.26
482 512 3.527186 CGACATAGCGGACGCATC 58.473 61.111 19.48 9.38 44.88 3.91
483 513 1.299089 CGACATAGCGGACGCATCA 60.299 57.895 19.48 3.85 44.88 3.07
484 514 0.664466 CGACATAGCGGACGCATCAT 60.664 55.000 19.48 6.10 44.88 2.45
485 515 1.063806 GACATAGCGGACGCATCATC 58.936 55.000 19.48 7.30 44.88 2.92
486 516 0.319900 ACATAGCGGACGCATCATCC 60.320 55.000 19.48 0.00 44.88 3.51
493 523 2.278857 ACGCATCATCCGTCTCGC 60.279 61.111 0.00 0.00 32.83 5.03
494 524 3.390017 CGCATCATCCGTCTCGCG 61.390 66.667 0.00 0.00 40.95 5.87
522 552 0.891904 GGGGTTTGCGAGGTGCTAAA 60.892 55.000 0.00 0.00 46.63 1.85
536 566 4.763073 GGTGCTAAACCGGATAAGTAAGT 58.237 43.478 9.46 0.00 39.81 2.24
547 577 5.470777 CCGGATAAGTAAGTTGTGTTTGGAA 59.529 40.000 0.00 0.00 0.00 3.53
559 598 8.181904 AGTTGTGTTTGGAAGACATGATTATT 57.818 30.769 0.00 0.00 34.39 1.40
582 621 3.210227 TCTTTTGTCCGAGCAATGTTCA 58.790 40.909 0.00 0.00 0.00 3.18
603 642 1.202475 GCCTTTTCGCCAGGACAAAAA 60.202 47.619 0.00 0.00 32.41 1.94
604 643 2.547855 GCCTTTTCGCCAGGACAAAAAT 60.548 45.455 0.00 0.00 32.41 1.82
606 645 3.243704 CCTTTTCGCCAGGACAAAAATGA 60.244 43.478 0.00 0.00 32.41 2.57
607 646 4.559153 CTTTTCGCCAGGACAAAAATGAT 58.441 39.130 0.00 0.00 0.00 2.45
608 647 3.574284 TTCGCCAGGACAAAAATGATG 57.426 42.857 0.00 0.00 0.00 3.07
638 677 2.742053 GGTTGAGTTGCGAATGCTCTTA 59.258 45.455 0.00 0.00 43.34 2.10
640 679 2.346803 TGAGTTGCGAATGCTCTTACC 58.653 47.619 0.00 0.00 43.34 2.85
645 684 4.083271 AGTTGCGAATGCTCTTACCTTTTC 60.083 41.667 0.00 0.00 43.34 2.29
646 685 2.415168 TGCGAATGCTCTTACCTTTTCG 59.585 45.455 0.00 0.00 43.34 3.46
647 686 3.039670 CGAATGCTCTTACCTTTTCGC 57.960 47.619 0.00 0.00 31.05 4.70
648 687 2.415168 CGAATGCTCTTACCTTTTCGCA 59.585 45.455 0.00 0.00 31.05 5.10
649 688 3.725010 CGAATGCTCTTACCTTTTCGCAC 60.725 47.826 0.00 0.00 31.05 5.34
732 2262 7.984422 TGTTTCCCATGTATGATGTGATATC 57.016 36.000 0.00 0.00 0.00 1.63
810 2343 1.541588 GCCCATCTTGTCAAGTTGTCC 59.458 52.381 18.15 8.25 0.00 4.02
884 2435 4.357918 AAAATACACTGACAGCTCCAGT 57.642 40.909 11.43 11.43 44.92 4.00
1291 2865 1.371183 CTGCCGTTCCTCTTCACCA 59.629 57.895 0.00 0.00 0.00 4.17
1646 3246 2.987125 GGTGTACATCCCCGTGCT 59.013 61.111 0.00 0.00 0.00 4.40
1647 3247 1.298667 GGTGTACATCCCCGTGCTT 59.701 57.895 0.00 0.00 0.00 3.91
1776 3379 1.222936 CGCCTTCTTCCTGCTCCAT 59.777 57.895 0.00 0.00 0.00 3.41
1885 3491 4.612412 TGGTGGTGTTCGTCGCCC 62.612 66.667 9.56 3.14 45.41 6.13
1915 3521 4.083862 GGCTCTTCTTCCCGCCGT 62.084 66.667 0.00 0.00 32.22 5.68
1922 3528 3.726517 CTTCCCGCCGTTGTGCAG 61.727 66.667 0.00 0.00 0.00 4.41
1949 3555 2.511145 CGAGGAGAAGCTGCTGGC 60.511 66.667 0.00 0.00 42.19 4.85
2040 3689 6.471976 ACCGACTAACGAAGGAAAATAAAC 57.528 37.500 0.00 0.00 45.77 2.01
2041 3690 5.990996 ACCGACTAACGAAGGAAAATAAACA 59.009 36.000 0.00 0.00 45.77 2.83
2042 3691 6.073602 ACCGACTAACGAAGGAAAATAAACAC 60.074 38.462 0.00 0.00 45.77 3.32
2043 3692 6.146673 CCGACTAACGAAGGAAAATAAACACT 59.853 38.462 0.00 0.00 45.77 3.55
2044 3693 7.225397 CGACTAACGAAGGAAAATAAACACTC 58.775 38.462 0.00 0.00 45.77 3.51
2045 3694 7.115947 CGACTAACGAAGGAAAATAAACACTCT 59.884 37.037 0.00 0.00 45.77 3.24
2046 3695 8.307921 ACTAACGAAGGAAAATAAACACTCTC 57.692 34.615 0.00 0.00 0.00 3.20
2048 3697 7.562454 AACGAAGGAAAATAAACACTCTCAA 57.438 32.000 0.00 0.00 0.00 3.02
2049 3698 7.562454 ACGAAGGAAAATAAACACTCTCAAA 57.438 32.000 0.00 0.00 0.00 2.69
2065 3756 8.495949 ACACTCTCAAAAGTTTATCATGTTACG 58.504 33.333 0.00 0.00 0.00 3.18
2081 3794 5.133707 TGTTACGTCTCAAAAGTTTCACG 57.866 39.130 0.00 7.44 0.00 4.35
2150 3870 0.238289 GAACTGTGCACCATTCCACG 59.762 55.000 15.69 0.00 34.77 4.94
2312 4074 2.271800 CCCTGCTATTCACGAAGACAC 58.728 52.381 0.00 0.00 0.00 3.67
2404 4166 2.505407 CTCACATCCCCACCAGTGATAA 59.495 50.000 0.00 0.00 39.92 1.75
2442 4204 3.365472 AGGGTGCATGAGGGTAAATTTC 58.635 45.455 0.00 0.00 0.00 2.17
2443 4205 2.099098 GGGTGCATGAGGGTAAATTTCG 59.901 50.000 0.00 0.00 0.00 3.46
2444 4206 2.752903 GGTGCATGAGGGTAAATTTCGT 59.247 45.455 0.00 0.00 0.00 3.85
2445 4207 3.427503 GGTGCATGAGGGTAAATTTCGTG 60.428 47.826 0.00 0.00 0.00 4.35
2451 4213 4.250464 TGAGGGTAAATTTCGTGCTACTG 58.750 43.478 0.00 0.00 0.00 2.74
2476 4238 3.895041 CCCACTTTTGGTTGATTGGTAGT 59.105 43.478 0.00 0.00 42.10 2.73
2492 4276 2.766828 GGTAGTCTGCACAGATACCCTT 59.233 50.000 18.70 2.63 39.97 3.95
2503 4287 3.137176 ACAGATACCCTTGTAGCATGCAT 59.863 43.478 21.98 7.68 35.80 3.96
2504 4288 3.501062 CAGATACCCTTGTAGCATGCATG 59.499 47.826 22.70 22.70 35.80 4.06
2505 4289 3.392285 AGATACCCTTGTAGCATGCATGA 59.608 43.478 30.64 7.50 35.80 3.07
2506 4290 2.512692 ACCCTTGTAGCATGCATGAA 57.487 45.000 30.64 14.25 0.00 2.57
2507 4291 3.022557 ACCCTTGTAGCATGCATGAAT 57.977 42.857 30.64 19.08 0.00 2.57
2563 4353 1.080435 CATGCACGAGTGATGCGAGT 61.080 55.000 7.50 0.00 46.49 4.18
2569 4359 0.248255 CGAGTGATGCGAGTGACGAT 60.248 55.000 0.00 0.00 45.77 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.475727 GGAACAAGTTTAGGACAAGCTTTTTC 59.524 38.462 0.00 0.00 0.00 2.29
5 6 4.793201 AGGAACAAGTTTAGGACAAGCTT 58.207 39.130 0.00 0.00 0.00 3.74
6 7 4.141482 TGAGGAACAAGTTTAGGACAAGCT 60.141 41.667 0.00 0.00 0.00 3.74
7 8 4.134563 TGAGGAACAAGTTTAGGACAAGC 58.865 43.478 0.00 0.00 0.00 4.01
8 9 6.693315 TTTGAGGAACAAGTTTAGGACAAG 57.307 37.500 0.00 0.00 39.77 3.16
9 10 6.040391 CCATTTGAGGAACAAGTTTAGGACAA 59.960 38.462 0.00 0.00 39.77 3.18
10 11 5.534654 CCATTTGAGGAACAAGTTTAGGACA 59.465 40.000 0.00 0.00 39.77 4.02
11 12 5.768164 TCCATTTGAGGAACAAGTTTAGGAC 59.232 40.000 0.00 0.00 39.77 3.85
12 13 5.947663 TCCATTTGAGGAACAAGTTTAGGA 58.052 37.500 0.00 0.00 39.77 2.94
13 14 6.209391 ACATCCATTTGAGGAACAAGTTTAGG 59.791 38.462 0.00 0.00 41.92 2.69
14 15 7.219484 ACATCCATTTGAGGAACAAGTTTAG 57.781 36.000 0.00 0.00 41.92 1.85
15 16 7.175990 GGTACATCCATTTGAGGAACAAGTTTA 59.824 37.037 0.00 0.00 41.92 2.01
16 17 6.015434 GGTACATCCATTTGAGGAACAAGTTT 60.015 38.462 0.00 0.00 41.92 2.66
17 18 5.476945 GGTACATCCATTTGAGGAACAAGTT 59.523 40.000 0.00 0.00 41.92 2.66
18 19 5.010282 GGTACATCCATTTGAGGAACAAGT 58.990 41.667 0.00 0.00 41.92 3.16
19 20 5.256474 AGGTACATCCATTTGAGGAACAAG 58.744 41.667 0.00 0.00 41.92 3.16
20 21 5.255397 AGGTACATCCATTTGAGGAACAA 57.745 39.130 0.00 0.00 41.92 2.83
21 22 4.927267 AGGTACATCCATTTGAGGAACA 57.073 40.909 0.00 0.00 41.92 3.18
22 23 4.816925 GCTAGGTACATCCATTTGAGGAAC 59.183 45.833 0.00 0.00 41.92 3.62
23 24 4.473196 TGCTAGGTACATCCATTTGAGGAA 59.527 41.667 0.00 0.00 41.92 3.36
24 25 4.037222 TGCTAGGTACATCCATTTGAGGA 58.963 43.478 0.00 0.00 43.01 3.71
25 26 4.130118 GTGCTAGGTACATCCATTTGAGG 58.870 47.826 0.00 0.00 39.02 3.86
26 27 5.028549 AGTGCTAGGTACATCCATTTGAG 57.971 43.478 0.00 0.00 39.02 3.02
27 28 6.156256 AGTTAGTGCTAGGTACATCCATTTGA 59.844 38.462 0.00 0.00 39.02 2.69
28 29 6.349300 AGTTAGTGCTAGGTACATCCATTTG 58.651 40.000 0.00 0.00 39.02 2.32
29 30 6.561519 AGTTAGTGCTAGGTACATCCATTT 57.438 37.500 0.00 0.00 39.02 2.32
30 31 6.156256 TCAAGTTAGTGCTAGGTACATCCATT 59.844 38.462 0.00 0.00 39.02 3.16
31 32 5.661312 TCAAGTTAGTGCTAGGTACATCCAT 59.339 40.000 0.00 0.00 39.02 3.41
32 33 5.020795 TCAAGTTAGTGCTAGGTACATCCA 58.979 41.667 0.00 0.00 39.02 3.41
33 34 5.593679 TCAAGTTAGTGCTAGGTACATCC 57.406 43.478 0.00 0.00 0.00 3.51
34 35 5.463724 GCATCAAGTTAGTGCTAGGTACATC 59.536 44.000 0.00 0.00 36.02 3.06
35 36 5.129485 AGCATCAAGTTAGTGCTAGGTACAT 59.871 40.000 11.30 0.00 46.54 2.29
36 37 4.466370 AGCATCAAGTTAGTGCTAGGTACA 59.534 41.667 11.30 0.00 46.54 2.90
37 38 5.012328 AGCATCAAGTTAGTGCTAGGTAC 57.988 43.478 11.30 0.00 46.54 3.34
42 43 7.582667 TGTATCTAGCATCAAGTTAGTGCTA 57.417 36.000 16.22 16.22 46.54 3.49
44 45 7.867909 TGTATGTATCTAGCATCAAGTTAGTGC 59.132 37.037 4.02 4.02 39.10 4.40
45 46 9.920133 ATGTATGTATCTAGCATCAAGTTAGTG 57.080 33.333 0.00 0.00 33.25 2.74
49 50 9.836864 TCAAATGTATGTATCTAGCATCAAGTT 57.163 29.630 0.00 0.00 0.00 2.66
50 51 9.486497 CTCAAATGTATGTATCTAGCATCAAGT 57.514 33.333 0.00 0.00 0.00 3.16
51 52 8.933807 CCTCAAATGTATGTATCTAGCATCAAG 58.066 37.037 0.00 0.00 0.00 3.02
52 53 7.879677 CCCTCAAATGTATGTATCTAGCATCAA 59.120 37.037 0.00 0.00 0.00 2.57
53 54 7.235399 TCCCTCAAATGTATGTATCTAGCATCA 59.765 37.037 0.00 0.00 0.00 3.07
54 55 7.547370 GTCCCTCAAATGTATGTATCTAGCATC 59.453 40.741 0.00 0.00 0.00 3.91
55 56 7.016563 TGTCCCTCAAATGTATGTATCTAGCAT 59.983 37.037 0.00 0.00 0.00 3.79
56 57 6.326323 TGTCCCTCAAATGTATGTATCTAGCA 59.674 38.462 0.00 0.00 0.00 3.49
57 58 6.759272 TGTCCCTCAAATGTATGTATCTAGC 58.241 40.000 0.00 0.00 0.00 3.42
58 59 8.424918 ACTTGTCCCTCAAATGTATGTATCTAG 58.575 37.037 0.00 0.00 35.48 2.43
59 60 8.319057 ACTTGTCCCTCAAATGTATGTATCTA 57.681 34.615 0.00 0.00 35.48 1.98
60 61 7.200434 ACTTGTCCCTCAAATGTATGTATCT 57.800 36.000 0.00 0.00 35.48 1.98
61 62 7.865706 AACTTGTCCCTCAAATGTATGTATC 57.134 36.000 0.00 0.00 35.48 2.24
62 63 8.650143 AAAACTTGTCCCTCAAATGTATGTAT 57.350 30.769 0.00 0.00 35.48 2.29
63 64 8.472007 AAAAACTTGTCCCTCAAATGTATGTA 57.528 30.769 0.00 0.00 35.48 2.29
64 65 6.976934 AAAACTTGTCCCTCAAATGTATGT 57.023 33.333 0.00 0.00 35.48 2.29
86 87 1.001181 CGTACTCCCTCCGTCCAAAAA 59.999 52.381 0.00 0.00 0.00 1.94
87 88 0.604578 CGTACTCCCTCCGTCCAAAA 59.395 55.000 0.00 0.00 0.00 2.44
88 89 0.540365 ACGTACTCCCTCCGTCCAAA 60.540 55.000 0.00 0.00 0.00 3.28
89 90 1.075482 ACGTACTCCCTCCGTCCAA 59.925 57.895 0.00 0.00 0.00 3.53
90 91 1.676635 CACGTACTCCCTCCGTCCA 60.677 63.158 0.00 0.00 31.46 4.02
91 92 0.962356 TTCACGTACTCCCTCCGTCC 60.962 60.000 0.00 0.00 31.46 4.79
92 93 0.883833 TTTCACGTACTCCCTCCGTC 59.116 55.000 0.00 0.00 31.46 4.79
93 94 0.600057 GTTTCACGTACTCCCTCCGT 59.400 55.000 0.00 0.00 34.71 4.69
94 95 0.599558 TGTTTCACGTACTCCCTCCG 59.400 55.000 0.00 0.00 0.00 4.63
95 96 2.618053 CATGTTTCACGTACTCCCTCC 58.382 52.381 0.00 0.00 0.00 4.30
96 97 2.000447 GCATGTTTCACGTACTCCCTC 59.000 52.381 0.00 0.00 0.00 4.30
97 98 1.346395 TGCATGTTTCACGTACTCCCT 59.654 47.619 0.00 0.00 0.00 4.20
98 99 1.803334 TGCATGTTTCACGTACTCCC 58.197 50.000 0.00 0.00 0.00 4.30
99 100 3.000041 TGATGCATGTTTCACGTACTCC 59.000 45.455 2.46 0.00 0.00 3.85
100 101 3.484229 GCTGATGCATGTTTCACGTACTC 60.484 47.826 2.46 0.00 39.41 2.59
101 102 2.416547 GCTGATGCATGTTTCACGTACT 59.583 45.455 2.46 0.00 39.41 2.73
102 103 2.476185 GGCTGATGCATGTTTCACGTAC 60.476 50.000 2.46 0.00 41.91 3.67
103 104 1.737236 GGCTGATGCATGTTTCACGTA 59.263 47.619 2.46 0.00 41.91 3.57
104 105 0.523072 GGCTGATGCATGTTTCACGT 59.477 50.000 2.46 0.00 41.91 4.49
105 106 0.522626 TGGCTGATGCATGTTTCACG 59.477 50.000 2.46 0.00 41.91 4.35
106 107 2.728690 TTGGCTGATGCATGTTTCAC 57.271 45.000 2.46 0.00 41.91 3.18
107 108 3.747854 TTTTGGCTGATGCATGTTTCA 57.252 38.095 2.46 0.00 41.91 2.69
108 109 4.309099 TCTTTTTGGCTGATGCATGTTTC 58.691 39.130 2.46 0.00 41.91 2.78
109 110 4.202284 ACTCTTTTTGGCTGATGCATGTTT 60.202 37.500 2.46 0.00 41.91 2.83
110 111 3.322828 ACTCTTTTTGGCTGATGCATGTT 59.677 39.130 2.46 0.00 41.91 2.71
111 112 2.895404 ACTCTTTTTGGCTGATGCATGT 59.105 40.909 2.46 0.00 41.91 3.21
112 113 3.057104 TGACTCTTTTTGGCTGATGCATG 60.057 43.478 2.46 0.00 41.91 4.06
113 114 3.057033 GTGACTCTTTTTGGCTGATGCAT 60.057 43.478 0.00 0.00 41.91 3.96
114 115 2.294233 GTGACTCTTTTTGGCTGATGCA 59.706 45.455 0.00 0.00 41.91 3.96
115 116 2.555757 AGTGACTCTTTTTGGCTGATGC 59.444 45.455 0.00 0.00 38.76 3.91
116 117 3.817084 TCAGTGACTCTTTTTGGCTGATG 59.183 43.478 0.00 0.00 0.00 3.07
117 118 4.090761 TCAGTGACTCTTTTTGGCTGAT 57.909 40.909 0.00 0.00 0.00 2.90
118 119 3.558931 TCAGTGACTCTTTTTGGCTGA 57.441 42.857 0.00 0.00 0.00 4.26
119 120 3.629398 ACTTCAGTGACTCTTTTTGGCTG 59.371 43.478 0.00 0.00 0.00 4.85
120 121 3.891049 ACTTCAGTGACTCTTTTTGGCT 58.109 40.909 0.00 0.00 0.00 4.75
157 158 9.201989 TGACCTTGAGTACTATATTTCTCATGT 57.798 33.333 0.00 2.62 36.91 3.21
158 159 9.689976 CTGACCTTGAGTACTATATTTCTCATG 57.310 37.037 0.00 3.87 36.91 3.07
159 160 8.865090 CCTGACCTTGAGTACTATATTTCTCAT 58.135 37.037 0.00 0.00 36.91 2.90
160 161 7.287927 CCCTGACCTTGAGTACTATATTTCTCA 59.712 40.741 0.00 0.00 35.54 3.27
161 162 7.256012 CCCCTGACCTTGAGTACTATATTTCTC 60.256 44.444 0.00 0.00 0.00 2.87
162 163 6.555360 CCCCTGACCTTGAGTACTATATTTCT 59.445 42.308 0.00 0.00 0.00 2.52
163 164 6.741801 GCCCCTGACCTTGAGTACTATATTTC 60.742 46.154 0.00 0.00 0.00 2.17
164 165 5.071923 GCCCCTGACCTTGAGTACTATATTT 59.928 44.000 0.00 0.00 0.00 1.40
165 166 4.593634 GCCCCTGACCTTGAGTACTATATT 59.406 45.833 0.00 0.00 0.00 1.28
166 167 4.140663 AGCCCCTGACCTTGAGTACTATAT 60.141 45.833 0.00 0.00 0.00 0.86
167 168 3.206866 AGCCCCTGACCTTGAGTACTATA 59.793 47.826 0.00 0.00 0.00 1.31
168 169 2.022918 AGCCCCTGACCTTGAGTACTAT 60.023 50.000 0.00 0.00 0.00 2.12
169 170 1.361543 AGCCCCTGACCTTGAGTACTA 59.638 52.381 0.00 0.00 0.00 1.82
170 171 0.117340 AGCCCCTGACCTTGAGTACT 59.883 55.000 0.00 0.00 0.00 2.73
171 172 0.984995 AAGCCCCTGACCTTGAGTAC 59.015 55.000 0.00 0.00 0.00 2.73
172 173 0.984230 CAAGCCCCTGACCTTGAGTA 59.016 55.000 0.00 0.00 40.59 2.59
173 174 1.763770 CAAGCCCCTGACCTTGAGT 59.236 57.895 0.00 0.00 40.59 3.41
174 175 1.001641 CCAAGCCCCTGACCTTGAG 60.002 63.158 2.22 0.00 40.59 3.02
175 176 0.846427 ATCCAAGCCCCTGACCTTGA 60.846 55.000 2.22 0.00 40.59 3.02
176 177 0.918983 TATCCAAGCCCCTGACCTTG 59.081 55.000 0.00 0.00 38.48 3.61
177 178 1.216990 CTATCCAAGCCCCTGACCTT 58.783 55.000 0.00 0.00 0.00 3.50
178 179 0.343372 TCTATCCAAGCCCCTGACCT 59.657 55.000 0.00 0.00 0.00 3.85
179 180 1.141858 CTTCTATCCAAGCCCCTGACC 59.858 57.143 0.00 0.00 0.00 4.02
180 181 2.103941 CTCTTCTATCCAAGCCCCTGAC 59.896 54.545 0.00 0.00 0.00 3.51
181 182 2.023015 TCTCTTCTATCCAAGCCCCTGA 60.023 50.000 0.00 0.00 0.00 3.86
182 183 2.402564 TCTCTTCTATCCAAGCCCCTG 58.597 52.381 0.00 0.00 0.00 4.45
183 184 2.877154 TCTCTTCTATCCAAGCCCCT 57.123 50.000 0.00 0.00 0.00 4.79
184 185 3.041946 TCTTCTCTTCTATCCAAGCCCC 58.958 50.000 0.00 0.00 0.00 5.80
185 186 4.407296 TCTTCTTCTCTTCTATCCAAGCCC 59.593 45.833 0.00 0.00 0.00 5.19
186 187 5.362430 TCTCTTCTTCTCTTCTATCCAAGCC 59.638 44.000 0.00 0.00 0.00 4.35
187 188 6.096846 ACTCTCTTCTTCTCTTCTATCCAAGC 59.903 42.308 0.00 0.00 0.00 4.01
188 189 7.467267 CGACTCTCTTCTTCTCTTCTATCCAAG 60.467 44.444 0.00 0.00 0.00 3.61
189 190 6.317642 CGACTCTCTTCTTCTCTTCTATCCAA 59.682 42.308 0.00 0.00 0.00 3.53
190 191 5.820423 CGACTCTCTTCTTCTCTTCTATCCA 59.180 44.000 0.00 0.00 0.00 3.41
191 192 6.053005 TCGACTCTCTTCTTCTCTTCTATCC 58.947 44.000 0.00 0.00 0.00 2.59
192 193 6.202954 CCTCGACTCTCTTCTTCTCTTCTATC 59.797 46.154 0.00 0.00 0.00 2.08
193 194 6.055588 CCTCGACTCTCTTCTTCTCTTCTAT 58.944 44.000 0.00 0.00 0.00 1.98
194 195 5.424757 CCTCGACTCTCTTCTTCTCTTCTA 58.575 45.833 0.00 0.00 0.00 2.10
195 196 4.261801 CCTCGACTCTCTTCTTCTCTTCT 58.738 47.826 0.00 0.00 0.00 2.85
196 197 3.377172 CCCTCGACTCTCTTCTTCTCTTC 59.623 52.174 0.00 0.00 0.00 2.87
197 198 3.009695 TCCCTCGACTCTCTTCTTCTCTT 59.990 47.826 0.00 0.00 0.00 2.85
198 199 2.574369 TCCCTCGACTCTCTTCTTCTCT 59.426 50.000 0.00 0.00 0.00 3.10
199 200 2.993937 TCCCTCGACTCTCTTCTTCTC 58.006 52.381 0.00 0.00 0.00 2.87
200 201 3.202151 AGATCCCTCGACTCTCTTCTTCT 59.798 47.826 0.00 0.00 0.00 2.85
201 202 3.315191 CAGATCCCTCGACTCTCTTCTTC 59.685 52.174 0.00 0.00 0.00 2.87
202 203 3.287222 CAGATCCCTCGACTCTCTTCTT 58.713 50.000 0.00 0.00 0.00 2.52
203 204 2.422803 CCAGATCCCTCGACTCTCTTCT 60.423 54.545 0.00 0.00 0.00 2.85
204 205 1.953686 CCAGATCCCTCGACTCTCTTC 59.046 57.143 0.00 0.00 0.00 2.87
205 206 1.566703 TCCAGATCCCTCGACTCTCTT 59.433 52.381 0.00 0.00 0.00 2.85
206 207 1.217916 TCCAGATCCCTCGACTCTCT 58.782 55.000 0.00 0.00 0.00 3.10
207 208 1.885887 CATCCAGATCCCTCGACTCTC 59.114 57.143 0.00 0.00 0.00 3.20
208 209 1.993956 CATCCAGATCCCTCGACTCT 58.006 55.000 0.00 0.00 0.00 3.24
209 210 0.316841 GCATCCAGATCCCTCGACTC 59.683 60.000 0.00 0.00 0.00 3.36
210 211 0.397675 TGCATCCAGATCCCTCGACT 60.398 55.000 0.00 0.00 0.00 4.18
211 212 0.465705 TTGCATCCAGATCCCTCGAC 59.534 55.000 0.00 0.00 0.00 4.20
212 213 1.139654 CTTTGCATCCAGATCCCTCGA 59.860 52.381 0.00 0.00 0.00 4.04
213 214 1.139654 TCTTTGCATCCAGATCCCTCG 59.860 52.381 0.00 0.00 0.00 4.63
214 215 3.287867 TTCTTTGCATCCAGATCCCTC 57.712 47.619 0.00 0.00 0.00 4.30
215 216 3.744940 TTTCTTTGCATCCAGATCCCT 57.255 42.857 0.00 0.00 0.00 4.20
216 217 3.766051 ACTTTTCTTTGCATCCAGATCCC 59.234 43.478 0.00 0.00 0.00 3.85
217 218 5.163612 GGTACTTTTCTTTGCATCCAGATCC 60.164 44.000 0.00 0.00 0.00 3.36
218 219 5.163612 GGGTACTTTTCTTTGCATCCAGATC 60.164 44.000 0.00 0.00 0.00 2.75
219 220 4.706962 GGGTACTTTTCTTTGCATCCAGAT 59.293 41.667 0.00 0.00 0.00 2.90
220 221 4.079253 GGGTACTTTTCTTTGCATCCAGA 58.921 43.478 0.00 0.00 0.00 3.86
221 222 3.826157 TGGGTACTTTTCTTTGCATCCAG 59.174 43.478 0.00 0.00 0.00 3.86
222 223 3.826157 CTGGGTACTTTTCTTTGCATCCA 59.174 43.478 0.00 0.00 0.00 3.41
223 224 3.367395 GCTGGGTACTTTTCTTTGCATCC 60.367 47.826 0.00 0.00 0.00 3.51
224 225 3.670627 CGCTGGGTACTTTTCTTTGCATC 60.671 47.826 0.00 0.00 0.00 3.91
225 226 2.228822 CGCTGGGTACTTTTCTTTGCAT 59.771 45.455 0.00 0.00 0.00 3.96
226 227 1.606668 CGCTGGGTACTTTTCTTTGCA 59.393 47.619 0.00 0.00 0.00 4.08
227 228 1.666023 GCGCTGGGTACTTTTCTTTGC 60.666 52.381 0.00 0.00 0.00 3.68
228 229 1.068541 GGCGCTGGGTACTTTTCTTTG 60.069 52.381 7.64 0.00 0.00 2.77
229 230 1.244816 GGCGCTGGGTACTTTTCTTT 58.755 50.000 7.64 0.00 0.00 2.52
230 231 0.109723 TGGCGCTGGGTACTTTTCTT 59.890 50.000 7.64 0.00 0.00 2.52
231 232 0.605589 GTGGCGCTGGGTACTTTTCT 60.606 55.000 7.64 0.00 0.00 2.52
232 233 1.583495 GGTGGCGCTGGGTACTTTTC 61.583 60.000 7.64 0.00 0.00 2.29
233 234 1.602605 GGTGGCGCTGGGTACTTTT 60.603 57.895 7.64 0.00 0.00 2.27
234 235 2.033602 GGTGGCGCTGGGTACTTT 59.966 61.111 7.64 0.00 0.00 2.66
235 236 4.388499 CGGTGGCGCTGGGTACTT 62.388 66.667 7.64 0.00 0.00 2.24
247 248 2.434884 ATGCGACTGAAGCGGTGG 60.435 61.111 0.00 0.00 37.44 4.61
248 249 2.780643 CATGCGACTGAAGCGGTG 59.219 61.111 0.00 0.00 37.44 4.94
249 250 3.121030 GCATGCGACTGAAGCGGT 61.121 61.111 0.00 0.00 37.44 5.68
250 251 4.214383 CGCATGCGACTGAAGCGG 62.214 66.667 35.82 0.04 44.20 5.52
265 266 2.892425 CCCTCGATGCACCTTCGC 60.892 66.667 3.32 0.00 36.56 4.70
266 267 1.811266 CACCCTCGATGCACCTTCG 60.811 63.158 1.75 1.75 37.94 3.79
267 268 1.450312 CCACCCTCGATGCACCTTC 60.450 63.158 0.00 0.00 0.00 3.46
268 269 1.274703 ATCCACCCTCGATGCACCTT 61.275 55.000 0.00 0.00 0.00 3.50
269 270 1.690219 GATCCACCCTCGATGCACCT 61.690 60.000 0.00 0.00 0.00 4.00
270 271 1.227674 GATCCACCCTCGATGCACC 60.228 63.158 0.00 0.00 0.00 5.01
271 272 1.227674 GGATCCACCCTCGATGCAC 60.228 63.158 6.95 0.00 0.00 4.57
272 273 3.230284 GGATCCACCCTCGATGCA 58.770 61.111 6.95 0.00 0.00 3.96
281 282 3.132467 GTGTTCACTACTAGGGATCCACC 59.868 52.174 15.23 0.00 28.98 4.61
282 283 4.024670 AGTGTTCACTACTAGGGATCCAC 58.975 47.826 15.23 2.86 32.93 4.02
283 284 4.017407 AGAGTGTTCACTACTAGGGATCCA 60.017 45.833 15.23 0.00 0.00 3.41
284 285 4.538738 AGAGTGTTCACTACTAGGGATCC 58.461 47.826 1.92 1.92 0.00 3.36
285 286 5.652891 TGAAGAGTGTTCACTACTAGGGATC 59.347 44.000 5.40 0.00 0.00 3.36
286 287 5.580998 TGAAGAGTGTTCACTACTAGGGAT 58.419 41.667 5.40 0.00 0.00 3.85
287 288 4.994282 TGAAGAGTGTTCACTACTAGGGA 58.006 43.478 5.40 0.00 0.00 4.20
288 289 5.923733 ATGAAGAGTGTTCACTACTAGGG 57.076 43.478 4.61 0.00 0.00 3.53
289 290 7.872993 TGAAAATGAAGAGTGTTCACTACTAGG 59.127 37.037 4.61 0.00 0.00 3.02
290 291 8.704234 GTGAAAATGAAGAGTGTTCACTACTAG 58.296 37.037 4.61 0.00 42.96 2.57
291 292 8.589335 GTGAAAATGAAGAGTGTTCACTACTA 57.411 34.615 4.61 0.00 42.96 1.82
292 293 7.484035 GTGAAAATGAAGAGTGTTCACTACT 57.516 36.000 4.61 2.96 42.96 2.57
296 297 4.972440 GCAGTGAAAATGAAGAGTGTTCAC 59.028 41.667 4.61 6.71 45.37 3.18
297 298 4.036734 GGCAGTGAAAATGAAGAGTGTTCA 59.963 41.667 5.03 5.03 30.28 3.18
298 299 4.036734 TGGCAGTGAAAATGAAGAGTGTTC 59.963 41.667 0.00 0.00 30.28 3.18
299 300 3.953612 TGGCAGTGAAAATGAAGAGTGTT 59.046 39.130 0.00 0.00 30.28 3.32
300 301 3.316308 GTGGCAGTGAAAATGAAGAGTGT 59.684 43.478 0.00 0.00 30.28 3.55
301 302 3.316029 TGTGGCAGTGAAAATGAAGAGTG 59.684 43.478 0.00 0.00 30.28 3.51
302 303 3.554934 TGTGGCAGTGAAAATGAAGAGT 58.445 40.909 0.00 0.00 30.28 3.24
303 304 4.572985 TTGTGGCAGTGAAAATGAAGAG 57.427 40.909 0.00 0.00 30.28 2.85
304 305 4.262121 CCATTGTGGCAGTGAAAATGAAGA 60.262 41.667 0.00 0.00 30.28 2.87
305 306 3.991773 CCATTGTGGCAGTGAAAATGAAG 59.008 43.478 0.00 0.00 30.28 3.02
306 307 3.992643 CCATTGTGGCAGTGAAAATGAA 58.007 40.909 0.00 0.00 30.28 2.57
307 308 3.663995 CCATTGTGGCAGTGAAAATGA 57.336 42.857 0.00 0.00 30.28 2.57
329 330 1.064389 GCAGAGTTAATGAGGGCCCTT 60.064 52.381 29.39 13.64 0.00 3.95
330 331 0.548510 GCAGAGTTAATGAGGGCCCT 59.451 55.000 29.18 29.18 0.00 5.19
333 334 1.745653 GGTTGCAGAGTTAATGAGGGC 59.254 52.381 0.00 0.00 0.00 5.19
337 338 2.375174 ACCCTGGTTGCAGAGTTAATGA 59.625 45.455 0.00 0.00 0.00 2.57
338 339 2.749621 GACCCTGGTTGCAGAGTTAATG 59.250 50.000 0.00 0.00 0.00 1.90
345 346 1.379916 CATGGACCCTGGTTGCAGA 59.620 57.895 0.00 0.00 0.00 4.26
373 375 1.359475 GTCCTAGCCATCGACGTCC 59.641 63.158 10.58 0.00 0.00 4.79
405 407 1.689233 AGCCTCCCTCACCGCATAA 60.689 57.895 0.00 0.00 0.00 1.90
406 408 2.041922 AGCCTCCCTCACCGCATA 60.042 61.111 0.00 0.00 0.00 3.14
407 409 3.790437 CAGCCTCCCTCACCGCAT 61.790 66.667 0.00 0.00 0.00 4.73
421 451 2.368655 AAATTGCCCAAATCGACAGC 57.631 45.000 0.00 0.00 0.00 4.40
423 453 3.320541 ACTCAAAATTGCCCAAATCGACA 59.679 39.130 0.00 0.00 0.00 4.35
441 471 3.447040 GCAAGCCAAAGCCACTCA 58.553 55.556 0.00 0.00 41.25 3.41
449 479 2.597217 CGGACCTGGCAAGCCAAA 60.597 61.111 15.55 0.00 46.63 3.28
465 495 0.664466 ATGATGCGTCCGCTATGTCG 60.664 55.000 13.31 0.00 42.51 4.35
466 496 1.063806 GATGATGCGTCCGCTATGTC 58.936 55.000 13.31 6.61 42.51 3.06
467 497 0.319900 GGATGATGCGTCCGCTATGT 60.320 55.000 13.31 0.00 42.51 2.29
468 498 2.449548 GGATGATGCGTCCGCTATG 58.550 57.895 13.31 0.00 42.51 2.23
469 499 4.996976 GGATGATGCGTCCGCTAT 57.003 55.556 13.31 4.92 42.51 2.97
477 507 3.390017 CGCGAGACGGATGATGCG 61.390 66.667 0.00 4.40 39.57 4.73
478 508 0.387367 ATACGCGAGACGGATGATGC 60.387 55.000 15.93 0.00 46.12 3.91
479 509 3.775065 ATACGCGAGACGGATGATG 57.225 52.632 15.93 0.00 46.12 3.07
487 517 1.520787 CCCAACCCATACGCGAGAC 60.521 63.158 15.93 0.00 0.00 3.36
488 518 2.727392 CCCCAACCCATACGCGAGA 61.727 63.158 15.93 0.00 0.00 4.04
489 519 2.203015 CCCCAACCCATACGCGAG 60.203 66.667 15.93 1.33 0.00 5.03
490 520 2.127027 AAACCCCAACCCATACGCGA 62.127 55.000 15.93 0.00 0.00 5.87
491 521 1.676303 AAACCCCAACCCATACGCG 60.676 57.895 3.53 3.53 0.00 6.01
492 522 1.887301 CAAACCCCAACCCATACGC 59.113 57.895 0.00 0.00 0.00 4.42
493 523 1.887301 GCAAACCCCAACCCATACG 59.113 57.895 0.00 0.00 0.00 3.06
494 524 0.609681 TCGCAAACCCCAACCCATAC 60.610 55.000 0.00 0.00 0.00 2.39
522 552 4.758165 CCAAACACAACTTACTTATCCGGT 59.242 41.667 0.00 0.00 0.00 5.28
525 555 7.227910 TGTCTTCCAAACACAACTTACTTATCC 59.772 37.037 0.00 0.00 0.00 2.59
526 556 8.149973 TGTCTTCCAAACACAACTTACTTATC 57.850 34.615 0.00 0.00 0.00 1.75
527 557 8.567948 CATGTCTTCCAAACACAACTTACTTAT 58.432 33.333 0.00 0.00 0.00 1.73
528 558 7.771361 TCATGTCTTCCAAACACAACTTACTTA 59.229 33.333 0.00 0.00 0.00 2.24
547 577 9.265901 CTCGGACAAAAGATAATAATCATGTCT 57.734 33.333 13.63 0.00 39.68 3.41
559 598 5.000591 TGAACATTGCTCGGACAAAAGATA 58.999 37.500 0.00 0.00 32.27 1.98
562 601 3.558505 CTGAACATTGCTCGGACAAAAG 58.441 45.455 0.00 0.00 32.27 2.27
582 621 0.467290 TTTGTCCTGGCGAAAAGGCT 60.467 50.000 0.00 0.00 46.88 4.58
603 642 3.705051 ACTCAACCATCAAAGCCATCAT 58.295 40.909 0.00 0.00 0.00 2.45
604 643 3.159213 ACTCAACCATCAAAGCCATCA 57.841 42.857 0.00 0.00 0.00 3.07
606 645 2.028748 GCAACTCAACCATCAAAGCCAT 60.029 45.455 0.00 0.00 0.00 4.40
607 646 1.340889 GCAACTCAACCATCAAAGCCA 59.659 47.619 0.00 0.00 0.00 4.75
608 647 1.666888 CGCAACTCAACCATCAAAGCC 60.667 52.381 0.00 0.00 0.00 4.35
638 677 2.203153 AGGTGCGTGCGAAAAGGT 60.203 55.556 0.00 0.00 0.00 3.50
640 679 2.170985 CGAGGTGCGTGCGAAAAG 59.829 61.111 0.00 0.00 34.64 2.27
697 2226 5.715439 ACATGGGAAACATAGAGAATGGA 57.285 39.130 0.00 0.00 40.16 3.41
897 2448 2.161410 GCAATAATGTTGAGTGGCACGA 59.839 45.455 12.71 0.00 0.00 4.35
1291 2865 4.379243 CTTGACGGGGAGCAGCGT 62.379 66.667 0.00 0.00 0.00 5.07
1326 2911 1.953231 GCTTGGCTTTGGATGCTCCC 61.953 60.000 0.50 0.00 35.03 4.30
1915 3521 4.329545 GCCTCCGTCCCTGCACAA 62.330 66.667 0.00 0.00 0.00 3.33
1922 3528 4.816984 TCTCCTCGCCTCCGTCCC 62.817 72.222 0.00 0.00 35.54 4.46
1963 3569 2.124942 GAGGAAGAAGGCCGCCAG 60.125 66.667 13.15 0.00 0.00 4.85
2040 3689 8.495949 ACGTAACATGATAAACTTTTGAGAGTG 58.504 33.333 0.00 0.00 0.00 3.51
2041 3690 8.603242 ACGTAACATGATAAACTTTTGAGAGT 57.397 30.769 0.00 0.00 0.00 3.24
2042 3691 8.926710 AGACGTAACATGATAAACTTTTGAGAG 58.073 33.333 0.00 0.00 0.00 3.20
2043 3692 8.827177 AGACGTAACATGATAAACTTTTGAGA 57.173 30.769 0.00 0.00 0.00 3.27
2044 3693 8.708742 TGAGACGTAACATGATAAACTTTTGAG 58.291 33.333 0.00 0.00 0.00 3.02
2045 3694 8.596271 TGAGACGTAACATGATAAACTTTTGA 57.404 30.769 0.00 0.00 0.00 2.69
2046 3695 9.658475 TTTGAGACGTAACATGATAAACTTTTG 57.342 29.630 0.00 0.00 0.00 2.44
2048 3697 9.878599 CTTTTGAGACGTAACATGATAAACTTT 57.121 29.630 0.00 0.00 0.00 2.66
2049 3698 9.052759 ACTTTTGAGACGTAACATGATAAACTT 57.947 29.630 0.00 0.00 0.00 2.66
2056 3747 6.508880 CGTGAAACTTTTGAGACGTAACATGA 60.509 38.462 0.00 0.00 31.75 3.07
2064 3755 3.550275 TCACTCGTGAAACTTTTGAGACG 59.450 43.478 0.00 0.00 36.53 4.18
2065 3756 4.804139 TCTCACTCGTGAAACTTTTGAGAC 59.196 41.667 1.02 0.00 37.42 3.36
2081 3794 5.049680 TCGGTGCTTTACATTTTTCTCACTC 60.050 40.000 0.00 0.00 0.00 3.51
2117 3834 6.238484 GGTGCACAGTTCATATTATGGAGAAC 60.238 42.308 20.43 0.00 40.37 3.01
2150 3870 2.549778 GGGAATCATCAGAGCTGTAGGC 60.550 54.545 0.00 0.00 42.19 3.93
2339 4101 5.395546 GCCCATGATTTCCTTTTGCAAGATA 60.396 40.000 0.00 0.00 30.57 1.98
2404 4166 4.855340 CACCCTACCAAACACATCCTAAT 58.145 43.478 0.00 0.00 0.00 1.73
2442 4204 1.878953 AAAGTGGGTTCAGTAGCACG 58.121 50.000 0.00 0.00 0.00 5.34
2443 4205 2.293399 CCAAAAGTGGGTTCAGTAGCAC 59.707 50.000 0.00 0.00 41.77 4.40
2444 4206 2.582052 CCAAAAGTGGGTTCAGTAGCA 58.418 47.619 0.00 0.00 41.77 3.49
2445 4207 2.956333 AACCAAAAGTGGGTTCAGTAGC 59.044 45.455 0.00 0.00 45.31 3.58
2451 4213 3.133901 ACCAATCAACCAAAAGTGGGTTC 59.866 43.478 0.00 0.00 45.31 3.62
2476 4238 2.168521 GCTACAAGGGTATCTGTGCAGA 59.831 50.000 4.23 4.23 42.37 4.26
2492 4276 4.773013 TCTCTTCATTCATGCATGCTACA 58.227 39.130 22.25 1.24 0.00 2.74
2503 4287 4.222366 ACTGATGTGCTCTCTCTTCATTCA 59.778 41.667 0.00 0.00 0.00 2.57
2504 4288 4.757594 ACTGATGTGCTCTCTCTTCATTC 58.242 43.478 0.00 0.00 0.00 2.67
2505 4289 4.822685 ACTGATGTGCTCTCTCTTCATT 57.177 40.909 0.00 0.00 0.00 2.57
2506 4290 4.202141 GCTACTGATGTGCTCTCTCTTCAT 60.202 45.833 0.00 0.00 0.00 2.57
2507 4291 3.130164 GCTACTGATGTGCTCTCTCTTCA 59.870 47.826 0.00 0.00 0.00 3.02
2542 4326 2.742738 CGCATCACTCGTGCATGCA 61.743 57.895 18.46 18.46 42.62 3.96
2563 4353 7.643579 TGAACATATTTTGAAACACATCGTCA 58.356 30.769 0.00 0.00 0.00 4.35
2892 4730 9.261180 TGTGTACAAAATTTGAAAAAGTGAACA 57.739 25.926 13.19 1.57 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.