Multiple sequence alignment - TraesCS2B01G070900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G070900 chr2B 100.000 8350 0 0 1 8350 37553212 37544863 0.000000e+00 15420.0
1 TraesCS2B01G070900 chr2B 93.772 3693 168 20 2611 6275 38337467 38333809 0.000000e+00 5489.0
2 TraesCS2B01G070900 chr2B 92.665 2563 113 16 3766 6275 37696684 37694144 0.000000e+00 3622.0
3 TraesCS2B01G070900 chr2B 92.619 1260 83 10 6575 7826 38188565 38187308 0.000000e+00 1803.0
4 TraesCS2B01G070900 chr2B 92.619 1260 80 11 6575 7826 38198055 38196801 0.000000e+00 1799.0
5 TraesCS2B01G070900 chr2B 95.243 1072 51 0 2700 3771 37709656 37708585 0.000000e+00 1698.0
6 TraesCS2B01G070900 chr2B 91.772 1033 60 12 6781 7806 37681425 37680411 0.000000e+00 1413.0
7 TraesCS2B01G070900 chr2B 90.927 1025 75 12 944 1961 37710707 37709694 0.000000e+00 1362.0
8 TraesCS2B01G070900 chr2B 91.728 955 56 7 6375 7309 38333787 38332836 0.000000e+00 1304.0
9 TraesCS2B01G070900 chr2B 92.052 931 66 5 1036 1961 38338992 38338065 0.000000e+00 1303.0
10 TraesCS2B01G070900 chr2B 86.187 1028 95 20 7308 8316 38325888 38324889 0.000000e+00 1068.0
11 TraesCS2B01G070900 chr2B 92.665 559 35 3 1050 1603 38018408 38017851 0.000000e+00 800.0
12 TraesCS2B01G070900 chr2B 91.985 524 26 7 96 616 37711580 37711070 0.000000e+00 721.0
13 TraesCS2B01G070900 chr2B 93.705 413 22 2 6375 6787 37694122 37693714 4.280000e-172 616.0
14 TraesCS2B01G070900 chr2B 91.469 422 36 0 2259 2680 38012959 38012538 1.560000e-161 580.0
15 TraesCS2B01G070900 chr2B 87.819 509 40 12 533 1040 38339502 38339015 2.020000e-160 577.0
16 TraesCS2B01G070900 chr2B 91.597 357 22 2 1811 2160 38013338 38012983 3.500000e-133 486.0
17 TraesCS2B01G070900 chr2B 84.928 418 40 13 524 939 38018879 38018483 1.310000e-107 401.0
18 TraesCS2B01G070900 chr2B 99.471 189 1 0 1 189 38442135 38441947 2.230000e-90 344.0
19 TraesCS2B01G070900 chr2B 87.622 307 19 8 1 307 37712575 37712288 1.040000e-88 339.0
20 TraesCS2B01G070900 chr2B 93.981 216 13 0 1600 1815 38017750 38017535 2.250000e-85 327.0
21 TraesCS2B01G070900 chr2B 92.857 112 8 0 6272 6383 258065445 258065556 6.710000e-36 163.0
22 TraesCS2B01G070900 chr2B 95.294 85 4 0 2162 2246 25284889 25284805 1.460000e-27 135.0
23 TraesCS2B01G070900 chr2D 93.668 3648 168 22 2662 6281 22917958 22921570 0.000000e+00 5398.0
24 TraesCS2B01G070900 chr2D 92.138 1946 100 21 6375 8312 22921569 22923469 0.000000e+00 2697.0
25 TraesCS2B01G070900 chr2D 90.861 952 55 10 28 967 22914750 22915681 0.000000e+00 1247.0
26 TraesCS2B01G070900 chr2D 92.244 851 56 5 1112 1961 22915989 22916830 0.000000e+00 1197.0
27 TraesCS2B01G070900 chr2D 91.398 93 7 1 2154 2246 142092341 142092250 8.800000e-25 126.0
28 TraesCS2B01G070900 chr2D 89.231 65 4 3 6259 6320 24451724 24451788 2.500000e-10 78.7
29 TraesCS2B01G070900 chrUn 96.432 1934 44 9 3403 5336 364592379 364590471 0.000000e+00 3166.0
30 TraesCS2B01G070900 chrUn 97.796 1225 24 2 7041 8265 423051136 423049915 0.000000e+00 2109.0
31 TraesCS2B01G070900 chrUn 95.822 1101 21 6 4236 5336 442893846 442892771 0.000000e+00 1755.0
32 TraesCS2B01G070900 chrUn 94.021 853 47 2 729 1580 463653558 463652709 0.000000e+00 1290.0
33 TraesCS2B01G070900 chrUn 98.291 702 12 0 3403 4104 469505500 469506201 0.000000e+00 1230.0
34 TraesCS2B01G070900 chrUn 94.140 785 42 3 2619 3401 322040177 322039395 0.000000e+00 1192.0
35 TraesCS2B01G070900 chrUn 94.140 785 42 3 2619 3401 322043446 322042664 0.000000e+00 1192.0
36 TraesCS2B01G070900 chrUn 94.140 785 42 3 2619 3401 366001996 366001214 0.000000e+00 1192.0
37 TraesCS2B01G070900 chrUn 95.535 739 22 1 5338 6065 468144519 468145257 0.000000e+00 1171.0
38 TraesCS2B01G070900 chrUn 98.696 537 7 0 191 727 474150509 474149973 0.000000e+00 953.0
39 TraesCS2B01G070900 chrUn 95.628 366 16 0 1582 1947 322042563 322042198 9.340000e-164 588.0
40 TraesCS2B01G070900 chrUn 95.628 366 16 0 1582 1947 322045832 322045467 9.340000e-164 588.0
41 TraesCS2B01G070900 chrUn 99.471 189 1 0 1 189 276901918 276901730 2.230000e-90 344.0
42 TraesCS2B01G070900 chr2A 87.070 611 58 9 28 636 24485211 24485802 0.000000e+00 671.0
43 TraesCS2B01G070900 chr1D 95.327 107 5 0 6278 6384 315817005 315816899 4.010000e-38 171.0
44 TraesCS2B01G070900 chr1D 95.294 85 4 0 2162 2246 250511440 250511524 1.460000e-27 135.0
45 TraesCS2B01G070900 chr6B 95.146 103 5 0 6275 6377 336181318 336181216 6.710000e-36 163.0
46 TraesCS2B01G070900 chr6B 88.800 125 11 3 6279 6403 718346812 718346933 5.220000e-32 150.0
47 TraesCS2B01G070900 chr6B 92.632 95 7 0 2155 2249 400075929 400075835 4.060000e-28 137.0
48 TraesCS2B01G070900 chr6B 91.579 95 8 0 2155 2249 400142738 400142644 1.890000e-26 132.0
49 TraesCS2B01G070900 chr1B 94.340 106 6 0 6279 6384 415223283 415223388 6.710000e-36 163.0
50 TraesCS2B01G070900 chr1B 92.727 110 7 1 6280 6388 156596659 156596550 3.120000e-34 158.0
51 TraesCS2B01G070900 chr1B 88.095 126 11 2 6277 6402 132274288 132274409 6.750000e-31 147.0
52 TraesCS2B01G070900 chr4D 94.231 104 6 0 6279 6382 54799449 54799346 8.670000e-35 159.0
53 TraesCS2B01G070900 chr3D 90.164 122 9 1 6277 6398 293614244 293614362 1.120000e-33 156.0
54 TraesCS2B01G070900 chr4A 92.708 96 5 2 2153 2248 428159882 428159975 4.060000e-28 137.0
55 TraesCS2B01G070900 chr3B 94.253 87 5 0 2161 2247 527240028 527239942 5.260000e-27 134.0
56 TraesCS2B01G070900 chr5A 93.258 89 6 0 2164 2252 649435001 649435089 1.890000e-26 132.0
57 TraesCS2B01G070900 chr1A 92.473 93 6 1 2162 2253 90167849 90167757 1.890000e-26 132.0
58 TraesCS2B01G070900 chr7B 100.000 29 0 0 1328 1356 553324357 553324385 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G070900 chr2B 37544863 37553212 8349 True 15420.000000 15420 100.000000 1 8350 1 chr2B.!!$R2 8349
1 TraesCS2B01G070900 chr2B 38332836 38339502 6666 True 2168.250000 5489 91.342750 533 7309 4 chr2B.!!$R12 6776
2 TraesCS2B01G070900 chr2B 37693714 37696684 2970 True 2119.000000 3622 93.185000 3766 6787 2 chr2B.!!$R8 3021
3 TraesCS2B01G070900 chr2B 38187308 38188565 1257 True 1803.000000 1803 92.619000 6575 7826 1 chr2B.!!$R4 1251
4 TraesCS2B01G070900 chr2B 38196801 38198055 1254 True 1799.000000 1799 92.619000 6575 7826 1 chr2B.!!$R5 1251
5 TraesCS2B01G070900 chr2B 37680411 37681425 1014 True 1413.000000 1413 91.772000 6781 7806 1 chr2B.!!$R3 1025
6 TraesCS2B01G070900 chr2B 38324889 38325888 999 True 1068.000000 1068 86.187000 7308 8316 1 chr2B.!!$R6 1008
7 TraesCS2B01G070900 chr2B 37708585 37712575 3990 True 1030.000000 1698 91.444250 1 3771 4 chr2B.!!$R9 3770
8 TraesCS2B01G070900 chr2B 38012538 38013338 800 True 533.000000 580 91.533000 1811 2680 2 chr2B.!!$R10 869
9 TraesCS2B01G070900 chr2B 38017535 38018879 1344 True 509.333333 800 90.524667 524 1815 3 chr2B.!!$R11 1291
10 TraesCS2B01G070900 chr2D 22914750 22923469 8719 False 2634.750000 5398 92.227750 28 8312 4 chr2D.!!$F2 8284
11 TraesCS2B01G070900 chrUn 364590471 364592379 1908 True 3166.000000 3166 96.432000 3403 5336 1 chrUn.!!$R2 1933
12 TraesCS2B01G070900 chrUn 423049915 423051136 1221 True 2109.000000 2109 97.796000 7041 8265 1 chrUn.!!$R4 1224
13 TraesCS2B01G070900 chrUn 442892771 442893846 1075 True 1755.000000 1755 95.822000 4236 5336 1 chrUn.!!$R5 1100
14 TraesCS2B01G070900 chrUn 463652709 463653558 849 True 1290.000000 1290 94.021000 729 1580 1 chrUn.!!$R6 851
15 TraesCS2B01G070900 chrUn 469505500 469506201 701 False 1230.000000 1230 98.291000 3403 4104 1 chrUn.!!$F2 701
16 TraesCS2B01G070900 chrUn 366001214 366001996 782 True 1192.000000 1192 94.140000 2619 3401 1 chrUn.!!$R3 782
17 TraesCS2B01G070900 chrUn 468144519 468145257 738 False 1171.000000 1171 95.535000 5338 6065 1 chrUn.!!$F1 727
18 TraesCS2B01G070900 chrUn 474149973 474150509 536 True 953.000000 953 98.696000 191 727 1 chrUn.!!$R7 536
19 TraesCS2B01G070900 chrUn 322039395 322045832 6437 True 890.000000 1192 94.884000 1582 3401 4 chrUn.!!$R8 1819
20 TraesCS2B01G070900 chr2A 24485211 24485802 591 False 671.000000 671 87.070000 28 636 1 chr2A.!!$F1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 1924 0.240945 GGACACGGAAACATGGCAAG 59.759 55.000 0.00 0.00 0.00 4.01 F
1077 2162 0.108424 ACGCAGCCTCATCTCTCAAC 60.108 55.000 0.00 0.00 0.00 3.18 F
1764 3095 0.108804 CTCTGGCCAACGTCGTGTAT 60.109 55.000 7.01 0.00 0.00 2.29 F
1825 3156 0.329596 GGTGTCCCTCAAGCCTGATT 59.670 55.000 0.00 0.00 0.00 2.57 F
2138 5406 0.398696 TGGTAGTCCCAACGCACAAT 59.601 50.000 0.00 0.00 41.50 2.71 F
2982 6259 1.171308 CTTGCCATGTGGAACTGAGG 58.829 55.000 2.55 0.00 38.04 3.86 F
3102 6379 2.582052 TGGGACACTGTGAACAAATCC 58.418 47.619 15.86 9.43 0.00 3.01 F
4465 8571 3.887621 CCCTCGAGGTTACATTTCAGA 57.112 47.619 29.25 0.00 0.00 3.27 F
5314 9469 2.646930 TCACCCTTGATGATCACATGC 58.353 47.619 0.00 0.00 36.82 4.06 F
6027 10196 2.893489 GGCCAAGGATATGGTCAAATCC 59.107 50.000 0.00 0.00 44.70 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2846 6123 0.038067 GCATGATGCTGCAACACCAA 60.038 50.000 14.99 0.00 40.96 3.67 R
2872 6149 5.910637 TTATAAATGTTACCGTCGATGGC 57.089 39.130 23.85 8.18 0.00 4.40 R
3610 7318 0.731417 CTTGAAAGAGGCGGCATCAG 59.269 55.000 17.58 0.88 0.00 2.90 R
3640 7348 2.941453 TCTAGATCCAACACTCGCAC 57.059 50.000 0.00 0.00 0.00 5.34 R
3937 7935 2.102588 AGTTTGGCGAGTTACTCACACT 59.897 45.455 13.14 0.04 0.00 3.55 R
4809 8915 3.593442 ACAGGTGATGAAAAGGGAACA 57.407 42.857 0.00 0.00 0.00 3.18 R
5051 9195 1.555075 TGGCTTGTGTCCAGATAGTCC 59.445 52.381 0.00 0.00 0.00 3.85 R
6275 10454 0.030909 TGGGGCGGAGGGAGTATAAA 60.031 55.000 0.00 0.00 0.00 1.40 R
6283 10462 0.033503 ACTTATTTTGGGGCGGAGGG 60.034 55.000 0.00 0.00 0.00 4.30 R
7700 12883 1.339438 ACTTCAGCTGCGTCATCCATT 60.339 47.619 9.47 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.557924 AGCAAGTGAGTGAGAGAGTGAG 59.442 50.000 0.00 0.00 0.00 3.51
60 61 2.926159 GCAAGTGAGTGAGAGAGTGAGC 60.926 54.545 0.00 0.00 0.00 4.26
61 62 2.284754 AGTGAGTGAGAGAGTGAGCA 57.715 50.000 0.00 0.00 0.00 4.26
62 63 2.591923 AGTGAGTGAGAGAGTGAGCAA 58.408 47.619 0.00 0.00 0.00 3.91
63 64 2.295909 AGTGAGTGAGAGAGTGAGCAAC 59.704 50.000 0.00 0.00 0.00 4.17
64 65 2.295909 GTGAGTGAGAGAGTGAGCAACT 59.704 50.000 0.00 0.00 43.85 3.16
65 66 2.295629 TGAGTGAGAGAGTGAGCAACTG 59.704 50.000 0.00 0.00 40.07 3.16
66 67 2.556189 GAGTGAGAGAGTGAGCAACTGA 59.444 50.000 0.00 0.00 40.07 3.41
80 81 2.407090 CAACTGAATGAGCTGTCGTCA 58.593 47.619 0.00 0.00 0.00 4.35
97 98 2.306847 GTCAACACCACCACTTTGGAT 58.693 47.619 0.00 0.00 40.96 3.41
101 102 1.494721 ACACCACCACTTTGGATCACT 59.505 47.619 0.00 0.00 40.96 3.41
127 128 2.863132 TAACGGTTGCCATTACACCT 57.137 45.000 3.07 0.00 0.00 4.00
165 166 7.065120 TGATTTCCCATGTCAAAACTTGATT 57.935 32.000 0.00 0.00 42.47 2.57
247 249 3.110447 CATGTTTTGGAAAGTGGTGGG 57.890 47.619 0.00 0.00 0.00 4.61
307 1219 6.109359 GCATTTCACTCTACTTGGTATCACT 58.891 40.000 0.00 0.00 0.00 3.41
459 1372 3.554934 ACAACACATGTTCACTGGATGT 58.445 40.909 0.00 0.00 40.06 3.06
516 1429 1.235724 GTGGGGTCGGACAGAAAAAG 58.764 55.000 10.76 0.00 0.00 2.27
547 1466 8.475639 AGTTATGAATCGTCTTAAGAGGCTTAA 58.524 33.333 18.29 10.12 0.00 1.85
548 1467 9.262358 GTTATGAATCGTCTTAAGAGGCTTAAT 57.738 33.333 18.29 15.60 0.00 1.40
549 1468 9.832445 TTATGAATCGTCTTAAGAGGCTTAATT 57.168 29.630 18.29 13.02 0.00 1.40
770 1780 0.249911 GTCGTCACCACCTGCTTTCT 60.250 55.000 0.00 0.00 0.00 2.52
771 1781 0.468226 TCGTCACCACCTGCTTTCTT 59.532 50.000 0.00 0.00 0.00 2.52
863 1875 4.835678 ACGGTTTACCAAATCTACGGAAT 58.164 39.130 0.00 0.00 35.14 3.01
912 1924 0.240945 GGACACGGAAACATGGCAAG 59.759 55.000 0.00 0.00 0.00 4.01
1048 2129 4.465632 TTTCGCCAGTCAAGCTATAGAA 57.534 40.909 3.21 0.00 0.00 2.10
1077 2162 0.108424 ACGCAGCCTCATCTCTCAAC 60.108 55.000 0.00 0.00 0.00 3.18
1090 2175 4.292186 TCTCTCAACCAAAATCCAGAGG 57.708 45.455 0.00 0.00 0.00 3.69
1108 2193 1.314730 GGAACACTTCCCGAAGCAAA 58.685 50.000 4.34 0.00 44.30 3.68
1341 2565 2.438021 AGTCAGAGAGCTCTCCTACGAT 59.562 50.000 34.87 16.57 43.88 3.73
1347 2571 1.529438 GAGCTCTCCTACGATGTCGAG 59.471 57.143 6.43 2.65 43.02 4.04
1383 2607 4.373116 ATGGTGCGCGTCGACCTT 62.373 61.111 20.08 13.54 31.80 3.50
1411 2635 1.749258 GGGTTCAGCGGGTTCATCC 60.749 63.158 0.00 0.00 0.00 3.51
1764 3095 0.108804 CTCTGGCCAACGTCGTGTAT 60.109 55.000 7.01 0.00 0.00 2.29
1794 3125 1.098050 GAGGGCAGTTTGATTGCGAT 58.902 50.000 0.00 0.00 42.42 4.58
1825 3156 0.329596 GGTGTCCCTCAAGCCTGATT 59.670 55.000 0.00 0.00 0.00 2.57
1879 3210 3.254892 GTCAGTAAGCAGAGTTACAGCC 58.745 50.000 0.00 0.00 35.65 4.85
1889 3220 2.972713 AGAGTTACAGCCAGGTTGAAGA 59.027 45.455 10.86 0.00 0.00 2.87
1937 3268 3.771577 AATCAGACAAGTTCTTCGGGT 57.228 42.857 0.00 0.00 28.96 5.28
2016 4271 9.630098 TTTGCTTTGTTTTGCAATTTGAATTTA 57.370 22.222 0.00 0.00 46.55 1.40
2073 5341 1.551329 CCCTAGGCTTAGCTAGAGGGG 60.551 61.905 22.30 14.90 37.78 4.79
2078 5346 2.046009 GCTTAGCTAGAGGGGTGGCC 62.046 65.000 0.00 0.00 0.00 5.36
2089 5357 2.616458 GGGTGGCCTGATTGAGGGT 61.616 63.158 3.32 0.00 43.07 4.34
2093 5361 2.679716 GCCTGATTGAGGGTGCCT 59.320 61.111 0.00 0.00 43.07 4.75
2110 5378 0.890683 CCTCTTTGCGCTCCCATTTT 59.109 50.000 9.73 0.00 0.00 1.82
2122 5390 1.721691 TCCCATTTTCCAATCCCTGGT 59.278 47.619 0.00 0.00 46.51 4.00
2131 5399 1.064685 CCAATCCCTGGTAGTCCCAAC 60.065 57.143 0.00 0.00 44.65 3.77
2138 5406 0.398696 TGGTAGTCCCAACGCACAAT 59.601 50.000 0.00 0.00 41.50 2.71
2168 5436 5.410355 TTTTAGCAACATACGTACTCCCT 57.590 39.130 0.00 0.00 0.00 4.20
2169 5437 4.644103 TTAGCAACATACGTACTCCCTC 57.356 45.455 0.00 0.00 0.00 4.30
2170 5438 1.755380 AGCAACATACGTACTCCCTCC 59.245 52.381 0.00 0.00 0.00 4.30
2171 5439 1.479323 GCAACATACGTACTCCCTCCA 59.521 52.381 0.00 0.00 0.00 3.86
2172 5440 2.102588 GCAACATACGTACTCCCTCCAT 59.897 50.000 0.00 0.00 0.00 3.41
2173 5441 3.319972 GCAACATACGTACTCCCTCCATA 59.680 47.826 0.00 0.00 0.00 2.74
2174 5442 4.202182 GCAACATACGTACTCCCTCCATAA 60.202 45.833 0.00 0.00 0.00 1.90
2175 5443 5.682990 GCAACATACGTACTCCCTCCATAAA 60.683 44.000 0.00 0.00 0.00 1.40
2176 5444 5.526506 ACATACGTACTCCCTCCATAAAC 57.473 43.478 0.00 0.00 0.00 2.01
2177 5445 4.957954 ACATACGTACTCCCTCCATAAACA 59.042 41.667 0.00 0.00 0.00 2.83
2178 5446 5.422970 ACATACGTACTCCCTCCATAAACAA 59.577 40.000 0.00 0.00 0.00 2.83
2179 5447 4.895668 ACGTACTCCCTCCATAAACAAA 57.104 40.909 0.00 0.00 0.00 2.83
2180 5448 5.431179 ACGTACTCCCTCCATAAACAAAT 57.569 39.130 0.00 0.00 0.00 2.32
2181 5449 6.549433 ACGTACTCCCTCCATAAACAAATA 57.451 37.500 0.00 0.00 0.00 1.40
2182 5450 7.133133 ACGTACTCCCTCCATAAACAAATAT 57.867 36.000 0.00 0.00 0.00 1.28
2183 5451 8.253867 ACGTACTCCCTCCATAAACAAATATA 57.746 34.615 0.00 0.00 0.00 0.86
2184 5452 8.707449 ACGTACTCCCTCCATAAACAAATATAA 58.293 33.333 0.00 0.00 0.00 0.98
2185 5453 9.204570 CGTACTCCCTCCATAAACAAATATAAG 57.795 37.037 0.00 0.00 0.00 1.73
2188 5456 9.004231 ACTCCCTCCATAAACAAATATAAGAGT 57.996 33.333 0.00 0.00 0.00 3.24
2189 5457 9.277783 CTCCCTCCATAAACAAATATAAGAGTG 57.722 37.037 0.00 0.00 0.00 3.51
2190 5458 8.778059 TCCCTCCATAAACAAATATAAGAGTGT 58.222 33.333 0.00 0.00 0.00 3.55
2191 5459 9.408648 CCCTCCATAAACAAATATAAGAGTGTT 57.591 33.333 0.00 0.00 35.77 3.32
2208 5476 7.836479 AGAGTGTTTAGGTCACTACTTTAGT 57.164 36.000 0.00 0.00 44.68 2.24
2209 5477 8.930846 AGAGTGTTTAGGTCACTACTTTAGTA 57.069 34.615 0.00 0.00 44.68 1.82
2210 5478 9.359653 AGAGTGTTTAGGTCACTACTTTAGTAA 57.640 33.333 0.00 0.00 44.68 2.24
2212 5480 9.924650 AGTGTTTAGGTCACTACTTTAGTAATG 57.075 33.333 0.00 0.00 43.17 1.90
2213 5481 9.702494 GTGTTTAGGTCACTACTTTAGTAATGT 57.298 33.333 6.65 6.65 37.23 2.71
2218 5486 8.976986 AGGTCACTACTTTAGTAATGTAAACG 57.023 34.615 9.26 2.60 37.23 3.60
2219 5487 7.543520 AGGTCACTACTTTAGTAATGTAAACGC 59.456 37.037 9.26 2.76 37.23 4.84
2220 5488 7.543520 GGTCACTACTTTAGTAATGTAAACGCT 59.456 37.037 9.26 0.00 37.23 5.07
2221 5489 8.582096 GTCACTACTTTAGTAATGTAAACGCTC 58.418 37.037 9.26 0.00 37.23 5.03
2222 5490 8.517878 TCACTACTTTAGTAATGTAAACGCTCT 58.482 33.333 9.26 0.00 37.23 4.09
2223 5491 9.136952 CACTACTTTAGTAATGTAAACGCTCTT 57.863 33.333 9.26 0.00 37.23 2.85
2240 5508 7.772332 ACGCTCTTATATTTGTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
2241 5509 6.761714 ACGCTCTTATATTTGTTTACAGAGGG 59.238 38.462 8.36 8.36 38.95 4.30
2242 5510 6.984474 CGCTCTTATATTTGTTTACAGAGGGA 59.016 38.462 4.76 0.00 36.40 4.20
2243 5511 7.169982 CGCTCTTATATTTGTTTACAGAGGGAG 59.830 40.741 4.76 0.00 36.40 4.30
2244 5512 7.988028 GCTCTTATATTTGTTTACAGAGGGAGT 59.012 37.037 0.00 0.00 0.00 3.85
2251 5519 5.818678 TGTTTACAGAGGGAGTACATGTT 57.181 39.130 2.30 0.00 0.00 2.71
2257 5525 8.834004 TTACAGAGGGAGTACATGTTAAGTAT 57.166 34.615 2.30 0.00 0.00 2.12
2273 5549 8.375608 TGTTAAGTATTTTACCTACGTGCAAA 57.624 30.769 0.00 0.00 0.00 3.68
2289 5565 6.734137 ACGTGCAAACTTTCATGAAGAAATA 58.266 32.000 8.41 0.00 44.75 1.40
2323 5599 5.175673 GTGGACAACTGATTTTGCTTTTAGC 59.824 40.000 0.00 0.00 42.82 3.09
2347 5623 4.463879 CCAGAGGCCAGAGCACCG 62.464 72.222 5.01 0.00 42.56 4.94
2362 5638 1.529826 GCACCGCGAATGTCATTTCTC 60.530 52.381 8.23 0.00 0.00 2.87
2368 5644 3.725895 CGCGAATGTCATTTCTCCACAAG 60.726 47.826 0.00 0.00 0.00 3.16
2369 5645 3.751621 CGAATGTCATTTCTCCACAAGC 58.248 45.455 0.00 0.00 0.00 4.01
2373 5649 5.796424 ATGTCATTTCTCCACAAGCTTTT 57.204 34.783 0.00 0.00 0.00 2.27
2374 5650 4.935702 TGTCATTTCTCCACAAGCTTTTG 58.064 39.130 5.59 5.59 0.00 2.44
2395 5671 2.222596 GCTCTCGTAAAACATGACTGCG 60.223 50.000 0.00 0.00 0.00 5.18
2496 5772 9.567848 GATAACTGAAAAGTGTTGAGTTGAAAA 57.432 29.630 8.05 0.00 0.00 2.29
2504 5780 4.081752 AGTGTTGAGTTGAAAAACCATGCA 60.082 37.500 0.00 0.00 0.00 3.96
2583 5859 6.723977 AGTAAATGAGGCAATTAAACAGGGAA 59.276 34.615 0.00 0.00 0.00 3.97
2589 5865 3.367395 GGCAATTAAACAGGGAAGAGTGC 60.367 47.826 0.00 0.00 0.00 4.40
2692 5968 9.720769 CCCTTTACTTTCTAGTTGATAACTCAA 57.279 33.333 0.00 0.00 41.77 3.02
2733 6010 7.701539 TTCTAACATGGTGCTACAAATTCAT 57.298 32.000 0.00 0.00 0.00 2.57
2791 6068 3.942829 TCAGCTTGGAACTGTATCAAGG 58.057 45.455 18.28 8.18 38.52 3.61
2803 6080 7.147949 GGAACTGTATCAAGGCTGTACTAGTTA 60.148 40.741 0.00 0.00 0.00 2.24
2846 6123 6.260050 AGAGTAATCACAACAACACGAATTGT 59.740 34.615 3.67 3.67 44.76 2.71
2982 6259 1.171308 CTTGCCATGTGGAACTGAGG 58.829 55.000 2.55 0.00 38.04 3.86
3069 6346 6.088824 CAGCCTATTGTCTCACAAATCAAAC 58.911 40.000 0.00 0.00 41.96 2.93
3102 6379 2.582052 TGGGACACTGTGAACAAATCC 58.418 47.619 15.86 9.43 0.00 3.01
3140 6417 5.945310 TGAGAAATTCCCCAATATGGAGAG 58.055 41.667 0.00 0.00 40.96 3.20
3567 7275 4.645535 TGTCACTTTCTATGCTGAGCTTT 58.354 39.130 5.83 0.00 0.00 3.51
3610 7318 7.617041 ATCATCTTTCCTAGTGCTACAAAAC 57.383 36.000 0.00 0.00 0.00 2.43
3640 7348 4.913924 CGCCTCTTTCAAGATTTCAAGTTG 59.086 41.667 0.00 0.00 33.93 3.16
3937 7935 5.129980 TCTCTACAGGTTCTATCTACCGTCA 59.870 44.000 0.00 0.00 40.69 4.35
4007 8005 8.817092 TCGGATATGAGGGTTCTTAAAATTTT 57.183 30.769 8.75 8.75 0.00 1.82
4368 8474 6.597672 TCGGTACTGATCATGCAAACTTTAAT 59.402 34.615 0.00 0.00 0.00 1.40
4465 8571 3.887621 CCCTCGAGGTTACATTTCAGA 57.112 47.619 29.25 0.00 0.00 3.27
4791 8897 5.411669 ACGATCCAAGTTAGTGTTCCATTTC 59.588 40.000 0.00 0.00 0.00 2.17
4792 8898 5.643777 CGATCCAAGTTAGTGTTCCATTTCT 59.356 40.000 0.00 0.00 0.00 2.52
4815 8921 9.457436 TTCTTTACTTATTCCTACAATGTTCCC 57.543 33.333 0.00 0.00 0.00 3.97
4816 8922 8.832735 TCTTTACTTATTCCTACAATGTTCCCT 58.167 33.333 0.00 0.00 0.00 4.20
4817 8923 9.462606 CTTTACTTATTCCTACAATGTTCCCTT 57.537 33.333 0.00 0.00 0.00 3.95
4818 8924 9.816787 TTTACTTATTCCTACAATGTTCCCTTT 57.183 29.630 0.00 0.00 0.00 3.11
4819 8925 9.816787 TTACTTATTCCTACAATGTTCCCTTTT 57.183 29.630 0.00 0.00 0.00 2.27
4820 8926 8.349568 ACTTATTCCTACAATGTTCCCTTTTC 57.650 34.615 0.00 0.00 0.00 2.29
4821 8927 7.947890 ACTTATTCCTACAATGTTCCCTTTTCA 59.052 33.333 0.00 0.00 0.00 2.69
4822 8928 8.893563 TTATTCCTACAATGTTCCCTTTTCAT 57.106 30.769 0.00 0.00 0.00 2.57
4823 8929 6.834168 TTCCTACAATGTTCCCTTTTCATC 57.166 37.500 0.00 0.00 0.00 2.92
4824 8930 5.886609 TCCTACAATGTTCCCTTTTCATCA 58.113 37.500 0.00 0.00 0.00 3.07
4825 8931 5.710099 TCCTACAATGTTCCCTTTTCATCAC 59.290 40.000 0.00 0.00 0.00 3.06
4826 8932 4.871933 ACAATGTTCCCTTTTCATCACC 57.128 40.909 0.00 0.00 0.00 4.02
4827 8933 4.482990 ACAATGTTCCCTTTTCATCACCT 58.517 39.130 0.00 0.00 0.00 4.00
4828 8934 4.281688 ACAATGTTCCCTTTTCATCACCTG 59.718 41.667 0.00 0.00 0.00 4.00
4947 9089 4.724074 TGTTGCATCTGATCCATTTTCC 57.276 40.909 0.00 0.00 0.00 3.13
5051 9195 7.172190 CCTGCTCATTACAATACTGTTCATAGG 59.828 40.741 0.00 0.00 36.96 2.57
5120 9266 6.539649 TTATCCAACTTCGAGAAAACACAG 57.460 37.500 0.00 0.00 0.00 3.66
5136 9286 3.081061 ACACAGACAAACACACACATGT 58.919 40.909 0.00 0.00 40.80 3.21
5138 9288 4.881273 ACACAGACAAACACACACATGTAT 59.119 37.500 0.00 0.00 36.72 2.29
5250 9401 6.093633 GTGGGTAGATAAACTCAATGGTTGTC 59.906 42.308 0.00 0.00 34.25 3.18
5314 9469 2.646930 TCACCCTTGATGATCACATGC 58.353 47.619 0.00 0.00 36.82 4.06
5451 9606 6.144078 AGCTTTTTCTTCATTACGGTGTTT 57.856 33.333 0.00 0.00 0.00 2.83
5831 9988 3.399330 TGGTAGTCTTCTCGCCAAAAAG 58.601 45.455 0.00 0.00 0.00 2.27
5979 10137 8.462016 TCTCCTAATTTGAGAAAAATAAGCAGC 58.538 33.333 5.22 0.00 35.98 5.25
6027 10196 2.893489 GGCCAAGGATATGGTCAAATCC 59.107 50.000 0.00 0.00 44.70 3.01
6282 10461 7.793948 ACTGAACTACACCCTCTTTTATACT 57.206 36.000 0.00 0.00 0.00 2.12
6283 10462 7.838884 ACTGAACTACACCCTCTTTTATACTC 58.161 38.462 0.00 0.00 0.00 2.59
6284 10463 7.093421 ACTGAACTACACCCTCTTTTATACTCC 60.093 40.741 0.00 0.00 0.00 3.85
6285 10464 6.155737 TGAACTACACCCTCTTTTATACTCCC 59.844 42.308 0.00 0.00 0.00 4.30
6286 10465 5.851418 ACTACACCCTCTTTTATACTCCCT 58.149 41.667 0.00 0.00 0.00 4.20
6287 10466 5.898397 ACTACACCCTCTTTTATACTCCCTC 59.102 44.000 0.00 0.00 0.00 4.30
6288 10467 4.038633 ACACCCTCTTTTATACTCCCTCC 58.961 47.826 0.00 0.00 0.00 4.30
6290 10469 2.037381 CCCTCTTTTATACTCCCTCCGC 59.963 54.545 0.00 0.00 0.00 5.54
6291 10470 2.037381 CCTCTTTTATACTCCCTCCGCC 59.963 54.545 0.00 0.00 0.00 6.13
6293 10472 1.071857 CTTTTATACTCCCTCCGCCCC 59.928 57.143 0.00 0.00 0.00 5.80
6294 10473 0.030909 TTTATACTCCCTCCGCCCCA 60.031 55.000 0.00 0.00 0.00 4.96
6296 10475 0.030909 TATACTCCCTCCGCCCCAAA 60.031 55.000 0.00 0.00 0.00 3.28
6297 10476 0.917333 ATACTCCCTCCGCCCCAAAA 60.917 55.000 0.00 0.00 0.00 2.44
6298 10477 0.917333 TACTCCCTCCGCCCCAAAAT 60.917 55.000 0.00 0.00 0.00 1.82
6299 10478 0.917333 ACTCCCTCCGCCCCAAAATA 60.917 55.000 0.00 0.00 0.00 1.40
6300 10479 0.257616 CTCCCTCCGCCCCAAAATAA 59.742 55.000 0.00 0.00 0.00 1.40
6301 10480 0.257616 TCCCTCCGCCCCAAAATAAG 59.742 55.000 0.00 0.00 0.00 1.73
6302 10481 0.033503 CCCTCCGCCCCAAAATAAGT 60.034 55.000 0.00 0.00 0.00 2.24
6303 10482 1.102978 CCTCCGCCCCAAAATAAGTG 58.897 55.000 0.00 0.00 0.00 3.16
6304 10483 1.615919 CCTCCGCCCCAAAATAAGTGT 60.616 52.381 0.00 0.00 0.00 3.55
6305 10484 1.743394 CTCCGCCCCAAAATAAGTGTC 59.257 52.381 0.00 0.00 0.00 3.67
6306 10485 1.353022 TCCGCCCCAAAATAAGTGTCT 59.647 47.619 0.00 0.00 0.00 3.41
6307 10486 1.743394 CCGCCCCAAAATAAGTGTCTC 59.257 52.381 0.00 0.00 0.00 3.36
6308 10487 2.432444 CGCCCCAAAATAAGTGTCTCA 58.568 47.619 0.00 0.00 0.00 3.27
6309 10488 2.817258 CGCCCCAAAATAAGTGTCTCAA 59.183 45.455 0.00 0.00 0.00 3.02
6310 10489 3.365969 CGCCCCAAAATAAGTGTCTCAAC 60.366 47.826 0.00 0.00 0.00 3.18
6311 10490 3.826729 GCCCCAAAATAAGTGTCTCAACT 59.173 43.478 0.00 0.00 0.00 3.16
6312 10491 4.280929 GCCCCAAAATAAGTGTCTCAACTT 59.719 41.667 0.00 0.00 42.89 2.66
6313 10492 5.221441 GCCCCAAAATAAGTGTCTCAACTTT 60.221 40.000 0.00 0.00 40.77 2.66
6314 10493 6.215845 CCCCAAAATAAGTGTCTCAACTTTG 58.784 40.000 0.00 0.00 40.77 2.77
6315 10494 6.183360 CCCCAAAATAAGTGTCTCAACTTTGT 60.183 38.462 0.00 0.00 40.77 2.83
6316 10495 7.013846 CCCCAAAATAAGTGTCTCAACTTTGTA 59.986 37.037 0.00 0.00 40.77 2.41
6317 10496 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
6318 10497 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
6321 10500 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
6322 10501 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
6323 10502 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
6324 10503 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
6325 10504 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
6326 10505 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
6328 10507 7.024768 GTCTCAACTTTGTACTAGCTCTAGTG 58.975 42.308 17.32 5.17 45.25 2.74
6329 10508 6.715718 TCTCAACTTTGTACTAGCTCTAGTGT 59.284 38.462 17.32 5.72 45.25 3.55
6330 10509 7.881751 TCTCAACTTTGTACTAGCTCTAGTGTA 59.118 37.037 17.32 5.66 45.25 2.90
6331 10510 8.400184 TCAACTTTGTACTAGCTCTAGTGTAA 57.600 34.615 17.32 10.37 45.25 2.41
6332 10511 8.512956 TCAACTTTGTACTAGCTCTAGTGTAAG 58.487 37.037 17.32 17.04 45.25 2.34
6333 10512 7.999450 ACTTTGTACTAGCTCTAGTGTAAGT 57.001 36.000 17.32 17.50 45.25 2.24
6334 10513 8.406730 ACTTTGTACTAGCTCTAGTGTAAGTT 57.593 34.615 17.32 7.69 45.25 2.66
6335 10514 8.858094 ACTTTGTACTAGCTCTAGTGTAAGTTT 58.142 33.333 17.32 3.75 45.25 2.66
6336 10515 9.130312 CTTTGTACTAGCTCTAGTGTAAGTTTG 57.870 37.037 17.32 0.50 45.25 2.93
6337 10516 7.756395 TGTACTAGCTCTAGTGTAAGTTTGT 57.244 36.000 17.32 0.00 45.25 2.83
6338 10517 8.853077 TGTACTAGCTCTAGTGTAAGTTTGTA 57.147 34.615 17.32 0.00 45.25 2.41
6339 10518 8.725148 TGTACTAGCTCTAGTGTAAGTTTGTAC 58.275 37.037 17.32 4.49 45.25 2.90
6340 10519 7.999450 ACTAGCTCTAGTGTAAGTTTGTACT 57.001 36.000 8.64 0.00 44.11 2.73
6342 10521 9.512588 ACTAGCTCTAGTGTAAGTTTGTACTAA 57.487 33.333 8.64 0.00 44.11 2.24
6343 10522 9.991388 CTAGCTCTAGTGTAAGTTTGTACTAAG 57.009 37.037 0.00 0.00 33.17 2.18
6344 10523 7.314393 AGCTCTAGTGTAAGTTTGTACTAAGC 58.686 38.462 0.00 0.00 34.17 3.09
6345 10524 7.177041 AGCTCTAGTGTAAGTTTGTACTAAGCT 59.823 37.037 0.00 0.00 36.48 3.74
6346 10525 7.485595 GCTCTAGTGTAAGTTTGTACTAAGCTC 59.514 40.741 0.00 0.00 33.17 4.09
6347 10526 8.400184 TCTAGTGTAAGTTTGTACTAAGCTCA 57.600 34.615 0.00 0.00 33.17 4.26
6348 10527 8.853126 TCTAGTGTAAGTTTGTACTAAGCTCAA 58.147 33.333 0.00 0.00 33.17 3.02
6349 10528 7.948278 AGTGTAAGTTTGTACTAAGCTCAAG 57.052 36.000 0.00 0.00 33.17 3.02
6350 10529 7.723324 AGTGTAAGTTTGTACTAAGCTCAAGA 58.277 34.615 3.19 0.00 33.17 3.02
6351 10530 7.652507 AGTGTAAGTTTGTACTAAGCTCAAGAC 59.347 37.037 3.19 0.00 33.17 3.01
6352 10531 7.437267 GTGTAAGTTTGTACTAAGCTCAAGACA 59.563 37.037 3.19 0.00 33.17 3.41
6353 10532 6.846325 AAGTTTGTACTAAGCTCAAGACAC 57.154 37.500 3.19 2.09 33.17 3.67
6354 10533 6.163135 AGTTTGTACTAAGCTCAAGACACT 57.837 37.500 3.19 0.00 31.21 3.55
6355 10534 6.583562 AGTTTGTACTAAGCTCAAGACACTT 58.416 36.000 3.19 0.00 31.21 3.16
6356 10535 7.723324 AGTTTGTACTAAGCTCAAGACACTTA 58.277 34.615 3.19 0.00 31.21 2.24
6357 10536 8.368668 AGTTTGTACTAAGCTCAAGACACTTAT 58.631 33.333 3.19 0.00 31.21 1.73
6358 10537 8.989980 GTTTGTACTAAGCTCAAGACACTTATT 58.010 33.333 3.19 0.00 0.00 1.40
6359 10538 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
6360 10539 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
6361 10540 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
6362 10541 9.204570 GTACTAAGCTCAAGACACTTATTTTGA 57.795 33.333 3.19 0.00 0.00 2.69
6363 10542 8.316640 ACTAAGCTCAAGACACTTATTTTGAG 57.683 34.615 8.33 8.33 45.75 3.02
6364 10543 8.150945 ACTAAGCTCAAGACACTTATTTTGAGA 58.849 33.333 15.10 0.00 45.82 3.27
6365 10544 6.793492 AGCTCAAGACACTTATTTTGAGAC 57.207 37.500 15.10 7.85 45.82 3.36
6366 10545 6.291377 AGCTCAAGACACTTATTTTGAGACA 58.709 36.000 15.10 0.00 45.82 3.41
6367 10546 6.426328 AGCTCAAGACACTTATTTTGAGACAG 59.574 38.462 15.10 0.00 45.82 3.51
6368 10547 6.425114 GCTCAAGACACTTATTTTGAGACAGA 59.575 38.462 15.10 0.00 45.82 3.41
6369 10548 7.359933 GCTCAAGACACTTATTTTGAGACAGAG 60.360 40.741 15.10 0.00 45.82 3.35
6370 10549 6.931281 TCAAGACACTTATTTTGAGACAGAGG 59.069 38.462 0.00 0.00 0.00 3.69
6371 10550 5.799213 AGACACTTATTTTGAGACAGAGGG 58.201 41.667 0.00 0.00 0.00 4.30
6372 10551 5.544176 AGACACTTATTTTGAGACAGAGGGA 59.456 40.000 0.00 0.00 0.00 4.20
6373 10552 5.799213 ACACTTATTTTGAGACAGAGGGAG 58.201 41.667 0.00 0.00 0.00 4.30
6385 10564 7.411808 TGAGACAGAGGGAGTATTAGTTTACT 58.588 38.462 0.00 0.00 35.13 2.24
6386 10565 7.339721 TGAGACAGAGGGAGTATTAGTTTACTG 59.660 40.741 0.00 0.00 32.59 2.74
6387 10566 6.608002 AGACAGAGGGAGTATTAGTTTACTGG 59.392 42.308 0.00 0.00 32.59 4.00
6534 10719 0.844660 GACCCTGGGGAGGAAATACC 59.155 60.000 18.88 0.00 38.96 2.73
6559 10744 5.469084 GGGAGAAAACGAGACATAAAAGTGT 59.531 40.000 0.00 0.00 34.39 3.55
6580 10765 6.432162 AGTGTCACCACGTTATCTAAGAAGTA 59.568 38.462 0.00 0.00 46.56 2.24
6669 10854 0.329596 ATGAGACACCTCTTTGGGGC 59.670 55.000 0.00 0.00 45.20 5.80
6673 10858 1.833787 GACACCTCTTTGGGGCGGTA 61.834 60.000 0.00 0.00 45.20 4.02
6743 10928 5.062934 GTGCAAAACCTTGTTAAGACAAACC 59.937 40.000 0.00 0.00 44.65 3.27
6795 10980 8.556194 GCGACACAGGAATATCATTTTTATACA 58.444 33.333 0.00 0.00 0.00 2.29
6927 11131 7.939784 AAGAATGGGAAGTGGTTCTTTATAC 57.060 36.000 0.00 0.00 36.40 1.47
7008 11212 5.083533 TGTGTGCCCAAATTCCAAATATC 57.916 39.130 0.00 0.00 0.00 1.63
7672 12855 3.270960 AGTTTCCATACCCCAAATAGCCA 59.729 43.478 0.00 0.00 0.00 4.75
7700 12883 4.343231 TGCTGCAGGAAAAGGATCATTTA 58.657 39.130 17.12 0.00 0.00 1.40
7827 13010 0.472471 ATCCAAACCAGGACACACGT 59.528 50.000 0.00 0.00 41.30 4.49
7981 13188 0.839946 GAGGGGCTTTATCCTGCTGA 59.160 55.000 0.00 0.00 32.74 4.26
7982 13189 1.212935 GAGGGGCTTTATCCTGCTGAA 59.787 52.381 0.00 0.00 32.74 3.02
8012 13219 1.392168 CATACGCGTGTTGGTAAGTGG 59.608 52.381 24.59 0.00 0.00 4.00
8324 13531 3.520402 CCCCCACACACACACAAC 58.480 61.111 0.00 0.00 0.00 3.32
8329 13536 0.451383 CCACACACACACAACACCAG 59.549 55.000 0.00 0.00 0.00 4.00
8331 13538 1.398041 CACACACACACAACACCAGAG 59.602 52.381 0.00 0.00 0.00 3.35
8333 13540 0.253044 ACACACACAACACCAGAGCT 59.747 50.000 0.00 0.00 0.00 4.09
8334 13541 0.659427 CACACACAACACCAGAGCTG 59.341 55.000 0.00 0.00 0.00 4.24
8343 13550 4.514577 CCAGAGCTGGCGGTACCG 62.515 72.222 30.06 30.06 44.73 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.206831 CGCTCTCACTCGACGTCAA 59.793 57.895 17.16 0.00 0.00 3.18
59 60 1.127582 GACGACAGCTCATTCAGTTGC 59.872 52.381 0.00 0.00 36.82 4.17
60 61 2.407090 TGACGACAGCTCATTCAGTTG 58.593 47.619 0.00 0.00 39.24 3.16
61 62 2.802816 GTTGACGACAGCTCATTCAGTT 59.197 45.455 0.00 0.00 0.00 3.16
62 63 2.224042 TGTTGACGACAGCTCATTCAGT 60.224 45.455 3.32 0.00 33.40 3.41
63 64 2.156504 GTGTTGACGACAGCTCATTCAG 59.843 50.000 3.32 0.00 39.39 3.02
64 65 2.135139 GTGTTGACGACAGCTCATTCA 58.865 47.619 3.32 0.00 39.39 2.57
65 66 2.863658 GTGTTGACGACAGCTCATTC 57.136 50.000 3.32 0.00 39.39 2.67
80 81 2.091885 AGTGATCCAAAGTGGTGGTGTT 60.092 45.455 0.00 0.00 39.03 3.32
97 98 2.147958 GCAACCGTTAATGGTCAGTGA 58.852 47.619 19.69 0.00 42.89 3.41
101 102 2.208132 ATGGCAACCGTTAATGGTCA 57.792 45.000 19.69 13.61 42.89 4.02
165 166 8.037758 TGGCAAAAAGAACTGACAAAAATTCTA 58.962 29.630 0.00 0.00 31.20 2.10
187 188 1.151221 ATTGACAGTGGCAGTGGCA 59.849 52.632 26.70 26.70 43.71 4.92
188 189 0.890542 TCATTGACAGTGGCAGTGGC 60.891 55.000 25.12 23.43 40.13 5.01
189 190 1.830279 ATCATTGACAGTGGCAGTGG 58.170 50.000 25.12 8.09 0.00 4.00
247 249 6.531240 ACAATCATGTCACAACTCACAAAAAC 59.469 34.615 0.00 0.00 33.41 2.43
307 1219 6.887013 AGGAGAAGAGTGTCGTATTAGTCTA 58.113 40.000 0.00 0.00 0.00 2.59
459 1372 4.561500 TCGTGTTTTGATCCCAATCCTA 57.438 40.909 0.00 0.00 31.46 2.94
516 1429 8.604890 CCTCTTAAGACGATTCATAACTTTTCC 58.395 37.037 0.00 0.00 0.00 3.13
547 1466 3.311702 ACACTCCCATCTTCCCTCCTAAT 60.312 47.826 0.00 0.00 0.00 1.73
548 1467 2.045885 ACACTCCCATCTTCCCTCCTAA 59.954 50.000 0.00 0.00 0.00 2.69
549 1468 1.651770 ACACTCCCATCTTCCCTCCTA 59.348 52.381 0.00 0.00 0.00 2.94
550 1469 0.419459 ACACTCCCATCTTCCCTCCT 59.581 55.000 0.00 0.00 0.00 3.69
770 1780 4.437682 ACAAGACAAACCATGGAGAGAA 57.562 40.909 21.47 0.00 0.00 2.87
771 1781 4.593206 AGTACAAGACAAACCATGGAGAGA 59.407 41.667 21.47 0.00 0.00 3.10
802 1814 5.670792 TGACTAATCACCCGTGTTAGAAT 57.329 39.130 16.88 3.82 33.06 2.40
863 1875 1.702401 TGGTGTGGCTGGTCAATTAGA 59.298 47.619 0.00 0.00 0.00 2.10
912 1924 7.307160 GCAGGTTTGGTTAAGTTTTCTTATTGC 60.307 37.037 0.00 0.00 41.33 3.56
1048 2129 5.186198 AGATGAGGCTGCGTTAGTAAATTT 58.814 37.500 0.00 0.00 0.00 1.82
1077 2162 3.507622 GGAAGTGTTCCTCTGGATTTTGG 59.492 47.826 0.00 0.00 46.57 3.28
1090 2175 3.004315 TGATTTTGCTTCGGGAAGTGTTC 59.996 43.478 9.92 2.50 40.45 3.18
1099 2184 2.094675 ACCTCCATGATTTTGCTTCGG 58.905 47.619 0.00 0.00 0.00 4.30
1341 2565 3.996614 TCGATGCTGTCCTCGACA 58.003 55.556 0.00 0.00 40.50 4.35
1347 2571 0.037326 TGAACCTGTCGATGCTGTCC 60.037 55.000 0.00 0.00 0.00 4.02
1383 2607 1.526887 GCTGAACCCCGGATGATGA 59.473 57.895 0.73 0.00 0.00 2.92
1515 2739 1.580845 CGTCGTCGACCCTGTACCTT 61.581 60.000 19.29 0.00 39.71 3.50
1560 2784 0.744874 CGATGTCGATGGTGGTACCT 59.255 55.000 14.36 0.00 43.02 3.08
1764 3095 0.616964 ACTGCCCTCTGATCTGCTGA 60.617 55.000 0.00 0.00 0.00 4.26
1794 3125 1.525077 GGACACCGTGACAAAGGCA 60.525 57.895 5.28 0.00 0.00 4.75
1825 3156 1.271926 GCTGGCTAAAACCCTCCTCAA 60.272 52.381 0.00 0.00 0.00 3.02
1879 3210 3.828451 ACAACATCCCATTCTTCAACCTG 59.172 43.478 0.00 0.00 0.00 4.00
1889 3220 5.484644 TCAATGATTTCCACAACATCCCATT 59.515 36.000 0.00 0.00 0.00 3.16
1937 3268 4.706035 TGAGTTTTGGCGTTACCTCTTAA 58.294 39.130 0.00 0.00 40.22 1.85
2016 4271 9.490379 CAGTATTAACCTTGTACTTCAGTTCTT 57.510 33.333 0.00 0.00 0.00 2.52
2040 5301 2.757313 CTAGGGGAGGAGGATGCAG 58.243 63.158 0.00 0.00 0.00 4.41
2073 5341 2.048603 GCACCCTCAATCAGGCCAC 61.049 63.158 5.01 0.00 41.80 5.01
2089 5357 2.769652 AATGGGAGCGCAAAGAGGCA 62.770 55.000 11.47 0.00 0.00 4.75
2093 5361 0.887933 GGAAAATGGGAGCGCAAAGA 59.112 50.000 11.47 0.00 0.00 2.52
2100 5368 1.758862 CAGGGATTGGAAAATGGGAGC 59.241 52.381 0.00 0.00 0.00 4.70
2122 5390 2.811431 CAAAGATTGTGCGTTGGGACTA 59.189 45.455 0.00 0.00 35.23 2.59
2162 5430 9.004231 ACTCTTATATTTGTTTATGGAGGGAGT 57.996 33.333 0.00 0.00 0.00 3.85
2163 5431 9.277783 CACTCTTATATTTGTTTATGGAGGGAG 57.722 37.037 0.00 0.00 0.00 4.30
2164 5432 8.778059 ACACTCTTATATTTGTTTATGGAGGGA 58.222 33.333 0.00 0.00 0.00 4.20
2165 5433 8.980481 ACACTCTTATATTTGTTTATGGAGGG 57.020 34.615 0.00 0.00 0.00 4.30
2182 5450 9.359653 ACTAAAGTAGTGACCTAAACACTCTTA 57.640 33.333 0.00 0.00 45.58 2.10
2183 5451 8.247666 ACTAAAGTAGTGACCTAAACACTCTT 57.752 34.615 0.00 0.00 45.58 2.85
2184 5452 7.836479 ACTAAAGTAGTGACCTAAACACTCT 57.164 36.000 0.00 0.00 45.58 3.24
2187 5455 9.702494 ACATTACTAAAGTAGTGACCTAAACAC 57.298 33.333 16.70 0.00 39.63 3.32
2193 5461 7.543520 GCGTTTACATTACTAAAGTAGTGACCT 59.456 37.037 16.70 1.08 39.63 3.85
2194 5462 7.543520 AGCGTTTACATTACTAAAGTAGTGACC 59.456 37.037 16.70 3.85 39.63 4.02
2195 5463 8.458212 AGCGTTTACATTACTAAAGTAGTGAC 57.542 34.615 16.70 6.36 39.63 3.67
2196 5464 8.517878 AGAGCGTTTACATTACTAAAGTAGTGA 58.482 33.333 16.70 0.00 39.63 3.41
2197 5465 8.684973 AGAGCGTTTACATTACTAAAGTAGTG 57.315 34.615 10.18 10.18 41.96 2.74
2214 5482 8.665685 CCTCTGTAAACAAATATAAGAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
2215 5483 7.280205 CCCTCTGTAAACAAATATAAGAGCGTT 59.720 37.037 0.00 0.00 0.00 4.84
2216 5484 6.761714 CCCTCTGTAAACAAATATAAGAGCGT 59.238 38.462 0.00 0.00 0.00 5.07
2217 5485 6.984474 TCCCTCTGTAAACAAATATAAGAGCG 59.016 38.462 0.00 0.00 0.00 5.03
2218 5486 7.988028 ACTCCCTCTGTAAACAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
2224 5492 8.548877 ACATGTACTCCCTCTGTAAACAAATAT 58.451 33.333 0.00 0.00 0.00 1.28
2225 5493 7.913789 ACATGTACTCCCTCTGTAAACAAATA 58.086 34.615 0.00 0.00 0.00 1.40
2226 5494 6.779860 ACATGTACTCCCTCTGTAAACAAAT 58.220 36.000 0.00 0.00 0.00 2.32
2227 5495 6.182507 ACATGTACTCCCTCTGTAAACAAA 57.817 37.500 0.00 0.00 0.00 2.83
2228 5496 5.818678 ACATGTACTCCCTCTGTAAACAA 57.181 39.130 0.00 0.00 0.00 2.83
2229 5497 5.818678 AACATGTACTCCCTCTGTAAACA 57.181 39.130 0.00 0.00 0.00 2.83
2230 5498 7.384477 ACTTAACATGTACTCCCTCTGTAAAC 58.616 38.462 0.00 0.00 0.00 2.01
2231 5499 7.549147 ACTTAACATGTACTCCCTCTGTAAA 57.451 36.000 0.00 0.00 0.00 2.01
2232 5500 8.834004 ATACTTAACATGTACTCCCTCTGTAA 57.166 34.615 0.00 0.00 0.00 2.41
2233 5501 8.834004 AATACTTAACATGTACTCCCTCTGTA 57.166 34.615 0.00 0.00 0.00 2.74
2234 5502 7.735326 AATACTTAACATGTACTCCCTCTGT 57.265 36.000 0.00 0.00 0.00 3.41
2237 5505 9.322773 GGTAAAATACTTAACATGTACTCCCTC 57.677 37.037 0.00 0.00 0.00 4.30
2238 5506 9.054580 AGGTAAAATACTTAACATGTACTCCCT 57.945 33.333 0.00 0.00 0.00 4.20
2244 5512 9.086336 GCACGTAGGTAAAATACTTAACATGTA 57.914 33.333 0.00 0.00 0.00 2.29
2251 5519 8.606040 AAGTTTGCACGTAGGTAAAATACTTA 57.394 30.769 0.00 0.00 0.00 2.24
2257 5525 5.814764 TGAAAGTTTGCACGTAGGTAAAA 57.185 34.783 0.00 0.00 0.00 1.52
2273 5549 7.325694 CCCAAATGCTATTTCTTCATGAAAGT 58.674 34.615 9.88 0.00 46.39 2.66
2289 5565 0.188342 AGTTGTCCACCCCAAATGCT 59.812 50.000 0.00 0.00 0.00 3.79
2323 5599 1.680249 GCTCTGGCCTCTGGGTAAAAG 60.680 57.143 3.32 0.00 34.45 2.27
2347 5623 3.751621 CTTGTGGAGAAATGACATTCGC 58.248 45.455 0.05 0.00 34.46 4.70
2362 5638 0.947244 ACGAGAGCAAAAGCTTGTGG 59.053 50.000 18.35 3.66 34.79 4.17
2368 5644 4.613031 GTCATGTTTTACGAGAGCAAAAGC 59.387 41.667 0.00 0.00 37.04 3.51
2369 5645 5.848036 CAGTCATGTTTTACGAGAGCAAAAG 59.152 40.000 0.00 0.00 37.04 2.27
2373 5649 2.736721 GCAGTCATGTTTTACGAGAGCA 59.263 45.455 0.00 0.00 0.00 4.26
2374 5650 2.222596 CGCAGTCATGTTTTACGAGAGC 60.223 50.000 0.00 0.00 0.00 4.09
2377 5653 2.729360 TCACGCAGTCATGTTTTACGAG 59.271 45.455 0.00 0.00 41.61 4.18
2379 5655 3.407252 CATCACGCAGTCATGTTTTACG 58.593 45.455 0.00 0.00 41.61 3.18
2395 5671 4.906065 TCAAATGGAATAGCTGCATCAC 57.094 40.909 1.02 0.00 34.48 3.06
2466 5742 7.264373 ACTCAACACTTTTCAGTTATCAAGG 57.736 36.000 0.00 0.00 0.00 3.61
2467 5743 8.397906 TCAACTCAACACTTTTCAGTTATCAAG 58.602 33.333 0.00 0.00 0.00 3.02
2481 5757 4.081752 TGCATGGTTTTTCAACTCAACACT 60.082 37.500 0.00 0.00 32.90 3.55
2526 5802 6.957920 TTGAAAATGTCAAGAATGGAGTCA 57.042 33.333 0.00 0.00 41.47 3.41
2554 5830 8.739972 CCTGTTTAATTGCCTCATTTACTAACT 58.260 33.333 0.00 0.00 0.00 2.24
2557 5833 7.406916 TCCCTGTTTAATTGCCTCATTTACTA 58.593 34.615 0.00 0.00 0.00 1.82
2564 5840 4.202567 ACTCTTCCCTGTTTAATTGCCTCA 60.203 41.667 0.00 0.00 0.00 3.86
2565 5841 4.156739 CACTCTTCCCTGTTTAATTGCCTC 59.843 45.833 0.00 0.00 0.00 4.70
2583 5859 4.210331 AGAAACATGTTTTCCAGCACTCT 58.790 39.130 24.02 11.01 32.11 3.24
2589 5865 4.935702 TGCAGAAGAAACATGTTTTCCAG 58.064 39.130 24.02 14.46 32.11 3.86
2696 5973 7.167468 GCACCATGTTAGAAAGTAAAACAAGTG 59.833 37.037 12.73 12.73 40.62 3.16
2791 6068 5.694910 TGCAGTTGTTCTTAACTAGTACAGC 59.305 40.000 0.00 0.00 38.78 4.40
2846 6123 0.038067 GCATGATGCTGCAACACCAA 60.038 50.000 14.99 0.00 40.96 3.67
2872 6149 5.910637 TTATAAATGTTACCGTCGATGGC 57.089 39.130 23.85 8.18 0.00 4.40
2908 6185 6.169094 ACAACTTCTTCGAATCATCATGACT 58.831 36.000 0.00 0.00 0.00 3.41
3069 6346 6.767423 TCACAGTGTCCCATTCATGTATATTG 59.233 38.462 0.00 0.00 0.00 1.90
3102 6379 5.972107 ATTTCTCAAGTCCAGAACCAATG 57.028 39.130 0.00 0.00 29.30 2.82
3140 6417 5.852738 AATAGACAATATCTGACGCATGC 57.147 39.130 7.91 7.91 38.49 4.06
3240 6517 5.163550 CCATCTTCGTACCAAGTGATCACTA 60.164 44.000 28.10 10.40 41.58 2.74
3567 7275 5.351948 TGATAAATGATCTCACGTGGGAA 57.648 39.130 24.28 7.34 35.37 3.97
3610 7318 0.731417 CTTGAAAGAGGCGGCATCAG 59.269 55.000 17.58 0.88 0.00 2.90
3640 7348 2.941453 TCTAGATCCAACACTCGCAC 57.059 50.000 0.00 0.00 0.00 5.34
3937 7935 2.102588 AGTTTGGCGAGTTACTCACACT 59.897 45.455 13.14 0.04 0.00 3.55
4368 8474 5.412594 GTGAATGTGAAACTCAGATAGGCAA 59.587 40.000 0.00 0.00 38.04 4.52
4791 8897 9.462606 AAGGGAACATTGTAGGAATAAGTAAAG 57.537 33.333 0.00 0.00 0.00 1.85
4792 8898 9.816787 AAAGGGAACATTGTAGGAATAAGTAAA 57.183 29.630 0.00 0.00 0.00 2.01
4804 8910 5.476599 CAGGTGATGAAAAGGGAACATTGTA 59.523 40.000 0.00 0.00 0.00 2.41
4805 8911 4.281688 CAGGTGATGAAAAGGGAACATTGT 59.718 41.667 0.00 0.00 0.00 2.71
4806 8912 4.281688 ACAGGTGATGAAAAGGGAACATTG 59.718 41.667 0.00 0.00 0.00 2.82
4807 8913 4.482990 ACAGGTGATGAAAAGGGAACATT 58.517 39.130 0.00 0.00 0.00 2.71
4808 8914 4.118168 ACAGGTGATGAAAAGGGAACAT 57.882 40.909 0.00 0.00 0.00 2.71
4809 8915 3.593442 ACAGGTGATGAAAAGGGAACA 57.407 42.857 0.00 0.00 0.00 3.18
4810 8916 6.399639 TTTTACAGGTGATGAAAAGGGAAC 57.600 37.500 0.00 0.00 0.00 3.62
4811 8917 6.553100 ACATTTTACAGGTGATGAAAAGGGAA 59.447 34.615 0.00 0.00 30.72 3.97
4812 8918 6.074648 ACATTTTACAGGTGATGAAAAGGGA 58.925 36.000 0.00 0.00 30.72 4.20
4813 8919 6.345096 ACATTTTACAGGTGATGAAAAGGG 57.655 37.500 0.00 0.00 30.72 3.95
4814 8920 6.868339 GGAACATTTTACAGGTGATGAAAAGG 59.132 38.462 0.00 0.00 31.75 3.11
4815 8921 6.868339 GGGAACATTTTACAGGTGATGAAAAG 59.132 38.462 0.00 0.00 0.00 2.27
4816 8922 6.553100 AGGGAACATTTTACAGGTGATGAAAA 59.447 34.615 0.00 0.00 0.00 2.29
4817 8923 6.074648 AGGGAACATTTTACAGGTGATGAAA 58.925 36.000 0.00 0.00 0.00 2.69
4818 8924 5.640147 AGGGAACATTTTACAGGTGATGAA 58.360 37.500 0.00 0.00 0.00 2.57
4819 8925 5.255397 AGGGAACATTTTACAGGTGATGA 57.745 39.130 0.00 0.00 0.00 2.92
4820 8926 5.982890 AAGGGAACATTTTACAGGTGATG 57.017 39.130 0.00 0.00 0.00 3.07
4821 8927 6.553100 TGAAAAGGGAACATTTTACAGGTGAT 59.447 34.615 0.00 0.00 30.22 3.06
4822 8928 5.894393 TGAAAAGGGAACATTTTACAGGTGA 59.106 36.000 0.00 0.00 30.22 4.02
4823 8929 6.155475 TGAAAAGGGAACATTTTACAGGTG 57.845 37.500 0.00 0.00 30.22 4.00
4824 8930 6.553100 TGATGAAAAGGGAACATTTTACAGGT 59.447 34.615 0.00 0.00 30.22 4.00
4825 8931 6.868339 GTGATGAAAAGGGAACATTTTACAGG 59.132 38.462 0.00 0.00 30.22 4.00
4826 8932 6.868339 GGTGATGAAAAGGGAACATTTTACAG 59.132 38.462 0.00 0.00 30.22 2.74
4827 8933 6.553100 AGGTGATGAAAAGGGAACATTTTACA 59.447 34.615 0.00 0.00 30.22 2.41
4828 8934 6.993079 AGGTGATGAAAAGGGAACATTTTAC 58.007 36.000 0.00 0.00 30.22 2.01
5051 9195 1.555075 TGGCTTGTGTCCAGATAGTCC 59.445 52.381 0.00 0.00 0.00 3.85
5120 9266 7.165154 GTGTTTACATACATGTGTGTGTTTGTC 59.835 37.037 31.41 17.85 45.99 3.18
5314 9469 4.875536 TGATTGTCAAGTATGGTCGAATGG 59.124 41.667 0.00 0.00 0.00 3.16
5401 9556 6.363088 CCGAACTTGTCAATGTAAACGTAGTA 59.637 38.462 0.00 0.00 45.00 1.82
5451 9606 9.255304 GCTCATTTGTTTGTTTTTATACAAGGA 57.745 29.630 0.00 0.00 39.06 3.36
5831 9988 4.225208 GTGGCGAGTACCGAGATATTAAC 58.775 47.826 7.77 0.00 41.76 2.01
5892 10050 8.871629 AGTATTACACCTGATCTCTCGATAAT 57.128 34.615 0.00 0.00 0.00 1.28
5960 10118 7.093377 TGGTATGGCTGCTTATTTTTCTCAAAT 60.093 33.333 0.00 0.00 0.00 2.32
5979 10137 5.665459 CTCTTCTACTCCAAGTTGGTATGG 58.335 45.833 21.35 12.46 39.03 2.74
6027 10196 0.464916 CGAACGGGGAATTAAGGGGG 60.465 60.000 0.00 0.00 0.00 5.40
6071 10240 9.588774 CAATCAAAATTTGCACTATCAAAGTTG 57.411 29.630 0.00 6.10 41.49 3.16
6227 10406 9.841295 TTTTATCAAGTATACTACATTGGGGAC 57.159 33.333 5.65 0.00 0.00 4.46
6275 10454 0.030909 TGGGGCGGAGGGAGTATAAA 60.031 55.000 0.00 0.00 0.00 1.40
6281 10460 0.257616 TTATTTTGGGGCGGAGGGAG 59.742 55.000 0.00 0.00 0.00 4.30
6282 10461 0.257616 CTTATTTTGGGGCGGAGGGA 59.742 55.000 0.00 0.00 0.00 4.20
6283 10462 0.033503 ACTTATTTTGGGGCGGAGGG 60.034 55.000 0.00 0.00 0.00 4.30
6284 10463 1.102978 CACTTATTTTGGGGCGGAGG 58.897 55.000 0.00 0.00 0.00 4.30
6285 10464 1.743394 GACACTTATTTTGGGGCGGAG 59.257 52.381 0.00 0.00 0.00 4.63
6286 10465 1.353022 AGACACTTATTTTGGGGCGGA 59.647 47.619 0.00 0.00 0.00 5.54
6287 10466 1.743394 GAGACACTTATTTTGGGGCGG 59.257 52.381 0.00 0.00 0.00 6.13
6288 10467 2.432444 TGAGACACTTATTTTGGGGCG 58.568 47.619 0.00 0.00 0.00 6.13
6290 10469 6.183360 ACAAAGTTGAGACACTTATTTTGGGG 60.183 38.462 0.00 0.00 35.87 4.96
6291 10470 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
6296 10475 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
6297 10476 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
6298 10477 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
6299 10478 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
6300 10479 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
6301 10480 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
6302 10481 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
6303 10482 7.024768 CACTAGAGCTAGTACAAAGTTGAGAC 58.975 42.308 9.66 0.00 43.98 3.36
6304 10483 6.715718 ACACTAGAGCTAGTACAAAGTTGAGA 59.284 38.462 9.66 0.00 43.98 3.27
6305 10484 6.915349 ACACTAGAGCTAGTACAAAGTTGAG 58.085 40.000 9.66 0.00 43.98 3.02
6306 10485 6.896021 ACACTAGAGCTAGTACAAAGTTGA 57.104 37.500 9.66 0.00 43.98 3.18
6307 10486 8.298140 ACTTACACTAGAGCTAGTACAAAGTTG 58.702 37.037 17.11 6.09 43.98 3.16
6308 10487 8.406730 ACTTACACTAGAGCTAGTACAAAGTT 57.593 34.615 17.11 0.00 43.98 2.66
6309 10488 7.999450 ACTTACACTAGAGCTAGTACAAAGT 57.001 36.000 17.11 17.11 43.98 2.66
6310 10489 9.130312 CAAACTTACACTAGAGCTAGTACAAAG 57.870 37.037 9.66 13.86 43.98 2.77
6311 10490 8.636213 ACAAACTTACACTAGAGCTAGTACAAA 58.364 33.333 9.66 4.68 43.98 2.83
6312 10491 8.174733 ACAAACTTACACTAGAGCTAGTACAA 57.825 34.615 9.66 6.44 43.98 2.41
6313 10492 7.756395 ACAAACTTACACTAGAGCTAGTACA 57.244 36.000 9.66 0.00 43.98 2.90
6314 10493 8.945057 AGTACAAACTTACACTAGAGCTAGTAC 58.055 37.037 9.66 0.00 37.15 2.73
6316 10495 7.999450 AGTACAAACTTACACTAGAGCTAGT 57.001 36.000 4.38 4.38 38.75 2.57
6317 10496 9.991388 CTTAGTACAAACTTACACTAGAGCTAG 57.009 37.037 0.00 3.06 37.15 3.42
6318 10497 8.457261 GCTTAGTACAAACTTACACTAGAGCTA 58.543 37.037 0.00 0.00 37.15 3.32
6319 10498 7.177041 AGCTTAGTACAAACTTACACTAGAGCT 59.823 37.037 0.00 0.00 37.15 4.09
6320 10499 7.314393 AGCTTAGTACAAACTTACACTAGAGC 58.686 38.462 0.00 0.00 37.15 4.09
6321 10500 8.512956 TGAGCTTAGTACAAACTTACACTAGAG 58.487 37.037 0.00 0.00 37.15 2.43
6322 10501 8.400184 TGAGCTTAGTACAAACTTACACTAGA 57.600 34.615 0.00 0.00 37.15 2.43
6323 10502 9.130312 CTTGAGCTTAGTACAAACTTACACTAG 57.870 37.037 0.00 0.00 37.15 2.57
6324 10503 8.853126 TCTTGAGCTTAGTACAAACTTACACTA 58.147 33.333 0.00 0.00 37.15 2.74
6325 10504 7.652507 GTCTTGAGCTTAGTACAAACTTACACT 59.347 37.037 0.00 0.00 37.15 3.55
6326 10505 7.437267 TGTCTTGAGCTTAGTACAAACTTACAC 59.563 37.037 0.00 0.00 37.15 2.90
6327 10506 7.437267 GTGTCTTGAGCTTAGTACAAACTTACA 59.563 37.037 0.00 0.00 37.15 2.41
6328 10507 7.652507 AGTGTCTTGAGCTTAGTACAAACTTAC 59.347 37.037 0.00 0.00 37.15 2.34
6329 10508 7.723324 AGTGTCTTGAGCTTAGTACAAACTTA 58.277 34.615 0.00 0.00 37.15 2.24
6330 10509 6.583562 AGTGTCTTGAGCTTAGTACAAACTT 58.416 36.000 0.00 0.00 37.15 2.66
6331 10510 6.163135 AGTGTCTTGAGCTTAGTACAAACT 57.837 37.500 0.00 0.00 39.91 2.66
6332 10511 6.846325 AAGTGTCTTGAGCTTAGTACAAAC 57.154 37.500 0.00 0.00 0.00 2.93
6333 10512 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
6334 10513 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
6335 10514 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
6336 10515 9.204570 TCAAAATAAGTGTCTTGAGCTTAGTAC 57.795 33.333 0.00 0.00 0.00 2.73
6337 10516 9.424319 CTCAAAATAAGTGTCTTGAGCTTAGTA 57.576 33.333 0.00 0.00 38.63 1.82
6338 10517 8.150945 TCTCAAAATAAGTGTCTTGAGCTTAGT 58.849 33.333 5.91 0.00 42.87 2.24
6339 10518 8.439286 GTCTCAAAATAAGTGTCTTGAGCTTAG 58.561 37.037 5.91 0.00 42.87 2.18
6340 10519 7.931407 TGTCTCAAAATAAGTGTCTTGAGCTTA 59.069 33.333 5.91 0.00 42.87 3.09
6341 10520 6.767902 TGTCTCAAAATAAGTGTCTTGAGCTT 59.232 34.615 5.91 0.00 42.87 3.74
6342 10521 6.291377 TGTCTCAAAATAAGTGTCTTGAGCT 58.709 36.000 5.91 0.00 42.87 4.09
6343 10522 6.425114 TCTGTCTCAAAATAAGTGTCTTGAGC 59.575 38.462 5.91 3.14 42.87 4.26
6344 10523 7.117523 CCTCTGTCTCAAAATAAGTGTCTTGAG 59.882 40.741 4.63 4.63 43.97 3.02
6345 10524 6.931281 CCTCTGTCTCAAAATAAGTGTCTTGA 59.069 38.462 0.00 0.00 0.00 3.02
6346 10525 6.148480 CCCTCTGTCTCAAAATAAGTGTCTTG 59.852 42.308 0.00 0.00 0.00 3.02
6347 10526 6.043243 TCCCTCTGTCTCAAAATAAGTGTCTT 59.957 38.462 0.00 0.00 0.00 3.01
6348 10527 5.544176 TCCCTCTGTCTCAAAATAAGTGTCT 59.456 40.000 0.00 0.00 0.00 3.41
6349 10528 5.794894 TCCCTCTGTCTCAAAATAAGTGTC 58.205 41.667 0.00 0.00 0.00 3.67
6350 10529 5.308237 ACTCCCTCTGTCTCAAAATAAGTGT 59.692 40.000 0.00 0.00 0.00 3.55
6351 10530 5.799213 ACTCCCTCTGTCTCAAAATAAGTG 58.201 41.667 0.00 0.00 0.00 3.16
6352 10531 7.741554 ATACTCCCTCTGTCTCAAAATAAGT 57.258 36.000 0.00 0.00 0.00 2.24
6353 10532 9.757227 CTAATACTCCCTCTGTCTCAAAATAAG 57.243 37.037 0.00 0.00 0.00 1.73
6354 10533 9.268282 ACTAATACTCCCTCTGTCTCAAAATAA 57.732 33.333 0.00 0.00 0.00 1.40
6355 10534 8.840200 ACTAATACTCCCTCTGTCTCAAAATA 57.160 34.615 0.00 0.00 0.00 1.40
6356 10535 7.741554 ACTAATACTCCCTCTGTCTCAAAAT 57.258 36.000 0.00 0.00 0.00 1.82
6357 10536 7.554959 AACTAATACTCCCTCTGTCTCAAAA 57.445 36.000 0.00 0.00 0.00 2.44
6358 10537 7.554959 AAACTAATACTCCCTCTGTCTCAAA 57.445 36.000 0.00 0.00 0.00 2.69
6359 10538 7.894364 AGTAAACTAATACTCCCTCTGTCTCAA 59.106 37.037 0.00 0.00 30.26 3.02
6360 10539 7.339721 CAGTAAACTAATACTCCCTCTGTCTCA 59.660 40.741 0.00 0.00 33.90 3.27
6361 10540 7.201839 CCAGTAAACTAATACTCCCTCTGTCTC 60.202 44.444 0.00 0.00 33.90 3.36
6362 10541 6.608002 CCAGTAAACTAATACTCCCTCTGTCT 59.392 42.308 0.00 0.00 33.90 3.41
6363 10542 6.606395 TCCAGTAAACTAATACTCCCTCTGTC 59.394 42.308 0.00 0.00 33.90 3.51
6364 10543 6.500336 TCCAGTAAACTAATACTCCCTCTGT 58.500 40.000 0.00 0.00 33.90 3.41
6365 10544 6.834451 TCTCCAGTAAACTAATACTCCCTCTG 59.166 42.308 0.00 0.00 33.90 3.35
6366 10545 6.982899 TCTCCAGTAAACTAATACTCCCTCT 58.017 40.000 0.00 0.00 33.90 3.69
6367 10546 6.265876 CCTCTCCAGTAAACTAATACTCCCTC 59.734 46.154 0.00 0.00 33.90 4.30
6368 10547 6.137559 CCTCTCCAGTAAACTAATACTCCCT 58.862 44.000 0.00 0.00 33.90 4.20
6369 10548 5.304871 CCCTCTCCAGTAAACTAATACTCCC 59.695 48.000 0.00 0.00 33.90 4.30
6370 10549 6.134754 TCCCTCTCCAGTAAACTAATACTCC 58.865 44.000 0.00 0.00 33.90 3.85
6371 10550 6.834969 ACTCCCTCTCCAGTAAACTAATACTC 59.165 42.308 0.00 0.00 33.90 2.59
6372 10551 6.743788 ACTCCCTCTCCAGTAAACTAATACT 58.256 40.000 0.00 0.00 36.57 2.12
6373 10552 8.709272 ATACTCCCTCTCCAGTAAACTAATAC 57.291 38.462 0.00 0.00 0.00 1.89
6403 10582 8.011844 TGATCAGTCACAAGCTTAGTATACAT 57.988 34.615 5.50 0.00 0.00 2.29
6467 10646 9.301897 GCATTCAAGAGAAGGGGTAATAATTAT 57.698 33.333 0.00 0.00 37.14 1.28
6534 10719 4.689345 ACTTTTATGTCTCGTTTTCTCCCG 59.311 41.667 0.00 0.00 0.00 5.14
6559 10744 7.555195 TCTCATACTTCTTAGATAACGTGGTGA 59.445 37.037 0.00 0.00 0.00 4.02
6580 10765 4.084287 ACATCACCACAGCAAATTCTCAT 58.916 39.130 0.00 0.00 0.00 2.90
6725 10910 8.528044 TTAATCTGGTTTGTCTTAACAAGGTT 57.472 30.769 0.00 0.00 45.72 3.50
6753 10938 2.301870 TGTCGCACCTTTTGGAGAGTAT 59.698 45.455 0.00 0.00 44.07 2.12
7403 12495 7.173907 ACTGACAATTTTCATAGAACACTGAGG 59.826 37.037 0.00 0.00 0.00 3.86
7700 12883 1.339438 ACTTCAGCTGCGTCATCCATT 60.339 47.619 9.47 0.00 0.00 3.16
7838 13021 1.655046 CATGTGTGTGTGTGTGCGC 60.655 57.895 0.00 0.00 0.00 6.09
7981 13188 2.550606 ACACGCGTATGAAATGGTGTTT 59.449 40.909 13.44 0.00 35.27 2.83
7982 13189 2.147958 ACACGCGTATGAAATGGTGTT 58.852 42.857 13.44 0.00 35.27 3.32
8012 13219 2.168728 CTCTGGCTTACAGGGGAGTTAC 59.831 54.545 0.00 0.00 44.34 2.50
8312 13519 1.737838 CTCTGGTGTTGTGTGTGTGT 58.262 50.000 0.00 0.00 0.00 3.72
8316 13523 0.464373 CCAGCTCTGGTGTTGTGTGT 60.464 55.000 7.75 0.00 45.53 3.72
8318 13525 4.885426 CCAGCTCTGGTGTTGTGT 57.115 55.556 7.75 0.00 45.53 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.