Multiple sequence alignment - TraesCS2B01G071700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G071700 chr2B 100.000 5485 0 0 1 5485 38076116 38081600 0.000000e+00 10129
1 TraesCS2B01G071700 chr2B 91.416 2062 164 10 1339 3393 98740455 98738400 0.000000e+00 2815
2 TraesCS2B01G071700 chr2B 86.934 1921 239 9 1475 3388 744133745 744135660 0.000000e+00 2146
3 TraesCS2B01G071700 chr2B 90.307 423 30 4 3 414 39088630 39089052 1.340000e-150 544
4 TraesCS2B01G071700 chr2B 79.278 748 136 15 1321 2055 7588123 7588864 6.340000e-139 505
5 TraesCS2B01G071700 chr2B 88.862 413 34 6 3 414 38419272 38419673 1.060000e-136 497
6 TraesCS2B01G071700 chr2B 99.333 150 1 0 5336 5485 121925164 121925015 7.000000e-69 272
7 TraesCS2B01G071700 chr2B 92.222 180 13 1 4017 4196 98738408 98738230 2.540000e-63 254
8 TraesCS2B01G071700 chr2B 88.950 181 20 0 4017 4197 147461435 147461255 1.990000e-54 224
9 TraesCS2B01G071700 chr7D 89.995 2089 187 6 1323 3393 448711150 448713234 0.000000e+00 2680
10 TraesCS2B01G071700 chr7D 93.918 970 53 3 4208 5176 207198647 207199611 0.000000e+00 1459
11 TraesCS2B01G071700 chr7D 91.685 914 67 5 418 1324 18554226 18553315 0.000000e+00 1258
12 TraesCS2B01G071700 chr7D 90.710 183 17 0 4017 4199 448713226 448713408 1.530000e-60 244
13 TraesCS2B01G071700 chr1D 88.787 2078 223 6 1322 3393 457823092 457825165 0.000000e+00 2538
14 TraesCS2B01G071700 chr1D 94.021 970 53 2 4208 5176 426391014 426390049 0.000000e+00 1465
15 TraesCS2B01G071700 chr1D 93.814 970 55 2 4208 5176 415504809 415503844 0.000000e+00 1454
16 TraesCS2B01G071700 chr1D 93.711 970 56 2 4208 5176 250224264 250225229 0.000000e+00 1448
17 TraesCS2B01G071700 chr1D 88.525 183 21 0 4017 4199 457825157 457825339 7.150000e-54 222
18 TraesCS2B01G071700 chrUn 87.839 2064 237 10 1339 3393 27916451 27918509 0.000000e+00 2409
19 TraesCS2B01G071700 chrUn 95.994 624 25 0 3394 4017 7451109 7451732 0.000000e+00 1014
20 TraesCS2B01G071700 chrUn 95.367 626 28 1 3394 4018 50778793 50779418 0.000000e+00 994
21 TraesCS2B01G071700 chr3B 87.152 2086 250 14 1317 3393 82822037 82819961 0.000000e+00 2351
22 TraesCS2B01G071700 chr3B 95.680 625 26 1 3393 4017 479904514 479905137 0.000000e+00 1003
23 TraesCS2B01G071700 chr3B 94.603 630 32 2 3394 4022 16702713 16702085 0.000000e+00 974
24 TraesCS2B01G071700 chr3B 96.933 163 5 0 5323 5485 511465814 511465976 1.950000e-69 274
25 TraesCS2B01G071700 chr3B 96.933 163 5 0 5323 5485 511466524 511466686 1.950000e-69 274
26 TraesCS2B01G071700 chr3B 96.933 163 5 0 5323 5485 511467956 511468118 1.950000e-69 274
27 TraesCS2B01G071700 chr3B 95.706 163 7 0 5323 5485 511464383 511464545 4.210000e-66 263
28 TraesCS2B01G071700 chr3B 89.071 183 20 0 4017 4199 578752185 578752003 1.540000e-55 228
29 TraesCS2B01G071700 chr3D 87.318 2066 240 16 1339 3393 344841701 344843755 0.000000e+00 2344
30 TraesCS2B01G071700 chr3D 86.311 2082 266 12 1320 3392 462076331 462078402 0.000000e+00 2248
31 TraesCS2B01G071700 chr3D 94.021 970 52 3 4208 5176 569884998 569885962 0.000000e+00 1465
32 TraesCS2B01G071700 chr6B 91.011 1691 141 5 1341 3021 100890927 100892616 0.000000e+00 2270
33 TraesCS2B01G071700 chr6B 96.875 160 3 2 5326 5485 711228263 711228106 3.260000e-67 267
34 TraesCS2B01G071700 chr4D 93.918 970 54 2 4208 5176 481887928 481888893 0.000000e+00 1459
35 TraesCS2B01G071700 chr4D 93.711 970 56 2 4208 5176 502107921 502106956 0.000000e+00 1448
36 TraesCS2B01G071700 chr5D 93.814 970 55 2 4208 5176 495795332 495794367 0.000000e+00 1454
37 TraesCS2B01G071700 chr5D 91.450 924 68 7 406 1324 59767203 59766286 0.000000e+00 1258
38 TraesCS2B01G071700 chr2D 93.711 970 54 4 4208 5176 619798030 619797067 0.000000e+00 1447
39 TraesCS2B01G071700 chr2D 92.758 939 51 10 393 1321 236134817 236135748 0.000000e+00 1341
40 TraesCS2B01G071700 chr2D 92.206 911 67 2 418 1325 619798922 619798013 0.000000e+00 1286
41 TraesCS2B01G071700 chr2D 91.612 918 68 7 410 1321 498273315 498274229 0.000000e+00 1260
42 TraesCS2B01G071700 chr2D 91.630 908 69 5 418 1321 350066017 350066921 0.000000e+00 1249
43 TraesCS2B01G071700 chr2D 95.719 327 13 1 3 328 22818189 22817863 4.870000e-145 525
44 TraesCS2B01G071700 chr6D 91.667 924 67 8 406 1324 41924615 41923697 0.000000e+00 1271
45 TraesCS2B01G071700 chr6D 91.648 910 65 7 418 1324 325418863 325417962 0.000000e+00 1249
46 TraesCS2B01G071700 chr6D 91.485 916 64 7 418 1324 449138055 449137145 0.000000e+00 1247
47 TraesCS2B01G071700 chr1B 95.680 625 26 1 3394 4017 271742089 271741465 0.000000e+00 1003
48 TraesCS2B01G071700 chr5B 94.961 635 30 2 3385 4018 628722677 628723310 0.000000e+00 994
49 TraesCS2B01G071700 chr5B 94.475 181 10 0 4017 4197 19682913 19682733 4.180000e-71 279
50 TraesCS2B01G071700 chr5B 94.737 171 5 4 5318 5485 31425806 31425975 4.210000e-66 263
51 TraesCS2B01G071700 chr5B 90.741 162 15 0 4038 4199 345045587 345045426 3.330000e-52 217
52 TraesCS2B01G071700 chr3A 95.353 624 28 1 3394 4017 697650331 697650953 0.000000e+00 990
53 TraesCS2B01G071700 chr6A 95.200 625 28 2 3394 4017 307365958 307365335 0.000000e+00 987
54 TraesCS2B01G071700 chr7B 94.896 627 30 2 3392 4017 601576068 601576693 0.000000e+00 979
55 TraesCS2B01G071700 chr2A 89.448 417 30 4 3 414 24409771 24409364 1.050000e-141 514
56 TraesCS2B01G071700 chr4B 96.341 164 3 3 5325 5485 435915992 435916155 3.260000e-67 267
57 TraesCS2B01G071700 chr4B 96.296 162 6 0 5324 5485 553888682 553888521 3.260000e-67 267
58 TraesCS2B01G071700 chr5A 89.143 175 19 0 4017 4191 706681755 706681929 9.250000e-53 219
59 TraesCS2B01G071700 chr4A 89.143 175 19 0 4017 4191 18061204 18061378 9.250000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G071700 chr2B 38076116 38081600 5484 False 10129.00 10129 100.00000 1 5485 1 chr2B.!!$F2 5484
1 TraesCS2B01G071700 chr2B 744133745 744135660 1915 False 2146.00 2146 86.93400 1475 3388 1 chr2B.!!$F5 1913
2 TraesCS2B01G071700 chr2B 98738230 98740455 2225 True 1534.50 2815 91.81900 1339 4196 2 chr2B.!!$R3 2857
3 TraesCS2B01G071700 chr2B 7588123 7588864 741 False 505.00 505 79.27800 1321 2055 1 chr2B.!!$F1 734
4 TraesCS2B01G071700 chr7D 448711150 448713408 2258 False 1462.00 2680 90.35250 1323 4199 2 chr7D.!!$F2 2876
5 TraesCS2B01G071700 chr7D 207198647 207199611 964 False 1459.00 1459 93.91800 4208 5176 1 chr7D.!!$F1 968
6 TraesCS2B01G071700 chr7D 18553315 18554226 911 True 1258.00 1258 91.68500 418 1324 1 chr7D.!!$R1 906
7 TraesCS2B01G071700 chr1D 426390049 426391014 965 True 1465.00 1465 94.02100 4208 5176 1 chr1D.!!$R2 968
8 TraesCS2B01G071700 chr1D 415503844 415504809 965 True 1454.00 1454 93.81400 4208 5176 1 chr1D.!!$R1 968
9 TraesCS2B01G071700 chr1D 250224264 250225229 965 False 1448.00 1448 93.71100 4208 5176 1 chr1D.!!$F1 968
10 TraesCS2B01G071700 chr1D 457823092 457825339 2247 False 1380.00 2538 88.65600 1322 4199 2 chr1D.!!$F2 2877
11 TraesCS2B01G071700 chrUn 27916451 27918509 2058 False 2409.00 2409 87.83900 1339 3393 1 chrUn.!!$F2 2054
12 TraesCS2B01G071700 chrUn 7451109 7451732 623 False 1014.00 1014 95.99400 3394 4017 1 chrUn.!!$F1 623
13 TraesCS2B01G071700 chrUn 50778793 50779418 625 False 994.00 994 95.36700 3394 4018 1 chrUn.!!$F3 624
14 TraesCS2B01G071700 chr3B 82819961 82822037 2076 True 2351.00 2351 87.15200 1317 3393 1 chr3B.!!$R2 2076
15 TraesCS2B01G071700 chr3B 479904514 479905137 623 False 1003.00 1003 95.68000 3393 4017 1 chr3B.!!$F1 624
16 TraesCS2B01G071700 chr3B 16702085 16702713 628 True 974.00 974 94.60300 3394 4022 1 chr3B.!!$R1 628
17 TraesCS2B01G071700 chr3B 511464383 511468118 3735 False 271.25 274 96.62625 5323 5485 4 chr3B.!!$F2 162
18 TraesCS2B01G071700 chr3D 344841701 344843755 2054 False 2344.00 2344 87.31800 1339 3393 1 chr3D.!!$F1 2054
19 TraesCS2B01G071700 chr3D 462076331 462078402 2071 False 2248.00 2248 86.31100 1320 3392 1 chr3D.!!$F2 2072
20 TraesCS2B01G071700 chr3D 569884998 569885962 964 False 1465.00 1465 94.02100 4208 5176 1 chr3D.!!$F3 968
21 TraesCS2B01G071700 chr6B 100890927 100892616 1689 False 2270.00 2270 91.01100 1341 3021 1 chr6B.!!$F1 1680
22 TraesCS2B01G071700 chr4D 481887928 481888893 965 False 1459.00 1459 93.91800 4208 5176 1 chr4D.!!$F1 968
23 TraesCS2B01G071700 chr4D 502106956 502107921 965 True 1448.00 1448 93.71100 4208 5176 1 chr4D.!!$R1 968
24 TraesCS2B01G071700 chr5D 495794367 495795332 965 True 1454.00 1454 93.81400 4208 5176 1 chr5D.!!$R2 968
25 TraesCS2B01G071700 chr5D 59766286 59767203 917 True 1258.00 1258 91.45000 406 1324 1 chr5D.!!$R1 918
26 TraesCS2B01G071700 chr2D 619797067 619798922 1855 True 1366.50 1447 92.95850 418 5176 2 chr2D.!!$R2 4758
27 TraesCS2B01G071700 chr2D 236134817 236135748 931 False 1341.00 1341 92.75800 393 1321 1 chr2D.!!$F1 928
28 TraesCS2B01G071700 chr2D 498273315 498274229 914 False 1260.00 1260 91.61200 410 1321 1 chr2D.!!$F3 911
29 TraesCS2B01G071700 chr2D 350066017 350066921 904 False 1249.00 1249 91.63000 418 1321 1 chr2D.!!$F2 903
30 TraesCS2B01G071700 chr6D 41923697 41924615 918 True 1271.00 1271 91.66700 406 1324 1 chr6D.!!$R1 918
31 TraesCS2B01G071700 chr6D 325417962 325418863 901 True 1249.00 1249 91.64800 418 1324 1 chr6D.!!$R2 906
32 TraesCS2B01G071700 chr6D 449137145 449138055 910 True 1247.00 1247 91.48500 418 1324 1 chr6D.!!$R3 906
33 TraesCS2B01G071700 chr1B 271741465 271742089 624 True 1003.00 1003 95.68000 3394 4017 1 chr1B.!!$R1 623
34 TraesCS2B01G071700 chr5B 628722677 628723310 633 False 994.00 994 94.96100 3385 4018 1 chr5B.!!$F2 633
35 TraesCS2B01G071700 chr3A 697650331 697650953 622 False 990.00 990 95.35300 3394 4017 1 chr3A.!!$F1 623
36 TraesCS2B01G071700 chr6A 307365335 307365958 623 True 987.00 987 95.20000 3394 4017 1 chr6A.!!$R1 623
37 TraesCS2B01G071700 chr7B 601576068 601576693 625 False 979.00 979 94.89600 3392 4017 1 chr7B.!!$F1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.038166 ACTGGTGAATGGTGGCGATT 59.962 50.0 0.00 0.0 0.00 3.34 F
282 283 0.255318 AAGAAGATGCTGCCCTCTGG 59.745 55.0 0.00 0.0 0.00 3.86 F
1289 1308 0.305922 GATAGCATCAACACCAGCGC 59.694 55.0 0.00 0.0 0.00 5.92 F
2128 2183 0.462047 GTGGAGGGCAATACACTCGG 60.462 60.0 0.00 0.0 32.11 4.63 F
3088 3148 0.606401 ACGTCCATTGGCCACAAGAG 60.606 55.0 3.88 0.0 40.49 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2036 0.323957 GAACTAGCGGTCCTTTGGGT 59.676 55.000 0.00 0.0 0.00 4.51 R
2190 2245 1.375523 CGTGGCCTTAGCGGACTTT 60.376 57.895 3.32 0.0 43.44 2.66 R
2812 2872 0.598562 AGTGACACACGTCTGCTAGG 59.401 55.000 8.59 0.0 43.06 3.02 R
4020 4084 0.307760 AGAGCAAAAACCTTCGCACG 59.692 50.000 0.00 0.0 0.00 5.34 R
4560 4624 0.253160 TGCTTCCTCCCCCTGTATGT 60.253 55.000 0.00 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.470645 AAGGCGTCTTGTACTCAAACT 57.529 42.857 0.00 0.00 32.87 2.66
21 22 2.755650 AGGCGTCTTGTACTCAAACTG 58.244 47.619 0.00 0.00 32.87 3.16
22 23 2.102588 AGGCGTCTTGTACTCAAACTGT 59.897 45.455 0.00 0.00 32.87 3.55
23 24 3.319972 AGGCGTCTTGTACTCAAACTGTA 59.680 43.478 0.00 0.00 32.87 2.74
25 26 4.689345 GGCGTCTTGTACTCAAACTGTAAT 59.311 41.667 0.00 0.00 32.87 1.89
27 28 6.034683 GGCGTCTTGTACTCAAACTGTAATAG 59.965 42.308 0.00 0.00 32.87 1.73
28 29 6.034683 GCGTCTTGTACTCAAACTGTAATAGG 59.965 42.308 0.00 0.00 32.87 2.57
30 31 8.239314 CGTCTTGTACTCAAACTGTAATAGGTA 58.761 37.037 0.00 0.00 32.87 3.08
31 32 9.918630 GTCTTGTACTCAAACTGTAATAGGTAA 57.081 33.333 0.00 0.00 32.87 2.85
40 41 7.177216 TCAAACTGTAATAGGTAAAGAGACGGA 59.823 37.037 0.00 0.00 0.00 4.69
41 42 6.696441 ACTGTAATAGGTAAAGAGACGGAG 57.304 41.667 0.00 0.00 0.00 4.63
42 43 5.593502 ACTGTAATAGGTAAAGAGACGGAGG 59.406 44.000 0.00 0.00 0.00 4.30
43 44 4.891756 TGTAATAGGTAAAGAGACGGAGGG 59.108 45.833 0.00 0.00 0.00 4.30
44 45 1.772836 TAGGTAAAGAGACGGAGGGC 58.227 55.000 0.00 0.00 0.00 5.19
45 46 0.041386 AGGTAAAGAGACGGAGGGCT 59.959 55.000 0.00 0.00 0.00 5.19
46 47 1.287146 AGGTAAAGAGACGGAGGGCTA 59.713 52.381 0.00 0.00 0.00 3.93
47 48 1.682323 GGTAAAGAGACGGAGGGCTAG 59.318 57.143 0.00 0.00 0.00 3.42
48 49 1.067364 GTAAAGAGACGGAGGGCTAGC 59.933 57.143 6.04 6.04 0.00 3.42
50 51 0.614979 AAGAGACGGAGGGCTAGCAA 60.615 55.000 18.24 0.00 0.00 3.91
51 52 0.614979 AGAGACGGAGGGCTAGCAAA 60.615 55.000 18.24 0.00 0.00 3.68
54 55 1.413077 AGACGGAGGGCTAGCAAATAC 59.587 52.381 18.24 0.82 0.00 1.89
56 57 1.139058 ACGGAGGGCTAGCAAATACTG 59.861 52.381 18.24 9.97 0.00 2.74
57 58 1.541233 CGGAGGGCTAGCAAATACTGG 60.541 57.143 18.24 0.00 0.00 4.00
59 60 2.565841 GAGGGCTAGCAAATACTGGTG 58.434 52.381 18.24 0.00 36.95 4.17
61 62 2.576191 AGGGCTAGCAAATACTGGTGAA 59.424 45.455 18.24 0.00 36.95 3.18
63 64 3.316308 GGGCTAGCAAATACTGGTGAATG 59.684 47.826 18.24 0.00 36.95 2.67
64 65 3.316308 GGCTAGCAAATACTGGTGAATGG 59.684 47.826 18.24 0.00 36.95 3.16
65 66 3.947834 GCTAGCAAATACTGGTGAATGGT 59.052 43.478 10.63 0.00 36.95 3.55
66 67 4.201950 GCTAGCAAATACTGGTGAATGGTG 60.202 45.833 10.63 0.00 36.95 4.17
67 68 3.091545 AGCAAATACTGGTGAATGGTGG 58.908 45.455 0.00 0.00 33.42 4.61
68 69 2.417243 GCAAATACTGGTGAATGGTGGC 60.417 50.000 0.00 0.00 0.00 5.01
69 70 1.750193 AATACTGGTGAATGGTGGCG 58.250 50.000 0.00 0.00 0.00 5.69
72 73 0.038166 ACTGGTGAATGGTGGCGATT 59.962 50.000 0.00 0.00 0.00 3.34
73 74 1.176527 CTGGTGAATGGTGGCGATTT 58.823 50.000 0.00 0.00 0.00 2.17
74 75 2.290641 ACTGGTGAATGGTGGCGATTTA 60.291 45.455 0.00 0.00 0.00 1.40
75 76 2.088423 TGGTGAATGGTGGCGATTTAC 58.912 47.619 0.00 0.00 0.00 2.01
77 78 2.159435 GGTGAATGGTGGCGATTTACAC 60.159 50.000 0.00 0.00 36.89 2.90
80 81 3.057876 TGAATGGTGGCGATTTACACAAC 60.058 43.478 0.00 0.00 39.31 3.32
81 82 1.968704 TGGTGGCGATTTACACAACA 58.031 45.000 0.00 0.00 39.31 3.33
82 83 2.509569 TGGTGGCGATTTACACAACAT 58.490 42.857 0.00 0.00 39.31 2.71
83 84 3.676093 TGGTGGCGATTTACACAACATA 58.324 40.909 0.00 0.00 39.31 2.29
84 85 4.072839 TGGTGGCGATTTACACAACATAA 58.927 39.130 0.00 0.00 39.31 1.90
85 86 4.519350 TGGTGGCGATTTACACAACATAAA 59.481 37.500 0.00 0.00 39.31 1.40
86 87 5.184096 TGGTGGCGATTTACACAACATAAAT 59.816 36.000 0.00 0.00 39.31 1.40
87 88 6.374613 TGGTGGCGATTTACACAACATAAATA 59.625 34.615 0.00 0.00 39.31 1.40
89 90 7.918562 GGTGGCGATTTACACAACATAAATATT 59.081 33.333 0.00 0.00 39.31 1.28
91 92 9.295214 TGGCGATTTACACAACATAAATATTTG 57.705 29.630 11.05 0.00 33.39 2.32
92 93 9.296400 GGCGATTTACACAACATAAATATTTGT 57.704 29.630 11.05 0.84 33.39 2.83
119 120 9.971922 AAACTATGCATTAATAATCTGCTTTCC 57.028 29.630 3.54 0.00 36.84 3.13
122 123 7.592885 ATGCATTAATAATCTGCTTTCCTGT 57.407 32.000 0.00 0.00 36.84 4.00
124 125 7.483307 TGCATTAATAATCTGCTTTCCTGTTC 58.517 34.615 1.08 0.00 36.84 3.18
125 126 7.340232 TGCATTAATAATCTGCTTTCCTGTTCT 59.660 33.333 1.08 0.00 36.84 3.01
126 127 7.646922 GCATTAATAATCTGCTTTCCTGTTCTG 59.353 37.037 0.00 0.00 33.15 3.02
128 129 8.635765 TTAATAATCTGCTTTCCTGTTCTGTT 57.364 30.769 0.00 0.00 0.00 3.16
129 130 4.843220 AATCTGCTTTCCTGTTCTGTTG 57.157 40.909 0.00 0.00 0.00 3.33
130 131 3.281727 TCTGCTTTCCTGTTCTGTTGT 57.718 42.857 0.00 0.00 0.00 3.32
131 132 4.415881 TCTGCTTTCCTGTTCTGTTGTA 57.584 40.909 0.00 0.00 0.00 2.41
132 133 4.776349 TCTGCTTTCCTGTTCTGTTGTAA 58.224 39.130 0.00 0.00 0.00 2.41
152 153 8.798153 GTTGTAAACTATGCTATCATTTGTTGC 58.202 33.333 0.00 0.00 45.32 4.17
153 154 8.279970 TGTAAACTATGCTATCATTTGTTGCT 57.720 30.769 0.00 0.00 32.54 3.91
155 156 9.573133 GTAAACTATGCTATCATTTGTTGCTTT 57.427 29.630 0.00 0.00 32.54 3.51
159 160 9.740239 ACTATGCTATCATTTGTTGCTTTATTG 57.260 29.630 0.00 0.00 34.22 1.90
160 161 9.955208 CTATGCTATCATTTGTTGCTTTATTGA 57.045 29.630 0.00 0.00 34.22 2.57
162 163 8.692110 TGCTATCATTTGTTGCTTTATTGAAG 57.308 30.769 0.00 0.00 38.45 3.02
176 177 5.618056 TTATTGAAGCTTTGTCTCAGCAG 57.382 39.130 0.00 0.00 39.99 4.24
177 178 2.916702 TGAAGCTTTGTCTCAGCAGA 57.083 45.000 0.00 0.00 39.99 4.26
178 179 3.413846 TGAAGCTTTGTCTCAGCAGAT 57.586 42.857 0.00 0.00 39.99 2.90
179 180 4.541973 TGAAGCTTTGTCTCAGCAGATA 57.458 40.909 0.00 0.00 39.99 1.98
180 181 5.095145 TGAAGCTTTGTCTCAGCAGATAT 57.905 39.130 0.00 0.00 39.99 1.63
181 182 6.225981 TGAAGCTTTGTCTCAGCAGATATA 57.774 37.500 0.00 0.00 39.99 0.86
182 183 6.824553 TGAAGCTTTGTCTCAGCAGATATAT 58.175 36.000 0.00 0.00 39.99 0.86
183 184 7.278135 TGAAGCTTTGTCTCAGCAGATATATT 58.722 34.615 0.00 0.00 39.99 1.28
185 186 7.727331 AGCTTTGTCTCAGCAGATATATTTC 57.273 36.000 0.00 0.00 39.99 2.17
186 187 6.709846 AGCTTTGTCTCAGCAGATATATTTCC 59.290 38.462 0.00 0.00 39.99 3.13
188 189 7.307870 GCTTTGTCTCAGCAGATATATTTCCAG 60.308 40.741 0.00 0.00 37.22 3.86
189 190 6.737720 TGTCTCAGCAGATATATTTCCAGT 57.262 37.500 0.00 0.00 0.00 4.00
190 191 7.129457 TGTCTCAGCAGATATATTTCCAGTT 57.871 36.000 0.00 0.00 0.00 3.16
191 192 7.568349 TGTCTCAGCAGATATATTTCCAGTTT 58.432 34.615 0.00 0.00 0.00 2.66
192 193 7.496920 TGTCTCAGCAGATATATTTCCAGTTTG 59.503 37.037 0.00 0.00 0.00 2.93
193 194 7.497249 GTCTCAGCAGATATATTTCCAGTTTGT 59.503 37.037 0.00 0.00 0.00 2.83
194 195 8.049117 TCTCAGCAGATATATTTCCAGTTTGTT 58.951 33.333 0.00 0.00 0.00 2.83
195 196 8.213518 TCAGCAGATATATTTCCAGTTTGTTC 57.786 34.615 0.00 0.00 0.00 3.18
196 197 8.049117 TCAGCAGATATATTTCCAGTTTGTTCT 58.951 33.333 0.00 0.00 0.00 3.01
197 198 8.680903 CAGCAGATATATTTCCAGTTTGTTCTT 58.319 33.333 0.00 0.00 0.00 2.52
198 199 8.680903 AGCAGATATATTTCCAGTTTGTTCTTG 58.319 33.333 0.00 0.00 0.00 3.02
200 201 9.778993 CAGATATATTTCCAGTTTGTTCTTGTG 57.221 33.333 0.00 0.00 0.00 3.33
205 206 7.581213 ATTTCCAGTTTGTTCTTGTGTATGA 57.419 32.000 0.00 0.00 0.00 2.15
206 207 7.397892 TTTCCAGTTTGTTCTTGTGTATGAA 57.602 32.000 0.00 0.00 0.00 2.57
207 208 7.581213 TTCCAGTTTGTTCTTGTGTATGAAT 57.419 32.000 0.00 0.00 0.00 2.57
208 209 6.969366 TCCAGTTTGTTCTTGTGTATGAATG 58.031 36.000 0.00 0.00 0.00 2.67
209 210 6.545666 TCCAGTTTGTTCTTGTGTATGAATGT 59.454 34.615 0.00 0.00 0.00 2.71
211 212 7.416817 CAGTTTGTTCTTGTGTATGAATGTGA 58.583 34.615 0.00 0.00 0.00 3.58
212 213 7.588854 CAGTTTGTTCTTGTGTATGAATGTGAG 59.411 37.037 0.00 0.00 0.00 3.51
213 214 7.283127 AGTTTGTTCTTGTGTATGAATGTGAGT 59.717 33.333 0.00 0.00 0.00 3.41
214 215 8.556194 GTTTGTTCTTGTGTATGAATGTGAGTA 58.444 33.333 0.00 0.00 0.00 2.59
217 218 6.968131 TCTTGTGTATGAATGTGAGTAAGC 57.032 37.500 0.00 0.00 0.00 3.09
219 220 5.420725 TGTGTATGAATGTGAGTAAGCCT 57.579 39.130 0.00 0.00 0.00 4.58
220 221 5.178061 TGTGTATGAATGTGAGTAAGCCTG 58.822 41.667 0.00 0.00 0.00 4.85
222 223 5.643777 GTGTATGAATGTGAGTAAGCCTGTT 59.356 40.000 0.00 0.00 0.00 3.16
223 224 5.643348 TGTATGAATGTGAGTAAGCCTGTTG 59.357 40.000 0.00 0.00 0.00 3.33
224 225 4.350368 TGAATGTGAGTAAGCCTGTTGA 57.650 40.909 0.00 0.00 0.00 3.18
225 226 4.713553 TGAATGTGAGTAAGCCTGTTGAA 58.286 39.130 0.00 0.00 0.00 2.69
226 227 5.129634 TGAATGTGAGTAAGCCTGTTGAAA 58.870 37.500 0.00 0.00 0.00 2.69
227 228 5.592282 TGAATGTGAGTAAGCCTGTTGAAAA 59.408 36.000 0.00 0.00 0.00 2.29
228 229 6.265196 TGAATGTGAGTAAGCCTGTTGAAAAT 59.735 34.615 0.00 0.00 0.00 1.82
229 230 7.446931 TGAATGTGAGTAAGCCTGTTGAAAATA 59.553 33.333 0.00 0.00 0.00 1.40
231 232 7.144722 TGTGAGTAAGCCTGTTGAAAATATG 57.855 36.000 0.00 0.00 0.00 1.78
232 233 6.939730 TGTGAGTAAGCCTGTTGAAAATATGA 59.060 34.615 0.00 0.00 0.00 2.15
234 235 7.750903 GTGAGTAAGCCTGTTGAAAATATGAAC 59.249 37.037 0.00 0.00 0.00 3.18
236 237 8.409358 AGTAAGCCTGTTGAAAATATGAACTT 57.591 30.769 0.00 0.00 0.00 2.66
237 238 8.299570 AGTAAGCCTGTTGAAAATATGAACTTG 58.700 33.333 0.00 0.00 0.00 3.16
238 239 6.899393 AGCCTGTTGAAAATATGAACTTGA 57.101 33.333 0.00 0.00 0.00 3.02
239 240 7.288810 AGCCTGTTGAAAATATGAACTTGAA 57.711 32.000 0.00 0.00 0.00 2.69
240 241 7.725251 AGCCTGTTGAAAATATGAACTTGAAA 58.275 30.769 0.00 0.00 0.00 2.69
241 242 8.203485 AGCCTGTTGAAAATATGAACTTGAAAA 58.797 29.630 0.00 0.00 0.00 2.29
257 258 2.172505 TGAAAAGAGACTGGGTGCTGAA 59.827 45.455 0.00 0.00 0.00 3.02
258 259 2.557920 AAAGAGACTGGGTGCTGAAG 57.442 50.000 0.00 0.00 0.00 3.02
260 261 1.265236 AGAGACTGGGTGCTGAAGAG 58.735 55.000 0.00 0.00 0.00 2.85
262 263 0.472734 AGACTGGGTGCTGAAGAGGT 60.473 55.000 0.00 0.00 0.00 3.85
263 264 1.203187 AGACTGGGTGCTGAAGAGGTA 60.203 52.381 0.00 0.00 0.00 3.08
264 265 1.623811 GACTGGGTGCTGAAGAGGTAA 59.376 52.381 0.00 0.00 0.00 2.85
265 266 1.625818 ACTGGGTGCTGAAGAGGTAAG 59.374 52.381 0.00 0.00 0.00 2.34
266 267 1.902508 CTGGGTGCTGAAGAGGTAAGA 59.097 52.381 0.00 0.00 0.00 2.10
268 269 2.303022 TGGGTGCTGAAGAGGTAAGAAG 59.697 50.000 0.00 0.00 0.00 2.85
269 270 2.567615 GGGTGCTGAAGAGGTAAGAAGA 59.432 50.000 0.00 0.00 0.00 2.87
270 271 3.198853 GGGTGCTGAAGAGGTAAGAAGAT 59.801 47.826 0.00 0.00 0.00 2.40
271 272 4.187694 GGTGCTGAAGAGGTAAGAAGATG 58.812 47.826 0.00 0.00 0.00 2.90
273 274 3.517100 TGCTGAAGAGGTAAGAAGATGCT 59.483 43.478 0.00 0.00 0.00 3.79
274 275 3.870419 GCTGAAGAGGTAAGAAGATGCTG 59.130 47.826 0.00 0.00 0.00 4.41
275 276 3.866651 TGAAGAGGTAAGAAGATGCTGC 58.133 45.455 0.00 0.00 0.00 5.25
276 277 2.998316 AGAGGTAAGAAGATGCTGCC 57.002 50.000 0.00 0.00 0.00 4.85
278 279 1.488393 GAGGTAAGAAGATGCTGCCCT 59.512 52.381 0.00 0.00 0.00 5.19
280 281 1.488393 GGTAAGAAGATGCTGCCCTCT 59.512 52.381 0.00 0.00 0.00 3.69
281 282 2.559440 GTAAGAAGATGCTGCCCTCTG 58.441 52.381 0.00 0.00 0.00 3.35
282 283 0.255318 AAGAAGATGCTGCCCTCTGG 59.745 55.000 0.00 0.00 0.00 3.86
296 297 1.270907 CTCTGGGGTAGAGTTGTGCT 58.729 55.000 0.00 0.00 46.45 4.40
297 298 1.625818 CTCTGGGGTAGAGTTGTGCTT 59.374 52.381 0.00 0.00 46.45 3.91
298 299 2.832129 CTCTGGGGTAGAGTTGTGCTTA 59.168 50.000 0.00 0.00 46.45 3.09
299 300 3.244582 TCTGGGGTAGAGTTGTGCTTAA 58.755 45.455 0.00 0.00 0.00 1.85
301 302 2.304761 TGGGGTAGAGTTGTGCTTAAGG 59.695 50.000 4.29 0.00 0.00 2.69
302 303 2.355818 GGGGTAGAGTTGTGCTTAAGGG 60.356 54.545 4.29 0.00 0.00 3.95
303 304 2.305052 GGGTAGAGTTGTGCTTAAGGGT 59.695 50.000 4.29 0.00 0.00 4.34
304 305 3.335579 GGTAGAGTTGTGCTTAAGGGTG 58.664 50.000 4.29 0.00 0.00 4.61
306 307 2.851195 AGAGTTGTGCTTAAGGGTGTG 58.149 47.619 4.29 0.00 0.00 3.82
308 309 2.949644 GAGTTGTGCTTAAGGGTGTGTT 59.050 45.455 4.29 0.00 0.00 3.32
309 310 3.361786 AGTTGTGCTTAAGGGTGTGTTT 58.638 40.909 4.29 0.00 0.00 2.83
310 311 3.130340 AGTTGTGCTTAAGGGTGTGTTTG 59.870 43.478 4.29 0.00 0.00 2.93
311 312 2.028130 TGTGCTTAAGGGTGTGTTTGG 58.972 47.619 4.29 0.00 0.00 3.28
314 315 3.252458 GTGCTTAAGGGTGTGTTTGGTAG 59.748 47.826 4.29 0.00 0.00 3.18
315 316 2.228103 GCTTAAGGGTGTGTTTGGTAGC 59.772 50.000 4.29 0.00 0.00 3.58
316 317 3.482436 CTTAAGGGTGTGTTTGGTAGCA 58.518 45.455 0.00 0.00 0.00 3.49
317 318 2.675658 AAGGGTGTGTTTGGTAGCAT 57.324 45.000 0.00 0.00 0.00 3.79
319 320 2.957474 AGGGTGTGTTTGGTAGCATTT 58.043 42.857 0.00 0.00 0.00 2.32
321 322 3.320826 AGGGTGTGTTTGGTAGCATTTTC 59.679 43.478 0.00 0.00 0.00 2.29
322 323 3.068873 GGGTGTGTTTGGTAGCATTTTCA 59.931 43.478 0.00 0.00 0.00 2.69
323 324 4.442192 GGGTGTGTTTGGTAGCATTTTCAA 60.442 41.667 0.00 0.00 0.00 2.69
324 325 4.506288 GGTGTGTTTGGTAGCATTTTCAAC 59.494 41.667 0.00 0.00 0.00 3.18
325 326 4.506288 GTGTGTTTGGTAGCATTTTCAACC 59.494 41.667 0.00 0.00 0.00 3.77
327 328 5.594725 TGTGTTTGGTAGCATTTTCAACCTA 59.405 36.000 0.00 0.00 32.99 3.08
329 330 6.806739 GTGTTTGGTAGCATTTTCAACCTATC 59.193 38.462 0.00 0.00 32.99 2.08
330 331 6.491745 TGTTTGGTAGCATTTTCAACCTATCA 59.508 34.615 0.00 0.00 32.99 2.15
331 332 7.178274 TGTTTGGTAGCATTTTCAACCTATCAT 59.822 33.333 0.00 0.00 32.99 2.45
332 333 6.698008 TGGTAGCATTTTCAACCTATCATG 57.302 37.500 0.00 0.00 32.99 3.07
334 335 5.594317 GGTAGCATTTTCAACCTATCATGGT 59.406 40.000 0.00 0.00 43.11 3.55
336 337 6.212888 AGCATTTTCAACCTATCATGGTTC 57.787 37.500 0.00 0.00 46.37 3.62
338 339 6.438425 AGCATTTTCAACCTATCATGGTTCTT 59.562 34.615 0.00 0.00 46.37 2.52
339 340 6.753744 GCATTTTCAACCTATCATGGTTCTTC 59.246 38.462 0.00 0.00 46.37 2.87
340 341 7.363268 GCATTTTCAACCTATCATGGTTCTTCT 60.363 37.037 0.00 0.00 46.37 2.85
342 343 5.359194 TCAACCTATCATGGTTCTTCTCC 57.641 43.478 0.00 0.00 46.37 3.71
344 345 5.129485 TCAACCTATCATGGTTCTTCTCCTC 59.871 44.000 0.00 0.00 46.37 3.71
347 348 6.444704 ACCTATCATGGTTCTTCTCCTCTTA 58.555 40.000 0.00 0.00 36.89 2.10
348 349 7.079048 ACCTATCATGGTTCTTCTCCTCTTAT 58.921 38.462 0.00 0.00 36.89 1.73
349 350 8.235230 ACCTATCATGGTTCTTCTCCTCTTATA 58.765 37.037 0.00 0.00 36.89 0.98
350 351 8.527810 CCTATCATGGTTCTTCTCCTCTTATAC 58.472 40.741 0.00 0.00 0.00 1.47
351 352 7.921041 ATCATGGTTCTTCTCCTCTTATACA 57.079 36.000 0.00 0.00 0.00 2.29
352 353 7.921041 TCATGGTTCTTCTCCTCTTATACAT 57.079 36.000 0.00 0.00 0.00 2.29
353 354 7.730084 TCATGGTTCTTCTCCTCTTATACATG 58.270 38.462 0.00 0.00 33.93 3.21
354 355 7.345653 TCATGGTTCTTCTCCTCTTATACATGT 59.654 37.037 2.69 2.69 34.21 3.21
356 357 7.331026 TGGTTCTTCTCCTCTTATACATGTTG 58.669 38.462 2.30 0.00 0.00 3.33
357 358 7.180229 TGGTTCTTCTCCTCTTATACATGTTGA 59.820 37.037 2.30 0.00 0.00 3.18
358 359 8.041323 GGTTCTTCTCCTCTTATACATGTTGAA 58.959 37.037 2.30 0.00 0.00 2.69
359 360 8.874816 GTTCTTCTCCTCTTATACATGTTGAAC 58.125 37.037 2.30 0.00 0.00 3.18
360 361 8.134202 TCTTCTCCTCTTATACATGTTGAACA 57.866 34.615 2.30 0.00 0.00 3.18
361 362 8.762645 TCTTCTCCTCTTATACATGTTGAACAT 58.237 33.333 2.30 4.72 39.91 2.71
374 375 5.466432 TGTTGAACATGCATTTGTTGTTG 57.534 34.783 10.33 0.00 39.85 3.33
375 376 4.934001 TGTTGAACATGCATTTGTTGTTGT 59.066 33.333 10.33 0.00 39.85 3.32
376 377 5.063186 TGTTGAACATGCATTTGTTGTTGTC 59.937 36.000 10.33 0.00 39.85 3.18
378 379 4.804665 TGAACATGCATTTGTTGTTGTCTG 59.195 37.500 10.33 0.00 39.85 3.51
379 380 3.719924 ACATGCATTTGTTGTTGTCTGG 58.280 40.909 0.00 0.00 0.00 3.86
380 381 3.132646 ACATGCATTTGTTGTTGTCTGGT 59.867 39.130 0.00 0.00 0.00 4.00
381 382 4.340666 ACATGCATTTGTTGTTGTCTGGTA 59.659 37.500 0.00 0.00 0.00 3.25
383 384 3.243367 TGCATTTGTTGTTGTCTGGTAGC 60.243 43.478 0.00 0.00 0.00 3.58
385 386 4.559300 GCATTTGTTGTTGTCTGGTAGCAT 60.559 41.667 0.00 0.00 0.00 3.79
386 387 5.531634 CATTTGTTGTTGTCTGGTAGCATT 58.468 37.500 0.00 0.00 0.00 3.56
387 388 4.566545 TTGTTGTTGTCTGGTAGCATTG 57.433 40.909 0.00 0.00 0.00 2.82
388 389 3.550820 TGTTGTTGTCTGGTAGCATTGT 58.449 40.909 0.00 0.00 0.00 2.71
389 390 3.951037 TGTTGTTGTCTGGTAGCATTGTT 59.049 39.130 0.00 0.00 0.00 2.83
390 391 4.202000 TGTTGTTGTCTGGTAGCATTGTTG 60.202 41.667 0.00 0.00 0.00 3.33
398 399 2.749076 TGGTAGCATTGTTGAGACATGC 59.251 45.455 0.00 0.00 38.97 4.06
401 402 4.635765 GGTAGCATTGTTGAGACATGCTAA 59.364 41.667 13.28 0.00 44.60 3.09
403 404 4.582869 AGCATTGTTGAGACATGCTAAGA 58.417 39.130 4.07 0.00 42.93 2.10
409 410 4.931601 TGTTGAGACATGCTAAGATGACAC 59.068 41.667 0.00 0.00 0.00 3.67
421 425 5.277828 GCTAAGATGACACTTTGGACGTTTT 60.278 40.000 0.00 0.00 0.00 2.43
556 560 1.554617 TCACTGGAAATGCTCGGATCA 59.445 47.619 0.00 0.00 0.00 2.92
565 569 0.391661 TGCTCGGATCAGCAGTTTCC 60.392 55.000 3.70 0.00 44.73 3.13
688 698 1.512735 AATCTAGCCTCACCCCCTTC 58.487 55.000 0.00 0.00 0.00 3.46
700 710 1.127567 CCCCCTTCCACTCACTCACA 61.128 60.000 0.00 0.00 0.00 3.58
714 724 2.233676 CACTCACACATAGCCACTACCA 59.766 50.000 0.00 0.00 0.00 3.25
715 725 2.903784 ACTCACACATAGCCACTACCAA 59.096 45.455 0.00 0.00 0.00 3.67
764 774 1.098050 GGCGGCTGTGATTTCAGATT 58.902 50.000 0.00 0.00 37.61 2.40
854 870 3.465990 CCGTCTGGTCGACCTAGTA 57.534 57.895 33.39 13.99 39.56 1.82
1135 1153 4.408921 TCCGATATGGTCCATTGTTTCTCT 59.591 41.667 10.33 0.00 39.52 3.10
1137 1155 5.696724 CCGATATGGTCCATTGTTTCTCTAC 59.303 44.000 10.33 0.00 0.00 2.59
1193 1211 0.317160 AACTGCAATGACGTCGAGGA 59.683 50.000 12.85 3.44 0.00 3.71
1223 1241 3.141398 TGCTTCGAATGAAAAGAGCACT 58.859 40.909 0.00 0.00 32.66 4.40
1289 1308 0.305922 GATAGCATCAACACCAGCGC 59.694 55.000 0.00 0.00 0.00 5.92
1307 1326 1.377725 CCGAAGAGCAAGTGGCCAT 60.378 57.895 9.72 0.00 46.50 4.40
1309 1328 0.957395 CGAAGAGCAAGTGGCCATGT 60.957 55.000 9.72 0.00 46.50 3.21
1310 1329 1.251251 GAAGAGCAAGTGGCCATGTT 58.749 50.000 9.72 0.76 46.50 2.71
1311 1330 1.200948 GAAGAGCAAGTGGCCATGTTC 59.799 52.381 9.72 12.24 46.50 3.18
1313 1332 0.610232 GAGCAAGTGGCCATGTTCCT 60.610 55.000 9.72 0.23 46.50 3.36
1314 1333 0.610232 AGCAAGTGGCCATGTTCCTC 60.610 55.000 9.72 0.00 46.50 3.71
1333 1352 6.431198 TCCTCCATGTTATTACGAAAAAGC 57.569 37.500 0.00 0.00 0.00 3.51
1334 1353 5.355910 TCCTCCATGTTATTACGAAAAAGCC 59.644 40.000 0.00 0.00 0.00 4.35
1335 1354 5.449999 CCTCCATGTTATTACGAAAAAGCCC 60.450 44.000 0.00 0.00 0.00 5.19
1449 1471 3.430453 CCAGACAAGCCCCAAATAAAGA 58.570 45.455 0.00 0.00 0.00 2.52
1555 1589 1.752501 GATGTTGTCGATGGCGTCCG 61.753 60.000 0.14 0.00 38.98 4.79
1625 1659 7.658982 ACATATTTTGTAGATCGCATCAGTCAT 59.341 33.333 0.00 0.00 36.57 3.06
1666 1705 5.677612 CGCTCTGTGACTAGTTTATTACGAG 59.322 44.000 0.00 0.00 35.78 4.18
1758 1810 0.465642 CCTCCCCAAATAAGTCCGGC 60.466 60.000 0.00 0.00 0.00 6.13
1914 1966 1.670083 GTTACGTTTGCGGGCCTCT 60.670 57.895 0.84 0.00 43.45 3.69
1984 2036 5.048083 CGAATTTTCAAGGGGAGTTTGATCA 60.048 40.000 0.00 0.00 34.76 2.92
2070 2122 5.540337 AGTTGAGAATCTACCACTTGACTCA 59.460 40.000 0.00 0.00 41.89 3.41
2128 2183 0.462047 GTGGAGGGCAATACACTCGG 60.462 60.000 0.00 0.00 32.11 4.63
2312 2367 1.968540 GCCAGAACAGGGTGTCAGC 60.969 63.158 0.00 0.00 0.00 4.26
2388 2443 1.063717 ACCGATTGCCAGAATTGGGAT 60.064 47.619 6.50 0.00 45.01 3.85
2457 2512 1.800805 CGCGGATAATCTCAAGCCAT 58.199 50.000 0.00 0.00 0.00 4.40
2482 2537 0.755686 GCCCTCATCGGTCTGAATCT 59.244 55.000 0.00 0.00 0.00 2.40
2489 2544 2.787473 TCGGTCTGAATCTGCCAAAT 57.213 45.000 0.00 0.00 0.00 2.32
2498 2553 2.610438 ATCTGCCAAATCCACTTGGT 57.390 45.000 4.41 0.00 46.53 3.67
2597 2653 6.779860 ACCACTTTACCATGTGATACTTCTT 58.220 36.000 0.00 0.00 36.38 2.52
2600 2656 8.237267 CCACTTTACCATGTGATACTTCTTTTC 58.763 37.037 0.00 0.00 36.38 2.29
2651 2707 3.833070 GAGAGAAGTTTGGTGACCTCCTA 59.167 47.826 2.11 0.00 0.00 2.94
2666 2722 6.043243 GTGACCTCCTAATGAAGGGATTCATA 59.957 42.308 4.04 0.00 46.55 2.15
2720 2780 3.712218 AGGCTAATAAGGGAGGAGTTCAC 59.288 47.826 0.00 0.00 0.00 3.18
2801 2861 0.613260 AGCTTGGCGACTATTGGACA 59.387 50.000 0.00 0.00 0.00 4.02
3071 3131 1.191535 TATTGGAGGTGGGTCAGACG 58.808 55.000 0.00 0.00 0.00 4.18
3088 3148 0.606401 ACGTCCATTGGCCACAAGAG 60.606 55.000 3.88 0.00 40.49 2.85
3093 3153 1.856873 ATTGGCCACAAGAGGGGGA 60.857 57.895 3.88 0.00 40.49 4.81
3096 3156 2.616458 GGCCACAAGAGGGGGACAT 61.616 63.158 0.00 0.00 0.00 3.06
3224 3284 2.871096 TGGCCCGTCAAGAAATAAGT 57.129 45.000 0.00 0.00 0.00 2.24
3244 3304 3.689649 AGTTCCGACTTCCACATTTATGC 59.310 43.478 0.00 0.00 29.87 3.14
3275 3335 2.633967 TCCAACCGCTCTTTACCAACTA 59.366 45.455 0.00 0.00 0.00 2.24
3281 3341 3.865745 CCGCTCTTTACCAACTACATCAG 59.134 47.826 0.00 0.00 0.00 2.90
3318 3378 5.242838 GTGGTGGTCAAATCCATGTTTAAGA 59.757 40.000 0.00 0.00 39.81 2.10
3330 3390 4.513442 CATGTTTAAGAATCACCTCCCGA 58.487 43.478 0.00 0.00 0.00 5.14
3427 3487 2.814919 TCGGTTTATTCGGTTTGCATGT 59.185 40.909 0.00 0.00 0.00 3.21
3441 3501 5.383958 GTTTGCATGTTTCGGTTTATACGA 58.616 37.500 0.00 0.00 38.78 3.43
3570 3631 4.762765 ACCATAATAACCAAAGTTGACGCA 59.237 37.500 0.00 0.00 36.68 5.24
3946 4010 9.072294 CATATCGAAACCAGAAACCATAAAAAC 57.928 33.333 0.00 0.00 0.00 2.43
3977 4041 6.857777 TCGGTTCGGTTTAGTTTATTTTCA 57.142 33.333 0.00 0.00 0.00 2.69
4018 4082 5.587289 GGTTTTAAAATGCACAGAGTGACA 58.413 37.500 3.52 0.00 35.23 3.58
4020 4084 4.829064 TTAAAATGCACAGAGTGACACC 57.171 40.909 0.84 0.00 35.23 4.16
4021 4085 1.229428 AAATGCACAGAGTGACACCG 58.771 50.000 0.84 0.00 35.23 4.94
4022 4086 0.106708 AATGCACAGAGTGACACCGT 59.893 50.000 0.84 0.00 35.23 4.83
4023 4087 0.601046 ATGCACAGAGTGACACCGTG 60.601 55.000 13.39 13.39 35.23 4.94
4024 4088 2.598632 GCACAGAGTGACACCGTGC 61.599 63.158 22.12 22.12 45.25 5.34
4025 4089 2.027605 ACAGAGTGACACCGTGCG 59.972 61.111 0.84 0.00 0.00 5.34
4062 4126 1.773052 ACCTCATGGATCACCTCATGG 59.227 52.381 9.06 0.00 40.63 3.66
4068 4132 2.550175 TGGATCACCTCATGGAGAACA 58.450 47.619 0.00 0.00 36.56 3.18
4145 4209 1.705873 ATCCGAGGAGCGATTAAGGT 58.294 50.000 0.00 0.00 44.57 3.50
4156 4220 1.679680 CGATTAAGGTCGCCCTAGTGA 59.320 52.381 0.00 0.00 41.56 3.41
4167 4231 1.277273 GCCCTAGTGACGTACCCTTTT 59.723 52.381 0.00 0.00 0.00 2.27
4178 4242 1.743394 GTACCCTTTTGCCAGAATCCG 59.257 52.381 0.00 0.00 0.00 4.18
4199 4263 6.639563 TCCGAAATATCACATTGAGAACTGA 58.360 36.000 0.00 0.00 0.00 3.41
4200 4264 7.102993 TCCGAAATATCACATTGAGAACTGAA 58.897 34.615 0.00 0.00 0.00 3.02
4201 4265 7.278646 TCCGAAATATCACATTGAGAACTGAAG 59.721 37.037 0.00 0.00 0.00 3.02
4202 4266 7.404985 CGAAATATCACATTGAGAACTGAAGG 58.595 38.462 0.00 0.00 0.00 3.46
4203 4267 7.065085 CGAAATATCACATTGAGAACTGAAGGT 59.935 37.037 0.00 0.00 0.00 3.50
4204 4268 8.641498 AAATATCACATTGAGAACTGAAGGTT 57.359 30.769 0.00 0.00 41.40 3.50
4205 4269 8.641498 AATATCACATTGAGAACTGAAGGTTT 57.359 30.769 0.00 0.00 38.41 3.27
4206 4270 6.966534 ATCACATTGAGAACTGAAGGTTTT 57.033 33.333 0.00 0.00 38.41 2.43
4221 4285 5.894393 TGAAGGTTTTTGTTCCTCCATGTTA 59.106 36.000 0.00 0.00 33.09 2.41
4242 4306 0.251916 TGGCCATAACCAGAGGTTCG 59.748 55.000 0.00 0.00 43.05 3.95
4305 4369 3.764434 CTCTAGGTACTTCAAGCAGGTGA 59.236 47.826 0.00 0.00 41.75 4.02
4317 4381 6.832520 TCAAGCAGGTGATTTTTGCTATTA 57.167 33.333 0.00 0.00 46.72 0.98
4326 4390 6.460261 GGTGATTTTTGCTATTAGGGAGCTTC 60.460 42.308 0.00 0.00 40.76 3.86
4412 4476 5.277250 TGGTATCCATACTTCAAGGTGAGA 58.723 41.667 0.00 0.00 33.81 3.27
4418 4482 6.962182 TCCATACTTCAAGGTGAGAATTGAT 58.038 36.000 0.00 0.00 35.47 2.57
4476 4540 4.697828 TGTTCAAGTTGAGCACTAACACAA 59.302 37.500 17.37 0.00 32.63 3.33
4506 4570 6.316890 GTGATGCCATTTTTAGGATTGCATTT 59.683 34.615 0.00 0.00 36.40 2.32
4533 4597 6.239317 GGCAATAGATGGTACTCATGTCACTA 60.239 42.308 2.07 0.00 35.97 2.74
4560 4624 2.009681 TCCTAGGTCACAGTCTGCAA 57.990 50.000 9.08 0.00 0.00 4.08
4581 4647 0.253160 ATACAGGGGGAGGAAGCACA 60.253 55.000 0.00 0.00 0.00 4.57
4596 4662 2.862541 AGCACAACACAAGCCAGAATA 58.137 42.857 0.00 0.00 0.00 1.75
4680 4746 2.661169 GCGCATGATGCTAACATTCTCG 60.661 50.000 16.17 0.00 42.25 4.04
4723 4789 1.520666 GGATCAACATCCCCGACGT 59.479 57.895 0.00 0.00 42.91 4.34
4740 4806 3.367087 CGACGTCAAGTTCTACCTTGGAT 60.367 47.826 17.16 0.00 41.72 3.41
4746 4812 5.755861 GTCAAGTTCTACCTTGGATATGCTC 59.244 44.000 0.00 0.00 41.72 4.26
4841 4907 5.394224 GGAACTATCCTAGGACTGCATAC 57.606 47.826 15.42 2.83 42.93 2.39
4845 4911 2.730934 TCCTAGGACTGCATACGAGT 57.269 50.000 7.62 0.00 0.00 4.18
4856 4922 6.092259 GGACTGCATACGAGTTGTTTAATCTT 59.908 38.462 0.00 0.00 0.00 2.40
4865 4931 6.581542 ACGAGTTGTTTAATCTTAGACACTCG 59.418 38.462 23.94 23.94 43.85 4.18
4870 4936 5.185249 TGTTTAATCTTAGACACTCGAGCCT 59.815 40.000 13.61 9.94 0.00 4.58
4871 4937 5.916661 TTAATCTTAGACACTCGAGCCTT 57.083 39.130 13.61 0.00 0.00 4.35
4872 4938 7.094075 TGTTTAATCTTAGACACTCGAGCCTTA 60.094 37.037 13.61 0.64 0.00 2.69
4873 4939 5.916661 AATCTTAGACACTCGAGCCTTAA 57.083 39.130 13.61 5.80 0.00 1.85
4883 4949 7.285858 AGACACTCGAGCCTTAATTAGAGTAAT 59.714 37.037 13.61 0.00 36.90 1.89
4899 4965 5.189180 AGAGTAATTGTTGAGAGGGCATTC 58.811 41.667 0.00 0.00 0.00 2.67
4953 5019 3.992999 TCAAAAGCCATTCCACCCATAT 58.007 40.909 0.00 0.00 0.00 1.78
4959 5025 2.689421 GCCATTCCACCCATATTCCACA 60.689 50.000 0.00 0.00 0.00 4.17
5017 5083 2.692368 GGATCCTCCAGTGGGGCA 60.692 66.667 9.92 0.00 36.28 5.36
5080 5146 0.037590 TGTTGTTAGCTCCGGCCATT 59.962 50.000 2.24 0.00 39.73 3.16
5159 5225 3.679389 CAATGTGGCTTAACAGAGGTCT 58.321 45.455 0.00 0.00 32.52 3.85
5173 5239 2.027377 AGAGGTCTGTGCAGGATTTGAG 60.027 50.000 0.00 0.00 0.00 3.02
5174 5240 1.980765 AGGTCTGTGCAGGATTTGAGA 59.019 47.619 0.00 0.00 0.00 3.27
5176 5242 3.009916 AGGTCTGTGCAGGATTTGAGAAT 59.990 43.478 0.00 0.00 0.00 2.40
5177 5243 3.128242 GGTCTGTGCAGGATTTGAGAATG 59.872 47.826 0.00 0.00 0.00 2.67
5178 5244 4.005650 GTCTGTGCAGGATTTGAGAATGA 58.994 43.478 0.00 0.00 0.00 2.57
5179 5245 4.005650 TCTGTGCAGGATTTGAGAATGAC 58.994 43.478 0.00 0.00 0.00 3.06
5180 5246 2.743664 TGTGCAGGATTTGAGAATGACG 59.256 45.455 0.00 0.00 0.00 4.35
5181 5247 1.739466 TGCAGGATTTGAGAATGACGC 59.261 47.619 0.00 0.00 0.00 5.19
5182 5248 2.012673 GCAGGATTTGAGAATGACGCT 58.987 47.619 0.00 0.00 0.00 5.07
5183 5249 2.421424 GCAGGATTTGAGAATGACGCTT 59.579 45.455 0.00 0.00 0.00 4.68
5184 5250 3.730061 GCAGGATTTGAGAATGACGCTTG 60.730 47.826 0.00 0.00 0.00 4.01
5185 5251 3.686241 CAGGATTTGAGAATGACGCTTGA 59.314 43.478 0.00 0.00 0.00 3.02
5186 5252 4.334759 CAGGATTTGAGAATGACGCTTGAT 59.665 41.667 0.00 0.00 0.00 2.57
5187 5253 4.946157 AGGATTTGAGAATGACGCTTGATT 59.054 37.500 0.00 0.00 0.00 2.57
5188 5254 5.416952 AGGATTTGAGAATGACGCTTGATTT 59.583 36.000 0.00 0.00 0.00 2.17
5189 5255 6.071728 AGGATTTGAGAATGACGCTTGATTTT 60.072 34.615 0.00 0.00 0.00 1.82
5190 5256 6.587608 GGATTTGAGAATGACGCTTGATTTTT 59.412 34.615 0.00 0.00 0.00 1.94
5327 5393 9.761504 TTGAATTTCTGAACATATTTTGAAGCA 57.238 25.926 0.00 0.00 0.00 3.91
5328 5394 9.195411 TGAATTTCTGAACATATTTTGAAGCAC 57.805 29.630 0.00 0.00 0.00 4.40
5329 5395 9.195411 GAATTTCTGAACATATTTTGAAGCACA 57.805 29.630 0.00 0.00 0.00 4.57
5336 5402 0.385974 ATTTTGAAGCACAGCGTCGC 60.386 50.000 9.80 9.80 39.73 5.19
5338 5404 1.831389 TTTGAAGCACAGCGTCGCTC 61.831 55.000 18.76 6.53 39.73 5.03
5447 5513 9.878599 GAATTGTATTAACCGGAAACATGATAG 57.121 33.333 9.46 0.00 0.00 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.131396 CAGTTTGAGTACAAGACGCCTT 58.869 45.455 0.00 0.00 37.32 4.35
2 3 2.480845 ACAGTTTGAGTACAAGACGCC 58.519 47.619 0.00 0.00 37.32 5.68
5 6 9.918630 TTACCTATTACAGTTTGAGTACAAGAC 57.081 33.333 0.00 0.00 37.32 3.01
12 13 8.027771 CGTCTCTTTACCTATTACAGTTTGAGT 58.972 37.037 0.00 0.00 0.00 3.41
13 14 7.488471 CCGTCTCTTTACCTATTACAGTTTGAG 59.512 40.741 0.00 0.00 0.00 3.02
14 15 7.177216 TCCGTCTCTTTACCTATTACAGTTTGA 59.823 37.037 0.00 0.00 0.00 2.69
15 16 7.318141 TCCGTCTCTTTACCTATTACAGTTTG 58.682 38.462 0.00 0.00 0.00 2.93
17 18 6.096564 CCTCCGTCTCTTTACCTATTACAGTT 59.903 42.308 0.00 0.00 0.00 3.16
18 19 5.593502 CCTCCGTCTCTTTACCTATTACAGT 59.406 44.000 0.00 0.00 0.00 3.55
19 20 5.009811 CCCTCCGTCTCTTTACCTATTACAG 59.990 48.000 0.00 0.00 0.00 2.74
20 21 4.891756 CCCTCCGTCTCTTTACCTATTACA 59.108 45.833 0.00 0.00 0.00 2.41
21 22 4.261952 GCCCTCCGTCTCTTTACCTATTAC 60.262 50.000 0.00 0.00 0.00 1.89
22 23 3.893813 GCCCTCCGTCTCTTTACCTATTA 59.106 47.826 0.00 0.00 0.00 0.98
23 24 2.699321 GCCCTCCGTCTCTTTACCTATT 59.301 50.000 0.00 0.00 0.00 1.73
25 26 1.287146 AGCCCTCCGTCTCTTTACCTA 59.713 52.381 0.00 0.00 0.00 3.08
27 28 1.682323 CTAGCCCTCCGTCTCTTTACC 59.318 57.143 0.00 0.00 0.00 2.85
28 29 1.067364 GCTAGCCCTCCGTCTCTTTAC 59.933 57.143 2.29 0.00 0.00 2.01
30 31 0.614979 TGCTAGCCCTCCGTCTCTTT 60.615 55.000 13.29 0.00 0.00 2.52
31 32 0.614979 TTGCTAGCCCTCCGTCTCTT 60.615 55.000 13.29 0.00 0.00 2.85
32 33 0.614979 TTTGCTAGCCCTCCGTCTCT 60.615 55.000 13.29 0.00 0.00 3.10
33 34 0.466124 ATTTGCTAGCCCTCCGTCTC 59.534 55.000 13.29 0.00 0.00 3.36
34 35 1.413077 GTATTTGCTAGCCCTCCGTCT 59.587 52.381 13.29 0.00 0.00 4.18
35 36 1.413077 AGTATTTGCTAGCCCTCCGTC 59.587 52.381 13.29 0.00 0.00 4.79
36 37 1.139058 CAGTATTTGCTAGCCCTCCGT 59.861 52.381 13.29 0.00 0.00 4.69
37 38 1.541233 CCAGTATTTGCTAGCCCTCCG 60.541 57.143 13.29 0.00 0.00 4.63
40 41 2.196595 TCACCAGTATTTGCTAGCCCT 58.803 47.619 13.29 0.00 0.00 5.19
41 42 2.710096 TCACCAGTATTTGCTAGCCC 57.290 50.000 13.29 0.00 0.00 5.19
42 43 3.316308 CCATTCACCAGTATTTGCTAGCC 59.684 47.826 13.29 0.00 0.00 3.93
43 44 3.947834 ACCATTCACCAGTATTTGCTAGC 59.052 43.478 8.10 8.10 0.00 3.42
44 45 4.336433 CCACCATTCACCAGTATTTGCTAG 59.664 45.833 0.00 0.00 0.00 3.42
45 46 4.269183 CCACCATTCACCAGTATTTGCTA 58.731 43.478 0.00 0.00 0.00 3.49
46 47 3.091545 CCACCATTCACCAGTATTTGCT 58.908 45.455 0.00 0.00 0.00 3.91
47 48 2.417243 GCCACCATTCACCAGTATTTGC 60.417 50.000 0.00 0.00 0.00 3.68
48 49 2.159393 CGCCACCATTCACCAGTATTTG 60.159 50.000 0.00 0.00 0.00 2.32
50 51 1.280710 TCGCCACCATTCACCAGTATT 59.719 47.619 0.00 0.00 0.00 1.89
51 52 0.908910 TCGCCACCATTCACCAGTAT 59.091 50.000 0.00 0.00 0.00 2.12
54 55 1.176527 AAATCGCCACCATTCACCAG 58.823 50.000 0.00 0.00 0.00 4.00
56 57 2.088423 TGTAAATCGCCACCATTCACC 58.912 47.619 0.00 0.00 0.00 4.02
57 58 2.486203 TGTGTAAATCGCCACCATTCAC 59.514 45.455 0.00 0.00 0.00 3.18
59 60 3.057876 TGTTGTGTAAATCGCCACCATTC 60.058 43.478 0.00 0.00 0.00 2.67
61 62 2.509569 TGTTGTGTAAATCGCCACCAT 58.490 42.857 0.00 0.00 0.00 3.55
63 64 4.688511 TTATGTTGTGTAAATCGCCACC 57.311 40.909 0.00 0.00 0.00 4.61
64 65 8.850454 AATATTTATGTTGTGTAAATCGCCAC 57.150 30.769 0.00 0.00 34.54 5.01
65 66 9.295214 CAAATATTTATGTTGTGTAAATCGCCA 57.705 29.630 0.00 0.00 34.54 5.69
66 67 9.296400 ACAAATATTTATGTTGTGTAAATCGCC 57.704 29.630 0.00 0.00 34.28 5.54
94 95 9.359653 AGGAAAGCAGATTATTAATGCATAGTT 57.640 29.630 0.00 0.00 42.45 2.24
95 96 8.790718 CAGGAAAGCAGATTATTAATGCATAGT 58.209 33.333 0.00 0.00 42.45 2.12
99 100 7.340232 AGAACAGGAAAGCAGATTATTAATGCA 59.660 33.333 0.00 0.00 42.45 3.96
100 101 7.646922 CAGAACAGGAAAGCAGATTATTAATGC 59.353 37.037 0.00 0.00 40.29 3.56
101 102 8.680903 ACAGAACAGGAAAGCAGATTATTAATG 58.319 33.333 0.00 0.00 0.00 1.90
102 103 8.814038 ACAGAACAGGAAAGCAGATTATTAAT 57.186 30.769 0.00 0.00 0.00 1.40
104 105 7.665559 ACAACAGAACAGGAAAGCAGATTATTA 59.334 33.333 0.00 0.00 0.00 0.98
105 106 6.491403 ACAACAGAACAGGAAAGCAGATTATT 59.509 34.615 0.00 0.00 0.00 1.40
108 109 4.210331 ACAACAGAACAGGAAAGCAGATT 58.790 39.130 0.00 0.00 0.00 2.40
110 111 3.281727 ACAACAGAACAGGAAAGCAGA 57.718 42.857 0.00 0.00 0.00 4.26
112 113 4.947388 AGTTTACAACAGAACAGGAAAGCA 59.053 37.500 0.00 0.00 0.00 3.91
114 115 7.041098 AGCATAGTTTACAACAGAACAGGAAAG 60.041 37.037 0.00 0.00 0.00 2.62
115 116 6.770785 AGCATAGTTTACAACAGAACAGGAAA 59.229 34.615 0.00 0.00 0.00 3.13
116 117 6.296026 AGCATAGTTTACAACAGAACAGGAA 58.704 36.000 0.00 0.00 0.00 3.36
117 118 5.865085 AGCATAGTTTACAACAGAACAGGA 58.135 37.500 0.00 0.00 0.00 3.86
119 120 8.479313 TGATAGCATAGTTTACAACAGAACAG 57.521 34.615 0.00 0.00 0.00 3.16
125 126 9.838975 CAACAAATGATAGCATAGTTTACAACA 57.161 29.630 8.48 0.00 33.35 3.33
126 127 8.798153 GCAACAAATGATAGCATAGTTTACAAC 58.202 33.333 8.48 0.00 33.35 3.32
128 129 8.279970 AGCAACAAATGATAGCATAGTTTACA 57.720 30.769 8.48 0.00 33.35 2.41
129 130 9.573133 AAAGCAACAAATGATAGCATAGTTTAC 57.427 29.630 8.48 5.43 33.35 2.01
134 135 9.955208 TCAATAAAGCAACAAATGATAGCATAG 57.045 29.630 0.00 0.00 33.44 2.23
137 138 8.692110 CTTCAATAAAGCAACAAATGATAGCA 57.308 30.769 0.00 0.00 0.00 3.49
152 153 6.005583 TGCTGAGACAAAGCTTCAATAAAG 57.994 37.500 0.00 0.00 41.42 1.85
153 154 5.764686 TCTGCTGAGACAAAGCTTCAATAAA 59.235 36.000 0.00 0.00 41.42 1.40
155 156 4.898320 TCTGCTGAGACAAAGCTTCAATA 58.102 39.130 0.00 0.00 41.42 1.90
157 158 3.198409 TCTGCTGAGACAAAGCTTCAA 57.802 42.857 0.00 0.00 41.42 2.69
158 159 2.916702 TCTGCTGAGACAAAGCTTCA 57.083 45.000 0.00 0.00 41.42 3.02
159 160 7.727331 AATATATCTGCTGAGACAAAGCTTC 57.273 36.000 0.00 0.00 41.42 3.86
160 161 7.228308 GGAAATATATCTGCTGAGACAAAGCTT 59.772 37.037 0.00 0.00 41.42 3.74
161 162 6.709846 GGAAATATATCTGCTGAGACAAAGCT 59.290 38.462 0.00 0.00 41.42 3.74
162 163 6.484643 TGGAAATATATCTGCTGAGACAAAGC 59.515 38.462 0.00 0.00 41.22 3.51
163 164 7.714377 ACTGGAAATATATCTGCTGAGACAAAG 59.286 37.037 0.00 0.00 0.00 2.77
164 165 7.568349 ACTGGAAATATATCTGCTGAGACAAA 58.432 34.615 0.00 0.00 0.00 2.83
165 166 7.129457 ACTGGAAATATATCTGCTGAGACAA 57.871 36.000 0.00 0.00 0.00 3.18
166 167 6.737720 ACTGGAAATATATCTGCTGAGACA 57.262 37.500 0.00 0.00 0.00 3.41
167 168 7.497249 ACAAACTGGAAATATATCTGCTGAGAC 59.503 37.037 0.00 0.00 0.00 3.36
168 169 7.568349 ACAAACTGGAAATATATCTGCTGAGA 58.432 34.615 0.00 0.00 0.00 3.27
169 170 7.798596 ACAAACTGGAAATATATCTGCTGAG 57.201 36.000 0.00 0.00 0.00 3.35
170 171 8.049117 AGAACAAACTGGAAATATATCTGCTGA 58.951 33.333 0.00 0.00 0.00 4.26
172 173 8.680903 CAAGAACAAACTGGAAATATATCTGCT 58.319 33.333 0.00 0.00 0.00 4.24
173 174 8.462016 ACAAGAACAAACTGGAAATATATCTGC 58.538 33.333 0.00 0.00 0.00 4.26
174 175 9.778993 CACAAGAACAAACTGGAAATATATCTG 57.221 33.333 0.00 0.00 0.00 2.90
179 180 9.295825 TCATACACAAGAACAAACTGGAAATAT 57.704 29.630 0.00 0.00 0.00 1.28
180 181 8.684386 TCATACACAAGAACAAACTGGAAATA 57.316 30.769 0.00 0.00 0.00 1.40
181 182 7.581213 TCATACACAAGAACAAACTGGAAAT 57.419 32.000 0.00 0.00 0.00 2.17
182 183 7.397892 TTCATACACAAGAACAAACTGGAAA 57.602 32.000 0.00 0.00 0.00 3.13
183 184 7.068103 ACATTCATACACAAGAACAAACTGGAA 59.932 33.333 0.00 0.00 0.00 3.53
185 186 6.638063 CACATTCATACACAAGAACAAACTGG 59.362 38.462 0.00 0.00 0.00 4.00
186 187 7.416817 TCACATTCATACACAAGAACAAACTG 58.583 34.615 0.00 0.00 0.00 3.16
188 189 7.417612 ACTCACATTCATACACAAGAACAAAC 58.582 34.615 0.00 0.00 0.00 2.93
189 190 7.566760 ACTCACATTCATACACAAGAACAAA 57.433 32.000 0.00 0.00 0.00 2.83
190 191 8.669946 TTACTCACATTCATACACAAGAACAA 57.330 30.769 0.00 0.00 0.00 2.83
191 192 7.095229 GCTTACTCACATTCATACACAAGAACA 60.095 37.037 0.00 0.00 0.00 3.18
192 193 7.237173 GCTTACTCACATTCATACACAAGAAC 58.763 38.462 0.00 0.00 0.00 3.01
193 194 6.371548 GGCTTACTCACATTCATACACAAGAA 59.628 38.462 0.00 0.00 0.00 2.52
194 195 5.874810 GGCTTACTCACATTCATACACAAGA 59.125 40.000 0.00 0.00 0.00 3.02
195 196 5.877012 AGGCTTACTCACATTCATACACAAG 59.123 40.000 0.00 0.00 0.00 3.16
196 197 5.643348 CAGGCTTACTCACATTCATACACAA 59.357 40.000 0.00 0.00 0.00 3.33
197 198 5.178061 CAGGCTTACTCACATTCATACACA 58.822 41.667 0.00 0.00 0.00 3.72
198 199 5.178797 ACAGGCTTACTCACATTCATACAC 58.821 41.667 0.00 0.00 0.00 2.90
200 201 5.874810 TCAACAGGCTTACTCACATTCATAC 59.125 40.000 0.00 0.00 0.00 2.39
202 203 4.910195 TCAACAGGCTTACTCACATTCAT 58.090 39.130 0.00 0.00 0.00 2.57
204 205 5.689383 TTTCAACAGGCTTACTCACATTC 57.311 39.130 0.00 0.00 0.00 2.67
205 206 6.655078 ATTTTCAACAGGCTTACTCACATT 57.345 33.333 0.00 0.00 0.00 2.71
206 207 7.611467 TCATATTTTCAACAGGCTTACTCACAT 59.389 33.333 0.00 0.00 0.00 3.21
207 208 6.939730 TCATATTTTCAACAGGCTTACTCACA 59.060 34.615 0.00 0.00 0.00 3.58
208 209 7.377766 TCATATTTTCAACAGGCTTACTCAC 57.622 36.000 0.00 0.00 0.00 3.51
209 210 7.665559 AGTTCATATTTTCAACAGGCTTACTCA 59.334 33.333 0.00 0.00 0.00 3.41
211 212 8.299570 CAAGTTCATATTTTCAACAGGCTTACT 58.700 33.333 0.00 0.00 0.00 2.24
212 213 8.296713 TCAAGTTCATATTTTCAACAGGCTTAC 58.703 33.333 0.00 0.00 0.00 2.34
213 214 8.402798 TCAAGTTCATATTTTCAACAGGCTTA 57.597 30.769 0.00 0.00 0.00 3.09
214 215 7.288810 TCAAGTTCATATTTTCAACAGGCTT 57.711 32.000 0.00 0.00 0.00 4.35
217 218 9.748708 TCTTTTCAAGTTCATATTTTCAACAGG 57.251 29.630 0.00 0.00 0.00 4.00
223 224 9.617975 CCAGTCTCTTTTCAAGTTCATATTTTC 57.382 33.333 0.00 0.00 0.00 2.29
224 225 8.579863 CCCAGTCTCTTTTCAAGTTCATATTTT 58.420 33.333 0.00 0.00 0.00 1.82
225 226 7.725844 ACCCAGTCTCTTTTCAAGTTCATATTT 59.274 33.333 0.00 0.00 0.00 1.40
226 227 7.175641 CACCCAGTCTCTTTTCAAGTTCATATT 59.824 37.037 0.00 0.00 0.00 1.28
227 228 6.656693 CACCCAGTCTCTTTTCAAGTTCATAT 59.343 38.462 0.00 0.00 0.00 1.78
228 229 5.997746 CACCCAGTCTCTTTTCAAGTTCATA 59.002 40.000 0.00 0.00 0.00 2.15
229 230 4.823989 CACCCAGTCTCTTTTCAAGTTCAT 59.176 41.667 0.00 0.00 0.00 2.57
231 232 3.003793 GCACCCAGTCTCTTTTCAAGTTC 59.996 47.826 0.00 0.00 0.00 3.01
232 233 2.952310 GCACCCAGTCTCTTTTCAAGTT 59.048 45.455 0.00 0.00 0.00 2.66
234 235 2.551459 CAGCACCCAGTCTCTTTTCAAG 59.449 50.000 0.00 0.00 0.00 3.02
236 237 1.768275 TCAGCACCCAGTCTCTTTTCA 59.232 47.619 0.00 0.00 0.00 2.69
237 238 2.550830 TCAGCACCCAGTCTCTTTTC 57.449 50.000 0.00 0.00 0.00 2.29
238 239 2.439507 TCTTCAGCACCCAGTCTCTTTT 59.560 45.455 0.00 0.00 0.00 2.27
239 240 2.038295 CTCTTCAGCACCCAGTCTCTTT 59.962 50.000 0.00 0.00 0.00 2.52
240 241 1.622811 CTCTTCAGCACCCAGTCTCTT 59.377 52.381 0.00 0.00 0.00 2.85
241 242 1.265236 CTCTTCAGCACCCAGTCTCT 58.735 55.000 0.00 0.00 0.00 3.10
242 243 0.248843 CCTCTTCAGCACCCAGTCTC 59.751 60.000 0.00 0.00 0.00 3.36
243 244 0.472734 ACCTCTTCAGCACCCAGTCT 60.473 55.000 0.00 0.00 0.00 3.24
244 245 1.267121 TACCTCTTCAGCACCCAGTC 58.733 55.000 0.00 0.00 0.00 3.51
247 248 2.024176 TCTTACCTCTTCAGCACCCA 57.976 50.000 0.00 0.00 0.00 4.51
248 249 2.567615 TCTTCTTACCTCTTCAGCACCC 59.432 50.000 0.00 0.00 0.00 4.61
249 250 3.963428 TCTTCTTACCTCTTCAGCACC 57.037 47.619 0.00 0.00 0.00 5.01
250 251 3.620821 GCATCTTCTTACCTCTTCAGCAC 59.379 47.826 0.00 0.00 0.00 4.40
252 253 3.870419 CAGCATCTTCTTACCTCTTCAGC 59.130 47.826 0.00 0.00 0.00 4.26
253 254 3.870419 GCAGCATCTTCTTACCTCTTCAG 59.130 47.826 0.00 0.00 0.00 3.02
254 255 3.369892 GGCAGCATCTTCTTACCTCTTCA 60.370 47.826 0.00 0.00 0.00 3.02
257 258 1.488393 GGGCAGCATCTTCTTACCTCT 59.512 52.381 0.00 0.00 0.00 3.69
258 259 1.488393 AGGGCAGCATCTTCTTACCTC 59.512 52.381 0.00 0.00 0.00 3.85
260 261 1.488393 AGAGGGCAGCATCTTCTTACC 59.512 52.381 0.00 0.00 0.00 2.85
262 263 1.487976 CCAGAGGGCAGCATCTTCTTA 59.512 52.381 0.00 0.00 0.00 2.10
263 264 0.255318 CCAGAGGGCAGCATCTTCTT 59.745 55.000 0.00 0.00 0.00 2.52
264 265 1.633915 CCCAGAGGGCAGCATCTTCT 61.634 60.000 0.00 0.00 35.35 2.85
265 266 1.153005 CCCAGAGGGCAGCATCTTC 60.153 63.158 0.00 0.00 35.35 2.87
266 267 3.004951 CCCAGAGGGCAGCATCTT 58.995 61.111 0.00 0.00 35.35 2.40
278 279 1.729586 AAGCACAACTCTACCCCAGA 58.270 50.000 0.00 0.00 0.00 3.86
280 281 2.304761 CCTTAAGCACAACTCTACCCCA 59.695 50.000 0.00 0.00 0.00 4.96
281 282 2.355818 CCCTTAAGCACAACTCTACCCC 60.356 54.545 0.00 0.00 0.00 4.95
282 283 2.305052 ACCCTTAAGCACAACTCTACCC 59.695 50.000 0.00 0.00 0.00 3.69
283 284 3.244457 ACACCCTTAAGCACAACTCTACC 60.244 47.826 0.00 0.00 0.00 3.18
284 285 3.746492 CACACCCTTAAGCACAACTCTAC 59.254 47.826 0.00 0.00 0.00 2.59
285 286 3.389983 ACACACCCTTAAGCACAACTCTA 59.610 43.478 0.00 0.00 0.00 2.43
286 287 2.172717 ACACACCCTTAAGCACAACTCT 59.827 45.455 0.00 0.00 0.00 3.24
287 288 2.572290 ACACACCCTTAAGCACAACTC 58.428 47.619 0.00 0.00 0.00 3.01
290 291 2.428890 CCAAACACACCCTTAAGCACAA 59.571 45.455 0.00 0.00 0.00 3.33
291 292 2.028130 CCAAACACACCCTTAAGCACA 58.972 47.619 0.00 0.00 0.00 4.57
292 293 2.028876 ACCAAACACACCCTTAAGCAC 58.971 47.619 0.00 0.00 0.00 4.40
293 294 2.445682 ACCAAACACACCCTTAAGCA 57.554 45.000 0.00 0.00 0.00 3.91
296 297 3.579534 TGCTACCAAACACACCCTTAA 57.420 42.857 0.00 0.00 0.00 1.85
297 298 3.799432 ATGCTACCAAACACACCCTTA 57.201 42.857 0.00 0.00 0.00 2.69
298 299 2.675658 ATGCTACCAAACACACCCTT 57.324 45.000 0.00 0.00 0.00 3.95
299 300 2.675658 AATGCTACCAAACACACCCT 57.324 45.000 0.00 0.00 0.00 4.34
301 302 4.314740 TGAAAATGCTACCAAACACACC 57.685 40.909 0.00 0.00 0.00 4.16
302 303 4.506288 GGTTGAAAATGCTACCAAACACAC 59.494 41.667 0.00 0.00 34.43 3.82
303 304 4.404073 AGGTTGAAAATGCTACCAAACACA 59.596 37.500 0.00 0.00 36.34 3.72
304 305 4.944048 AGGTTGAAAATGCTACCAAACAC 58.056 39.130 0.00 0.00 36.34 3.32
306 307 6.919721 TGATAGGTTGAAAATGCTACCAAAC 58.080 36.000 0.00 0.00 36.34 2.93
308 309 6.096705 CCATGATAGGTTGAAAATGCTACCAA 59.903 38.462 0.00 0.00 36.34 3.67
309 310 5.593909 CCATGATAGGTTGAAAATGCTACCA 59.406 40.000 0.00 0.00 36.34 3.25
310 311 5.594317 ACCATGATAGGTTGAAAATGCTACC 59.406 40.000 0.00 0.00 39.34 3.18
311 312 6.699575 ACCATGATAGGTTGAAAATGCTAC 57.300 37.500 0.00 0.00 39.34 3.58
323 324 4.889780 AGAGGAGAAGAACCATGATAGGT 58.110 43.478 0.00 0.00 45.91 3.08
324 325 5.885449 AAGAGGAGAAGAACCATGATAGG 57.115 43.478 0.00 0.00 0.00 2.57
325 326 9.083422 TGTATAAGAGGAGAAGAACCATGATAG 57.917 37.037 0.00 0.00 0.00 2.08
327 328 7.921041 TGTATAAGAGGAGAAGAACCATGAT 57.079 36.000 0.00 0.00 0.00 2.45
329 330 7.504403 ACATGTATAAGAGGAGAAGAACCATG 58.496 38.462 0.00 0.00 0.00 3.66
330 331 7.682787 ACATGTATAAGAGGAGAAGAACCAT 57.317 36.000 0.00 0.00 0.00 3.55
331 332 7.180229 TCAACATGTATAAGAGGAGAAGAACCA 59.820 37.037 0.00 0.00 0.00 3.67
332 333 7.556844 TCAACATGTATAAGAGGAGAAGAACC 58.443 38.462 0.00 0.00 0.00 3.62
334 335 8.593679 TGTTCAACATGTATAAGAGGAGAAGAA 58.406 33.333 0.00 0.00 0.00 2.52
335 336 8.134202 TGTTCAACATGTATAAGAGGAGAAGA 57.866 34.615 0.00 0.00 0.00 2.87
336 337 8.954950 ATGTTCAACATGTATAAGAGGAGAAG 57.045 34.615 0.98 0.00 37.45 2.85
351 352 5.585445 ACAACAACAAATGCATGTTCAACAT 59.415 32.000 0.00 0.00 41.44 2.71
352 353 4.934001 ACAACAACAAATGCATGTTCAACA 59.066 33.333 0.00 0.00 41.44 3.33
353 354 5.291614 AGACAACAACAAATGCATGTTCAAC 59.708 36.000 0.00 0.00 41.44 3.18
354 355 5.291371 CAGACAACAACAAATGCATGTTCAA 59.709 36.000 0.00 0.00 41.44 2.69
356 357 4.209703 CCAGACAACAACAAATGCATGTTC 59.790 41.667 0.00 0.00 41.44 3.18
357 358 4.121317 CCAGACAACAACAAATGCATGTT 58.879 39.130 0.00 0.00 44.08 2.71
358 359 3.132646 ACCAGACAACAACAAATGCATGT 59.867 39.130 0.00 0.00 35.70 3.21
359 360 3.719924 ACCAGACAACAACAAATGCATG 58.280 40.909 0.00 0.00 0.00 4.06
360 361 4.559300 GCTACCAGACAACAACAAATGCAT 60.559 41.667 0.00 0.00 0.00 3.96
361 362 3.243367 GCTACCAGACAACAACAAATGCA 60.243 43.478 0.00 0.00 0.00 3.96
362 363 3.243367 TGCTACCAGACAACAACAAATGC 60.243 43.478 0.00 0.00 0.00 3.56
363 364 4.566545 TGCTACCAGACAACAACAAATG 57.433 40.909 0.00 0.00 0.00 2.32
366 367 3.951037 ACAATGCTACCAGACAACAACAA 59.049 39.130 0.00 0.00 0.00 2.83
367 368 3.550820 ACAATGCTACCAGACAACAACA 58.449 40.909 0.00 0.00 0.00 3.33
368 369 4.036262 TCAACAATGCTACCAGACAACAAC 59.964 41.667 0.00 0.00 0.00 3.32
369 370 4.203226 TCAACAATGCTACCAGACAACAA 58.797 39.130 0.00 0.00 0.00 2.83
370 371 3.814625 TCAACAATGCTACCAGACAACA 58.185 40.909 0.00 0.00 0.00 3.33
371 372 4.065088 TCTCAACAATGCTACCAGACAAC 58.935 43.478 0.00 0.00 0.00 3.32
372 373 4.065088 GTCTCAACAATGCTACCAGACAA 58.935 43.478 0.00 0.00 30.02 3.18
373 374 3.070878 TGTCTCAACAATGCTACCAGACA 59.929 43.478 0.00 0.00 34.72 3.41
374 375 3.664107 TGTCTCAACAATGCTACCAGAC 58.336 45.455 0.00 0.00 30.70 3.51
375 376 4.256110 CATGTCTCAACAATGCTACCAGA 58.744 43.478 0.00 0.00 39.30 3.86
376 377 3.181503 GCATGTCTCAACAATGCTACCAG 60.182 47.826 0.00 0.00 39.30 4.00
378 379 3.012518 AGCATGTCTCAACAATGCTACC 58.987 45.455 7.56 0.00 42.84 3.18
379 380 5.582269 TCTTAGCATGTCTCAACAATGCTAC 59.418 40.000 14.36 0.00 43.78 3.58
380 381 5.733676 TCTTAGCATGTCTCAACAATGCTA 58.266 37.500 11.48 11.48 42.84 3.49
381 382 4.582869 TCTTAGCATGTCTCAACAATGCT 58.417 39.130 13.32 13.32 44.73 3.79
383 384 6.093082 TGTCATCTTAGCATGTCTCAACAATG 59.907 38.462 0.00 0.00 39.30 2.82
385 386 5.409520 GTGTCATCTTAGCATGTCTCAACAA 59.590 40.000 0.00 0.00 39.30 2.83
386 387 4.931601 GTGTCATCTTAGCATGTCTCAACA 59.068 41.667 0.00 0.00 40.38 3.33
387 388 5.174395 AGTGTCATCTTAGCATGTCTCAAC 58.826 41.667 0.00 0.00 0.00 3.18
388 389 5.411831 AGTGTCATCTTAGCATGTCTCAA 57.588 39.130 0.00 0.00 0.00 3.02
389 390 5.411831 AAGTGTCATCTTAGCATGTCTCA 57.588 39.130 0.00 0.00 0.00 3.27
390 391 5.064452 CCAAAGTGTCATCTTAGCATGTCTC 59.936 44.000 0.00 0.00 0.00 3.36
398 399 5.924475 AAACGTCCAAAGTGTCATCTTAG 57.076 39.130 0.00 0.00 0.00 2.18
401 402 3.945285 ACAAAACGTCCAAAGTGTCATCT 59.055 39.130 0.00 0.00 0.00 2.90
403 404 4.420168 CAACAAAACGTCCAAAGTGTCAT 58.580 39.130 0.00 0.00 0.00 3.06
409 410 1.566404 GGGCAACAAAACGTCCAAAG 58.434 50.000 0.00 0.00 39.74 2.77
630 638 0.882042 CAGATTTCCATCTCCCGCCG 60.882 60.000 0.00 0.00 37.71 6.46
688 698 1.276138 TGGCTATGTGTGAGTGAGTGG 59.724 52.381 0.00 0.00 0.00 4.00
700 710 3.587506 AGAAAGGTTGGTAGTGGCTATGT 59.412 43.478 0.00 0.00 0.00 2.29
714 724 2.306219 GAGGCAGTAGGGAAGAAAGGTT 59.694 50.000 0.00 0.00 0.00 3.50
715 725 1.909986 GAGGCAGTAGGGAAGAAAGGT 59.090 52.381 0.00 0.00 0.00 3.50
1116 1134 6.479972 TCGTAGAGAAACAATGGACCATAT 57.520 37.500 7.59 0.00 0.00 1.78
1135 1153 2.820728 TGGATCCTCTCCTGTTCGTA 57.179 50.000 14.23 0.00 45.21 3.43
1137 1155 3.334583 TTTTGGATCCTCTCCTGTTCG 57.665 47.619 14.23 0.00 45.21 3.95
1193 1211 3.548745 TCATTCGAAGCATCCACAGAT 57.451 42.857 3.35 0.00 0.00 2.90
1223 1241 1.277842 TCTCGACAAGCCTGGCAAATA 59.722 47.619 22.65 0.00 0.00 1.40
1289 1308 1.377725 ATGGCCACTTGCTCTTCGG 60.378 57.895 8.16 0.00 40.92 4.30
1307 1326 7.574217 GCTTTTTCGTAATAACATGGAGGAACA 60.574 37.037 0.00 0.00 0.00 3.18
1309 1328 6.127842 GGCTTTTTCGTAATAACATGGAGGAA 60.128 38.462 0.00 0.00 0.00 3.36
1310 1329 5.355910 GGCTTTTTCGTAATAACATGGAGGA 59.644 40.000 0.00 0.00 0.00 3.71
1311 1330 5.449999 GGGCTTTTTCGTAATAACATGGAGG 60.450 44.000 0.00 0.00 0.00 4.30
1313 1332 4.399934 GGGGCTTTTTCGTAATAACATGGA 59.600 41.667 0.00 0.00 0.00 3.41
1314 1333 4.440940 GGGGGCTTTTTCGTAATAACATGG 60.441 45.833 0.00 0.00 0.00 3.66
1468 1493 4.640690 ACCACCACCTCCCGAGCT 62.641 66.667 0.00 0.00 0.00 4.09
1625 1659 4.118480 GCGTGATTCCATGCCGTA 57.882 55.556 0.00 0.00 46.80 4.02
1758 1810 2.203139 TGGTGCCACGACAACCTG 60.203 61.111 0.00 0.00 0.00 4.00
1830 1882 6.413052 AGACTGCAATCACATGTTCTTCTAT 58.587 36.000 0.00 0.00 0.00 1.98
1831 1883 5.798132 AGACTGCAATCACATGTTCTTCTA 58.202 37.500 0.00 0.00 0.00 2.10
1832 1884 4.649692 AGACTGCAATCACATGTTCTTCT 58.350 39.130 0.00 0.00 0.00 2.85
1889 1941 1.665599 CGCAAACGTAACGTCCCCT 60.666 57.895 0.00 0.00 39.99 4.79
1914 1966 2.053865 CCGCCTACCTTCCGGTACA 61.054 63.158 0.00 0.00 43.29 2.90
1984 2036 0.323957 GAACTAGCGGTCCTTTGGGT 59.676 55.000 0.00 0.00 0.00 4.51
2045 2097 6.031751 AGTCAAGTGGTAGATTCTCAACTC 57.968 41.667 0.00 0.00 0.00 3.01
2070 2122 2.432146 TGACTCGCTATCTTGGCATCTT 59.568 45.455 0.00 0.00 0.00 2.40
2190 2245 1.375523 CGTGGCCTTAGCGGACTTT 60.376 57.895 3.32 0.00 43.44 2.66
2312 2367 4.578928 CCTCCATTAAAATTGGTACCGGAG 59.421 45.833 9.46 15.87 37.78 4.63
2365 2420 1.133025 CCAATTCTGGCAATCGGTGAC 59.867 52.381 0.00 0.00 35.39 3.67
2388 2443 2.692368 GCCCCTGGATCTGGTGGA 60.692 66.667 0.00 0.00 0.00 4.02
2425 2480 1.940883 ATCCGCGCGAAGTACCTTCA 61.941 55.000 34.63 0.00 40.17 3.02
2489 2544 2.224159 GCCCTCCTCACCAAGTGGA 61.224 63.158 3.83 0.00 37.56 4.02
2498 2553 2.038952 CGGATGAATATTGCCCTCCTCA 59.961 50.000 0.00 0.00 0.00 3.86
2597 2653 2.108075 TGGGCTGGAGAGAACAATGAAA 59.892 45.455 0.00 0.00 0.00 2.69
2600 2656 1.280133 TCTGGGCTGGAGAGAACAATG 59.720 52.381 0.00 0.00 0.00 2.82
2720 2780 1.880340 GCCGCTCGAGTGATTCTGG 60.880 63.158 27.11 10.21 0.00 3.86
2801 2861 2.462723 GTCTGCTAGGGAAGGACTTCT 58.537 52.381 11.46 0.00 39.45 2.85
2812 2872 0.598562 AGTGACACACGTCTGCTAGG 59.401 55.000 8.59 0.00 43.06 3.02
3071 3131 0.967380 CCCTCTTGTGGCCAATGGAC 60.967 60.000 7.24 0.00 0.00 4.02
3093 3153 1.710809 GGCCACATTAGGGGGATATGT 59.289 52.381 0.00 0.00 32.98 2.29
3096 3156 1.131303 CCGGCCACATTAGGGGGATA 61.131 60.000 2.24 0.00 0.00 2.59
3224 3284 3.950397 AGCATAAATGTGGAAGTCGGAA 58.050 40.909 0.00 0.00 0.00 4.30
3244 3304 2.812178 CGGTTGGACGGCGGTAAG 60.812 66.667 13.24 0.00 0.00 2.34
3275 3335 2.351276 GGGTTGCCCGACTGATGT 59.649 61.111 0.00 0.00 32.13 3.06
3318 3378 1.282157 CCTTCCTTTCGGGAGGTGATT 59.718 52.381 0.00 0.00 46.01 2.57
3330 3390 1.271926 CCGTCCATTGGTCCTTCCTTT 60.272 52.381 1.86 0.00 37.07 3.11
3427 3487 7.437793 AACTGGAAAATCGTATAAACCGAAA 57.562 32.000 0.00 0.00 37.93 3.46
3683 3744 3.682858 CACGTCGTCCATAACCTTTCAAT 59.317 43.478 0.00 0.00 0.00 2.57
3755 3816 7.203255 AGAGTAAAATTTCCTGGAAAGAACG 57.797 36.000 24.65 0.00 34.92 3.95
3842 3906 5.806366 CCGAATGGTTAACCGAATAAACT 57.194 39.130 19.65 0.00 39.43 2.66
3977 4041 3.130280 ACCGAACCGAAAAACCATACT 57.870 42.857 0.00 0.00 0.00 2.12
4018 4082 1.065109 GCAAAAACCTTCGCACGGT 59.935 52.632 0.00 0.00 35.97 4.83
4020 4084 0.307760 AGAGCAAAAACCTTCGCACG 59.692 50.000 0.00 0.00 0.00 5.34
4021 4085 2.119457 CAAGAGCAAAAACCTTCGCAC 58.881 47.619 0.00 0.00 0.00 5.34
4022 4086 2.020720 TCAAGAGCAAAAACCTTCGCA 58.979 42.857 0.00 0.00 0.00 5.10
4023 4087 2.385315 GTCAAGAGCAAAAACCTTCGC 58.615 47.619 0.00 0.00 0.00 4.70
4024 4088 2.618709 AGGTCAAGAGCAAAAACCTTCG 59.381 45.455 1.84 0.00 37.01 3.79
4025 4089 3.632145 TGAGGTCAAGAGCAAAAACCTTC 59.368 43.478 1.84 0.00 40.39 3.46
4062 4126 2.233922 TCTTGACGGGATCCTTGTTCTC 59.766 50.000 12.58 0.34 0.00 2.87
4068 4132 6.575254 GCAGATATATTCTTGACGGGATCCTT 60.575 42.308 12.58 0.00 29.93 3.36
4145 4209 1.750399 GGGTACGTCACTAGGGCGA 60.750 63.158 14.37 0.00 0.00 5.54
4156 4220 2.433436 GATTCTGGCAAAAGGGTACGT 58.567 47.619 0.00 0.00 0.00 3.57
4167 4231 4.149511 TGTGATATTTCGGATTCTGGCA 57.850 40.909 0.00 0.00 0.00 4.92
4178 4242 8.273780 ACCTTCAGTTCTCAATGTGATATTTC 57.726 34.615 0.00 0.00 0.00 2.17
4199 4263 6.994421 ATAACATGGAGGAACAAAAACCTT 57.006 33.333 0.00 0.00 36.57 3.50
4200 4264 6.239572 CCAATAACATGGAGGAACAAAAACCT 60.240 38.462 0.00 0.00 43.54 3.50
4201 4265 5.931724 CCAATAACATGGAGGAACAAAAACC 59.068 40.000 0.00 0.00 43.54 3.27
4202 4266 5.408299 GCCAATAACATGGAGGAACAAAAAC 59.592 40.000 0.00 0.00 43.54 2.43
4203 4267 5.512232 GGCCAATAACATGGAGGAACAAAAA 60.512 40.000 0.00 0.00 43.54 1.94
4204 4268 4.020662 GGCCAATAACATGGAGGAACAAAA 60.021 41.667 0.00 0.00 43.54 2.44
4205 4269 3.513515 GGCCAATAACATGGAGGAACAAA 59.486 43.478 0.00 0.00 43.54 2.83
4206 4270 3.096092 GGCCAATAACATGGAGGAACAA 58.904 45.455 0.00 0.00 43.54 2.83
4221 4285 2.683742 CGAACCTCTGGTTATGGCCAAT 60.684 50.000 10.96 0.36 46.95 3.16
4242 4306 1.265905 GAACGTGTTGTGAATGACCCC 59.734 52.381 0.00 0.00 0.00 4.95
4305 4369 5.437060 TCGAAGCTCCCTAATAGCAAAAAT 58.563 37.500 0.00 0.00 42.62 1.82
4317 4381 0.555769 ATCTCTCCTCGAAGCTCCCT 59.444 55.000 0.00 0.00 0.00 4.20
4326 4390 3.756434 GGTCTCCTTATCATCTCTCCTCG 59.244 52.174 0.00 0.00 0.00 4.63
4412 4476 9.193806 AGCCATGAAAAGTGTCTATTATCAATT 57.806 29.630 0.00 0.00 0.00 2.32
4418 4482 9.851686 ATATCAAGCCATGAAAAGTGTCTATTA 57.148 29.630 0.00 0.00 42.54 0.98
4423 4487 6.441093 TCATATCAAGCCATGAAAAGTGTC 57.559 37.500 0.00 0.00 42.54 3.67
4476 4540 4.088634 TCCTAAAAATGGCATCACAAGCT 58.911 39.130 0.00 0.00 0.00 3.74
4506 4570 3.716353 ACATGAGTACCATCTATTGCCCA 59.284 43.478 0.00 0.00 31.94 5.36
4533 4597 2.158295 ACTGTGACCTAGGAACTCTGGT 60.158 50.000 17.98 9.88 45.51 4.00
4560 4624 0.253160 TGCTTCCTCCCCCTGTATGT 60.253 55.000 0.00 0.00 0.00 2.29
4680 4746 1.000955 AGGTCGACTCATGTTGTCACC 59.999 52.381 16.46 20.59 36.65 4.02
4746 4812 3.705638 CGGCCGACATGCATAGCG 61.706 66.667 24.07 6.11 0.00 4.26
4839 4905 7.747799 CGAGTGTCTAAGATTAAACAACTCGTA 59.252 37.037 11.95 0.00 37.84 3.43
4841 4907 6.800408 TCGAGTGTCTAAGATTAAACAACTCG 59.200 38.462 13.52 13.52 40.47 4.18
4845 4911 5.867716 GGCTCGAGTGTCTAAGATTAAACAA 59.132 40.000 15.13 0.00 0.00 2.83
4856 4922 6.120905 ACTCTAATTAAGGCTCGAGTGTCTA 58.879 40.000 15.13 0.00 31.19 2.59
4865 4931 9.601217 TCTCAACAATTACTCTAATTAAGGCTC 57.399 33.333 0.00 0.00 36.29 4.70
4870 4936 8.325787 TGCCCTCTCAACAATTACTCTAATTAA 58.674 33.333 0.00 0.00 36.29 1.40
4871 4937 7.857456 TGCCCTCTCAACAATTACTCTAATTA 58.143 34.615 0.00 0.00 36.29 1.40
4872 4938 6.721318 TGCCCTCTCAACAATTACTCTAATT 58.279 36.000 0.00 0.00 38.84 1.40
4873 4939 6.313519 TGCCCTCTCAACAATTACTCTAAT 57.686 37.500 0.00 0.00 0.00 1.73
4883 4949 0.690192 TCCGAATGCCCTCTCAACAA 59.310 50.000 0.00 0.00 0.00 2.83
4899 4965 3.810310 AACCTATTCTTCAGAGCTCCG 57.190 47.619 10.93 0.00 0.00 4.63
4953 5019 5.876357 AGAACAAGCTTAACCTATGTGGAA 58.124 37.500 0.00 0.00 39.71 3.53
5017 5083 2.079158 CTCAGGCACGTGTTCATCAAT 58.921 47.619 18.38 0.00 0.00 2.57
5080 5146 2.064434 TTGTCAAATGCCTCCACACA 57.936 45.000 0.00 0.00 0.00 3.72
5159 5225 2.743664 CGTCATTCTCAAATCCTGCACA 59.256 45.455 0.00 0.00 0.00 4.57
5301 5367 9.761504 TGCTTCAAAATATGTTCAGAAATTCAA 57.238 25.926 0.00 0.00 0.00 2.69
5302 5368 9.195411 GTGCTTCAAAATATGTTCAGAAATTCA 57.805 29.630 0.00 0.00 0.00 2.57
5303 5369 9.195411 TGTGCTTCAAAATATGTTCAGAAATTC 57.805 29.630 0.00 0.00 0.00 2.17
5304 5370 9.199982 CTGTGCTTCAAAATATGTTCAGAAATT 57.800 29.630 0.00 0.00 0.00 1.82
5305 5371 7.330208 GCTGTGCTTCAAAATATGTTCAGAAAT 59.670 33.333 0.00 0.00 0.00 2.17
5306 5372 6.642131 GCTGTGCTTCAAAATATGTTCAGAAA 59.358 34.615 0.00 0.00 0.00 2.52
5307 5373 6.151691 GCTGTGCTTCAAAATATGTTCAGAA 58.848 36.000 0.00 0.00 0.00 3.02
5308 5374 5.617529 CGCTGTGCTTCAAAATATGTTCAGA 60.618 40.000 0.00 0.00 0.00 3.27
5309 5375 4.556135 CGCTGTGCTTCAAAATATGTTCAG 59.444 41.667 0.00 0.00 0.00 3.02
5310 5376 4.023279 ACGCTGTGCTTCAAAATATGTTCA 60.023 37.500 0.00 0.00 0.00 3.18
5311 5377 4.475944 ACGCTGTGCTTCAAAATATGTTC 58.524 39.130 0.00 0.00 0.00 3.18
5312 5378 4.475944 GACGCTGTGCTTCAAAATATGTT 58.524 39.130 0.00 0.00 0.00 2.71
5313 5379 3.424829 CGACGCTGTGCTTCAAAATATGT 60.425 43.478 0.00 0.00 0.00 2.29
5314 5380 3.093574 CGACGCTGTGCTTCAAAATATG 58.906 45.455 0.00 0.00 0.00 1.78
5315 5381 2.476185 GCGACGCTGTGCTTCAAAATAT 60.476 45.455 13.73 0.00 0.00 1.28
5316 5382 1.136085 GCGACGCTGTGCTTCAAAATA 60.136 47.619 13.73 0.00 0.00 1.40
5317 5383 0.385974 GCGACGCTGTGCTTCAAAAT 60.386 50.000 13.73 0.00 0.00 1.82
5318 5384 1.010125 GCGACGCTGTGCTTCAAAA 60.010 52.632 13.73 0.00 0.00 2.44
5319 5385 1.831389 GAGCGACGCTGTGCTTCAAA 61.831 55.000 29.85 0.00 42.60 2.69
5320 5386 2.280119 AGCGACGCTGTGCTTCAA 60.280 55.556 23.84 0.00 38.57 2.69
5321 5387 2.734723 GAGCGACGCTGTGCTTCA 60.735 61.111 29.85 0.00 42.60 3.02
5322 5388 3.832171 CGAGCGACGCTGTGCTTC 61.832 66.667 29.85 10.91 42.60 3.86
5323 5389 4.647615 ACGAGCGACGCTGTGCTT 62.648 61.111 29.85 3.32 46.94 3.91
5326 5392 2.710971 CTTCACGAGCGACGCTGTG 61.711 63.158 29.85 29.94 46.94 3.66
5327 5393 2.429236 CTTCACGAGCGACGCTGT 60.429 61.111 29.85 21.46 46.94 4.40
5328 5394 3.175240 CCTTCACGAGCGACGCTG 61.175 66.667 29.85 20.79 46.94 5.18
5329 5395 2.416244 TTTCCTTCACGAGCGACGCT 62.416 55.000 24.77 24.77 46.94 5.07
5336 5402 3.199880 AGGGCATATTTCCTTCACGAG 57.800 47.619 0.00 0.00 0.00 4.18
5338 5404 4.310769 CTCTAGGGCATATTTCCTTCACG 58.689 47.826 0.00 0.00 34.75 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.