Multiple sequence alignment - TraesCS2B01G072100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G072100 chr2B 100.000 2513 0 0 1 2513 38393833 38396345 0.000000e+00 4641.0
1 TraesCS2B01G072100 chr2B 90.732 1079 58 16 1170 2232 637899345 637900397 0.000000e+00 1400.0
2 TraesCS2B01G072100 chr2B 99.647 283 1 0 2231 2513 37737070 37737352 3.710000e-143 518.0
3 TraesCS2B01G072100 chr2B 99.278 277 2 0 2237 2513 37570704 37570980 3.730000e-138 501.0
4 TraesCS2B01G072100 chr2B 89.815 216 20 2 2231 2445 38028802 38029016 2.460000e-70 276.0
5 TraesCS2B01G072100 chr2B 88.837 215 20 2 2235 2445 38066413 38066627 6.890000e-66 261.0
6 TraesCS2B01G072100 chr2B 90.710 183 16 1 2264 2445 37766751 37766933 2.500000e-60 243.0
7 TraesCS2B01G072100 chr2B 88.950 181 19 1 2266 2445 38618813 38618993 3.250000e-54 222.0
8 TraesCS2B01G072100 chr2B 85.915 142 13 6 2032 2169 383564434 383564296 7.240000e-31 145.0
9 TraesCS2B01G072100 chr7A 96.466 1415 40 6 826 2232 119816453 119815041 0.000000e+00 2327.0
10 TraesCS2B01G072100 chr7A 95.927 1424 45 8 818 2234 428628192 428626775 0.000000e+00 2296.0
11 TraesCS2B01G072100 chr7A 97.506 802 18 2 1 801 119818633 119817833 0.000000e+00 1369.0
12 TraesCS2B01G072100 chr7A 96.015 803 28 2 1 801 428630451 428629651 0.000000e+00 1303.0
13 TraesCS2B01G072100 chr7A 100.000 28 0 0 2212 2239 606191182 606191155 5.000000e-03 52.8
14 TraesCS2B01G072100 chr1A 94.915 1416 61 7 826 2234 495734640 495733229 0.000000e+00 2206.0
15 TraesCS2B01G072100 chr1A 95.247 1031 39 6 1211 2234 355422875 355423902 0.000000e+00 1624.0
16 TraesCS2B01G072100 chr1A 85.356 478 66 4 313 788 462342331 462342806 2.250000e-135 492.0
17 TraesCS2B01G072100 chr1A 97.701 261 6 0 1 261 355422618 355422878 1.370000e-122 449.0
18 TraesCS2B01G072100 chr1A 80.098 613 112 9 942 1551 2283574 2282969 4.930000e-122 448.0
19 TraesCS2B01G072100 chr1A 97.004 267 7 1 1 267 495735292 495735027 4.930000e-122 448.0
20 TraesCS2B01G072100 chr2D 92.807 1432 80 11 818 2232 64954699 64953274 0.000000e+00 2052.0
21 TraesCS2B01G072100 chr2D 94.913 806 31 6 1 801 64956962 64956162 0.000000e+00 1253.0
22 TraesCS2B01G072100 chr2D 89.862 217 22 0 2231 2447 22848307 22848091 1.900000e-71 279.0
23 TraesCS2B01G072100 chr3A 95.837 1033 34 5 1211 2235 699356350 699355319 0.000000e+00 1661.0
24 TraesCS2B01G072100 chr3A 85.232 474 68 2 325 797 469829061 469828589 1.040000e-133 486.0
25 TraesCS2B01G072100 chr3A 98.084 261 5 0 1 261 699356607 699356347 2.950000e-124 455.0
26 TraesCS2B01G072100 chr7B 91.839 968 59 12 1283 2232 73430319 73429354 0.000000e+00 1332.0
27 TraesCS2B01G072100 chr7B 93.688 808 38 7 1 801 73457325 73456524 0.000000e+00 1197.0
28 TraesCS2B01G072100 chr7B 92.822 808 46 6 1 801 218823418 218822616 0.000000e+00 1160.0
29 TraesCS2B01G072100 chr7B 91.082 841 55 11 1268 2091 218822431 218821594 0.000000e+00 1120.0
30 TraesCS2B01G072100 chr7B 96.368 468 16 1 818 1285 73455061 73454595 0.000000e+00 769.0
31 TraesCS2B01G072100 chr6A 96.542 723 13 4 1 723 494013626 494012916 0.000000e+00 1186.0
32 TraesCS2B01G072100 chr6B 85.000 480 68 4 311 788 673015528 673016005 3.760000e-133 484.0
33 TraesCS2B01G072100 chr6B 91.228 57 4 1 2457 2513 572555586 572555531 2.680000e-10 76.8
34 TraesCS2B01G072100 chr5A 84.937 478 67 5 313 788 354273070 354273544 1.750000e-131 479.0
35 TraesCS2B01G072100 chr3D 80.261 613 111 9 942 1551 384009511 384010116 1.060000e-123 453.0
36 TraesCS2B01G072100 chr2A 88.312 231 27 0 2231 2461 24439216 24438986 6.850000e-71 278.0
37 TraesCS2B01G072100 chr5B 91.935 62 3 2 2453 2513 302431061 302431121 4.450000e-13 86.1
38 TraesCS2B01G072100 chr7D 90.476 63 6 0 2451 2513 463109141 463109079 1.600000e-12 84.2
39 TraesCS2B01G072100 chr4B 91.525 59 4 1 2455 2512 588428225 588428283 2.070000e-11 80.5
40 TraesCS2B01G072100 chr3B 90.323 62 4 2 2453 2513 140915255 140915195 2.070000e-11 80.5
41 TraesCS2B01G072100 chr1B 90.323 62 4 2 2453 2513 171745313 171745373 2.070000e-11 80.5
42 TraesCS2B01G072100 chr1B 90.323 62 4 2 2453 2513 171779740 171779680 2.070000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G072100 chr2B 38393833 38396345 2512 False 4641.0 4641 100.0000 1 2513 1 chr2B.!!$F6 2512
1 TraesCS2B01G072100 chr2B 637899345 637900397 1052 False 1400.0 1400 90.7320 1170 2232 1 chr2B.!!$F8 1062
2 TraesCS2B01G072100 chr7A 119815041 119818633 3592 True 1848.0 2327 96.9860 1 2232 2 chr7A.!!$R2 2231
3 TraesCS2B01G072100 chr7A 428626775 428630451 3676 True 1799.5 2296 95.9710 1 2234 2 chr7A.!!$R3 2233
4 TraesCS2B01G072100 chr1A 495733229 495735292 2063 True 1327.0 2206 95.9595 1 2234 2 chr1A.!!$R2 2233
5 TraesCS2B01G072100 chr1A 355422618 355423902 1284 False 1036.5 1624 96.4740 1 2234 2 chr1A.!!$F2 2233
6 TraesCS2B01G072100 chr1A 2282969 2283574 605 True 448.0 448 80.0980 942 1551 1 chr1A.!!$R1 609
7 TraesCS2B01G072100 chr2D 64953274 64956962 3688 True 1652.5 2052 93.8600 1 2232 2 chr2D.!!$R2 2231
8 TraesCS2B01G072100 chr3A 699355319 699356607 1288 True 1058.0 1661 96.9605 1 2235 2 chr3A.!!$R2 2234
9 TraesCS2B01G072100 chr7B 73429354 73430319 965 True 1332.0 1332 91.8390 1283 2232 1 chr7B.!!$R1 949
10 TraesCS2B01G072100 chr7B 218821594 218823418 1824 True 1140.0 1160 91.9520 1 2091 2 chr7B.!!$R3 2090
11 TraesCS2B01G072100 chr7B 73454595 73457325 2730 True 983.0 1197 95.0280 1 1285 2 chr7B.!!$R2 1284
12 TraesCS2B01G072100 chr6A 494012916 494013626 710 True 1186.0 1186 96.5420 1 723 1 chr6A.!!$R1 722
13 TraesCS2B01G072100 chr3D 384009511 384010116 605 False 453.0 453 80.2610 942 1551 1 chr3D.!!$F1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
801 3224 0.107017 CTCCAATCGATGCCACCCTT 60.107 55.0 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2282 6177 0.110486 TGCAAGGACCTTGAACCCTC 59.89 55.0 33.92 17.27 43.42 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
352 2775 2.762745 TGACTTGGCTAGAAAACGACC 58.237 47.619 2.20 0.00 0.00 4.79
382 2805 0.744281 GTGAGAGGAGCCAGTCTAGC 59.256 60.000 0.00 0.00 0.00 3.42
412 2835 7.157050 CATTGTGTGCTTATATGACATTTGC 57.843 36.000 0.00 0.00 0.00 3.68
552 2975 8.025445 GCTCAAATCAGCTTAGAATGAGAAAAA 58.975 33.333 17.41 0.00 37.56 1.94
555 2978 9.339492 CAAATCAGCTTAGAATGAGAAAAACTC 57.661 33.333 0.00 0.00 45.11 3.01
779 3202 1.000171 CGAGATGAGATGATTCGGCCA 60.000 52.381 2.24 0.00 0.00 5.36
801 3224 0.107017 CTCCAATCGATGCCACCCTT 60.107 55.000 0.00 0.00 0.00 3.95
802 3225 0.331278 TCCAATCGATGCCACCCTTT 59.669 50.000 0.00 0.00 0.00 3.11
803 3226 0.457035 CCAATCGATGCCACCCTTTG 59.543 55.000 0.00 0.00 0.00 2.77
804 3227 1.176527 CAATCGATGCCACCCTTTGT 58.823 50.000 0.00 0.00 0.00 2.83
805 3228 1.135315 CAATCGATGCCACCCTTTGTG 60.135 52.381 0.00 0.00 45.01 3.33
806 3229 1.315257 ATCGATGCCACCCTTTGTGC 61.315 55.000 0.00 0.00 44.01 4.57
807 3230 1.973281 CGATGCCACCCTTTGTGCT 60.973 57.895 0.00 0.00 44.01 4.40
808 3231 1.588082 GATGCCACCCTTTGTGCTG 59.412 57.895 0.00 0.00 44.01 4.41
809 3232 1.152483 ATGCCACCCTTTGTGCTGT 60.152 52.632 0.00 0.00 44.01 4.40
810 3233 0.760189 ATGCCACCCTTTGTGCTGTT 60.760 50.000 0.00 0.00 44.01 3.16
811 3234 1.067916 GCCACCCTTTGTGCTGTTG 59.932 57.895 0.00 0.00 44.01 3.33
814 4494 0.670162 CACCCTTTGTGCTGTTGGAG 59.330 55.000 0.00 0.00 38.34 3.86
824 4504 2.035066 GTGCTGTTGGAGAGTTGCAAAT 59.965 45.455 0.00 0.00 36.34 2.32
910 4778 9.772973 TCTTTGTGCTGAAATTAGTTACTTCTA 57.227 29.630 0.00 0.00 0.00 2.10
1135 5003 1.576421 CAAGGAACAAGTGGCGAGC 59.424 57.895 0.00 0.00 0.00 5.03
1387 5258 3.947834 TGTTGAGTATGATCTCGCTGAGA 59.052 43.478 10.02 10.02 43.20 3.27
1410 5281 8.090788 AGAGGTTGGCTGTTTTAGATTATCTA 57.909 34.615 0.00 0.00 0.00 1.98
1536 5407 6.581712 AGTTGATGTTAGTTGGTGCATTTTT 58.418 32.000 0.00 0.00 0.00 1.94
1821 5707 5.702670 AGATGTCGTGTTGATTCACAGATTT 59.297 36.000 0.00 0.00 38.12 2.17
2066 5960 3.637769 ACCAAACAAAGTCTAAGCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
2072 5967 4.215109 ACAAAGTCTAAGCCCAACATGTT 58.785 39.130 4.92 4.92 0.00 2.71
2188 6083 5.773176 TGTCTGTACTTAACATGTCTCAGGA 59.227 40.000 0.00 0.00 37.50 3.86
2228 6123 1.068333 CATGCAGGCTACCAAACACAC 60.068 52.381 0.00 0.00 0.00 3.82
2234 6129 2.647802 AGGCTACCAAACACACCCTTAT 59.352 45.455 0.00 0.00 0.00 1.73
2235 6130 3.847780 AGGCTACCAAACACACCCTTATA 59.152 43.478 0.00 0.00 0.00 0.98
2236 6131 4.080526 AGGCTACCAAACACACCCTTATAG 60.081 45.833 0.00 0.00 0.00 1.31
2237 6132 4.080751 GGCTACCAAACACACCCTTATAGA 60.081 45.833 0.00 0.00 0.00 1.98
2238 6133 5.397559 GGCTACCAAACACACCCTTATAGAT 60.398 44.000 0.00 0.00 0.00 1.98
2239 6134 5.758784 GCTACCAAACACACCCTTATAGATC 59.241 44.000 0.00 0.00 0.00 2.75
2240 6135 5.112129 ACCAAACACACCCTTATAGATCC 57.888 43.478 0.00 0.00 0.00 3.36
2241 6136 4.538490 ACCAAACACACCCTTATAGATCCA 59.462 41.667 0.00 0.00 0.00 3.41
2242 6137 5.126067 CCAAACACACCCTTATAGATCCAG 58.874 45.833 0.00 0.00 0.00 3.86
2243 6138 5.339200 CCAAACACACCCTTATAGATCCAGT 60.339 44.000 0.00 0.00 0.00 4.00
2244 6139 5.359194 AACACACCCTTATAGATCCAGTG 57.641 43.478 0.00 0.00 0.00 3.66
2245 6140 4.620723 ACACACCCTTATAGATCCAGTGA 58.379 43.478 0.00 0.00 0.00 3.41
2246 6141 5.219739 ACACACCCTTATAGATCCAGTGAT 58.780 41.667 0.00 0.00 0.00 3.06
2247 6142 5.070981 ACACACCCTTATAGATCCAGTGATG 59.929 44.000 0.00 0.00 0.00 3.07
2248 6143 5.070981 CACACCCTTATAGATCCAGTGATGT 59.929 44.000 0.00 0.00 0.00 3.06
2249 6144 5.667626 ACACCCTTATAGATCCAGTGATGTT 59.332 40.000 0.00 0.00 0.00 2.71
2250 6145 6.844388 ACACCCTTATAGATCCAGTGATGTTA 59.156 38.462 0.00 0.00 0.00 2.41
2251 6146 7.015682 ACACCCTTATAGATCCAGTGATGTTAG 59.984 40.741 0.00 0.00 0.00 2.34
2252 6147 7.015682 CACCCTTATAGATCCAGTGATGTTAGT 59.984 40.741 0.00 0.00 0.00 2.24
2253 6148 7.233757 ACCCTTATAGATCCAGTGATGTTAGTC 59.766 40.741 0.00 0.00 0.00 2.59
2254 6149 7.233553 CCCTTATAGATCCAGTGATGTTAGTCA 59.766 40.741 0.00 0.00 0.00 3.41
2255 6150 8.085296 CCTTATAGATCCAGTGATGTTAGTCAC 58.915 40.741 0.00 0.00 46.90 3.67
2264 6159 5.734855 GTGATGTTAGTCACTTGTTGTGT 57.265 39.130 0.08 0.00 46.27 3.72
2265 6160 5.738370 GTGATGTTAGTCACTTGTTGTGTC 58.262 41.667 0.08 0.00 46.27 3.67
2266 6161 5.523916 GTGATGTTAGTCACTTGTTGTGTCT 59.476 40.000 0.08 0.00 46.27 3.41
2267 6162 5.753438 TGATGTTAGTCACTTGTTGTGTCTC 59.247 40.000 0.00 0.00 46.27 3.36
2268 6163 4.439057 TGTTAGTCACTTGTTGTGTCTCC 58.561 43.478 0.00 0.00 46.27 3.71
2269 6164 4.161565 TGTTAGTCACTTGTTGTGTCTCCT 59.838 41.667 0.00 0.00 46.27 3.69
2270 6165 3.460857 AGTCACTTGTTGTGTCTCCTC 57.539 47.619 0.00 0.00 46.27 3.71
2271 6166 3.034635 AGTCACTTGTTGTGTCTCCTCT 58.965 45.455 0.00 0.00 46.27 3.69
2272 6167 4.215908 AGTCACTTGTTGTGTCTCCTCTA 58.784 43.478 0.00 0.00 46.27 2.43
2273 6168 4.835615 AGTCACTTGTTGTGTCTCCTCTAT 59.164 41.667 0.00 0.00 46.27 1.98
2274 6169 4.926238 GTCACTTGTTGTGTCTCCTCTATG 59.074 45.833 0.00 0.00 46.27 2.23
2275 6170 4.588951 TCACTTGTTGTGTCTCCTCTATGT 59.411 41.667 0.00 0.00 46.27 2.29
2276 6171 4.687948 CACTTGTTGTGTCTCCTCTATGTG 59.312 45.833 0.00 0.00 41.53 3.21
2277 6172 3.961480 TGTTGTGTCTCCTCTATGTGG 57.039 47.619 0.00 0.00 0.00 4.17
2278 6173 3.506398 TGTTGTGTCTCCTCTATGTGGA 58.494 45.455 0.00 0.00 0.00 4.02
2279 6174 3.258372 TGTTGTGTCTCCTCTATGTGGAC 59.742 47.826 0.00 0.00 0.00 4.02
2280 6175 3.458044 TGTGTCTCCTCTATGTGGACT 57.542 47.619 0.00 0.00 0.00 3.85
2281 6176 4.586306 TGTGTCTCCTCTATGTGGACTA 57.414 45.455 0.00 0.00 0.00 2.59
2282 6177 4.527944 TGTGTCTCCTCTATGTGGACTAG 58.472 47.826 0.00 0.00 0.00 2.57
2283 6178 4.227527 TGTGTCTCCTCTATGTGGACTAGA 59.772 45.833 0.00 0.00 0.00 2.43
2284 6179 4.819630 GTGTCTCCTCTATGTGGACTAGAG 59.180 50.000 0.00 0.00 41.18 2.43
2290 6185 4.537751 CTCTATGTGGACTAGAGGGTTCA 58.462 47.826 0.00 0.00 38.92 3.18
2291 6186 4.942944 TCTATGTGGACTAGAGGGTTCAA 58.057 43.478 0.00 0.00 0.00 2.69
2292 6187 4.956700 TCTATGTGGACTAGAGGGTTCAAG 59.043 45.833 0.00 0.00 0.00 3.02
2293 6188 2.257207 TGTGGACTAGAGGGTTCAAGG 58.743 52.381 0.00 0.00 0.00 3.61
2294 6189 2.258109 GTGGACTAGAGGGTTCAAGGT 58.742 52.381 0.00 0.00 0.00 3.50
2295 6190 2.234168 GTGGACTAGAGGGTTCAAGGTC 59.766 54.545 0.00 0.00 0.00 3.85
2296 6191 1.832366 GGACTAGAGGGTTCAAGGTCC 59.168 57.143 0.00 0.00 34.19 4.46
2297 6192 2.560158 GGACTAGAGGGTTCAAGGTCCT 60.560 54.545 0.00 0.00 36.48 3.85
2298 6193 3.174779 GACTAGAGGGTTCAAGGTCCTT 58.825 50.000 0.00 0.00 0.00 3.36
2299 6194 2.907042 ACTAGAGGGTTCAAGGTCCTTG 59.093 50.000 23.69 23.69 42.25 3.61
2300 6195 0.402121 AGAGGGTTCAAGGTCCTTGC 59.598 55.000 24.66 12.81 40.84 4.01
2301 6196 0.110486 GAGGGTTCAAGGTCCTTGCA 59.890 55.000 24.66 13.26 40.84 4.08
2302 6197 0.111253 AGGGTTCAAGGTCCTTGCAG 59.889 55.000 24.66 3.98 40.84 4.41
2303 6198 0.178990 GGGTTCAAGGTCCTTGCAGT 60.179 55.000 24.66 0.00 40.84 4.40
2304 6199 1.692411 GGTTCAAGGTCCTTGCAGTT 58.308 50.000 24.66 0.00 40.84 3.16
2305 6200 2.488347 GGGTTCAAGGTCCTTGCAGTTA 60.488 50.000 24.66 6.31 40.84 2.24
2306 6201 2.814336 GGTTCAAGGTCCTTGCAGTTAG 59.186 50.000 24.66 1.78 40.84 2.34
2307 6202 3.477530 GTTCAAGGTCCTTGCAGTTAGT 58.522 45.455 24.66 0.00 40.84 2.24
2308 6203 3.857157 TCAAGGTCCTTGCAGTTAGTT 57.143 42.857 24.66 0.00 40.84 2.24
2309 6204 3.476552 TCAAGGTCCTTGCAGTTAGTTG 58.523 45.455 24.66 0.21 40.84 3.16
2310 6205 3.135712 TCAAGGTCCTTGCAGTTAGTTGA 59.864 43.478 24.66 2.74 40.84 3.18
2311 6206 3.857157 AGGTCCTTGCAGTTAGTTGAA 57.143 42.857 0.00 0.00 0.00 2.69
2312 6207 3.477530 AGGTCCTTGCAGTTAGTTGAAC 58.522 45.455 0.00 0.00 38.44 3.18
2313 6208 2.552743 GGTCCTTGCAGTTAGTTGAACC 59.447 50.000 0.00 0.00 39.02 3.62
2314 6209 3.211045 GTCCTTGCAGTTAGTTGAACCA 58.789 45.455 0.00 0.00 39.02 3.67
2315 6210 3.821033 GTCCTTGCAGTTAGTTGAACCAT 59.179 43.478 0.00 0.00 39.02 3.55
2316 6211 4.072131 TCCTTGCAGTTAGTTGAACCATC 58.928 43.478 0.00 0.00 39.02 3.51
2317 6212 4.074970 CCTTGCAGTTAGTTGAACCATCT 58.925 43.478 0.00 0.00 39.02 2.90
2318 6213 4.154918 CCTTGCAGTTAGTTGAACCATCTC 59.845 45.833 0.00 0.00 39.02 2.75
2319 6214 4.623932 TGCAGTTAGTTGAACCATCTCT 57.376 40.909 0.00 0.00 39.02 3.10
2320 6215 4.318332 TGCAGTTAGTTGAACCATCTCTG 58.682 43.478 0.00 0.00 39.02 3.35
2321 6216 4.202357 TGCAGTTAGTTGAACCATCTCTGT 60.202 41.667 0.00 0.00 39.02 3.41
2322 6217 4.757149 GCAGTTAGTTGAACCATCTCTGTT 59.243 41.667 0.00 0.00 39.02 3.16
2323 6218 5.106908 GCAGTTAGTTGAACCATCTCTGTTC 60.107 44.000 0.00 0.00 41.91 3.18
2324 6219 6.226787 CAGTTAGTTGAACCATCTCTGTTCT 58.773 40.000 4.94 0.00 42.04 3.01
2325 6220 6.146837 CAGTTAGTTGAACCATCTCTGTTCTG 59.853 42.308 4.94 0.00 42.04 3.02
2326 6221 4.963318 AGTTGAACCATCTCTGTTCTGA 57.037 40.909 4.94 0.00 42.04 3.27
2327 6222 5.296151 AGTTGAACCATCTCTGTTCTGAA 57.704 39.130 4.94 0.00 42.04 3.02
2328 6223 5.059833 AGTTGAACCATCTCTGTTCTGAAC 58.940 41.667 13.49 13.49 42.04 3.18
2329 6224 4.008074 TGAACCATCTCTGTTCTGAACC 57.992 45.455 17.26 1.11 42.04 3.62
2330 6225 3.390967 TGAACCATCTCTGTTCTGAACCA 59.609 43.478 17.26 3.88 42.04 3.67
2331 6226 4.141505 TGAACCATCTCTGTTCTGAACCAA 60.142 41.667 17.26 5.12 42.04 3.67
2332 6227 3.744660 ACCATCTCTGTTCTGAACCAAC 58.255 45.455 17.26 0.00 0.00 3.77
2333 6228 3.136443 ACCATCTCTGTTCTGAACCAACA 59.864 43.478 17.26 0.00 32.75 3.33
2334 6229 4.136796 CCATCTCTGTTCTGAACCAACAA 58.863 43.478 17.26 0.00 33.36 2.83
2335 6230 4.023707 CCATCTCTGTTCTGAACCAACAAC 60.024 45.833 17.26 0.00 33.36 3.32
2336 6231 4.487714 TCTCTGTTCTGAACCAACAACT 57.512 40.909 17.26 0.00 33.36 3.16
2337 6232 4.442706 TCTCTGTTCTGAACCAACAACTC 58.557 43.478 17.26 0.00 33.36 3.01
2338 6233 4.162320 TCTCTGTTCTGAACCAACAACTCT 59.838 41.667 17.26 0.00 33.36 3.24
2339 6234 5.362717 TCTCTGTTCTGAACCAACAACTCTA 59.637 40.000 17.26 0.00 33.36 2.43
2340 6235 6.042093 TCTCTGTTCTGAACCAACAACTCTAT 59.958 38.462 17.26 0.00 33.36 1.98
2341 6236 6.591935 TCTGTTCTGAACCAACAACTCTATT 58.408 36.000 17.26 0.00 33.36 1.73
2342 6237 6.483307 TCTGTTCTGAACCAACAACTCTATTG 59.517 38.462 17.26 0.00 33.36 1.90
2350 6245 5.389859 CCAACAACTCTATTGGCATGAAA 57.610 39.130 0.00 0.00 39.07 2.69
2351 6246 5.782047 CCAACAACTCTATTGGCATGAAAA 58.218 37.500 0.00 0.00 39.07 2.29
2352 6247 6.400568 CCAACAACTCTATTGGCATGAAAAT 58.599 36.000 0.00 0.00 39.07 1.82
2353 6248 6.532657 CCAACAACTCTATTGGCATGAAAATC 59.467 38.462 0.00 0.00 39.07 2.17
2354 6249 6.839124 ACAACTCTATTGGCATGAAAATCA 57.161 33.333 0.00 0.00 0.00 2.57
2355 6250 7.230849 ACAACTCTATTGGCATGAAAATCAA 57.769 32.000 0.00 0.00 0.00 2.57
2356 6251 7.318141 ACAACTCTATTGGCATGAAAATCAAG 58.682 34.615 0.00 0.00 0.00 3.02
2357 6252 7.039504 ACAACTCTATTGGCATGAAAATCAAGT 60.040 33.333 0.00 0.28 0.00 3.16
2358 6253 6.860080 ACTCTATTGGCATGAAAATCAAGTG 58.140 36.000 0.00 0.00 0.00 3.16
2359 6254 6.660521 ACTCTATTGGCATGAAAATCAAGTGA 59.339 34.615 0.00 0.00 0.00 3.41
2360 6255 7.177216 ACTCTATTGGCATGAAAATCAAGTGAA 59.823 33.333 0.00 0.00 0.00 3.18
2361 6256 8.070034 TCTATTGGCATGAAAATCAAGTGAAT 57.930 30.769 0.00 0.00 0.00 2.57
2362 6257 6.978343 ATTGGCATGAAAATCAAGTGAATG 57.022 33.333 0.00 0.00 0.00 2.67
2363 6258 5.725325 TGGCATGAAAATCAAGTGAATGA 57.275 34.783 0.00 0.00 0.00 2.57
2364 6259 6.288941 TGGCATGAAAATCAAGTGAATGAT 57.711 33.333 0.00 0.00 41.74 2.45
2365 6260 6.334989 TGGCATGAAAATCAAGTGAATGATC 58.665 36.000 0.00 0.00 39.08 2.92
2366 6261 6.071278 TGGCATGAAAATCAAGTGAATGATCA 60.071 34.615 0.00 0.00 39.08 2.92
2367 6262 6.984474 GGCATGAAAATCAAGTGAATGATCAT 59.016 34.615 1.18 1.18 39.08 2.45
2368 6263 7.042725 GGCATGAAAATCAAGTGAATGATCATG 60.043 37.037 9.46 16.93 39.08 3.07
2369 6264 7.516785 GCATGAAAATCAAGTGAATGATCATGC 60.517 37.037 23.54 23.54 46.52 4.06
2370 6265 6.926313 TGAAAATCAAGTGAATGATCATGCA 58.074 32.000 12.72 12.72 39.08 3.96
2371 6266 7.379750 TGAAAATCAAGTGAATGATCATGCAA 58.620 30.769 18.35 2.97 39.08 4.08
2372 6267 7.329962 TGAAAATCAAGTGAATGATCATGCAAC 59.670 33.333 18.35 12.11 39.08 4.17
2373 6268 5.907866 ATCAAGTGAATGATCATGCAACA 57.092 34.783 18.35 9.09 35.07 3.33
2374 6269 5.708877 TCAAGTGAATGATCATGCAACAA 57.291 34.783 18.35 1.88 38.01 2.83
2375 6270 6.275494 TCAAGTGAATGATCATGCAACAAT 57.725 33.333 18.35 8.43 38.01 2.71
2376 6271 6.693466 TCAAGTGAATGATCATGCAACAATT 58.307 32.000 18.35 13.27 38.01 2.32
2377 6272 7.156000 TCAAGTGAATGATCATGCAACAATTT 58.844 30.769 18.35 5.56 38.01 1.82
2378 6273 6.961359 AGTGAATGATCATGCAACAATTTG 57.039 33.333 18.35 0.00 38.01 2.32
2379 6274 6.460781 AGTGAATGATCATGCAACAATTTGT 58.539 32.000 18.35 0.00 38.01 2.83
2380 6275 6.932400 AGTGAATGATCATGCAACAATTTGTT 59.068 30.769 18.35 8.97 38.38 2.83
2381 6276 7.442969 AGTGAATGATCATGCAACAATTTGTTT 59.557 29.630 18.35 0.00 36.81 2.83
2382 6277 8.071368 GTGAATGATCATGCAACAATTTGTTTT 58.929 29.630 18.35 1.43 36.81 2.43
2383 6278 8.070769 TGAATGATCATGCAACAATTTGTTTTG 58.929 29.630 14.39 10.20 38.77 2.44
2384 6279 6.922247 TGATCATGCAACAATTTGTTTTGT 57.078 29.167 12.02 0.00 38.77 2.83
2385 6280 8.604640 ATGATCATGCAACAATTTGTTTTGTA 57.395 26.923 12.02 3.50 38.77 2.41
2386 6281 8.604640 TGATCATGCAACAATTTGTTTTGTAT 57.395 26.923 12.02 5.64 38.77 2.29
2387 6282 8.710551 TGATCATGCAACAATTTGTTTTGTATC 58.289 29.630 12.02 11.42 38.77 2.24
2388 6283 8.604640 ATCATGCAACAATTTGTTTTGTATCA 57.395 26.923 12.02 0.00 38.77 2.15
2389 6284 8.604640 TCATGCAACAATTTGTTTTGTATCAT 57.395 26.923 12.02 6.57 38.77 2.45
2390 6285 8.710551 TCATGCAACAATTTGTTTTGTATCATC 58.289 29.630 12.02 0.00 38.77 2.92
2391 6286 8.496751 CATGCAACAATTTGTTTTGTATCATCA 58.503 29.630 12.02 0.00 38.77 3.07
2392 6287 8.604640 TGCAACAATTTGTTTTGTATCATCAT 57.395 26.923 12.02 0.00 38.77 2.45
2393 6288 9.702494 TGCAACAATTTGTTTTGTATCATCATA 57.298 25.926 12.02 0.00 38.77 2.15
2412 6307 9.793259 TCATCATAAATATAAGGTTCAAGGTCC 57.207 33.333 0.00 0.00 0.00 4.46
2413 6308 9.799106 CATCATAAATATAAGGTTCAAGGTCCT 57.201 33.333 0.00 0.00 35.34 3.85
2415 6310 9.627123 TCATAAATATAAGGTTCAAGGTCCTTG 57.373 33.333 23.69 23.69 42.97 3.61
2416 6311 9.408648 CATAAATATAAGGTTCAAGGTCCTTGT 57.591 33.333 27.29 13.07 42.97 3.16
2417 6312 7.703058 AAATATAAGGTTCAAGGTCCTTGTG 57.297 36.000 27.29 7.83 42.97 3.33
2418 6313 2.364972 AAGGTTCAAGGTCCTTGTGG 57.635 50.000 27.29 6.33 41.75 4.17
2419 6314 1.222567 AGGTTCAAGGTCCTTGTGGT 58.777 50.000 27.29 11.04 41.66 4.16
2420 6315 1.569072 AGGTTCAAGGTCCTTGTGGTT 59.431 47.619 27.29 12.10 41.66 3.67
2421 6316 2.781174 AGGTTCAAGGTCCTTGTGGTTA 59.219 45.455 27.29 8.51 41.66 2.85
2422 6317 3.203487 AGGTTCAAGGTCCTTGTGGTTAA 59.797 43.478 27.29 13.71 41.66 2.01
2423 6318 4.141018 AGGTTCAAGGTCCTTGTGGTTAAT 60.141 41.667 27.29 8.92 41.66 1.40
2424 6319 4.587262 GGTTCAAGGTCCTTGTGGTTAATT 59.413 41.667 27.29 0.00 41.66 1.40
2425 6320 5.771165 GGTTCAAGGTCCTTGTGGTTAATTA 59.229 40.000 27.29 5.73 41.66 1.40
2426 6321 6.072119 GGTTCAAGGTCCTTGTGGTTAATTAG 60.072 42.308 27.29 1.60 41.66 1.73
2427 6322 6.195600 TCAAGGTCCTTGTGGTTAATTAGT 57.804 37.500 27.29 0.00 41.66 2.24
2428 6323 6.235664 TCAAGGTCCTTGTGGTTAATTAGTC 58.764 40.000 27.29 0.00 41.66 2.59
2429 6324 6.043938 TCAAGGTCCTTGTGGTTAATTAGTCT 59.956 38.462 27.29 0.00 41.66 3.24
2430 6325 6.449830 AGGTCCTTGTGGTTAATTAGTCTT 57.550 37.500 0.00 0.00 34.23 3.01
2431 6326 7.563724 AGGTCCTTGTGGTTAATTAGTCTTA 57.436 36.000 0.00 0.00 34.23 2.10
2432 6327 8.159229 AGGTCCTTGTGGTTAATTAGTCTTAT 57.841 34.615 0.00 0.00 34.23 1.73
2433 6328 8.047310 AGGTCCTTGTGGTTAATTAGTCTTATG 58.953 37.037 0.00 0.00 34.23 1.90
2434 6329 8.044908 GGTCCTTGTGGTTAATTAGTCTTATGA 58.955 37.037 0.00 0.00 34.23 2.15
2435 6330 9.614792 GTCCTTGTGGTTAATTAGTCTTATGAT 57.385 33.333 0.00 0.00 34.23 2.45
2477 6372 4.846168 AAAAAGATACTCCCTCTGTCCC 57.154 45.455 0.00 0.00 0.00 4.46
2478 6373 3.491766 AAAGATACTCCCTCTGTCCCA 57.508 47.619 0.00 0.00 0.00 4.37
2479 6374 3.491766 AAGATACTCCCTCTGTCCCAA 57.508 47.619 0.00 0.00 0.00 4.12
2480 6375 3.491766 AGATACTCCCTCTGTCCCAAA 57.508 47.619 0.00 0.00 0.00 3.28
2481 6376 3.803340 AGATACTCCCTCTGTCCCAAAA 58.197 45.455 0.00 0.00 0.00 2.44
2482 6377 4.375313 AGATACTCCCTCTGTCCCAAAAT 58.625 43.478 0.00 0.00 0.00 1.82
2483 6378 5.538877 AGATACTCCCTCTGTCCCAAAATA 58.461 41.667 0.00 0.00 0.00 1.40
2484 6379 6.153924 AGATACTCCCTCTGTCCCAAAATAT 58.846 40.000 0.00 0.00 0.00 1.28
2485 6380 7.313731 AGATACTCCCTCTGTCCCAAAATATA 58.686 38.462 0.00 0.00 0.00 0.86
2486 6381 7.794683 AGATACTCCCTCTGTCCCAAAATATAA 59.205 37.037 0.00 0.00 0.00 0.98
2487 6382 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
2488 6383 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
2489 6384 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
2490 6385 7.129504 ACTCCCTCTGTCCCAAAATATAAGAAT 59.870 37.037 0.00 0.00 0.00 2.40
2491 6386 7.290061 TCCCTCTGTCCCAAAATATAAGAATG 58.710 38.462 0.00 0.00 0.00 2.67
2492 6387 7.062957 CCCTCTGTCCCAAAATATAAGAATGT 58.937 38.462 0.00 0.00 0.00 2.71
2493 6388 7.561356 CCCTCTGTCCCAAAATATAAGAATGTT 59.439 37.037 0.00 0.00 0.00 2.71
2494 6389 8.624776 CCTCTGTCCCAAAATATAAGAATGTTC 58.375 37.037 0.00 0.00 0.00 3.18
2495 6390 9.401058 CTCTGTCCCAAAATATAAGAATGTTCT 57.599 33.333 0.00 0.00 39.74 3.01
2496 6391 9.396022 TCTGTCCCAAAATATAAGAATGTTCTC 57.604 33.333 0.00 0.00 36.28 2.87
2497 6392 9.177608 CTGTCCCAAAATATAAGAATGTTCTCA 57.822 33.333 0.00 0.00 36.28 3.27
2498 6393 9.527157 TGTCCCAAAATATAAGAATGTTCTCAA 57.473 29.630 0.00 0.00 36.28 3.02
2499 6394 9.788960 GTCCCAAAATATAAGAATGTTCTCAAC 57.211 33.333 0.00 0.00 36.28 3.18
2500 6395 9.527157 TCCCAAAATATAAGAATGTTCTCAACA 57.473 29.630 0.00 0.00 46.94 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
352 2775 3.274288 GCTCCTCTCACAATTAGTTGGG 58.726 50.000 2.81 0.00 40.20 4.12
412 2835 4.451629 TGTTCCCTAGCTCTTCTTAACG 57.548 45.455 0.00 0.00 0.00 3.18
552 2975 5.872963 AGTACATAAACGGAAAAAGGGAGT 58.127 37.500 0.00 0.00 0.00 3.85
555 2978 6.741109 ACAAAGTACATAAACGGAAAAAGGG 58.259 36.000 0.00 0.00 0.00 3.95
779 3202 1.224592 GTGGCATCGATTGGAGGGT 59.775 57.895 0.00 0.00 0.00 4.34
801 3224 1.024271 GCAACTCTCCAACAGCACAA 58.976 50.000 0.00 0.00 0.00 3.33
802 3225 0.107263 TGCAACTCTCCAACAGCACA 60.107 50.000 0.00 0.00 0.00 4.57
803 3226 1.024271 TTGCAACTCTCCAACAGCAC 58.976 50.000 0.00 0.00 0.00 4.40
804 3227 1.761449 TTTGCAACTCTCCAACAGCA 58.239 45.000 0.00 0.00 0.00 4.41
805 3228 4.708726 ATATTTGCAACTCTCCAACAGC 57.291 40.909 0.00 0.00 0.00 4.40
806 3229 7.951530 AAAAATATTTGCAACTCTCCAACAG 57.048 32.000 0.00 0.00 0.00 3.16
854 4722 6.703319 TCATTTCAGCACCATTTCATCAATT 58.297 32.000 0.00 0.00 0.00 2.32
1135 5003 3.366273 CCAACAGGACCATTCACAAATCG 60.366 47.826 0.00 0.00 0.00 3.34
1387 5258 8.329502 AGTTAGATAATCTAAAACAGCCAACCT 58.670 33.333 0.00 0.00 40.30 3.50
1410 5281 5.147767 AGGCCTTTTTCCTTATGTTCAGTT 58.852 37.500 0.00 0.00 0.00 3.16
1424 5295 7.445096 CCATCTTCACAAAATTAAGGCCTTTTT 59.555 33.333 26.08 16.37 0.00 1.94
1633 5513 5.163364 ACATGTTGAACCATTTAAGCACCAA 60.163 36.000 0.00 0.00 0.00 3.67
1788 5669 1.795768 ACACGACATCTCGCAAACAT 58.204 45.000 0.00 0.00 44.33 2.71
1935 5824 9.316730 GCATACATCATTTGACCAACATTTTAT 57.683 29.630 0.00 0.00 0.00 1.40
1937 5826 6.594937 GGCATACATCATTTGACCAACATTTT 59.405 34.615 0.00 0.00 0.00 1.82
2066 5960 5.095145 AGCATGTATCTGTCAGAACATGT 57.905 39.130 31.69 23.97 41.00 3.21
2072 5967 5.046663 TGTTTGGTAGCATGTATCTGTCAGA 60.047 40.000 4.68 4.68 0.00 3.27
2188 6083 3.724478 TGATCCTGTCATAGTGTTCCCT 58.276 45.455 0.00 0.00 0.00 4.20
2228 6123 7.233553 TGACTAACATCACTGGATCTATAAGGG 59.766 40.741 0.00 0.00 0.00 3.95
2254 6149 4.262635 CCACATAGAGGAGACACAACAAGT 60.263 45.833 0.00 0.00 0.00 3.16
2255 6150 4.021104 TCCACATAGAGGAGACACAACAAG 60.021 45.833 0.00 0.00 0.00 3.16
2256 6151 3.901222 TCCACATAGAGGAGACACAACAA 59.099 43.478 0.00 0.00 0.00 2.83
2257 6152 3.258372 GTCCACATAGAGGAGACACAACA 59.742 47.826 0.00 0.00 35.42 3.33
2258 6153 3.511934 AGTCCACATAGAGGAGACACAAC 59.488 47.826 0.00 0.00 35.42 3.32
2259 6154 3.779444 AGTCCACATAGAGGAGACACAA 58.221 45.455 0.00 0.00 35.42 3.33
2260 6155 3.458044 AGTCCACATAGAGGAGACACA 57.542 47.619 0.00 0.00 35.42 3.72
2261 6156 4.783055 TCTAGTCCACATAGAGGAGACAC 58.217 47.826 0.00 0.00 35.42 3.67
2262 6157 5.042463 CTCTAGTCCACATAGAGGAGACA 57.958 47.826 2.67 0.00 41.66 3.41
2268 6163 4.537751 TGAACCCTCTAGTCCACATAGAG 58.462 47.826 3.51 3.51 43.91 2.43
2269 6164 4.603094 TGAACCCTCTAGTCCACATAGA 57.397 45.455 0.00 0.00 0.00 1.98
2270 6165 4.100189 CCTTGAACCCTCTAGTCCACATAG 59.900 50.000 0.00 0.00 0.00 2.23
2271 6166 4.030913 CCTTGAACCCTCTAGTCCACATA 58.969 47.826 0.00 0.00 0.00 2.29
2272 6167 2.840651 CCTTGAACCCTCTAGTCCACAT 59.159 50.000 0.00 0.00 0.00 3.21
2273 6168 2.257207 CCTTGAACCCTCTAGTCCACA 58.743 52.381 0.00 0.00 0.00 4.17
2274 6169 2.234168 GACCTTGAACCCTCTAGTCCAC 59.766 54.545 0.00 0.00 0.00 4.02
2275 6170 2.537143 GACCTTGAACCCTCTAGTCCA 58.463 52.381 0.00 0.00 0.00 4.02
2276 6171 1.832366 GGACCTTGAACCCTCTAGTCC 59.168 57.143 0.00 0.00 0.00 3.85
2277 6172 2.822697 AGGACCTTGAACCCTCTAGTC 58.177 52.381 0.00 0.00 0.00 2.59
2278 6173 2.907042 CAAGGACCTTGAACCCTCTAGT 59.093 50.000 27.43 0.00 43.42 2.57
2279 6174 2.355209 GCAAGGACCTTGAACCCTCTAG 60.355 54.545 33.92 7.40 43.42 2.43
2280 6175 1.628846 GCAAGGACCTTGAACCCTCTA 59.371 52.381 33.92 0.00 43.42 2.43
2281 6176 0.402121 GCAAGGACCTTGAACCCTCT 59.598 55.000 33.92 0.00 43.42 3.69
2282 6177 0.110486 TGCAAGGACCTTGAACCCTC 59.890 55.000 33.92 17.27 43.42 4.30
2283 6178 0.111253 CTGCAAGGACCTTGAACCCT 59.889 55.000 33.92 0.00 43.42 4.34
2284 6179 0.178990 ACTGCAAGGACCTTGAACCC 60.179 55.000 33.92 18.27 43.42 4.11
2285 6180 1.692411 AACTGCAAGGACCTTGAACC 58.308 50.000 33.92 18.60 43.42 3.62
2286 6181 3.477530 ACTAACTGCAAGGACCTTGAAC 58.522 45.455 33.92 19.26 43.42 3.18
2287 6182 3.857157 ACTAACTGCAAGGACCTTGAA 57.143 42.857 33.92 24.92 43.42 2.69
2288 6183 3.135712 TCAACTAACTGCAAGGACCTTGA 59.864 43.478 33.92 19.01 43.42 3.02
2289 6184 3.476552 TCAACTAACTGCAAGGACCTTG 58.523 45.455 27.16 27.16 43.57 3.61
2290 6185 3.857157 TCAACTAACTGCAAGGACCTT 57.143 42.857 0.00 0.00 39.30 3.50
2291 6186 3.477530 GTTCAACTAACTGCAAGGACCT 58.522 45.455 0.00 0.00 39.30 3.85
2292 6187 2.552743 GGTTCAACTAACTGCAAGGACC 59.447 50.000 0.00 0.00 39.30 4.46
2293 6188 3.211045 TGGTTCAACTAACTGCAAGGAC 58.789 45.455 0.00 0.00 39.30 3.85
2294 6189 3.569194 TGGTTCAACTAACTGCAAGGA 57.431 42.857 0.00 0.00 39.30 3.36
2295 6190 4.074970 AGATGGTTCAACTAACTGCAAGG 58.925 43.478 0.00 0.00 39.30 3.61
2296 6191 4.999950 AGAGATGGTTCAACTAACTGCAAG 59.000 41.667 0.00 0.00 38.23 4.01
2297 6192 4.756642 CAGAGATGGTTCAACTAACTGCAA 59.243 41.667 0.00 0.00 38.23 4.08
2298 6193 4.202357 ACAGAGATGGTTCAACTAACTGCA 60.202 41.667 0.00 0.00 38.23 4.41
2299 6194 4.319177 ACAGAGATGGTTCAACTAACTGC 58.681 43.478 0.00 0.00 38.23 4.40
2300 6195 6.146837 CAGAACAGAGATGGTTCAACTAACTG 59.853 42.308 7.87 0.00 45.45 3.16
2301 6196 6.042093 TCAGAACAGAGATGGTTCAACTAACT 59.958 38.462 7.87 0.00 45.45 2.24
2302 6197 6.223852 TCAGAACAGAGATGGTTCAACTAAC 58.776 40.000 7.87 0.00 45.45 2.34
2303 6198 6.419484 TCAGAACAGAGATGGTTCAACTAA 57.581 37.500 7.87 0.00 45.45 2.24
2304 6199 6.223852 GTTCAGAACAGAGATGGTTCAACTA 58.776 40.000 8.54 0.00 45.45 2.24
2305 6200 4.963318 TCAGAACAGAGATGGTTCAACT 57.037 40.909 7.87 0.00 45.45 3.16
2306 6201 4.214332 GGTTCAGAACAGAGATGGTTCAAC 59.786 45.833 15.36 4.57 45.45 3.18
2307 6202 4.141505 TGGTTCAGAACAGAGATGGTTCAA 60.142 41.667 15.36 0.00 45.45 2.69
2308 6203 3.390967 TGGTTCAGAACAGAGATGGTTCA 59.609 43.478 15.36 0.00 45.45 3.18
2309 6204 4.008074 TGGTTCAGAACAGAGATGGTTC 57.992 45.455 15.36 0.00 43.82 3.62
2310 6205 4.137543 GTTGGTTCAGAACAGAGATGGTT 58.862 43.478 15.36 0.00 0.00 3.67
2311 6206 3.136443 TGTTGGTTCAGAACAGAGATGGT 59.864 43.478 15.36 0.00 0.00 3.55
2312 6207 3.743521 TGTTGGTTCAGAACAGAGATGG 58.256 45.455 15.36 0.00 0.00 3.51
2313 6208 4.818546 AGTTGTTGGTTCAGAACAGAGATG 59.181 41.667 15.36 0.00 34.85 2.90
2314 6209 5.041191 AGTTGTTGGTTCAGAACAGAGAT 57.959 39.130 15.36 0.00 34.85 2.75
2315 6210 4.162320 AGAGTTGTTGGTTCAGAACAGAGA 59.838 41.667 15.36 0.00 34.85 3.10
2316 6211 4.446371 AGAGTTGTTGGTTCAGAACAGAG 58.554 43.478 15.36 0.00 34.85 3.35
2317 6212 4.487714 AGAGTTGTTGGTTCAGAACAGA 57.512 40.909 15.36 0.00 34.85 3.41
2318 6213 6.293626 CCAATAGAGTTGTTGGTTCAGAACAG 60.294 42.308 15.36 0.00 39.85 3.16
2319 6214 5.530915 CCAATAGAGTTGTTGGTTCAGAACA 59.469 40.000 15.36 0.00 39.85 3.18
2320 6215 5.562890 GCCAATAGAGTTGTTGGTTCAGAAC 60.563 44.000 4.52 4.52 44.79 3.01
2321 6216 4.518970 GCCAATAGAGTTGTTGGTTCAGAA 59.481 41.667 6.07 0.00 44.79 3.02
2322 6217 4.072131 GCCAATAGAGTTGTTGGTTCAGA 58.928 43.478 6.07 0.00 44.79 3.27
2323 6218 3.820467 TGCCAATAGAGTTGTTGGTTCAG 59.180 43.478 6.07 0.00 44.79 3.02
2324 6219 3.826524 TGCCAATAGAGTTGTTGGTTCA 58.173 40.909 6.07 0.00 44.79 3.18
2325 6220 4.458989 TCATGCCAATAGAGTTGTTGGTTC 59.541 41.667 6.07 0.00 44.79 3.62
2326 6221 4.406456 TCATGCCAATAGAGTTGTTGGTT 58.594 39.130 6.07 0.00 44.79 3.67
2327 6222 4.032960 TCATGCCAATAGAGTTGTTGGT 57.967 40.909 6.07 0.00 44.79 3.67
2328 6223 5.389859 TTTCATGCCAATAGAGTTGTTGG 57.610 39.130 0.00 0.00 45.51 3.77
2329 6224 7.092079 TGATTTTCATGCCAATAGAGTTGTTG 58.908 34.615 0.00 0.00 0.00 3.33
2330 6225 7.230849 TGATTTTCATGCCAATAGAGTTGTT 57.769 32.000 0.00 0.00 0.00 2.83
2331 6226 6.839124 TGATTTTCATGCCAATAGAGTTGT 57.161 33.333 0.00 0.00 0.00 3.32
2332 6227 7.274904 CACTTGATTTTCATGCCAATAGAGTTG 59.725 37.037 0.00 0.00 0.00 3.16
2333 6228 7.177216 TCACTTGATTTTCATGCCAATAGAGTT 59.823 33.333 0.00 0.00 0.00 3.01
2334 6229 6.660521 TCACTTGATTTTCATGCCAATAGAGT 59.339 34.615 0.00 0.00 0.00 3.24
2335 6230 7.092137 TCACTTGATTTTCATGCCAATAGAG 57.908 36.000 0.00 0.00 0.00 2.43
2336 6231 7.465353 TTCACTTGATTTTCATGCCAATAGA 57.535 32.000 0.00 0.00 0.00 1.98
2337 6232 7.977293 TCATTCACTTGATTTTCATGCCAATAG 59.023 33.333 0.00 0.00 0.00 1.73
2338 6233 7.838884 TCATTCACTTGATTTTCATGCCAATA 58.161 30.769 0.00 0.00 0.00 1.90
2339 6234 6.703319 TCATTCACTTGATTTTCATGCCAAT 58.297 32.000 0.00 0.00 0.00 3.16
2340 6235 6.099159 TCATTCACTTGATTTTCATGCCAA 57.901 33.333 0.00 0.00 0.00 4.52
2341 6236 5.725325 TCATTCACTTGATTTTCATGCCA 57.275 34.783 0.00 0.00 0.00 4.92
2342 6237 6.334989 TGATCATTCACTTGATTTTCATGCC 58.665 36.000 0.00 0.00 36.48 4.40
2343 6238 7.516785 GCATGATCATTCACTTGATTTTCATGC 60.517 37.037 18.19 18.19 44.96 4.06
2344 6239 7.491048 TGCATGATCATTCACTTGATTTTCATG 59.509 33.333 5.16 10.17 38.09 3.07
2345 6240 7.552459 TGCATGATCATTCACTTGATTTTCAT 58.448 30.769 5.16 0.00 36.48 2.57
2346 6241 6.926313 TGCATGATCATTCACTTGATTTTCA 58.074 32.000 5.16 0.00 36.48 2.69
2347 6242 7.329962 TGTTGCATGATCATTCACTTGATTTTC 59.670 33.333 7.59 0.00 36.48 2.29
2348 6243 7.156000 TGTTGCATGATCATTCACTTGATTTT 58.844 30.769 7.59 0.00 36.48 1.82
2349 6244 6.693466 TGTTGCATGATCATTCACTTGATTT 58.307 32.000 7.59 0.00 36.48 2.17
2350 6245 6.275494 TGTTGCATGATCATTCACTTGATT 57.725 33.333 7.59 0.00 36.48 2.57
2351 6246 5.907866 TGTTGCATGATCATTCACTTGAT 57.092 34.783 7.59 0.00 39.04 2.57
2352 6247 5.708877 TTGTTGCATGATCATTCACTTGA 57.291 34.783 7.59 0.00 33.85 3.02
2353 6248 6.961359 AATTGTTGCATGATCATTCACTTG 57.039 33.333 7.59 0.00 33.85 3.16
2354 6249 6.932400 ACAAATTGTTGCATGATCATTCACTT 59.068 30.769 7.59 3.02 38.39 3.16
2355 6250 6.460781 ACAAATTGTTGCATGATCATTCACT 58.539 32.000 7.59 0.00 38.39 3.41
2356 6251 6.715344 ACAAATTGTTGCATGATCATTCAC 57.285 33.333 7.59 4.84 38.39 3.18
2357 6252 7.731882 AAACAAATTGTTGCATGATCATTCA 57.268 28.000 12.50 4.39 40.14 2.57
2358 6253 8.071368 ACAAAACAAATTGTTGCATGATCATTC 58.929 29.630 12.50 1.09 40.14 2.67
2359 6254 7.932335 ACAAAACAAATTGTTGCATGATCATT 58.068 26.923 12.50 0.00 40.14 2.57
2360 6255 7.499321 ACAAAACAAATTGTTGCATGATCAT 57.501 28.000 12.50 1.18 40.14 2.45
2361 6256 6.922247 ACAAAACAAATTGTTGCATGATCA 57.078 29.167 12.50 0.00 40.14 2.92
2362 6257 8.710551 TGATACAAAACAAATTGTTGCATGATC 58.289 29.630 12.50 11.58 40.14 2.92
2363 6258 8.604640 TGATACAAAACAAATTGTTGCATGAT 57.395 26.923 12.50 3.12 40.14 2.45
2364 6259 8.604640 ATGATACAAAACAAATTGTTGCATGA 57.395 26.923 12.50 0.00 40.14 3.07
2365 6260 8.496751 TGATGATACAAAACAAATTGTTGCATG 58.503 29.630 12.50 13.48 40.14 4.06
2366 6261 8.604640 TGATGATACAAAACAAATTGTTGCAT 57.395 26.923 12.50 9.06 40.14 3.96
2367 6262 8.604640 ATGATGATACAAAACAAATTGTTGCA 57.395 26.923 12.50 5.01 40.14 4.08
2386 6281 9.793259 GGACCTTGAACCTTATATTTATGATGA 57.207 33.333 0.00 0.00 0.00 2.92
2387 6282 9.799106 AGGACCTTGAACCTTATATTTATGATG 57.201 33.333 0.00 0.00 31.95 3.07
2389 6284 9.627123 CAAGGACCTTGAACCTTATATTTATGA 57.373 33.333 27.43 0.00 43.42 2.15
2390 6285 9.408648 ACAAGGACCTTGAACCTTATATTTATG 57.591 33.333 35.69 8.60 43.42 1.90
2391 6286 9.408648 CACAAGGACCTTGAACCTTATATTTAT 57.591 33.333 35.69 9.50 43.42 1.40
2392 6287 7.832187 CCACAAGGACCTTGAACCTTATATTTA 59.168 37.037 35.69 0.00 43.42 1.40
2393 6288 6.663523 CCACAAGGACCTTGAACCTTATATTT 59.336 38.462 35.69 10.12 43.42 1.40
2394 6289 6.187682 CCACAAGGACCTTGAACCTTATATT 58.812 40.000 35.69 10.62 43.42 1.28
2395 6290 5.253096 ACCACAAGGACCTTGAACCTTATAT 59.747 40.000 35.69 11.32 43.42 0.86
2396 6291 4.600111 ACCACAAGGACCTTGAACCTTATA 59.400 41.667 35.69 0.00 43.42 0.98
2397 6292 3.397955 ACCACAAGGACCTTGAACCTTAT 59.602 43.478 35.69 12.74 43.42 1.73
2398 6293 2.781174 ACCACAAGGACCTTGAACCTTA 59.219 45.455 35.69 0.00 43.42 2.69
2399 6294 1.569072 ACCACAAGGACCTTGAACCTT 59.431 47.619 35.69 14.16 43.42 3.50
2400 6295 1.222567 ACCACAAGGACCTTGAACCT 58.777 50.000 35.69 14.53 43.42 3.50
2401 6296 2.067365 AACCACAAGGACCTTGAACC 57.933 50.000 35.69 0.00 43.42 3.62
2402 6297 5.784578 AATTAACCACAAGGACCTTGAAC 57.215 39.130 35.69 0.00 43.42 3.18
2403 6298 6.607019 ACTAATTAACCACAAGGACCTTGAA 58.393 36.000 35.69 21.27 43.42 2.69
2404 6299 6.043938 AGACTAATTAACCACAAGGACCTTGA 59.956 38.462 35.69 16.17 43.42 3.02
2405 6300 6.238648 AGACTAATTAACCACAAGGACCTTG 58.761 40.000 29.13 29.13 45.85 3.61
2406 6301 6.449830 AGACTAATTAACCACAAGGACCTT 57.550 37.500 0.00 0.00 38.69 3.50
2407 6302 6.449830 AAGACTAATTAACCACAAGGACCT 57.550 37.500 0.00 0.00 38.69 3.85
2408 6303 8.044908 TCATAAGACTAATTAACCACAAGGACC 58.955 37.037 0.00 0.00 38.69 4.46
2409 6304 9.614792 ATCATAAGACTAATTAACCACAAGGAC 57.385 33.333 0.00 0.00 38.69 3.85
2456 6351 4.175962 TGGGACAGAGGGAGTATCTTTTT 58.824 43.478 0.00 0.00 33.73 1.94
2457 6352 3.803340 TGGGACAGAGGGAGTATCTTTT 58.197 45.455 0.00 0.00 33.73 2.27
2458 6353 3.491766 TGGGACAGAGGGAGTATCTTT 57.508 47.619 0.00 0.00 33.73 2.52
2459 6354 3.491766 TTGGGACAGAGGGAGTATCTT 57.508 47.619 0.00 0.00 42.39 2.40
2460 6355 3.491766 TTTGGGACAGAGGGAGTATCT 57.508 47.619 0.00 0.00 42.39 1.98
2461 6356 4.779993 ATTTTGGGACAGAGGGAGTATC 57.220 45.455 0.00 0.00 42.39 2.24
2462 6357 7.794683 TCTTATATTTTGGGACAGAGGGAGTAT 59.205 37.037 0.00 0.00 42.39 2.12
2463 6358 7.136885 TCTTATATTTTGGGACAGAGGGAGTA 58.863 38.462 0.00 0.00 42.39 2.59
2464 6359 5.970640 TCTTATATTTTGGGACAGAGGGAGT 59.029 40.000 0.00 0.00 42.39 3.85
2465 6360 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
2466 6361 6.901615 TTCTTATATTTTGGGACAGAGGGA 57.098 37.500 0.00 0.00 42.39 4.20
2467 6362 7.062957 ACATTCTTATATTTTGGGACAGAGGG 58.937 38.462 0.00 0.00 42.39 4.30
2468 6363 8.525290 AACATTCTTATATTTTGGGACAGAGG 57.475 34.615 0.00 0.00 42.39 3.69
2469 6364 9.401058 AGAACATTCTTATATTTTGGGACAGAG 57.599 33.333 0.00 0.00 34.29 3.35
2470 6365 9.396022 GAGAACATTCTTATATTTTGGGACAGA 57.604 33.333 0.00 0.00 37.36 3.41
2471 6366 9.177608 TGAGAACATTCTTATATTTTGGGACAG 57.822 33.333 0.00 0.00 37.36 3.51
2472 6367 9.527157 TTGAGAACATTCTTATATTTTGGGACA 57.473 29.630 0.00 0.00 37.73 4.02
2473 6368 9.788960 GTTGAGAACATTCTTATATTTTGGGAC 57.211 33.333 0.00 0.00 37.73 4.46
2474 6369 9.527157 TGTTGAGAACATTCTTATATTTTGGGA 57.473 29.630 0.00 0.00 37.73 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.