Multiple sequence alignment - TraesCS2B01G070700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G070700 chr2B 100.000 4425 0 0 1 4425 37433049 37428625 0.000000e+00 8172.0
1 TraesCS2B01G070700 chr2B 84.444 180 20 6 328 501 617124274 617124451 2.120000e-38 171.0
2 TraesCS2B01G070700 chr2D 88.260 4097 267 92 413 4425 22961760 22965726 0.000000e+00 4704.0
3 TraesCS2B01G070700 chr2D 85.445 371 50 2 1885 2251 381956009 381955639 2.500000e-102 383.0
4 TraesCS2B01G070700 chr2D 83.456 272 24 11 413 663 22926938 22927209 2.660000e-57 233.0
5 TraesCS2B01G070700 chr2D 80.386 311 36 10 1578 1868 381966436 381966131 3.470000e-51 213.0
6 TraesCS2B01G070700 chr2A 86.200 3087 255 87 413 3439 24529687 24532662 0.000000e+00 3182.0
7 TraesCS2B01G070700 chr2A 87.526 481 50 8 1206 1678 269269295 269268817 8.370000e-152 547.0
8 TraesCS2B01G070700 chr2A 87.318 481 51 8 1206 1678 269307069 269306591 3.890000e-150 542.0
9 TraesCS2B01G070700 chr2A 78.548 909 102 48 1170 2023 579890291 579891161 3.050000e-141 512.0
10 TraesCS2B01G070700 chr2A 80.371 647 79 23 65 679 64042923 64043553 8.730000e-122 448.0
11 TraesCS2B01G070700 chr2A 94.828 58 3 0 4364 4421 706203446 706203503 1.690000e-14 91.6
12 TraesCS2B01G070700 chrUn 88.150 481 46 9 1206 1678 295944947 295944470 2.990000e-156 562.0
13 TraesCS2B01G070700 chrUn 87.164 483 49 10 1203 1675 265947961 265948440 1.810000e-148 536.0
14 TraesCS2B01G070700 chr4A 88.150 481 46 9 1203 1675 611288508 611288985 2.990000e-156 562.0
15 TraesCS2B01G070700 chr7A 87.318 481 51 8 1206 1678 199440562 199440084 3.890000e-150 542.0
16 TraesCS2B01G070700 chr7A 78.477 906 106 44 1170 2023 194560999 194561867 1.100000e-140 510.0
17 TraesCS2B01G070700 chr7A 78.084 908 107 46 1170 2023 198193521 198192652 1.430000e-134 490.0
18 TraesCS2B01G070700 chr7A 82.857 105 16 1 2301 2405 596721405 596721303 4.710000e-15 93.5
19 TraesCS2B01G070700 chr7A 93.333 45 3 0 4377 4421 510900737 510900781 2.860000e-07 67.6
20 TraesCS2B01G070700 chr3A 87.110 481 52 8 1206 1678 689755500 689755022 1.810000e-148 536.0
21 TraesCS2B01G070700 chr5A 78.564 905 106 46 1170 2023 163399050 163399917 2.360000e-142 516.0
22 TraesCS2B01G070700 chr4B 78.453 905 107 44 1170 2023 50449643 50448776 1.100000e-140 510.0
23 TraesCS2B01G070700 chr4B 91.163 215 18 1 1090 1303 597430845 597430631 1.560000e-74 291.0
24 TraesCS2B01G070700 chr5B 78.343 905 107 45 1170 2023 39518104 39517238 1.840000e-138 503.0
25 TraesCS2B01G070700 chr5B 80.451 266 48 3 1285 1549 41800437 41800175 2.700000e-47 200.0
26 TraesCS2B01G070700 chr6B 77.542 708 76 35 1355 2023 76042302 76042965 2.530000e-92 350.0
27 TraesCS2B01G070700 chr1B 83.495 103 11 5 4320 4421 645568000 645567903 1.690000e-14 91.6
28 TraesCS2B01G070700 chr1B 95.833 48 2 0 4377 4424 117269297 117269250 1.320000e-10 78.7
29 TraesCS2B01G070700 chr6D 83.505 97 11 4 4326 4421 29233483 29233391 7.890000e-13 86.1
30 TraesCS2B01G070700 chr3D 81.373 102 15 4 4320 4421 350858840 350858937 3.670000e-11 80.5
31 TraesCS2B01G070700 chr7D 79.000 100 17 3 4320 4419 597504200 597504295 1.030000e-06 65.8
32 TraesCS2B01G070700 chr5D 86.207 58 8 0 4364 4421 291484656 291484599 3.690000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G070700 chr2B 37428625 37433049 4424 True 8172 8172 100.000 1 4425 1 chr2B.!!$R1 4424
1 TraesCS2B01G070700 chr2D 22961760 22965726 3966 False 4704 4704 88.260 413 4425 1 chr2D.!!$F2 4012
2 TraesCS2B01G070700 chr2A 24529687 24532662 2975 False 3182 3182 86.200 413 3439 1 chr2A.!!$F1 3026
3 TraesCS2B01G070700 chr2A 579890291 579891161 870 False 512 512 78.548 1170 2023 1 chr2A.!!$F3 853
4 TraesCS2B01G070700 chr2A 64042923 64043553 630 False 448 448 80.371 65 679 1 chr2A.!!$F2 614
5 TraesCS2B01G070700 chr7A 194560999 194561867 868 False 510 510 78.477 1170 2023 1 chr7A.!!$F1 853
6 TraesCS2B01G070700 chr7A 198192652 198193521 869 True 490 490 78.084 1170 2023 1 chr7A.!!$R1 853
7 TraesCS2B01G070700 chr5A 163399050 163399917 867 False 516 516 78.564 1170 2023 1 chr5A.!!$F1 853
8 TraesCS2B01G070700 chr4B 50448776 50449643 867 True 510 510 78.453 1170 2023 1 chr4B.!!$R1 853
9 TraesCS2B01G070700 chr5B 39517238 39518104 866 True 503 503 78.343 1170 2023 1 chr5B.!!$R1 853
10 TraesCS2B01G070700 chr6B 76042302 76042965 663 False 350 350 77.542 1355 2023 1 chr6B.!!$F1 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 410 0.118346 TTAACAGAGGGGCAGAGGGA 59.882 55.0 0.00 0.0 0.00 4.20 F
1563 1651 0.034477 AAGGTGGATAAGGCAACGGG 60.034 55.0 0.00 0.0 46.39 5.28 F
2048 2175 0.318120 CAAAAGGGTTTGCTGCGGAT 59.682 50.0 0.00 0.0 37.89 4.18 F
2884 3042 0.739462 TCTTCGCGCAATACACCCAG 60.739 55.0 8.75 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 2029 0.108424 ACAGAATGCGCCTCAGACTC 60.108 55.0 4.18 0.0 42.53 3.36 R
2893 3051 0.250727 AATGCAACGCTGGGTGTACT 60.251 50.0 0.00 0.0 0.00 2.73 R
2894 3052 0.596082 AAATGCAACGCTGGGTGTAC 59.404 50.0 0.00 0.0 0.00 2.90 R
4358 4545 0.905357 ACAAGATCTCTCCCGTTGGG 59.095 55.0 0.00 0.0 46.11 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.678786 AGATGGTCACGGTAAGCCA 58.321 52.632 0.00 1.03 35.28 4.75
19 20 0.981183 AGATGGTCACGGTAAGCCAA 59.019 50.000 2.43 0.00 34.39 4.52
20 21 1.084289 GATGGTCACGGTAAGCCAAC 58.916 55.000 2.43 0.00 34.39 3.77
21 22 0.398696 ATGGTCACGGTAAGCCAACA 59.601 50.000 2.43 0.00 34.39 3.33
22 23 0.533308 TGGTCACGGTAAGCCAACAC 60.533 55.000 0.00 0.00 34.09 3.32
23 24 0.250166 GGTCACGGTAAGCCAACACT 60.250 55.000 0.00 0.00 34.09 3.55
24 25 0.865769 GTCACGGTAAGCCAACACTG 59.134 55.000 0.00 0.00 34.09 3.66
25 26 0.753867 TCACGGTAAGCCAACACTGA 59.246 50.000 0.00 0.00 34.09 3.41
26 27 1.346395 TCACGGTAAGCCAACACTGAT 59.654 47.619 0.00 0.00 34.09 2.90
27 28 1.732259 CACGGTAAGCCAACACTGATC 59.268 52.381 0.00 0.00 34.09 2.92
28 29 1.346395 ACGGTAAGCCAACACTGATCA 59.654 47.619 0.00 0.00 34.09 2.92
29 30 2.002586 CGGTAAGCCAACACTGATCAG 58.997 52.381 21.37 21.37 34.09 2.90
30 31 1.740025 GGTAAGCCAACACTGATCAGC 59.260 52.381 22.83 8.46 34.09 4.26
31 32 2.426522 GTAAGCCAACACTGATCAGCA 58.573 47.619 22.83 0.00 0.00 4.41
32 33 1.985473 AAGCCAACACTGATCAGCAA 58.015 45.000 22.83 0.00 0.00 3.91
33 34 1.531423 AGCCAACACTGATCAGCAAG 58.469 50.000 22.83 14.75 0.00 4.01
34 35 1.072806 AGCCAACACTGATCAGCAAGA 59.927 47.619 22.83 0.00 0.00 3.02
35 36 1.198637 GCCAACACTGATCAGCAAGAC 59.801 52.381 22.83 4.66 0.00 3.01
36 37 1.808945 CCAACACTGATCAGCAAGACC 59.191 52.381 22.83 0.00 0.00 3.85
37 38 2.551721 CCAACACTGATCAGCAAGACCT 60.552 50.000 22.83 0.00 0.00 3.85
38 39 2.469274 ACACTGATCAGCAAGACCTG 57.531 50.000 22.83 13.41 0.00 4.00
48 49 2.588027 GCAAGACCTGCCTAGACTAC 57.412 55.000 0.00 0.00 46.13 2.73
49 50 1.825474 GCAAGACCTGCCTAGACTACA 59.175 52.381 0.00 0.00 46.13 2.74
50 51 2.417515 GCAAGACCTGCCTAGACTACAC 60.418 54.545 0.00 0.00 46.13 2.90
51 52 2.826128 CAAGACCTGCCTAGACTACACA 59.174 50.000 0.00 0.00 0.00 3.72
52 53 2.448453 AGACCTGCCTAGACTACACAC 58.552 52.381 0.00 0.00 0.00 3.82
53 54 2.168496 GACCTGCCTAGACTACACACA 58.832 52.381 0.00 0.00 0.00 3.72
54 55 2.561419 GACCTGCCTAGACTACACACAA 59.439 50.000 0.00 0.00 0.00 3.33
55 56 2.299297 ACCTGCCTAGACTACACACAAC 59.701 50.000 0.00 0.00 0.00 3.32
56 57 2.563179 CCTGCCTAGACTACACACAACT 59.437 50.000 0.00 0.00 0.00 3.16
57 58 3.006967 CCTGCCTAGACTACACACAACTT 59.993 47.826 0.00 0.00 0.00 2.66
58 59 4.238514 CTGCCTAGACTACACACAACTTC 58.761 47.826 0.00 0.00 0.00 3.01
59 60 3.006537 TGCCTAGACTACACACAACTTCC 59.993 47.826 0.00 0.00 0.00 3.46
60 61 3.006537 GCCTAGACTACACACAACTTCCA 59.993 47.826 0.00 0.00 0.00 3.53
61 62 4.502604 GCCTAGACTACACACAACTTCCAA 60.503 45.833 0.00 0.00 0.00 3.53
62 63 4.989168 CCTAGACTACACACAACTTCCAAC 59.011 45.833 0.00 0.00 0.00 3.77
63 64 3.805207 AGACTACACACAACTTCCAACC 58.195 45.455 0.00 0.00 0.00 3.77
75 76 4.032960 ACTTCCAACCACAATGATGCTA 57.967 40.909 0.00 0.00 0.00 3.49
81 82 5.104374 CCAACCACAATGATGCTATTGTTC 58.896 41.667 10.46 0.00 46.18 3.18
98 99 9.159470 GCTATTGTTCGTTCTATTTTCTATTGC 57.841 33.333 0.00 0.00 0.00 3.56
104 105 9.554724 GTTCGTTCTATTTTCTATTGCAATCAA 57.445 29.630 16.86 7.43 36.51 2.57
119 120 4.149910 CAATCAAATTGCACCAAAAGCC 57.850 40.909 0.00 0.00 32.92 4.35
123 124 1.596603 AATTGCACCAAAAGCCAAGC 58.403 45.000 0.00 0.00 0.00 4.01
126 127 1.372307 GCACCAAAAGCCAAGCCAT 59.628 52.632 0.00 0.00 0.00 4.40
128 129 1.815021 GCACCAAAAGCCAAGCCATTT 60.815 47.619 0.00 0.00 0.00 2.32
147 148 2.202479 GGCGAACATTTCAGCGGC 60.202 61.111 0.00 0.00 41.85 6.53
148 149 2.202479 GCGAACATTTCAGCGGCC 60.202 61.111 0.00 0.00 0.00 6.13
174 175 5.468746 GCAGTGTGTACAAAATCAGAAGGTA 59.531 40.000 0.00 0.00 0.00 3.08
175 176 6.347725 GCAGTGTGTACAAAATCAGAAGGTAG 60.348 42.308 0.00 0.00 0.00 3.18
177 178 7.116948 CAGTGTGTACAAAATCAGAAGGTAGAG 59.883 40.741 0.00 0.00 0.00 2.43
185 186 0.976641 CAGAAGGTAGAGGCACCACA 59.023 55.000 0.00 0.00 41.40 4.17
202 203 6.595772 CACCACATGCTCTACTTATTTCTC 57.404 41.667 0.00 0.00 0.00 2.87
204 205 6.257411 CACCACATGCTCTACTTATTTCTCAG 59.743 42.308 0.00 0.00 0.00 3.35
214 221 4.973168 ACTTATTTCTCAGCTGTTGACCA 58.027 39.130 14.67 3.72 0.00 4.02
247 262 3.382546 GGCTGCCTAATCATTTGACACAT 59.617 43.478 12.43 0.00 0.00 3.21
251 266 4.210331 GCCTAATCATTTGACACATCCCT 58.790 43.478 0.00 0.00 0.00 4.20
253 268 4.512944 CCTAATCATTTGACACATCCCTCG 59.487 45.833 0.00 0.00 0.00 4.63
256 271 1.811965 CATTTGACACATCCCTCGCAA 59.188 47.619 0.00 0.00 0.00 4.85
265 280 2.032860 ATCCCTCGCAACCCTGATCG 62.033 60.000 0.00 0.00 0.00 3.69
272 293 1.442526 GCAACCCTGATCGCTCATGG 61.443 60.000 8.78 8.78 41.53 3.66
282 303 1.227380 CGCTCATGGGGTCAGTAGC 60.227 63.158 0.00 0.00 33.67 3.58
283 304 1.147153 GCTCATGGGGTCAGTAGCC 59.853 63.158 0.00 0.00 42.94 3.93
292 313 2.919228 GGGTCAGTAGCCCAATAGTTG 58.081 52.381 0.00 0.00 45.40 3.16
305 326 3.117888 CCAATAGTTGGCTACCACTGGAT 60.118 47.826 0.71 0.00 45.17 3.41
314 335 3.365472 GCTACCACTGGATTCCCAAAAT 58.635 45.455 0.71 0.00 42.98 1.82
323 344 3.269381 TGGATTCCCAAAATACAGAGCCT 59.731 43.478 0.00 0.00 40.09 4.58
324 345 3.633986 GGATTCCCAAAATACAGAGCCTG 59.366 47.826 0.00 1.16 37.52 4.85
325 346 7.290596 TGGATTCCCAAAATACAGAGCCTGT 62.291 44.000 11.76 11.76 42.87 4.00
329 356 2.095059 CCAAAATACAGAGCCTGTGTGC 60.095 50.000 15.55 0.00 45.01 4.57
355 382 3.888323 TGCAGCACAGAGGAAAATTACAA 59.112 39.130 0.00 0.00 0.00 2.41
359 386 6.094048 GCAGCACAGAGGAAAATTACAAGATA 59.906 38.462 0.00 0.00 0.00 1.98
360 387 7.678218 GCAGCACAGAGGAAAATTACAAGATAG 60.678 40.741 0.00 0.00 0.00 2.08
378 406 1.729586 AGTGTTAACAGAGGGGCAGA 58.270 50.000 8.98 0.00 0.00 4.26
380 408 0.984230 TGTTAACAGAGGGGCAGAGG 59.016 55.000 3.59 0.00 0.00 3.69
381 409 0.253327 GTTAACAGAGGGGCAGAGGG 59.747 60.000 0.00 0.00 0.00 4.30
382 410 0.118346 TTAACAGAGGGGCAGAGGGA 59.882 55.000 0.00 0.00 0.00 4.20
383 411 0.325671 TAACAGAGGGGCAGAGGGAG 60.326 60.000 0.00 0.00 0.00 4.30
384 412 2.767496 CAGAGGGGCAGAGGGAGG 60.767 72.222 0.00 0.00 0.00 4.30
401 429 1.141053 GAGGGGTGTACCATCCATGAC 59.859 57.143 3.11 0.00 44.24 3.06
408 436 2.344521 TACCATCCATGACGACGCGG 62.345 60.000 12.47 0.00 0.00 6.46
410 438 3.838271 ATCCATGACGACGCGGCT 61.838 61.111 11.76 0.00 35.04 5.52
505 539 1.303888 CACCAAGAGCAGCACCCAT 60.304 57.895 0.00 0.00 0.00 4.00
516 550 0.957395 AGCACCCATTCAGTTGAGCG 60.957 55.000 0.00 0.00 0.00 5.03
544 578 1.424493 GCCAGGAACGATTCAGCGAG 61.424 60.000 0.00 0.00 34.83 5.03
554 588 6.018669 GGAACGATTCAGCGAGAAATAAATCT 60.019 38.462 0.00 0.00 40.22 2.40
562 596 5.050490 AGCGAGAAATAAATCTATGCGTGT 58.950 37.500 0.00 0.00 36.52 4.49
783 830 2.124983 CTCCCTGCCGACATGGTG 60.125 66.667 0.00 0.00 41.21 4.17
838 885 1.230116 TGATGGGTGGATGGGTGGA 60.230 57.895 0.00 0.00 0.00 4.02
883 931 1.403780 GCGGTCGAGGCGGATATTATT 60.404 52.381 0.00 0.00 0.00 1.40
947 995 2.747855 GGCTGGCCCGAACAGAAG 60.748 66.667 0.00 0.00 38.20 2.85
948 996 2.747855 GCTGGCCCGAACAGAAGG 60.748 66.667 0.00 0.00 38.20 3.46
949 997 3.068881 CTGGCCCGAACAGAAGGA 58.931 61.111 0.00 0.00 38.20 3.36
950 998 1.078848 CTGGCCCGAACAGAAGGAG 60.079 63.158 0.00 0.00 38.20 3.69
989 1037 4.570874 GCGGCCCCAATCTCCCTC 62.571 72.222 0.00 0.00 0.00 4.30
990 1038 3.878667 CGGCCCCAATCTCCCTCC 61.879 72.222 0.00 0.00 0.00 4.30
991 1039 2.696125 GGCCCCAATCTCCCTCCA 60.696 66.667 0.00 0.00 0.00 3.86
992 1040 2.316586 GGCCCCAATCTCCCTCCAA 61.317 63.158 0.00 0.00 0.00 3.53
993 1041 1.228510 GCCCCAATCTCCCTCCAAG 59.771 63.158 0.00 0.00 0.00 3.61
1037 1085 3.041940 GTCCTCACAACGCCACCG 61.042 66.667 0.00 0.00 41.14 4.94
1038 1086 4.308458 TCCTCACAACGCCACCGG 62.308 66.667 0.00 0.00 39.22 5.28
1072 1120 4.148825 CGGAAGGGAGAGCCACGG 62.149 72.222 0.00 0.00 35.15 4.94
1205 1253 2.155279 GGCCAGAGGTGAGTTCTTTTC 58.845 52.381 0.00 0.00 0.00 2.29
1206 1254 2.487265 GGCCAGAGGTGAGTTCTTTTCA 60.487 50.000 0.00 0.00 0.00 2.69
1207 1255 2.810852 GCCAGAGGTGAGTTCTTTTCAG 59.189 50.000 0.00 0.00 0.00 3.02
1214 1262 5.854431 GGTGAGTTCTTTTCAGCTAAGAG 57.146 43.478 0.00 0.00 39.36 2.85
1215 1263 4.153296 GGTGAGTTCTTTTCAGCTAAGAGC 59.847 45.833 3.98 3.98 42.84 4.09
1216 1264 4.752101 GTGAGTTCTTTTCAGCTAAGAGCA 59.248 41.667 12.39 4.46 45.56 4.26
1217 1265 5.411053 GTGAGTTCTTTTCAGCTAAGAGCAT 59.589 40.000 12.39 0.82 45.56 3.79
1220 1268 5.584251 AGTTCTTTTCAGCTAAGAGCATAGC 59.416 40.000 12.39 7.81 45.56 2.97
1228 1284 2.808567 GCTAAGAGCATAGCTTGGGTCC 60.809 54.545 11.48 0.00 43.94 4.46
1232 1288 2.310052 AGAGCATAGCTTGGGTCCTTTT 59.690 45.455 11.48 0.00 39.88 2.27
1233 1289 2.685388 GAGCATAGCTTGGGTCCTTTTC 59.315 50.000 0.00 0.00 39.88 2.29
1237 1293 1.074248 GCTTGGGTCCTTTTCGGGA 59.926 57.895 0.00 0.00 0.00 5.14
1241 1297 2.112815 GGGTCCTTTTCGGGATGCG 61.113 63.158 0.00 0.00 37.73 4.73
1271 1327 2.037772 GGCTCCGATGTTATCACCATCT 59.962 50.000 0.00 0.00 37.22 2.90
1291 1347 3.889538 TCTCGGTTCCATTCGTCAGATAT 59.110 43.478 0.00 0.00 0.00 1.63
1300 1357 6.758254 TCCATTCGTCAGATATGCAGAATTA 58.242 36.000 7.17 0.00 0.00 1.40
1304 1361 6.934561 TCGTCAGATATGCAGAATTATTCG 57.065 37.500 0.00 0.00 34.02 3.34
1305 1362 5.346011 TCGTCAGATATGCAGAATTATTCGC 59.654 40.000 12.34 12.34 34.02 4.70
1310 1367 7.227314 TCAGATATGCAGAATTATTCGCTGTTT 59.773 33.333 17.32 6.77 32.88 2.83
1311 1368 7.322938 CAGATATGCAGAATTATTCGCTGTTTG 59.677 37.037 17.32 4.88 32.88 2.93
1316 1373 5.698832 CAGAATTATTCGCTGTTTGTTGGA 58.301 37.500 0.00 0.00 34.02 3.53
1325 1382 2.035066 GCTGTTTGTTGGATGCTTGAGT 59.965 45.455 0.00 0.00 0.00 3.41
1326 1383 3.253188 GCTGTTTGTTGGATGCTTGAGTA 59.747 43.478 0.00 0.00 0.00 2.59
1375 1452 4.011023 TCTCTACTGAACTAGGTGCTGAC 58.989 47.826 0.00 0.00 0.00 3.51
1387 1468 4.311816 AGGTGCTGACAATGTTTTCTTG 57.688 40.909 0.00 0.00 0.00 3.02
1411 1492 0.878523 TGTTTCAGTGCGAACTCGGG 60.879 55.000 0.00 0.00 40.23 5.14
1500 1582 0.107848 AGGTGGCCGTGTATTACTGC 60.108 55.000 0.00 0.00 38.62 4.40
1502 1584 1.677820 GGTGGCCGTGTATTACTGCTT 60.678 52.381 0.00 0.00 39.23 3.91
1542 1630 4.631131 TCAACCATACAATCCATCTAGCG 58.369 43.478 0.00 0.00 0.00 4.26
1560 1648 1.669265 GCGTAAGGTGGATAAGGCAAC 59.331 52.381 0.00 0.00 38.28 4.17
1562 1650 2.285977 GTAAGGTGGATAAGGCAACGG 58.714 52.381 0.00 0.00 46.39 4.44
1563 1651 0.034477 AAGGTGGATAAGGCAACGGG 60.034 55.000 0.00 0.00 46.39 5.28
1643 1737 4.873817 TGCAACATCTTCAGAAACCAATG 58.126 39.130 0.00 0.00 0.00 2.82
1753 1849 7.678837 TCCTTGAGAAATGTTTATGGCAAATT 58.321 30.769 0.00 0.00 0.00 1.82
1830 1946 1.928868 AGAACCAAAAGGGGCATGAG 58.071 50.000 0.00 0.00 42.91 2.90
1841 1957 0.462789 GGGCATGAGCAATTTCTGGG 59.537 55.000 0.00 0.00 44.61 4.45
1899 2021 2.803133 GCCAACTTTTCCAGGCTTGTTC 60.803 50.000 0.00 0.00 43.70 3.18
1904 2026 1.321474 TTTCCAGGCTTGTTCTGCTG 58.679 50.000 0.00 0.00 0.00 4.41
1907 2029 1.572085 CCAGGCTTGTTCTGCTGTCG 61.572 60.000 0.00 0.00 0.00 4.35
1915 2037 1.268079 TGTTCTGCTGTCGAGTCTGAG 59.732 52.381 0.00 0.00 0.00 3.35
1925 2047 1.144565 CGAGTCTGAGGCGCATTCTG 61.145 60.000 10.83 10.59 0.00 3.02
1934 2061 1.741706 AGGCGCATTCTGTTTCTCATG 59.258 47.619 10.83 0.00 0.00 3.07
2036 2163 1.336424 ACGTTTTATGCGCCAAAAGGG 60.336 47.619 26.66 19.05 35.89 3.95
2048 2175 0.318120 CAAAAGGGTTTGCTGCGGAT 59.682 50.000 0.00 0.00 37.89 4.18
2056 2183 1.004927 GTTTGCTGCGGATATGACGAC 60.005 52.381 0.00 0.00 0.00 4.34
2121 2248 4.491676 CGGCGGTGCTATAATATGTAAGT 58.508 43.478 0.00 0.00 0.00 2.24
2132 2259 7.689812 GCTATAATATGTAAGTGCTTTGCATCG 59.310 37.037 7.99 0.00 40.65 3.84
2196 2323 4.101114 TGCCTTGACCCTTGATTAGTCTA 58.899 43.478 0.00 0.00 0.00 2.59
2235 2362 5.296035 AGCTTAAACAGTGTGTTGTTAGGAC 59.704 40.000 0.00 0.00 40.14 3.85
2237 2364 6.480981 GCTTAAACAGTGTGTTGTTAGGACTA 59.519 38.462 0.00 0.00 40.14 2.59
2252 2379 4.689612 AGGACTAGTGCTTGTGAAGAAA 57.310 40.909 11.67 0.00 0.00 2.52
2255 2382 5.529060 AGGACTAGTGCTTGTGAAGAAAAAG 59.471 40.000 11.67 0.00 0.00 2.27
2256 2383 5.527582 GGACTAGTGCTTGTGAAGAAAAAGA 59.472 40.000 7.20 0.00 0.00 2.52
2259 2386 5.444663 AGTGCTTGTGAAGAAAAAGATCC 57.555 39.130 0.00 0.00 0.00 3.36
2260 2387 4.023707 AGTGCTTGTGAAGAAAAAGATCCG 60.024 41.667 0.00 0.00 0.00 4.18
2262 2389 4.024048 TGCTTGTGAAGAAAAAGATCCGTC 60.024 41.667 0.00 0.00 0.00 4.79
2263 2390 4.024048 GCTTGTGAAGAAAAAGATCCGTCA 60.024 41.667 0.00 0.00 0.00 4.35
2275 2402 9.704098 GAAAAAGATCCGTCAGATTGTAATTAC 57.296 33.333 8.75 8.75 34.42 1.89
2276 2403 9.449719 AAAAAGATCCGTCAGATTGTAATTACT 57.550 29.630 16.33 0.00 34.42 2.24
2278 2405 9.530633 AAAGATCCGTCAGATTGTAATTACTAC 57.469 33.333 16.33 7.86 34.42 2.73
2279 2406 8.466617 AGATCCGTCAGATTGTAATTACTACT 57.533 34.615 16.33 9.76 34.42 2.57
2337 2465 8.507249 AGAAATACATTCAGTAAGAGCAAACAC 58.493 33.333 0.00 0.00 40.72 3.32
2363 2491 2.308866 AGCTGGTAGCCACCTGTTTTAT 59.691 45.455 9.75 0.00 45.98 1.40
2368 2496 2.808906 AGCCACCTGTTTTATCTCCC 57.191 50.000 0.00 0.00 0.00 4.30
2372 2500 3.945921 GCCACCTGTTTTATCTCCCTAAC 59.054 47.826 0.00 0.00 0.00 2.34
2397 2527 7.668886 ACTTCAGAGAAATCAAAATCATCTGGT 59.331 33.333 0.00 0.00 34.77 4.00
2399 2529 6.314648 TCAGAGAAATCAAAATCATCTGGTCG 59.685 38.462 0.00 0.00 34.77 4.79
2402 2532 7.493971 AGAGAAATCAAAATCATCTGGTCGTAG 59.506 37.037 0.00 0.00 0.00 3.51
2519 2676 6.610741 AGAGTGGCGATTTCATCTTATTTC 57.389 37.500 0.00 0.00 0.00 2.17
2520 2677 6.352516 AGAGTGGCGATTTCATCTTATTTCT 58.647 36.000 0.00 0.00 0.00 2.52
2538 2695 6.670695 ATTTCTTGACTTAGTGGCCAATTT 57.329 33.333 12.70 0.04 0.00 1.82
2589 2746 4.993584 ACTTGTGTCATCAAGCTTGTAGAG 59.006 41.667 25.19 13.61 45.86 2.43
2598 2755 5.738619 TCAAGCTTGTAGAGTGTATTCCA 57.261 39.130 25.19 0.00 0.00 3.53
2814 2972 8.246871 TGAATCAAGTGTAGTTCTCTGTATCTG 58.753 37.037 0.00 0.00 0.00 2.90
2873 3031 1.960549 CGTTTGTAGTTTTCTTCGCGC 59.039 47.619 0.00 0.00 0.00 6.86
2878 3036 4.316375 TGTAGTTTTCTTCGCGCAATAC 57.684 40.909 8.75 0.00 0.00 1.89
2879 3037 3.741856 TGTAGTTTTCTTCGCGCAATACA 59.258 39.130 8.75 2.78 0.00 2.29
2881 3039 2.095919 AGTTTTCTTCGCGCAATACACC 60.096 45.455 8.75 0.00 0.00 4.16
2882 3040 0.800012 TTTCTTCGCGCAATACACCC 59.200 50.000 8.75 0.00 0.00 4.61
2884 3042 0.739462 TCTTCGCGCAATACACCCAG 60.739 55.000 8.75 0.00 0.00 4.45
2885 3043 2.309764 CTTCGCGCAATACACCCAGC 62.310 60.000 8.75 0.00 0.00 4.85
2888 3046 3.573558 CGCAATACACCCAGCGTT 58.426 55.556 0.00 0.00 44.67 4.84
2889 3047 1.134487 CGCAATACACCCAGCGTTG 59.866 57.895 0.00 0.00 44.67 4.10
2890 3048 1.295357 CGCAATACACCCAGCGTTGA 61.295 55.000 0.00 0.00 44.67 3.18
2891 3049 1.094785 GCAATACACCCAGCGTTGAT 58.905 50.000 0.00 0.00 0.00 2.57
2892 3050 1.202177 GCAATACACCCAGCGTTGATG 60.202 52.381 0.00 1.18 0.00 3.07
2893 3051 2.355197 CAATACACCCAGCGTTGATGA 58.645 47.619 0.00 0.00 0.00 2.92
2894 3052 2.315925 ATACACCCAGCGTTGATGAG 57.684 50.000 0.00 0.00 0.00 2.90
2895 3053 0.973632 TACACCCAGCGTTGATGAGT 59.026 50.000 0.00 0.00 0.00 3.41
2896 3054 0.973632 ACACCCAGCGTTGATGAGTA 59.026 50.000 0.00 0.00 0.00 2.59
2928 3086 1.881973 GCATTTCAGTCAAGTCAGCCA 59.118 47.619 0.00 0.00 0.00 4.75
2953 3111 8.505625 CATTTCCTATTTCAAACAACAAATGGG 58.494 33.333 0.00 0.00 40.36 4.00
2956 3114 5.179182 CCTATTTCAAACAACAAATGGGCAC 59.821 40.000 0.00 0.00 34.85 5.01
3043 3201 3.316283 GTCGATCATGCTTCTCTGATCC 58.684 50.000 6.89 0.00 43.08 3.36
3051 3209 2.224281 TGCTTCTCTGATCCGTGTTTGT 60.224 45.455 0.00 0.00 0.00 2.83
3068 3226 1.589196 GTCTGTCGATGTAGGCCGC 60.589 63.158 0.00 0.00 0.00 6.53
3254 3412 2.099756 GGGCCACATATTGAAAGCAGAC 59.900 50.000 4.39 0.00 0.00 3.51
3256 3414 2.223340 GCCACATATTGAAAGCAGACGG 60.223 50.000 0.00 0.00 0.00 4.79
3289 3447 7.044249 CGTCGGTGTAATACTGTAATTTGAGAG 60.044 40.741 0.00 0.00 36.98 3.20
3344 3502 4.948608 TTTGCGAGACACACAAGTAAAA 57.051 36.364 0.00 0.00 0.00 1.52
3467 3630 4.335647 CGTGGAGCTGGGCAGGTT 62.336 66.667 0.00 0.00 39.57 3.50
3471 3634 1.676967 GGAGCTGGGCAGGTTTCAG 60.677 63.158 0.00 0.00 39.57 3.02
3486 3649 5.939883 CAGGTTTCAGTGTCTCATAAATCCA 59.060 40.000 0.00 0.00 0.00 3.41
3497 3660 7.225538 GTGTCTCATAAATCCATACACTTCAGG 59.774 40.741 0.00 0.00 34.41 3.86
3498 3661 7.092891 TGTCTCATAAATCCATACACTTCAGGT 60.093 37.037 0.00 0.00 0.00 4.00
3500 3663 8.328758 TCTCATAAATCCATACACTTCAGGTTT 58.671 33.333 0.00 0.00 0.00 3.27
3501 3664 8.506168 TCATAAATCCATACACTTCAGGTTTC 57.494 34.615 0.00 0.00 0.00 2.78
3502 3665 8.106462 TCATAAATCCATACACTTCAGGTTTCA 58.894 33.333 0.00 0.00 0.00 2.69
3503 3666 8.739039 CATAAATCCATACACTTCAGGTTTCAA 58.261 33.333 0.00 0.00 0.00 2.69
3504 3667 7.781324 AAATCCATACACTTCAGGTTTCAAT 57.219 32.000 0.00 0.00 0.00 2.57
3505 3668 7.781324 AATCCATACACTTCAGGTTTCAATT 57.219 32.000 0.00 0.00 0.00 2.32
3506 3669 8.877864 AATCCATACACTTCAGGTTTCAATTA 57.122 30.769 0.00 0.00 0.00 1.40
3507 3670 9.479549 AATCCATACACTTCAGGTTTCAATTAT 57.520 29.630 0.00 0.00 0.00 1.28
3508 3671 8.506168 TCCATACACTTCAGGTTTCAATTATC 57.494 34.615 0.00 0.00 0.00 1.75
3536 3699 4.681978 GTGGCCGTGCGACTTCCT 62.682 66.667 0.00 0.00 34.54 3.36
3550 3737 5.086727 GCGACTTCCTTAATTTTTCCTTCG 58.913 41.667 0.00 0.00 0.00 3.79
3572 3759 1.459592 GTCGTGGAATGAAGTGAACCG 59.540 52.381 0.00 0.00 30.74 4.44
3586 3773 2.223377 GTGAACCGTGACCATGAAGTTC 59.777 50.000 0.00 0.00 35.35 3.01
3587 3774 2.158885 TGAACCGTGACCATGAAGTTCA 60.159 45.455 8.27 8.27 40.76 3.18
3588 3775 2.631160 ACCGTGACCATGAAGTTCAA 57.369 45.000 10.14 0.00 0.00 2.69
3759 3946 2.673775 TTGGCCATCTTGTTCCTTCA 57.326 45.000 6.09 0.00 0.00 3.02
3802 3989 3.808726 GCTTGACAAATGCATTGAACCAA 59.191 39.130 13.82 13.19 41.85 3.67
3836 4023 1.959899 GACACATGCCAACGCTCTCG 61.960 60.000 0.00 0.00 42.43 4.04
3856 4043 2.547855 CGTGATGAGAACTTCACCACCA 60.548 50.000 0.00 0.00 46.06 4.17
3872 4059 2.102252 CCACCATCAAGAGGAGACTAGC 59.898 54.545 0.00 0.00 44.43 3.42
3926 4113 5.762045 CAAACAAATAACTGACCAGGTGAG 58.238 41.667 4.17 4.17 0.00 3.51
3927 4114 4.974645 ACAAATAACTGACCAGGTGAGA 57.025 40.909 13.85 0.00 0.00 3.27
3978 4165 5.999205 TGATAAATTGGTTGTGCCTTCAT 57.001 34.783 0.00 0.00 38.35 2.57
3996 4183 5.126061 CCTTCATCCCCTTTATTGTTGACTG 59.874 44.000 0.00 0.00 0.00 3.51
4034 4221 3.893200 TCGAGGGAAGTCAACAGTCTTTA 59.107 43.478 0.00 0.00 0.00 1.85
4040 4227 5.057149 GGAAGTCAACAGTCTTTAAGCTCA 58.943 41.667 0.00 0.00 0.00 4.26
4104 4291 9.692325 AATCTAAACTTTTCAGAATATGCCTCT 57.308 29.630 0.00 0.00 0.00 3.69
4126 4313 1.398692 TCTTTTGCTTTTCCGCCACT 58.601 45.000 0.00 0.00 0.00 4.00
4127 4314 1.066908 TCTTTTGCTTTTCCGCCACTG 59.933 47.619 0.00 0.00 0.00 3.66
4168 4355 7.371936 GTGGAAATGAGCTATACGATTAGAGT 58.628 38.462 0.00 0.00 0.00 3.24
4190 4377 5.602978 AGTCTCCTTGAAGTCTACTTTTCCA 59.397 40.000 0.00 0.00 36.11 3.53
4217 4404 5.279406 CCAAAAGACCTTGCATCATTTGGTA 60.279 40.000 20.03 0.00 44.37 3.25
4223 4410 4.771577 ACCTTGCATCATTTGGTATTGTGA 59.228 37.500 0.00 0.00 0.00 3.58
4270 4457 3.626217 GGAAAGTGTCGAGGAAAAGTTGT 59.374 43.478 0.00 0.00 0.00 3.32
4272 4459 3.261981 AGTGTCGAGGAAAAGTTGTGT 57.738 42.857 0.00 0.00 0.00 3.72
4316 4503 8.713708 TCAATAACTTCCCATTTTCCAAGTTA 57.286 30.769 5.77 5.77 42.58 2.24
4318 4505 5.447624 AACTTCCCATTTTCCAAGTTACG 57.552 39.130 0.00 0.00 37.32 3.18
4327 4514 1.868469 TCCAAGTTACGTTTGGACCG 58.132 50.000 14.75 0.00 46.84 4.79
4357 4544 4.768404 GGACCTCCTCCTCTCGTT 57.232 61.111 0.00 0.00 35.89 3.85
4358 4545 2.495809 GGACCTCCTCCTCTCGTTC 58.504 63.158 0.00 0.00 35.89 3.95
4361 4548 1.000486 CCTCCTCCTCTCGTTCCCA 60.000 63.158 0.00 0.00 0.00 4.37
4386 4573 4.570930 GGGAGAGATCTTGTTCTCGTTTT 58.429 43.478 0.00 0.00 45.56 2.43
4421 4608 0.034186 CTTGCTTGGGGCTATGTGGA 60.034 55.000 0.00 0.00 42.39 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.981183 TTGGCTTACCGTGACCATCT 59.019 50.000 0.00 0.00 39.70 2.90
1 2 1.084289 GTTGGCTTACCGTGACCATC 58.916 55.000 0.00 0.00 39.70 3.51
2 3 0.398696 TGTTGGCTTACCGTGACCAT 59.601 50.000 0.00 0.00 39.70 3.55
3 4 0.533308 GTGTTGGCTTACCGTGACCA 60.533 55.000 0.00 0.00 39.70 4.02
4 5 0.250166 AGTGTTGGCTTACCGTGACC 60.250 55.000 0.00 0.00 39.70 4.02
5 6 0.865769 CAGTGTTGGCTTACCGTGAC 59.134 55.000 0.00 0.00 39.70 3.67
6 7 0.753867 TCAGTGTTGGCTTACCGTGA 59.246 50.000 0.00 0.00 39.70 4.35
7 8 1.732259 GATCAGTGTTGGCTTACCGTG 59.268 52.381 0.00 0.00 39.70 4.94
8 9 1.346395 TGATCAGTGTTGGCTTACCGT 59.654 47.619 0.00 0.00 39.70 4.83
9 10 2.002586 CTGATCAGTGTTGGCTTACCG 58.997 52.381 14.95 0.00 39.70 4.02
10 11 1.740025 GCTGATCAGTGTTGGCTTACC 59.260 52.381 23.38 0.00 0.00 2.85
11 12 2.426522 TGCTGATCAGTGTTGGCTTAC 58.573 47.619 23.38 3.85 0.00 2.34
12 13 2.857186 TGCTGATCAGTGTTGGCTTA 57.143 45.000 23.38 0.00 0.00 3.09
13 14 1.884579 CTTGCTGATCAGTGTTGGCTT 59.115 47.619 23.38 0.00 0.00 4.35
14 15 1.072806 TCTTGCTGATCAGTGTTGGCT 59.927 47.619 23.38 0.00 0.00 4.75
15 16 1.198637 GTCTTGCTGATCAGTGTTGGC 59.801 52.381 23.38 9.84 0.00 4.52
16 17 1.808945 GGTCTTGCTGATCAGTGTTGG 59.191 52.381 23.38 10.01 0.00 3.77
17 18 2.483106 CAGGTCTTGCTGATCAGTGTTG 59.517 50.000 23.38 11.63 0.00 3.33
18 19 2.775890 CAGGTCTTGCTGATCAGTGTT 58.224 47.619 23.38 1.04 0.00 3.32
19 20 2.469274 CAGGTCTTGCTGATCAGTGT 57.531 50.000 23.38 0.00 0.00 3.55
30 31 2.826128 TGTGTAGTCTAGGCAGGTCTTG 59.174 50.000 0.00 0.00 0.00 3.02
31 32 2.826725 GTGTGTAGTCTAGGCAGGTCTT 59.173 50.000 0.00 0.00 0.00 3.01
32 33 2.225041 TGTGTGTAGTCTAGGCAGGTCT 60.225 50.000 0.00 0.00 0.00 3.85
33 34 2.168496 TGTGTGTAGTCTAGGCAGGTC 58.832 52.381 0.00 0.00 0.00 3.85
34 35 2.299297 GTTGTGTGTAGTCTAGGCAGGT 59.701 50.000 0.00 0.00 0.00 4.00
35 36 2.563179 AGTTGTGTGTAGTCTAGGCAGG 59.437 50.000 0.00 0.00 0.00 4.85
36 37 3.944055 AGTTGTGTGTAGTCTAGGCAG 57.056 47.619 0.00 0.00 0.00 4.85
37 38 3.006537 GGAAGTTGTGTGTAGTCTAGGCA 59.993 47.826 0.00 0.00 0.00 4.75
38 39 3.006537 TGGAAGTTGTGTGTAGTCTAGGC 59.993 47.826 0.00 0.00 0.00 3.93
39 40 4.866508 TGGAAGTTGTGTGTAGTCTAGG 57.133 45.455 0.00 0.00 0.00 3.02
40 41 4.989168 GGTTGGAAGTTGTGTGTAGTCTAG 59.011 45.833 0.00 0.00 0.00 2.43
41 42 4.406326 TGGTTGGAAGTTGTGTGTAGTCTA 59.594 41.667 0.00 0.00 0.00 2.59
42 43 3.199071 TGGTTGGAAGTTGTGTGTAGTCT 59.801 43.478 0.00 0.00 0.00 3.24
43 44 3.311596 GTGGTTGGAAGTTGTGTGTAGTC 59.688 47.826 0.00 0.00 0.00 2.59
44 45 3.275999 GTGGTTGGAAGTTGTGTGTAGT 58.724 45.455 0.00 0.00 0.00 2.73
45 46 3.275143 TGTGGTTGGAAGTTGTGTGTAG 58.725 45.455 0.00 0.00 0.00 2.74
46 47 3.351794 TGTGGTTGGAAGTTGTGTGTA 57.648 42.857 0.00 0.00 0.00 2.90
47 48 2.208132 TGTGGTTGGAAGTTGTGTGT 57.792 45.000 0.00 0.00 0.00 3.72
48 49 3.130164 TCATTGTGGTTGGAAGTTGTGTG 59.870 43.478 0.00 0.00 0.00 3.82
49 50 3.360867 TCATTGTGGTTGGAAGTTGTGT 58.639 40.909 0.00 0.00 0.00 3.72
50 51 4.300803 CATCATTGTGGTTGGAAGTTGTG 58.699 43.478 0.00 0.00 0.00 3.33
51 52 3.243839 GCATCATTGTGGTTGGAAGTTGT 60.244 43.478 0.00 0.00 0.00 3.32
52 53 3.006110 AGCATCATTGTGGTTGGAAGTTG 59.994 43.478 0.00 0.00 0.00 3.16
53 54 3.233507 AGCATCATTGTGGTTGGAAGTT 58.766 40.909 0.00 0.00 0.00 2.66
54 55 2.880443 AGCATCATTGTGGTTGGAAGT 58.120 42.857 0.00 0.00 0.00 3.01
55 56 5.105635 ACAATAGCATCATTGTGGTTGGAAG 60.106 40.000 9.68 0.00 45.22 3.46
56 57 4.771577 ACAATAGCATCATTGTGGTTGGAA 59.228 37.500 9.68 0.00 45.22 3.53
57 58 4.343231 ACAATAGCATCATTGTGGTTGGA 58.657 39.130 9.68 0.00 45.22 3.53
58 59 4.724074 ACAATAGCATCATTGTGGTTGG 57.276 40.909 9.68 0.00 45.22 3.77
59 60 4.794762 CGAACAATAGCATCATTGTGGTTG 59.205 41.667 10.84 0.00 46.00 3.77
60 61 4.458989 ACGAACAATAGCATCATTGTGGTT 59.541 37.500 10.84 0.00 46.00 3.67
61 62 4.009675 ACGAACAATAGCATCATTGTGGT 58.990 39.130 10.84 9.59 46.00 4.16
62 63 4.621068 ACGAACAATAGCATCATTGTGG 57.379 40.909 10.84 9.12 46.00 4.17
63 64 5.872635 AGAACGAACAATAGCATCATTGTG 58.127 37.500 10.84 4.28 46.00 3.33
98 99 3.564644 TGGCTTTTGGTGCAATTTGATTG 59.435 39.130 0.00 0.00 43.06 2.67
104 105 1.596603 GCTTGGCTTTTGGTGCAATT 58.403 45.000 0.00 0.00 0.00 2.32
123 124 2.609350 CTGAAATGTTCGCCCAAATGG 58.391 47.619 0.00 0.00 37.09 3.16
126 127 0.039617 CGCTGAAATGTTCGCCCAAA 60.040 50.000 0.00 0.00 0.00 3.28
128 129 2.331893 CCGCTGAAATGTTCGCCCA 61.332 57.895 0.00 0.00 0.00 5.36
130 131 2.202479 GCCGCTGAAATGTTCGCC 60.202 61.111 0.00 0.00 0.00 5.54
132 133 1.135315 CAGGCCGCTGAAATGTTCG 59.865 57.895 0.00 0.00 0.00 3.95
138 139 2.979676 CACTGCAGGCCGCTGAAA 60.980 61.111 24.92 5.60 41.88 2.69
147 148 3.814842 TCTGATTTTGTACACACTGCAGG 59.185 43.478 19.93 9.66 0.00 4.85
148 149 5.422666 TTCTGATTTTGTACACACTGCAG 57.577 39.130 13.48 13.48 0.00 4.41
185 186 6.232581 ACAGCTGAGAAATAAGTAGAGCAT 57.767 37.500 23.35 0.00 0.00 3.79
188 189 6.533367 GGTCAACAGCTGAGAAATAAGTAGAG 59.467 42.308 23.35 0.00 33.60 2.43
189 190 6.014584 TGGTCAACAGCTGAGAAATAAGTAGA 60.015 38.462 23.35 0.00 33.60 2.59
202 203 4.572985 TCAGATTTTTGGTCAACAGCTG 57.427 40.909 13.48 13.48 0.00 4.24
204 205 4.301628 CCTTCAGATTTTTGGTCAACAGC 58.698 43.478 0.00 0.00 0.00 4.40
214 221 5.018809 TGATTAGGCAGCCTTCAGATTTTT 58.981 37.500 22.26 0.00 34.61 1.94
247 262 2.721167 CGATCAGGGTTGCGAGGGA 61.721 63.158 0.00 0.00 0.00 4.20
251 266 1.960040 ATGAGCGATCAGGGTTGCGA 61.960 55.000 10.08 0.00 33.60 5.10
253 268 1.442526 CCATGAGCGATCAGGGTTGC 61.443 60.000 25.26 0.00 36.86 4.17
256 271 2.446848 CCCCATGAGCGATCAGGGT 61.447 63.158 29.94 0.94 39.69 4.34
265 280 1.147153 GGCTACTGACCCCATGAGC 59.853 63.158 0.00 0.00 32.27 4.26
286 307 3.136626 GGAATCCAGTGGTAGCCAACTAT 59.863 47.826 9.54 0.00 34.18 2.12
290 311 0.623723 GGGAATCCAGTGGTAGCCAA 59.376 55.000 9.54 0.00 34.18 4.52
292 313 0.623723 TTGGGAATCCAGTGGTAGCC 59.376 55.000 9.54 8.59 45.04 3.93
293 314 2.507407 TTTGGGAATCCAGTGGTAGC 57.493 50.000 9.54 0.00 45.04 3.58
295 316 5.251932 TCTGTATTTTGGGAATCCAGTGGTA 59.748 40.000 9.54 0.00 45.04 3.25
305 326 3.181434 ACACAGGCTCTGTATTTTGGGAA 60.181 43.478 7.41 0.00 43.43 3.97
329 356 0.535780 TTTCCTCTGTGCTGCACCTG 60.536 55.000 28.17 20.49 32.73 4.00
334 361 4.216257 TCTTGTAATTTTCCTCTGTGCTGC 59.784 41.667 0.00 0.00 0.00 5.25
336 363 7.335422 CACTATCTTGTAATTTTCCTCTGTGCT 59.665 37.037 0.00 0.00 0.00 4.40
355 382 3.450904 TGCCCCTCTGTTAACACTATCT 58.549 45.455 3.59 0.00 0.00 1.98
359 386 1.625818 CTCTGCCCCTCTGTTAACACT 59.374 52.381 3.59 0.00 0.00 3.55
360 387 1.339151 CCTCTGCCCCTCTGTTAACAC 60.339 57.143 3.59 0.00 0.00 3.32
408 436 2.044551 CTTCCCCTGAAGCCCAGC 60.045 66.667 0.00 0.00 41.45 4.85
410 438 2.941025 CCCTTCCCCTGAAGCCCA 60.941 66.667 0.00 0.00 45.53 5.36
505 539 4.617520 TGGCGGCGCTCAACTGAA 62.618 61.111 32.30 4.50 0.00 3.02
525 559 1.424493 CTCGCTGAATCGTTCCTGGC 61.424 60.000 0.00 0.00 0.00 4.85
544 578 5.758296 TCCTCCACACGCATAGATTTATTTC 59.242 40.000 0.00 0.00 0.00 2.17
554 588 2.717044 CCCGTCCTCCACACGCATA 61.717 63.158 0.00 0.00 35.87 3.14
813 860 3.094062 ATCCACCCATCACTCGCGG 62.094 63.158 6.13 0.00 0.00 6.46
814 861 1.884464 CATCCACCCATCACTCGCG 60.884 63.158 0.00 0.00 0.00 5.87
815 862 1.524621 CCATCCACCCATCACTCGC 60.525 63.158 0.00 0.00 0.00 5.03
816 863 1.146930 CCCATCCACCCATCACTCG 59.853 63.158 0.00 0.00 0.00 4.18
817 864 0.107017 CACCCATCCACCCATCACTC 60.107 60.000 0.00 0.00 0.00 3.51
818 865 1.574526 CCACCCATCCACCCATCACT 61.575 60.000 0.00 0.00 0.00 3.41
819 866 1.076777 CCACCCATCCACCCATCAC 60.077 63.158 0.00 0.00 0.00 3.06
820 867 0.627170 ATCCACCCATCCACCCATCA 60.627 55.000 0.00 0.00 0.00 3.07
821 868 0.178981 CATCCACCCATCCACCCATC 60.179 60.000 0.00 0.00 0.00 3.51
822 869 1.658053 CCATCCACCCATCCACCCAT 61.658 60.000 0.00 0.00 0.00 4.00
823 870 2.315794 CCATCCACCCATCCACCCA 61.316 63.158 0.00 0.00 0.00 4.51
824 871 2.006415 TCCATCCACCCATCCACCC 61.006 63.158 0.00 0.00 0.00 4.61
825 872 1.227383 GTCCATCCACCCATCCACC 59.773 63.158 0.00 0.00 0.00 4.61
826 873 1.153168 CGTCCATCCACCCATCCAC 60.153 63.158 0.00 0.00 0.00 4.02
838 885 2.493273 AAAACCATCCCGGCGTCCAT 62.493 55.000 6.01 0.00 39.03 3.41
883 931 3.104512 CTCGGCCCAACCCTATGATATA 58.895 50.000 0.00 0.00 33.26 0.86
931 979 2.747855 CCTTCTGTTCGGGCCAGC 60.748 66.667 4.39 0.00 0.00 4.85
933 981 3.068881 CTCCTTCTGTTCGGGCCA 58.931 61.111 4.39 0.00 0.00 5.36
987 1035 2.125350 GGCTCAGCCGTCTTGGAG 60.125 66.667 0.00 0.00 39.62 3.86
1037 1085 3.787001 CTCGCTTCTCCCCACCCC 61.787 72.222 0.00 0.00 0.00 4.95
1038 1086 4.475135 GCTCGCTTCTCCCCACCC 62.475 72.222 0.00 0.00 0.00 4.61
1039 1087 4.821589 CGCTCGCTTCTCCCCACC 62.822 72.222 0.00 0.00 0.00 4.61
1040 1088 4.821589 CCGCTCGCTTCTCCCCAC 62.822 72.222 0.00 0.00 0.00 4.61
1042 1090 3.724914 CTTCCGCTCGCTTCTCCCC 62.725 68.421 0.00 0.00 0.00 4.81
1043 1091 2.202810 CTTCCGCTCGCTTCTCCC 60.203 66.667 0.00 0.00 0.00 4.30
1044 1092 2.202810 CCTTCCGCTCGCTTCTCC 60.203 66.667 0.00 0.00 0.00 3.71
1045 1093 2.202810 CCCTTCCGCTCGCTTCTC 60.203 66.667 0.00 0.00 0.00 2.87
1092 1140 2.683933 GGCGAGGGGAGGAAGTGA 60.684 66.667 0.00 0.00 0.00 3.41
1207 1255 2.488952 GACCCAAGCTATGCTCTTAGC 58.511 52.381 6.66 6.66 44.03 3.09
1209 1257 2.764269 AGGACCCAAGCTATGCTCTTA 58.236 47.619 0.00 0.00 38.25 2.10
1210 1258 1.589414 AGGACCCAAGCTATGCTCTT 58.411 50.000 0.00 0.00 38.25 2.85
1211 1259 1.589414 AAGGACCCAAGCTATGCTCT 58.411 50.000 0.00 0.00 38.25 4.09
1212 1260 2.426842 AAAGGACCCAAGCTATGCTC 57.573 50.000 0.00 0.00 38.25 4.26
1214 1262 1.401905 CGAAAAGGACCCAAGCTATGC 59.598 52.381 0.00 0.00 0.00 3.14
1215 1263 2.017049 CCGAAAAGGACCCAAGCTATG 58.983 52.381 0.00 0.00 45.00 2.23
1216 1264 1.064685 CCCGAAAAGGACCCAAGCTAT 60.065 52.381 0.00 0.00 45.00 2.97
1217 1265 0.326927 CCCGAAAAGGACCCAAGCTA 59.673 55.000 0.00 0.00 45.00 3.32
1220 1268 1.463674 CATCCCGAAAAGGACCCAAG 58.536 55.000 0.00 0.00 45.00 3.61
1221 1269 0.610785 GCATCCCGAAAAGGACCCAA 60.611 55.000 0.00 0.00 45.00 4.12
1222 1270 1.001393 GCATCCCGAAAAGGACCCA 60.001 57.895 0.00 0.00 45.00 4.51
1232 1288 1.146041 CTCCCAATTCGCATCCCGA 59.854 57.895 0.00 0.00 45.77 5.14
1233 1289 1.893808 CCTCCCAATTCGCATCCCG 60.894 63.158 0.00 0.00 38.61 5.14
1237 1293 1.152881 GGAGCCTCCCAATTCGCAT 60.153 57.895 0.00 0.00 0.00 4.73
1241 1297 0.181350 ACATCGGAGCCTCCCAATTC 59.819 55.000 4.85 0.00 31.13 2.17
1271 1327 3.798889 GCATATCTGACGAATGGAACCGA 60.799 47.826 0.00 0.00 0.00 4.69
1283 1339 6.146837 ACAGCGAATAATTCTGCATATCTGAC 59.853 38.462 0.00 0.00 33.67 3.51
1291 1347 4.764679 ACAAACAGCGAATAATTCTGCA 57.235 36.364 0.00 0.00 33.67 4.41
1300 1357 1.888512 AGCATCCAACAAACAGCGAAT 59.111 42.857 0.00 0.00 0.00 3.34
1304 1361 2.035066 ACTCAAGCATCCAACAAACAGC 59.965 45.455 0.00 0.00 0.00 4.40
1305 1362 3.996150 ACTCAAGCATCCAACAAACAG 57.004 42.857 0.00 0.00 0.00 3.16
1310 1367 1.281867 CCCCTACTCAAGCATCCAACA 59.718 52.381 0.00 0.00 0.00 3.33
1311 1368 1.559682 TCCCCTACTCAAGCATCCAAC 59.440 52.381 0.00 0.00 0.00 3.77
1316 1373 6.460103 AAATCATATCCCCTACTCAAGCAT 57.540 37.500 0.00 0.00 0.00 3.79
1325 1382 7.016661 GTCTCTCCAAGAAAATCATATCCCCTA 59.983 40.741 0.00 0.00 35.21 3.53
1326 1383 5.913534 TCTCTCCAAGAAAATCATATCCCCT 59.086 40.000 0.00 0.00 0.00 4.79
1364 1441 5.009010 ACAAGAAAACATTGTCAGCACCTAG 59.991 40.000 0.00 0.00 36.10 3.02
1375 1452 6.365789 ACTGAAACACACACAAGAAAACATTG 59.634 34.615 0.00 0.00 0.00 2.82
1387 1468 1.396996 AGTTCGCACTGAAACACACAC 59.603 47.619 0.00 0.00 38.60 3.82
1411 1492 1.807142 GGGTTTAGAGCAGCAACTGAC 59.193 52.381 0.00 0.00 32.44 3.51
1500 1582 6.528072 GGTTGAAACAGAGACAACTCAAAAAG 59.472 38.462 0.00 0.00 44.79 2.27
1502 1584 5.475220 TGGTTGAAACAGAGACAACTCAAAA 59.525 36.000 0.00 0.00 44.79 2.44
1542 1630 2.285977 CCGTTGCCTTATCCACCTTAC 58.714 52.381 0.00 0.00 0.00 2.34
1560 1648 2.083835 AACGACAGTGTCTCCACCCG 62.084 60.000 20.64 9.02 42.88 5.28
1562 1650 0.387929 TGAACGACAGTGTCTCCACC 59.612 55.000 20.64 6.42 42.88 4.61
1563 1651 2.440539 ATGAACGACAGTGTCTCCAC 57.559 50.000 20.64 9.92 42.17 4.02
1577 1665 5.233689 GTCTACTACCACGCCAAATATGAAC 59.766 44.000 0.00 0.00 0.00 3.18
1643 1737 3.636153 AGAACCTGAATGGGCTAGAAC 57.364 47.619 0.00 0.00 41.11 3.01
1753 1849 5.103558 ACCATTTGGGGATCATACATCTGAA 60.104 40.000 0.96 0.00 42.91 3.02
1849 1966 5.368989 AGGAGTAACAAACAGAGGAACAAG 58.631 41.667 0.00 0.00 0.00 3.16
1850 1967 5.130477 AGAGGAGTAACAAACAGAGGAACAA 59.870 40.000 0.00 0.00 0.00 2.83
1858 1975 4.246458 GGCTGTAGAGGAGTAACAAACAG 58.754 47.826 0.00 0.00 36.74 3.16
1860 1977 4.267349 TGGCTGTAGAGGAGTAACAAAC 57.733 45.455 0.00 0.00 0.00 2.93
1895 2017 1.268079 CTCAGACTCGACAGCAGAACA 59.732 52.381 0.00 0.00 0.00 3.18
1899 2021 1.153862 GCCTCAGACTCGACAGCAG 60.154 63.158 0.00 0.00 0.00 4.24
1904 2026 1.142778 GAATGCGCCTCAGACTCGAC 61.143 60.000 4.18 0.00 0.00 4.20
1907 2029 0.108424 ACAGAATGCGCCTCAGACTC 60.108 55.000 4.18 0.00 42.53 3.36
1915 2037 1.470098 ACATGAGAAACAGAATGCGCC 59.530 47.619 4.18 0.00 42.53 6.53
1925 2047 7.971183 ACTTTCTTCTTCCTACATGAGAAAC 57.029 36.000 0.00 0.00 0.00 2.78
1934 2061 7.783042 TGGAGCTAATACTTTCTTCTTCCTAC 58.217 38.462 0.00 0.00 0.00 3.18
2036 2163 1.004927 GTCGTCATATCCGCAGCAAAC 60.005 52.381 0.00 0.00 0.00 2.93
2066 2193 6.384258 TTTCTGCATACAGCTTTTTGTACA 57.616 33.333 0.00 0.00 44.10 2.90
2067 2194 7.382218 ACAATTTCTGCATACAGCTTTTTGTAC 59.618 33.333 0.00 0.00 44.10 2.90
2121 2248 3.063704 CCAGGGCGATGCAAAGCA 61.064 61.111 16.78 0.00 44.86 3.91
2132 2259 1.501582 ACATAGAAGGAGACCAGGGC 58.498 55.000 0.00 0.00 0.00 5.19
2196 2323 6.296026 TGTTTAAGCTGGAAGTGTACTCATT 58.704 36.000 0.00 0.00 35.30 2.57
2235 2362 6.606768 GGATCTTTTTCTTCACAAGCACTAG 58.393 40.000 0.00 0.00 0.00 2.57
2237 2364 4.023707 CGGATCTTTTTCTTCACAAGCACT 60.024 41.667 0.00 0.00 0.00 4.40
2252 2379 9.530633 GTAGTAATTACAATCTGACGGATCTTT 57.469 33.333 17.65 0.00 32.76 2.52
2255 2382 8.136165 ACAGTAGTAATTACAATCTGACGGATC 58.864 37.037 26.17 0.00 34.56 3.36
2256 2383 8.008513 ACAGTAGTAATTACAATCTGACGGAT 57.991 34.615 26.17 11.75 34.56 4.18
2328 2455 1.206072 CAGCTCAGCGTGTTTGCTC 59.794 57.895 0.00 0.00 45.23 4.26
2337 2465 2.510238 GTGGCTACCAGCTCAGCG 60.510 66.667 0.00 0.00 41.99 5.18
2363 2491 6.935240 TTGATTTCTCTGAAGTTAGGGAGA 57.065 37.500 0.00 0.00 33.69 3.71
2372 2500 8.053026 ACCAGATGATTTTGATTTCTCTGAAG 57.947 34.615 0.00 0.00 32.36 3.02
2397 2527 5.117355 ACAAGAAATTGTCGAGACTACGA 57.883 39.130 4.78 0.00 40.00 3.43
2399 2529 7.870588 ACTAACAAGAAATTGTCGAGACTAC 57.129 36.000 4.78 0.00 33.35 2.73
2402 2532 7.896894 GGATACTAACAAGAAATTGTCGAGAC 58.103 38.462 8.95 0.00 33.35 3.36
2465 2609 3.935828 GACAGGTGAAGAGTAAATGAGGC 59.064 47.826 0.00 0.00 0.00 4.70
2473 2617 3.296854 ACACAGTGACAGGTGAAGAGTA 58.703 45.455 7.81 0.00 38.38 2.59
2519 2676 4.178545 CCAAATTGGCCACTAAGTCAAG 57.821 45.455 3.88 0.00 0.00 3.02
2538 2695 6.804295 CGCTAAAGTAAAACATTTGTATGCCA 59.196 34.615 0.00 0.00 35.03 4.92
2543 2700 8.606040 AGTACCGCTAAAGTAAAACATTTGTA 57.394 30.769 0.00 0.00 0.00 2.41
2589 2746 9.599322 GTTGAAATATCATTCGATGGAATACAC 57.401 33.333 2.33 0.00 40.90 2.90
2598 2755 8.236585 TCCAAATGGTTGAAATATCATTCGAT 57.763 30.769 0.00 0.00 36.83 3.59
2837 2995 3.924686 ACAAACGATCGATGTACCAGAAC 59.075 43.478 24.34 0.00 0.00 3.01
2873 3031 2.352651 CTCATCAACGCTGGGTGTATTG 59.647 50.000 0.00 0.00 0.00 1.90
2878 3036 1.337728 TGTACTCATCAACGCTGGGTG 60.338 52.381 0.00 0.00 0.00 4.61
2879 3037 0.973632 TGTACTCATCAACGCTGGGT 59.026 50.000 0.00 0.00 0.00 4.51
2881 3039 1.359848 GGTGTACTCATCAACGCTGG 58.640 55.000 0.00 0.00 0.00 4.85
2882 3040 1.337728 TGGGTGTACTCATCAACGCTG 60.338 52.381 0.00 0.00 0.00 5.18
2884 3042 1.359848 CTGGGTGTACTCATCAACGC 58.640 55.000 0.00 0.00 0.00 4.84
2885 3043 1.359848 GCTGGGTGTACTCATCAACG 58.640 55.000 0.00 0.00 0.00 4.10
2886 3044 1.337823 ACGCTGGGTGTACTCATCAAC 60.338 52.381 0.00 0.00 0.00 3.18
2887 3045 0.973632 ACGCTGGGTGTACTCATCAA 59.026 50.000 0.00 0.00 0.00 2.57
2888 3046 0.973632 AACGCTGGGTGTACTCATCA 59.026 50.000 0.00 0.00 0.00 3.07
2889 3047 1.359848 CAACGCTGGGTGTACTCATC 58.640 55.000 0.00 0.00 0.00 2.92
2890 3048 0.673644 GCAACGCTGGGTGTACTCAT 60.674 55.000 0.00 0.00 0.00 2.90
2891 3049 1.301401 GCAACGCTGGGTGTACTCA 60.301 57.895 0.00 0.00 0.00 3.41
2892 3050 0.673644 ATGCAACGCTGGGTGTACTC 60.674 55.000 0.00 0.00 0.00 2.59
2893 3051 0.250727 AATGCAACGCTGGGTGTACT 60.251 50.000 0.00 0.00 0.00 2.73
2894 3052 0.596082 AAATGCAACGCTGGGTGTAC 59.404 50.000 0.00 0.00 0.00 2.90
2895 3053 0.878416 GAAATGCAACGCTGGGTGTA 59.122 50.000 0.00 0.00 0.00 2.90
2896 3054 1.106351 TGAAATGCAACGCTGGGTGT 61.106 50.000 0.00 0.00 0.00 4.16
2928 3086 7.174772 GCCCATTTGTTGTTTGAAATAGGAAAT 59.825 33.333 0.00 0.00 0.00 2.17
2953 3111 7.412137 AATGTATTCAGAAAAGCTTTTGTGC 57.588 32.000 33.15 23.15 40.17 4.57
2984 3142 8.609176 GGCTTATAATCGACATGTAAACAGAAA 58.391 33.333 0.00 0.00 0.00 2.52
2985 3143 7.042992 CGGCTTATAATCGACATGTAAACAGAA 60.043 37.037 0.00 0.00 0.00 3.02
3043 3201 2.661675 CCTACATCGACAGACAAACACG 59.338 50.000 0.00 0.00 0.00 4.49
3051 3209 2.805546 GCGGCCTACATCGACAGA 59.194 61.111 0.00 0.00 0.00 3.41
3254 3412 1.547292 TTACACCGACGCGAAAACCG 61.547 55.000 15.93 7.86 42.21 4.44
3256 3414 2.663119 AGTATTACACCGACGCGAAAAC 59.337 45.455 15.93 0.00 0.00 2.43
3289 3447 4.162096 ACATCCGTAGATCTAATGCGAC 57.838 45.455 3.40 0.00 0.00 5.19
3344 3502 7.132213 CGACACTTGAACAAAATCATACAAGT 58.868 34.615 0.00 0.00 45.25 3.16
3467 3630 7.851228 AGTGTATGGATTTATGAGACACTGAA 58.149 34.615 4.10 0.00 43.18 3.02
3471 3634 7.225538 CCTGAAGTGTATGGATTTATGAGACAC 59.774 40.741 0.00 0.00 36.75 3.67
3497 3660 6.801862 CCACGACCTGAAAAGATAATTGAAAC 59.198 38.462 0.00 0.00 0.00 2.78
3498 3661 6.569610 GCCACGACCTGAAAAGATAATTGAAA 60.570 38.462 0.00 0.00 0.00 2.69
3500 3663 4.394920 GCCACGACCTGAAAAGATAATTGA 59.605 41.667 0.00 0.00 0.00 2.57
3501 3664 4.438744 GGCCACGACCTGAAAAGATAATTG 60.439 45.833 0.00 0.00 0.00 2.32
3502 3665 3.694566 GGCCACGACCTGAAAAGATAATT 59.305 43.478 0.00 0.00 0.00 1.40
3503 3666 3.279434 GGCCACGACCTGAAAAGATAAT 58.721 45.455 0.00 0.00 0.00 1.28
3504 3667 2.706890 GGCCACGACCTGAAAAGATAA 58.293 47.619 0.00 0.00 0.00 1.75
3505 3668 1.404986 CGGCCACGACCTGAAAAGATA 60.405 52.381 2.24 0.00 44.60 1.98
3506 3669 0.673644 CGGCCACGACCTGAAAAGAT 60.674 55.000 2.24 0.00 44.60 2.40
3507 3670 1.301401 CGGCCACGACCTGAAAAGA 60.301 57.895 2.24 0.00 44.60 2.52
3508 3671 1.597027 ACGGCCACGACCTGAAAAG 60.597 57.895 2.24 0.00 44.60 2.27
3550 3737 1.804748 GTTCACTTCATTCCACGACCC 59.195 52.381 0.00 0.00 0.00 4.46
3597 3784 2.447408 AAAAGAAAAGGGGTCACCGT 57.553 45.000 0.00 0.00 46.96 4.83
3621 3808 5.542635 AGTTAAAAGAAAAGGATGTTCCCCC 59.457 40.000 0.00 0.00 37.19 5.40
3671 3858 8.854979 TTGTTGTCTTTTCATTACATTGTCTG 57.145 30.769 0.00 0.00 0.00 3.51
3724 3911 4.079970 TGGCCAATACGGTTTTTGATGTA 58.920 39.130 0.61 0.00 36.97 2.29
3737 3924 4.016444 TGAAGGAACAAGATGGCCAATAC 58.984 43.478 10.96 4.46 0.00 1.89
3759 3946 3.419759 GACGGACGGCGTGCAATT 61.420 61.111 30.11 14.33 0.00 2.32
3779 3966 2.738314 GGTTCAATGCATTTGTCAAGCC 59.262 45.455 9.83 2.03 36.65 4.35
3784 3971 2.730928 CCGTTGGTTCAATGCATTTGTC 59.269 45.455 9.83 2.71 36.65 3.18
3802 3989 4.315803 CATGTGTCTCTTTTCCTTACCGT 58.684 43.478 0.00 0.00 0.00 4.83
3856 4043 7.732593 ACCTATATTTGCTAGTCTCCTCTTGAT 59.267 37.037 0.00 0.00 0.00 2.57
3872 4059 7.040823 GGCTTCTTCTGATTGGACCTATATTTG 60.041 40.741 0.00 0.00 0.00 2.32
3952 4139 5.391312 AGGCACAACCAATTTATCAAGTC 57.609 39.130 0.00 0.00 43.14 3.01
3978 4165 5.163141 TGAGTTCAGTCAACAATAAAGGGGA 60.163 40.000 0.00 0.00 37.48 4.81
3996 4183 1.728971 CTCGACTTGGCACATGAGTTC 59.271 52.381 0.00 0.00 39.30 3.01
4034 4221 5.464389 GCAAACATTGTTTCTTCATGAGCTT 59.536 36.000 11.78 0.00 0.00 3.74
4040 4227 4.582701 TCCGCAAACATTGTTTCTTCAT 57.417 36.364 11.78 0.00 0.00 2.57
4104 4291 1.959985 TGGCGGAAAAGCAAAAGATCA 59.040 42.857 0.00 0.00 39.27 2.92
4126 4313 4.074627 TCCACGTTGTATCTCCAAAACA 57.925 40.909 0.00 0.00 0.00 2.83
4127 4314 5.427036 TTTCCACGTTGTATCTCCAAAAC 57.573 39.130 0.00 0.00 0.00 2.43
4168 4355 6.289064 GTTGGAAAAGTAGACTTCAAGGAGA 58.711 40.000 0.00 0.00 34.61 3.71
4190 4377 2.676748 TGATGCAAGGTCTTTTGGGTT 58.323 42.857 0.00 0.00 0.00 4.11
4217 4404 7.630242 ATGGTCATAACTTTCGATTCACAAT 57.370 32.000 0.00 0.00 0.00 2.71
4223 4410 6.194796 CCACAATGGTCATAACTTTCGATT 57.805 37.500 0.00 0.00 31.35 3.34
4270 4457 3.685139 AAAGCTTCTCGGATTCTCACA 57.315 42.857 0.00 0.00 0.00 3.58
4272 4459 4.271696 TGAAAAGCTTCTCGGATTCTCA 57.728 40.909 0.00 0.00 32.33 3.27
4316 4503 2.424302 CCTCCACGGTCCAAACGT 59.576 61.111 0.00 0.00 46.82 3.99
4318 4505 2.258726 GCACCTCCACGGTCCAAAC 61.259 63.158 0.00 0.00 44.93 2.93
4327 4514 4.083862 GGTCCTCCGCACCTCCAC 62.084 72.222 0.00 0.00 0.00 4.02
4358 4545 0.905357 ACAAGATCTCTCCCGTTGGG 59.095 55.000 0.00 0.00 46.11 4.12
4361 4548 2.164624 CGAGAACAAGATCTCTCCCGTT 59.835 50.000 0.00 0.00 43.00 4.44
4369 4556 6.766467 ACCTAACAAAAACGAGAACAAGATCT 59.234 34.615 0.00 0.00 0.00 2.75
4374 4561 6.497785 TGAACCTAACAAAAACGAGAACAA 57.502 33.333 0.00 0.00 0.00 2.83
4386 4573 3.537580 AGCAAGACGTTGAACCTAACAA 58.462 40.909 0.00 0.00 35.46 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.