Multiple sequence alignment - TraesCS2B01G070600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G070600 chr2B 100.000 4148 0 0 1 4148 37356841 37360988 0.000000e+00 7661.0
1 TraesCS2B01G070600 chr2B 92.031 3526 193 41 673 4148 37014451 37017938 0.000000e+00 4874.0
2 TraesCS2B01G070600 chr2B 90.165 3823 260 56 410 4148 37232077 37235867 0.000000e+00 4870.0
3 TraesCS2B01G070600 chr2B 90.034 3823 265 56 410 4148 37249235 37253025 0.000000e+00 4843.0
4 TraesCS2B01G070600 chr2B 93.854 2587 136 12 1243 3816 37215745 37218321 0.000000e+00 3875.0
5 TraesCS2B01G070600 chr2B 92.330 1695 102 16 616 2287 37123613 37125302 0.000000e+00 2385.0
6 TraesCS2B01G070600 chr2B 91.938 1228 88 6 2928 4148 37142949 37144172 0.000000e+00 1709.0
7 TraesCS2B01G070600 chr2B 89.320 206 21 1 410 614 37215513 37215718 1.480000e-64 257.0
8 TraesCS2B01G070600 chr2B 93.671 158 10 0 3991 4148 37218320 37218477 1.930000e-58 237.0
9 TraesCS2B01G070600 chr2A 90.024 2877 185 39 408 3227 24572639 24569808 0.000000e+00 3629.0
10 TraesCS2B01G070600 chr2A 90.024 2877 186 38 408 3227 24602029 24599197 0.000000e+00 3629.0
11 TraesCS2B01G070600 chr2A 89.920 2877 189 38 408 3227 25639564 25642396 0.000000e+00 3613.0
12 TraesCS2B01G070600 chr2A 88.072 1509 136 30 576 2057 24545493 24544002 0.000000e+00 1749.0
13 TraesCS2B01G070600 chr2A 83.739 781 81 22 3267 4036 24568348 24567603 0.000000e+00 697.0
14 TraesCS2B01G070600 chr2A 83.739 781 79 23 3267 4036 24597737 24596994 0.000000e+00 695.0
15 TraesCS2B01G070600 chr2A 90.000 160 12 4 233 389 218122246 218122404 1.950000e-48 204.0
16 TraesCS2B01G070600 chr2A 90.132 152 13 2 237 387 695414310 695414160 3.270000e-46 196.0
17 TraesCS2B01G070600 chr1A 90.024 2877 186 38 408 3227 534356329 534359161 0.000000e+00 3629.0
18 TraesCS2B01G070600 chr1A 84.546 893 92 26 3267 4148 534360739 534361596 0.000000e+00 843.0
19 TraesCS2B01G070600 chrUn 89.572 1918 119 29 496 2374 366633223 366635098 0.000000e+00 2359.0
20 TraesCS2B01G070600 chrUn 91.157 769 49 8 2476 3227 228952553 228951787 0.000000e+00 1026.0
21 TraesCS2B01G070600 chrUn 82.744 933 79 31 408 1299 342306555 342305664 0.000000e+00 756.0
22 TraesCS2B01G070600 chrUn 90.058 513 30 7 2733 3227 403354802 403354293 0.000000e+00 645.0
23 TraesCS2B01G070600 chrUn 90.058 513 30 7 2733 3227 457518995 457519504 0.000000e+00 645.0
24 TraesCS2B01G070600 chrUn 84.364 582 58 17 3267 3844 460996573 460996021 1.310000e-149 540.0
25 TraesCS2B01G070600 chrUn 88.612 281 25 4 3875 4148 338620178 338619898 6.640000e-88 335.0
26 TraesCS2B01G070600 chrUn 88.612 281 25 4 3875 4148 444705744 444706024 6.640000e-88 335.0
27 TraesCS2B01G070600 chr2D 84.538 2296 270 53 845 3080 23046616 23044346 0.000000e+00 2194.0
28 TraesCS2B01G070600 chr2D 82.598 2086 263 57 1137 3176 23026936 23024905 0.000000e+00 1749.0
29 TraesCS2B01G070600 chr2D 86.646 1610 146 35 479 2057 23054726 23053155 0.000000e+00 1718.0
30 TraesCS2B01G070600 chr2D 86.441 236 31 1 1 235 446895982 446896217 1.480000e-64 257.0
31 TraesCS2B01G070600 chr2D 84.120 233 36 1 1 232 159863467 159863699 1.500000e-54 224.0
32 TraesCS2B01G070600 chr2D 84.416 231 27 9 619 847 23027669 23027446 6.980000e-53 219.0
33 TraesCS2B01G070600 chr2D 92.763 152 9 2 237 387 555946542 555946392 6.980000e-53 219.0
34 TraesCS2B01G070600 chr7A 85.957 235 31 2 1 234 681581669 681581436 2.480000e-62 250.0
35 TraesCS2B01G070600 chr7A 89.677 155 14 1 237 389 115736260 115736414 3.270000e-46 196.0
36 TraesCS2B01G070600 chr7A 87.425 167 17 4 225 388 115825913 115825748 5.470000e-44 189.0
37 TraesCS2B01G070600 chr6D 90.116 172 13 4 237 406 390732569 390732738 1.940000e-53 220.0
38 TraesCS2B01G070600 chr4D 83.691 233 35 3 1 231 502077829 502078060 2.510000e-52 217.0
39 TraesCS2B01G070600 chr4B 82.845 239 37 2 1 235 520518232 520517994 1.170000e-50 211.0
40 TraesCS2B01G070600 chr4B 81.116 233 41 3 1 231 666968805 666968574 2.550000e-42 183.0
41 TraesCS2B01G070600 chr7D 84.071 226 27 6 1 222 93602206 93602426 4.200000e-50 209.0
42 TraesCS2B01G070600 chr3A 89.091 165 13 5 229 389 581251691 581251528 2.530000e-47 200.0
43 TraesCS2B01G070600 chr5B 82.609 230 34 6 3 231 629900522 629900746 9.100000e-47 198.0
44 TraesCS2B01G070600 chr4A 82.051 234 41 1 1 233 39898988 39899221 9.100000e-47 198.0
45 TraesCS2B01G070600 chr3B 89.873 158 9 3 237 389 637087697 637087852 3.270000e-46 196.0
46 TraesCS2B01G070600 chr1D 78.193 321 48 12 176 481 443741610 443741923 7.080000e-43 185.0
47 TraesCS2B01G070600 chr1D 87.143 70 8 1 411 479 312965640 312965571 1.240000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G070600 chr2B 37356841 37360988 4147 False 7661.000000 7661 100.000000 1 4148 1 chr2B.!!$F6 4147
1 TraesCS2B01G070600 chr2B 37014451 37017938 3487 False 4874.000000 4874 92.031000 673 4148 1 chr2B.!!$F1 3475
2 TraesCS2B01G070600 chr2B 37232077 37235867 3790 False 4870.000000 4870 90.165000 410 4148 1 chr2B.!!$F4 3738
3 TraesCS2B01G070600 chr2B 37249235 37253025 3790 False 4843.000000 4843 90.034000 410 4148 1 chr2B.!!$F5 3738
4 TraesCS2B01G070600 chr2B 37123613 37125302 1689 False 2385.000000 2385 92.330000 616 2287 1 chr2B.!!$F2 1671
5 TraesCS2B01G070600 chr2B 37142949 37144172 1223 False 1709.000000 1709 91.938000 2928 4148 1 chr2B.!!$F3 1220
6 TraesCS2B01G070600 chr2B 37215513 37218477 2964 False 1456.333333 3875 92.281667 410 4148 3 chr2B.!!$F7 3738
7 TraesCS2B01G070600 chr2A 25639564 25642396 2832 False 3613.000000 3613 89.920000 408 3227 1 chr2A.!!$F1 2819
8 TraesCS2B01G070600 chr2A 24567603 24572639 5036 True 2163.000000 3629 86.881500 408 4036 2 chr2A.!!$R3 3628
9 TraesCS2B01G070600 chr2A 24596994 24602029 5035 True 2162.000000 3629 86.881500 408 4036 2 chr2A.!!$R4 3628
10 TraesCS2B01G070600 chr2A 24544002 24545493 1491 True 1749.000000 1749 88.072000 576 2057 1 chr2A.!!$R1 1481
11 TraesCS2B01G070600 chr1A 534356329 534361596 5267 False 2236.000000 3629 87.285000 408 4148 2 chr1A.!!$F1 3740
12 TraesCS2B01G070600 chrUn 366633223 366635098 1875 False 2359.000000 2359 89.572000 496 2374 1 chrUn.!!$F1 1878
13 TraesCS2B01G070600 chrUn 228951787 228952553 766 True 1026.000000 1026 91.157000 2476 3227 1 chrUn.!!$R1 751
14 TraesCS2B01G070600 chrUn 342305664 342306555 891 True 756.000000 756 82.744000 408 1299 1 chrUn.!!$R3 891
15 TraesCS2B01G070600 chrUn 403354293 403354802 509 True 645.000000 645 90.058000 2733 3227 1 chrUn.!!$R4 494
16 TraesCS2B01G070600 chrUn 457518995 457519504 509 False 645.000000 645 90.058000 2733 3227 1 chrUn.!!$F3 494
17 TraesCS2B01G070600 chrUn 460996021 460996573 552 True 540.000000 540 84.364000 3267 3844 1 chrUn.!!$R5 577
18 TraesCS2B01G070600 chr2D 23044346 23046616 2270 True 2194.000000 2194 84.538000 845 3080 1 chr2D.!!$R1 2235
19 TraesCS2B01G070600 chr2D 23053155 23054726 1571 True 1718.000000 1718 86.646000 479 2057 1 chr2D.!!$R2 1578
20 TraesCS2B01G070600 chr2D 23024905 23027669 2764 True 984.000000 1749 83.507000 619 3176 2 chr2D.!!$R4 2557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 1.021202 TGTGTTTCAGTGGCCGAAAG 58.979 50.0 4.71 0.0 33.20 2.62 F
155 156 1.021968 GTGTTTCAGTGGCCGAAAGT 58.978 50.0 4.71 0.0 33.20 2.66 F
156 157 1.021202 TGTTTCAGTGGCCGAAAGTG 58.979 50.0 4.71 0.0 33.20 3.16 F
1240 1629 0.181350 CTTGATGCCACCCTCCCTAC 59.819 60.0 0.00 0.0 0.00 3.18 F
1851 2266 0.181114 TGGCTATGATGCAGGTGACC 59.819 55.0 0.00 0.0 34.04 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1121 1492 1.827969 CCCTTGTTGACGAGAGGAGAT 59.172 52.381 0.00 0.0 0.00 2.75 R
1216 1605 1.852157 AGGGTGGCATCAAGGACCA 60.852 57.895 0.00 0.0 0.00 4.02 R
1456 1866 1.880894 CCGTACTCGAAGCTGTGGA 59.119 57.895 0.00 0.0 39.71 4.02 R
2816 3259 0.332632 CCCATTCTTGGCCTTCTCCA 59.667 55.000 3.32 0.0 42.15 3.86 R
3488 5502 0.401738 TCCAAGACAAGGAAGCCAGG 59.598 55.000 0.00 0.0 30.71 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 4.446857 TTTTTGTCTTGTTCTCGTAGCG 57.553 40.909 0.00 0.00 0.00 4.26
68 69 3.358707 TTTGTCTTGTTCTCGTAGCGA 57.641 42.857 0.00 0.00 0.00 4.93
69 70 3.358707 TTGTCTTGTTCTCGTAGCGAA 57.641 42.857 0.00 0.00 34.74 4.70
70 71 3.358707 TGTCTTGTTCTCGTAGCGAAA 57.641 42.857 0.00 0.00 31.09 3.46
71 72 3.708890 TGTCTTGTTCTCGTAGCGAAAA 58.291 40.909 0.00 0.00 31.09 2.29
72 73 4.114073 TGTCTTGTTCTCGTAGCGAAAAA 58.886 39.130 0.00 0.00 31.09 1.94
73 74 4.748102 TGTCTTGTTCTCGTAGCGAAAAAT 59.252 37.500 0.00 0.00 31.09 1.82
74 75 5.235616 TGTCTTGTTCTCGTAGCGAAAAATT 59.764 36.000 0.00 0.00 31.09 1.82
75 76 5.560378 GTCTTGTTCTCGTAGCGAAAAATTG 59.440 40.000 0.00 0.00 31.09 2.32
76 77 4.398549 TGTTCTCGTAGCGAAAAATTGG 57.601 40.909 0.00 0.00 31.09 3.16
77 78 3.810941 TGTTCTCGTAGCGAAAAATTGGT 59.189 39.130 0.00 0.00 31.09 3.67
78 79 4.989797 TGTTCTCGTAGCGAAAAATTGGTA 59.010 37.500 0.00 0.00 31.09 3.25
79 80 5.466058 TGTTCTCGTAGCGAAAAATTGGTAA 59.534 36.000 0.00 0.00 31.09 2.85
80 81 6.018098 TGTTCTCGTAGCGAAAAATTGGTAAA 60.018 34.615 0.00 0.00 31.09 2.01
81 82 6.730960 TCTCGTAGCGAAAAATTGGTAAAT 57.269 33.333 0.00 0.00 34.74 1.40
82 83 7.136289 TCTCGTAGCGAAAAATTGGTAAATT 57.864 32.000 0.00 0.00 34.80 1.82
83 84 8.254178 TCTCGTAGCGAAAAATTGGTAAATTA 57.746 30.769 0.00 0.00 33.27 1.40
84 85 8.885722 TCTCGTAGCGAAAAATTGGTAAATTAT 58.114 29.630 0.00 0.00 33.27 1.28
85 86 8.829514 TCGTAGCGAAAAATTGGTAAATTATG 57.170 30.769 0.00 0.00 31.67 1.90
86 87 7.429920 TCGTAGCGAAAAATTGGTAAATTATGC 59.570 33.333 0.00 0.00 31.67 3.14
87 88 7.219154 CGTAGCGAAAAATTGGTAAATTATGCA 59.781 33.333 0.00 0.00 34.84 3.96
88 89 7.289587 AGCGAAAAATTGGTAAATTATGCAC 57.710 32.000 0.00 0.00 34.84 4.57
89 90 7.096551 AGCGAAAAATTGGTAAATTATGCACT 58.903 30.769 0.00 0.00 34.84 4.40
90 91 7.275560 AGCGAAAAATTGGTAAATTATGCACTC 59.724 33.333 0.00 0.00 34.84 3.51
91 92 7.464045 GCGAAAAATTGGTAAATTATGCACTCC 60.464 37.037 0.00 0.00 34.84 3.85
92 93 7.543868 CGAAAAATTGGTAAATTATGCACTCCA 59.456 33.333 0.00 0.00 34.84 3.86
93 94 9.213799 GAAAAATTGGTAAATTATGCACTCCAA 57.786 29.630 0.00 0.00 34.84 3.53
94 95 9.737844 AAAAATTGGTAAATTATGCACTCCAAT 57.262 25.926 0.00 0.00 43.19 3.16
108 109 7.878547 TGCACTCCAATATATCAAAATGTCA 57.121 32.000 0.00 0.00 0.00 3.58
109 110 8.467963 TGCACTCCAATATATCAAAATGTCAT 57.532 30.769 0.00 0.00 0.00 3.06
110 111 8.570488 TGCACTCCAATATATCAAAATGTCATC 58.430 33.333 0.00 0.00 0.00 2.92
111 112 7.747799 GCACTCCAATATATCAAAATGTCATCG 59.252 37.037 0.00 0.00 0.00 3.84
112 113 8.992073 CACTCCAATATATCAAAATGTCATCGA 58.008 33.333 0.00 0.00 0.00 3.59
113 114 9.559732 ACTCCAATATATCAAAATGTCATCGAA 57.440 29.630 0.00 0.00 0.00 3.71
127 128 8.847444 AATGTCATCGAATGAAATAAAGAAGC 57.153 30.769 0.00 0.00 41.69 3.86
128 129 7.376435 TGTCATCGAATGAAATAAAGAAGCA 57.624 32.000 0.00 0.00 41.69 3.91
129 130 7.815641 TGTCATCGAATGAAATAAAGAAGCAA 58.184 30.769 0.00 0.00 41.69 3.91
130 131 8.296000 TGTCATCGAATGAAATAAAGAAGCAAA 58.704 29.630 0.00 0.00 41.69 3.68
131 132 8.792538 GTCATCGAATGAAATAAAGAAGCAAAG 58.207 33.333 0.00 0.00 41.69 2.77
132 133 8.729756 TCATCGAATGAAATAAAGAAGCAAAGA 58.270 29.630 0.00 0.00 36.11 2.52
133 134 9.345517 CATCGAATGAAATAAAGAAGCAAAGAA 57.654 29.630 0.00 0.00 0.00 2.52
134 135 9.912634 ATCGAATGAAATAAAGAAGCAAAGAAA 57.087 25.926 0.00 0.00 0.00 2.52
135 136 9.912634 TCGAATGAAATAAAGAAGCAAAGAAAT 57.087 25.926 0.00 0.00 0.00 2.17
136 137 9.947897 CGAATGAAATAAAGAAGCAAAGAAATG 57.052 29.630 0.00 0.00 0.00 2.32
139 140 9.768662 ATGAAATAAAGAAGCAAAGAAATGTGT 57.231 25.926 0.00 0.00 0.00 3.72
140 141 9.598517 TGAAATAAAGAAGCAAAGAAATGTGTT 57.401 25.926 0.00 0.00 0.00 3.32
143 144 9.598517 AATAAAGAAGCAAAGAAATGTGTTTCA 57.401 25.926 4.01 0.00 44.92 2.69
144 145 7.529880 AAAGAAGCAAAGAAATGTGTTTCAG 57.470 32.000 4.01 0.00 44.92 3.02
145 146 6.212888 AGAAGCAAAGAAATGTGTTTCAGT 57.787 33.333 4.01 0.00 44.92 3.41
146 147 6.038356 AGAAGCAAAGAAATGTGTTTCAGTG 58.962 36.000 4.01 2.71 44.92 3.66
147 148 4.685924 AGCAAAGAAATGTGTTTCAGTGG 58.314 39.130 4.01 0.00 44.92 4.00
148 149 3.245990 GCAAAGAAATGTGTTTCAGTGGC 59.754 43.478 4.01 0.00 44.92 5.01
149 150 3.733443 AAGAAATGTGTTTCAGTGGCC 57.267 42.857 0.00 0.00 44.92 5.36
150 151 1.608590 AGAAATGTGTTTCAGTGGCCG 59.391 47.619 0.00 0.00 44.92 6.13
151 152 1.606668 GAAATGTGTTTCAGTGGCCGA 59.393 47.619 0.00 0.00 42.61 5.54
152 153 1.686355 AATGTGTTTCAGTGGCCGAA 58.314 45.000 0.00 0.00 0.00 4.30
153 154 1.686355 ATGTGTTTCAGTGGCCGAAA 58.314 45.000 0.00 0.00 0.00 3.46
154 155 1.021202 TGTGTTTCAGTGGCCGAAAG 58.979 50.000 4.71 0.00 33.20 2.62
155 156 1.021968 GTGTTTCAGTGGCCGAAAGT 58.978 50.000 4.71 0.00 33.20 2.66
156 157 1.021202 TGTTTCAGTGGCCGAAAGTG 58.979 50.000 4.71 0.00 33.20 3.16
157 158 1.305201 GTTTCAGTGGCCGAAAGTGA 58.695 50.000 4.71 0.02 33.20 3.41
158 159 1.673920 GTTTCAGTGGCCGAAAGTGAA 59.326 47.619 7.56 7.56 35.65 3.18
159 160 2.045561 TTCAGTGGCCGAAAGTGAAA 57.954 45.000 8.91 0.00 34.76 2.69
160 161 2.270352 TCAGTGGCCGAAAGTGAAAT 57.730 45.000 0.00 0.00 0.00 2.17
161 162 2.151202 TCAGTGGCCGAAAGTGAAATC 58.849 47.619 0.00 0.00 0.00 2.17
162 163 1.200020 CAGTGGCCGAAAGTGAAATCC 59.800 52.381 0.00 0.00 0.00 3.01
163 164 1.202879 AGTGGCCGAAAGTGAAATCCA 60.203 47.619 0.00 0.00 0.00 3.41
164 165 1.611491 GTGGCCGAAAGTGAAATCCAA 59.389 47.619 0.00 0.00 0.00 3.53
165 166 2.035321 GTGGCCGAAAGTGAAATCCAAA 59.965 45.455 0.00 0.00 0.00 3.28
166 167 2.896685 TGGCCGAAAGTGAAATCCAAAT 59.103 40.909 0.00 0.00 0.00 2.32
167 168 3.253230 GGCCGAAAGTGAAATCCAAATG 58.747 45.455 0.00 0.00 0.00 2.32
168 169 3.056891 GGCCGAAAGTGAAATCCAAATGA 60.057 43.478 0.00 0.00 0.00 2.57
169 170 4.555262 GCCGAAAGTGAAATCCAAATGAA 58.445 39.130 0.00 0.00 0.00 2.57
170 171 4.987912 GCCGAAAGTGAAATCCAAATGAAA 59.012 37.500 0.00 0.00 0.00 2.69
171 172 5.465056 GCCGAAAGTGAAATCCAAATGAAAA 59.535 36.000 0.00 0.00 0.00 2.29
172 173 6.018343 GCCGAAAGTGAAATCCAAATGAAAAA 60.018 34.615 0.00 0.00 0.00 1.94
173 174 7.307930 GCCGAAAGTGAAATCCAAATGAAAAAT 60.308 33.333 0.00 0.00 0.00 1.82
174 175 9.202273 CCGAAAGTGAAATCCAAATGAAAAATA 57.798 29.630 0.00 0.00 0.00 1.40
210 211 8.763984 ATATATAAGGTATCGGTTAGGTCCAG 57.236 38.462 0.00 0.00 0.00 3.86
211 212 2.842645 AGGTATCGGTTAGGTCCAGT 57.157 50.000 0.00 0.00 0.00 4.00
212 213 2.385803 AGGTATCGGTTAGGTCCAGTG 58.614 52.381 0.00 0.00 0.00 3.66
213 214 2.024655 AGGTATCGGTTAGGTCCAGTGA 60.025 50.000 0.00 0.00 0.00 3.41
214 215 2.762327 GGTATCGGTTAGGTCCAGTGAA 59.238 50.000 0.00 0.00 0.00 3.18
215 216 3.196254 GGTATCGGTTAGGTCCAGTGAAA 59.804 47.826 0.00 0.00 0.00 2.69
216 217 4.322953 GGTATCGGTTAGGTCCAGTGAAAA 60.323 45.833 0.00 0.00 0.00 2.29
217 218 3.116079 TCGGTTAGGTCCAGTGAAAAC 57.884 47.619 0.00 0.00 0.00 2.43
218 219 2.701951 TCGGTTAGGTCCAGTGAAAACT 59.298 45.455 0.00 0.00 0.00 2.66
219 220 3.135167 TCGGTTAGGTCCAGTGAAAACTT 59.865 43.478 0.00 0.00 0.00 2.66
220 221 4.344679 TCGGTTAGGTCCAGTGAAAACTTA 59.655 41.667 0.00 0.00 0.00 2.24
221 222 4.689345 CGGTTAGGTCCAGTGAAAACTTAG 59.311 45.833 0.00 0.00 0.00 2.18
222 223 5.618236 GGTTAGGTCCAGTGAAAACTTAGT 58.382 41.667 0.00 0.00 0.00 2.24
223 224 5.469084 GGTTAGGTCCAGTGAAAACTTAGTG 59.531 44.000 0.00 0.00 0.00 2.74
224 225 6.285990 GTTAGGTCCAGTGAAAACTTAGTGA 58.714 40.000 0.00 0.00 0.00 3.41
225 226 5.367945 AGGTCCAGTGAAAACTTAGTGAA 57.632 39.130 0.00 0.00 0.00 3.18
226 227 5.368989 AGGTCCAGTGAAAACTTAGTGAAG 58.631 41.667 0.00 0.00 38.76 3.02
228 229 6.099269 AGGTCCAGTGAAAACTTAGTGAAGTA 59.901 38.462 0.00 0.00 45.50 2.24
229 230 6.764560 GGTCCAGTGAAAACTTAGTGAAGTAA 59.235 38.462 0.00 0.00 45.50 2.24
230 231 7.281549 GGTCCAGTGAAAACTTAGTGAAGTAAA 59.718 37.037 0.00 0.00 45.50 2.01
231 232 8.671028 GTCCAGTGAAAACTTAGTGAAGTAAAA 58.329 33.333 0.00 0.00 45.50 1.52
232 233 9.233649 TCCAGTGAAAACTTAGTGAAGTAAAAA 57.766 29.630 0.00 0.00 45.50 1.94
275 276 5.215252 TCTAGATGTGCCCTAAGTATTGC 57.785 43.478 0.00 0.00 0.00 3.56
276 277 3.931907 AGATGTGCCCTAAGTATTGCA 57.068 42.857 0.00 0.00 0.00 4.08
281 282 3.931907 TGCCCTAAGTATTGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
283 284 5.366482 TGCCCTAAGTATTGCACATCTAA 57.634 39.130 0.00 0.00 0.00 2.10
284 285 5.368145 TGCCCTAAGTATTGCACATCTAAG 58.632 41.667 0.00 0.00 0.00 2.18
285 286 5.104527 TGCCCTAAGTATTGCACATCTAAGT 60.105 40.000 0.00 0.00 0.00 2.24
286 287 5.467063 GCCCTAAGTATTGCACATCTAAGTC 59.533 44.000 0.00 0.00 0.00 3.01
287 288 5.992217 CCCTAAGTATTGCACATCTAAGTCC 59.008 44.000 0.00 0.00 0.00 3.85
288 289 6.183361 CCCTAAGTATTGCACATCTAAGTCCT 60.183 42.308 0.00 0.00 0.00 3.85
289 290 7.015292 CCCTAAGTATTGCACATCTAAGTCCTA 59.985 40.741 0.00 0.00 0.00 2.94
290 291 8.589338 CCTAAGTATTGCACATCTAAGTCCTAT 58.411 37.037 0.00 0.00 0.00 2.57
291 292 9.416794 CTAAGTATTGCACATCTAAGTCCTATG 57.583 37.037 0.00 0.00 0.00 2.23
292 293 7.366847 AGTATTGCACATCTAAGTCCTATGT 57.633 36.000 0.00 0.00 34.22 2.29
293 294 7.437748 AGTATTGCACATCTAAGTCCTATGTC 58.562 38.462 0.00 0.00 31.60 3.06
294 295 5.675684 TTGCACATCTAAGTCCTATGTCA 57.324 39.130 0.00 0.00 31.60 3.58
295 296 5.876651 TGCACATCTAAGTCCTATGTCAT 57.123 39.130 0.00 0.00 31.60 3.06
296 297 6.239217 TGCACATCTAAGTCCTATGTCATT 57.761 37.500 0.00 0.00 31.60 2.57
297 298 7.360113 TGCACATCTAAGTCCTATGTCATTA 57.640 36.000 0.00 0.00 31.60 1.90
298 299 7.791029 TGCACATCTAAGTCCTATGTCATTAA 58.209 34.615 0.00 0.00 31.60 1.40
299 300 8.432013 TGCACATCTAAGTCCTATGTCATTAAT 58.568 33.333 0.00 0.00 31.60 1.40
300 301 9.277783 GCACATCTAAGTCCTATGTCATTAATT 57.722 33.333 0.00 0.00 31.60 1.40
321 322 9.781834 TTAATTTTACATAGAAATTCGTGCAGG 57.218 29.630 0.00 0.00 37.71 4.85
322 323 4.875544 TTACATAGAAATTCGTGCAGGC 57.124 40.909 0.35 0.00 0.00 4.85
323 324 2.710377 ACATAGAAATTCGTGCAGGCA 58.290 42.857 0.35 0.00 0.00 4.75
324 325 3.282021 ACATAGAAATTCGTGCAGGCAT 58.718 40.909 0.35 0.00 0.00 4.40
325 326 3.696051 ACATAGAAATTCGTGCAGGCATT 59.304 39.130 0.35 0.00 0.00 3.56
326 327 4.158394 ACATAGAAATTCGTGCAGGCATTT 59.842 37.500 15.23 15.23 0.00 2.32
327 328 3.665745 AGAAATTCGTGCAGGCATTTT 57.334 38.095 16.16 8.94 0.00 1.82
328 329 3.993920 AGAAATTCGTGCAGGCATTTTT 58.006 36.364 16.16 9.46 0.00 1.94
351 352 6.735678 TTTTGCCTTTGGTCTTTTTCTTTC 57.264 33.333 0.00 0.00 0.00 2.62
352 353 5.675684 TTGCCTTTGGTCTTTTTCTTTCT 57.324 34.783 0.00 0.00 0.00 2.52
353 354 6.783708 TTGCCTTTGGTCTTTTTCTTTCTA 57.216 33.333 0.00 0.00 0.00 2.10
354 355 6.391227 TGCCTTTGGTCTTTTTCTTTCTAG 57.609 37.500 0.00 0.00 0.00 2.43
355 356 5.891551 TGCCTTTGGTCTTTTTCTTTCTAGT 59.108 36.000 0.00 0.00 0.00 2.57
356 357 6.379988 TGCCTTTGGTCTTTTTCTTTCTAGTT 59.620 34.615 0.00 0.00 0.00 2.24
357 358 7.093509 TGCCTTTGGTCTTTTTCTTTCTAGTTT 60.094 33.333 0.00 0.00 0.00 2.66
358 359 7.222805 GCCTTTGGTCTTTTTCTTTCTAGTTTG 59.777 37.037 0.00 0.00 0.00 2.93
359 360 8.466798 CCTTTGGTCTTTTTCTTTCTAGTTTGA 58.533 33.333 0.00 0.00 0.00 2.69
362 363 9.801873 TTGGTCTTTTTCTTTCTAGTTTGATTG 57.198 29.630 0.00 0.00 0.00 2.67
363 364 9.184523 TGGTCTTTTTCTTTCTAGTTTGATTGA 57.815 29.630 0.00 0.00 0.00 2.57
364 365 9.670719 GGTCTTTTTCTTTCTAGTTTGATTGAG 57.329 33.333 0.00 0.00 0.00 3.02
369 370 8.964476 TTTCTTTCTAGTTTGATTGAGTCACT 57.036 30.769 0.00 0.00 36.32 3.41
370 371 8.964476 TTCTTTCTAGTTTGATTGAGTCACTT 57.036 30.769 0.00 0.00 36.32 3.16
372 373 9.698309 TCTTTCTAGTTTGATTGAGTCACTTAG 57.302 33.333 0.00 0.00 36.32 2.18
373 374 9.698309 CTTTCTAGTTTGATTGAGTCACTTAGA 57.302 33.333 0.00 0.00 36.32 2.10
375 376 9.645059 TTCTAGTTTGATTGAGTCACTTAGATG 57.355 33.333 0.00 0.00 36.32 2.90
376 377 8.807118 TCTAGTTTGATTGAGTCACTTAGATGT 58.193 33.333 0.00 0.00 36.32 3.06
377 378 7.664082 AGTTTGATTGAGTCACTTAGATGTG 57.336 36.000 0.00 0.00 36.32 3.21
378 379 6.148480 AGTTTGATTGAGTCACTTAGATGTGC 59.852 38.462 0.00 0.00 36.32 4.57
379 380 5.151297 TGATTGAGTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
380 381 5.550290 TGATTGAGTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
381 382 6.175471 TGATTGAGTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
382 383 7.330262 TGATTGAGTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
383 384 7.823799 TGATTGAGTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
384 385 7.977789 TTGAGTCACTTAGATGTGCAATAAA 57.022 32.000 0.00 0.00 37.81 1.40
385 386 8.565896 TTGAGTCACTTAGATGTGCAATAAAT 57.434 30.769 0.00 0.00 37.81 1.40
386 387 9.665719 TTGAGTCACTTAGATGTGCAATAAATA 57.334 29.630 0.00 0.00 37.81 1.40
387 388 9.317936 TGAGTCACTTAGATGTGCAATAAATAG 57.682 33.333 0.00 0.00 37.81 1.73
388 389 9.534565 GAGTCACTTAGATGTGCAATAAATAGA 57.465 33.333 0.00 0.00 37.81 1.98
391 392 9.836864 TCACTTAGATGTGCAATAAATAGATGT 57.163 29.630 0.00 0.00 37.81 3.06
392 393 9.874215 CACTTAGATGTGCAATAAATAGATGTG 57.126 33.333 0.00 0.00 0.00 3.21
393 394 8.562892 ACTTAGATGTGCAATAAATAGATGTGC 58.437 33.333 0.00 0.00 35.75 4.57
394 395 6.323203 AGATGTGCAATAAATAGATGTGCC 57.677 37.500 0.00 0.00 34.25 5.01
395 396 4.916983 TGTGCAATAAATAGATGTGCCC 57.083 40.909 0.00 0.00 34.25 5.36
396 397 4.535781 TGTGCAATAAATAGATGTGCCCT 58.464 39.130 0.00 0.00 34.25 5.19
397 398 5.689835 TGTGCAATAAATAGATGTGCCCTA 58.310 37.500 0.00 0.00 34.25 3.53
398 399 5.764686 TGTGCAATAAATAGATGTGCCCTAG 59.235 40.000 0.00 0.00 34.25 3.02
399 400 5.997746 GTGCAATAAATAGATGTGCCCTAGA 59.002 40.000 0.00 0.00 34.25 2.43
400 401 5.997746 TGCAATAAATAGATGTGCCCTAGAC 59.002 40.000 0.00 0.00 34.25 2.59
401 402 5.997746 GCAATAAATAGATGTGCCCTAGACA 59.002 40.000 0.00 0.00 0.00 3.41
402 403 6.486657 GCAATAAATAGATGTGCCCTAGACAA 59.513 38.462 0.00 0.00 0.00 3.18
403 404 7.013274 GCAATAAATAGATGTGCCCTAGACAAA 59.987 37.037 0.00 0.00 0.00 2.83
404 405 8.345565 CAATAAATAGATGTGCCCTAGACAAAC 58.654 37.037 0.00 0.00 0.00 2.93
405 406 2.789409 AGATGTGCCCTAGACAAACC 57.211 50.000 0.00 0.00 0.00 3.27
406 407 1.066143 AGATGTGCCCTAGACAAACCG 60.066 52.381 0.00 0.00 0.00 4.44
420 421 5.623169 AGACAAACCGGTAAAAATACTCCA 58.377 37.500 8.00 0.00 0.00 3.86
421 422 5.471116 AGACAAACCGGTAAAAATACTCCAC 59.529 40.000 8.00 0.00 0.00 4.02
424 425 6.427853 ACAAACCGGTAAAAATACTCCACTAC 59.572 38.462 8.00 0.00 0.00 2.73
425 426 5.743636 ACCGGTAAAAATACTCCACTACA 57.256 39.130 4.49 0.00 0.00 2.74
434 435 8.843885 AAAAATACTCCACTACAGGTTTACTC 57.156 34.615 0.00 0.00 0.00 2.59
436 437 3.853207 ACTCCACTACAGGTTTACTCCA 58.147 45.455 0.00 0.00 0.00 3.86
440 441 2.559668 CACTACAGGTTTACTCCACCGA 59.440 50.000 0.00 0.00 39.56 4.69
464 465 7.273815 CGAATACTCCGCTATTTTTAGAGGATC 59.726 40.741 6.03 1.51 43.42 3.36
484 486 2.171870 TCGGTTAGAAATGCCTAAGGGG 59.828 50.000 0.00 0.00 38.36 4.79
534 536 5.811613 CGTTTTCTATACCGGTGGTTTCATA 59.188 40.000 19.93 4.72 37.09 2.15
623 649 2.171448 CCCTCAAATCTACCAGACCCAG 59.829 54.545 0.00 0.00 0.00 4.45
629 655 2.024176 TCTACCAGACCCAGCTTTGA 57.976 50.000 0.00 0.00 0.00 2.69
901 1021 4.216257 GTGGCATGTGGTAATGGATGATAC 59.784 45.833 0.00 0.00 0.00 2.24
902 1022 3.758554 GGCATGTGGTAATGGATGATACC 59.241 47.826 0.00 0.00 41.62 2.73
1015 1366 1.064060 GCAAGAACACAAACGAGCAGT 59.936 47.619 0.00 0.00 0.00 4.40
1016 1367 2.477863 GCAAGAACACAAACGAGCAGTT 60.478 45.455 0.00 0.00 46.76 3.16
1017 1368 3.242608 GCAAGAACACAAACGAGCAGTTA 60.243 43.478 0.00 0.00 43.37 2.24
1018 1369 4.518217 CAAGAACACAAACGAGCAGTTAG 58.482 43.478 0.00 0.00 43.37 2.34
1141 1512 1.257743 TCTCCTCTCGTCAACAAGGG 58.742 55.000 0.00 0.00 0.00 3.95
1211 1600 3.056328 GTCACCGCTTTGAGCCCC 61.056 66.667 0.00 0.00 38.18 5.80
1216 1605 4.394712 CGCTTTGAGCCCCGAGGT 62.395 66.667 0.00 0.00 38.18 3.85
1240 1629 0.181350 CTTGATGCCACCCTCCCTAC 59.819 60.000 0.00 0.00 0.00 3.18
1456 1866 1.004918 CGTTCAAGGAAGGACGGCT 60.005 57.895 0.00 0.00 30.17 5.52
1478 1888 3.823330 AGCTTCGAGTACGGCCGG 61.823 66.667 31.76 11.50 40.21 6.13
1851 2266 0.181114 TGGCTATGATGCAGGTGACC 59.819 55.000 0.00 0.00 34.04 4.02
1866 2281 2.897969 GGTGACCCTCTTCTACACTGAA 59.102 50.000 0.00 0.00 0.00 3.02
2141 2561 6.859112 ACTTCCATGATCACTAGTAGTGTT 57.141 37.500 25.83 19.48 46.03 3.32
2486 2922 3.369892 CGAGAACCATCCCAAGATTGAGT 60.370 47.826 0.00 0.00 0.00 3.41
2514 2950 1.833630 CTACCCTGGACTCATCAGCAA 59.166 52.381 0.00 0.00 0.00 3.91
2587 3023 1.074405 AGCTTTGAGGTGGCATCAGAA 59.926 47.619 0.00 0.00 0.00 3.02
2740 3177 3.797039 TCGTTTGCATCTTAGAGGATGG 58.203 45.455 0.00 0.00 42.21 3.51
2988 3442 6.819397 AGCTATGTAGAAACCCTTTTTGTC 57.181 37.500 0.00 0.00 0.00 3.18
3068 3525 9.670719 GTATTCTTTTGTTTCTTGAAGGAAGAG 57.329 33.333 0.00 0.00 41.86 2.85
3075 3532 5.240183 TGTTTCTTGAAGGAAGAGCATCAAG 59.760 40.000 7.80 7.80 46.36 3.02
3265 5014 1.478654 GGTATCCCGGCATGGTCAATT 60.479 52.381 0.00 0.00 35.15 2.32
3274 5287 1.950484 GCATGGTCAATTGGTCGGAGT 60.950 52.381 5.42 0.00 0.00 3.85
3278 5291 0.676782 GTCAATTGGTCGGAGTGGGG 60.677 60.000 5.42 0.00 0.00 4.96
3280 5293 0.037590 CAATTGGTCGGAGTGGGGAA 59.962 55.000 0.00 0.00 0.00 3.97
3282 5295 0.037734 ATTGGTCGGAGTGGGGAAAC 59.962 55.000 0.00 0.00 0.00 2.78
3283 5296 1.346479 TTGGTCGGAGTGGGGAAACA 61.346 55.000 0.00 0.00 0.00 2.83
3284 5297 1.346479 TGGTCGGAGTGGGGAAACAA 61.346 55.000 0.00 0.00 0.00 2.83
3344 5358 5.581085 AGGTAAAAACGTACTCATGCTCATC 59.419 40.000 0.00 0.00 0.00 2.92
3382 5396 9.734620 TGTTTTTGTTGAATTGAGAGATTGTAG 57.265 29.630 0.00 0.00 0.00 2.74
3383 5397 9.185192 GTTTTTGTTGAATTGAGAGATTGTAGG 57.815 33.333 0.00 0.00 0.00 3.18
3426 5440 5.338056 CCGCCCTGGCTTATGTATAAGATAA 60.338 44.000 14.21 0.00 41.72 1.75
3488 5502 1.210722 GGAGGGGAGTCTTGAATCACC 59.789 57.143 10.99 10.99 39.47 4.02
3601 5616 2.844839 GGCCTCGGACCAGCCTAT 60.845 66.667 9.44 0.00 43.62 2.57
3608 5623 0.541863 CGGACCAGCCTATTTGGACT 59.458 55.000 0.00 0.00 39.08 3.85
3695 5710 1.488705 TTGGCAACCTCCTGATCGGT 61.489 55.000 0.00 0.00 34.27 4.69
3699 5714 1.191535 CAACCTCCTGATCGGTACCA 58.808 55.000 13.54 0.00 32.07 3.25
3730 5745 0.685097 TACCTTCTCGCTTGCCAAGT 59.315 50.000 6.28 0.00 0.00 3.16
3765 5786 3.764237 TCGAAGCTCCCTTAACAGTTT 57.236 42.857 0.00 0.00 0.00 2.66
3769 5790 3.857157 AGCTCCCTTAACAGTTTGTCA 57.143 42.857 0.00 0.00 0.00 3.58
3785 5806 7.147585 ACAGTTTGTCATCAATCTCCTATAGCT 60.148 37.037 0.00 0.00 33.09 3.32
3849 5873 4.662468 TTCGATGAAGATAGCTGAGCTT 57.338 40.909 14.14 0.00 40.44 3.74
3987 6018 2.591715 GTGCACCGCCTCACAACT 60.592 61.111 5.22 0.00 33.63 3.16
4076 6107 5.849510 TCTCCTCAAGAATTAACGACAACA 58.150 37.500 0.00 0.00 0.00 3.33
4112 6143 4.261801 GCACTTTAAGAGGCATTAGTGGA 58.738 43.478 0.00 0.00 34.92 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.114073 TCGCTACGAGAACAAGACAAAAA 58.886 39.130 0.00 0.00 0.00 1.94
47 48 3.708890 TCGCTACGAGAACAAGACAAAA 58.291 40.909 0.00 0.00 0.00 2.44
48 49 3.358707 TCGCTACGAGAACAAGACAAA 57.641 42.857 0.00 0.00 0.00 2.83
49 50 3.358707 TTCGCTACGAGAACAAGACAA 57.641 42.857 0.00 0.00 37.14 3.18
50 51 3.358707 TTTCGCTACGAGAACAAGACA 57.641 42.857 0.00 0.00 37.14 3.41
51 52 4.703899 TTTTTCGCTACGAGAACAAGAC 57.296 40.909 0.00 0.00 37.14 3.01
52 53 5.333798 CCAATTTTTCGCTACGAGAACAAGA 60.334 40.000 0.00 0.00 37.14 3.02
53 54 4.846137 CCAATTTTTCGCTACGAGAACAAG 59.154 41.667 0.00 0.00 37.14 3.16
54 55 4.273969 ACCAATTTTTCGCTACGAGAACAA 59.726 37.500 0.00 0.00 37.14 2.83
55 56 3.810941 ACCAATTTTTCGCTACGAGAACA 59.189 39.130 0.00 0.00 37.14 3.18
56 57 4.400036 ACCAATTTTTCGCTACGAGAAC 57.600 40.909 0.00 0.00 37.14 3.01
57 58 6.542574 TTTACCAATTTTTCGCTACGAGAA 57.457 33.333 0.00 0.00 37.14 2.87
58 59 6.730960 ATTTACCAATTTTTCGCTACGAGA 57.269 33.333 0.00 0.00 37.14 4.04
59 60 8.943925 CATAATTTACCAATTTTTCGCTACGAG 58.056 33.333 0.00 0.00 34.14 4.18
60 61 7.429920 GCATAATTTACCAATTTTTCGCTACGA 59.570 33.333 0.00 0.00 34.29 3.43
61 62 7.219154 TGCATAATTTACCAATTTTTCGCTACG 59.781 33.333 0.00 0.00 34.29 3.51
62 63 8.318167 GTGCATAATTTACCAATTTTTCGCTAC 58.682 33.333 0.00 0.00 34.29 3.58
63 64 8.247562 AGTGCATAATTTACCAATTTTTCGCTA 58.752 29.630 0.00 0.00 34.29 4.26
64 65 7.096551 AGTGCATAATTTACCAATTTTTCGCT 58.903 30.769 0.00 0.00 34.29 4.93
65 66 7.289587 AGTGCATAATTTACCAATTTTTCGC 57.710 32.000 0.00 0.00 34.29 4.70
66 67 7.543868 TGGAGTGCATAATTTACCAATTTTTCG 59.456 33.333 0.00 0.00 34.29 3.46
67 68 8.770438 TGGAGTGCATAATTTACCAATTTTTC 57.230 30.769 0.00 0.00 34.29 2.29
68 69 9.737844 ATTGGAGTGCATAATTTACCAATTTTT 57.262 25.926 0.00 0.00 41.74 1.94
82 83 9.571816 TGACATTTTGATATATTGGAGTGCATA 57.428 29.630 0.00 0.00 0.00 3.14
83 84 8.467963 TGACATTTTGATATATTGGAGTGCAT 57.532 30.769 0.00 0.00 0.00 3.96
84 85 7.878547 TGACATTTTGATATATTGGAGTGCA 57.121 32.000 0.00 0.00 0.00 4.57
85 86 7.747799 CGATGACATTTTGATATATTGGAGTGC 59.252 37.037 0.00 0.00 0.00 4.40
86 87 8.992073 TCGATGACATTTTGATATATTGGAGTG 58.008 33.333 0.00 0.00 0.00 3.51
87 88 9.559732 TTCGATGACATTTTGATATATTGGAGT 57.440 29.630 0.00 0.00 0.00 3.85
101 102 9.294030 GCTTCTTTATTTCATTCGATGACATTT 57.706 29.630 0.00 0.00 39.39 2.32
102 103 8.461222 TGCTTCTTTATTTCATTCGATGACATT 58.539 29.630 0.00 0.00 39.39 2.71
103 104 7.988737 TGCTTCTTTATTTCATTCGATGACAT 58.011 30.769 0.00 0.00 39.39 3.06
104 105 7.376435 TGCTTCTTTATTTCATTCGATGACA 57.624 32.000 0.00 0.00 39.39 3.58
105 106 8.673626 TTTGCTTCTTTATTTCATTCGATGAC 57.326 30.769 0.00 0.00 39.39 3.06
106 107 8.729756 TCTTTGCTTCTTTATTTCATTCGATGA 58.270 29.630 0.00 0.00 37.55 2.92
107 108 8.900511 TCTTTGCTTCTTTATTTCATTCGATG 57.099 30.769 0.00 0.00 0.00 3.84
108 109 9.912634 TTTCTTTGCTTCTTTATTTCATTCGAT 57.087 25.926 0.00 0.00 0.00 3.59
109 110 9.912634 ATTTCTTTGCTTCTTTATTTCATTCGA 57.087 25.926 0.00 0.00 0.00 3.71
110 111 9.947897 CATTTCTTTGCTTCTTTATTTCATTCG 57.052 29.630 0.00 0.00 0.00 3.34
113 114 9.768662 ACACATTTCTTTGCTTCTTTATTTCAT 57.231 25.926 0.00 0.00 0.00 2.57
114 115 9.598517 AACACATTTCTTTGCTTCTTTATTTCA 57.401 25.926 0.00 0.00 0.00 2.69
117 118 9.598517 TGAAACACATTTCTTTGCTTCTTTATT 57.401 25.926 1.82 0.00 44.02 1.40
118 119 9.252962 CTGAAACACATTTCTTTGCTTCTTTAT 57.747 29.630 1.82 0.00 44.02 1.40
119 120 8.250332 ACTGAAACACATTTCTTTGCTTCTTTA 58.750 29.630 1.82 0.00 44.02 1.85
120 121 7.063780 CACTGAAACACATTTCTTTGCTTCTTT 59.936 33.333 1.82 0.00 44.02 2.52
121 122 6.532657 CACTGAAACACATTTCTTTGCTTCTT 59.467 34.615 1.82 0.00 44.02 2.52
122 123 6.038356 CACTGAAACACATTTCTTTGCTTCT 58.962 36.000 1.82 0.00 44.02 2.85
123 124 5.232838 CCACTGAAACACATTTCTTTGCTTC 59.767 40.000 1.82 0.00 44.02 3.86
124 125 5.111293 CCACTGAAACACATTTCTTTGCTT 58.889 37.500 1.82 0.00 44.02 3.91
125 126 4.685924 CCACTGAAACACATTTCTTTGCT 58.314 39.130 1.82 0.00 44.02 3.91
126 127 3.245990 GCCACTGAAACACATTTCTTTGC 59.754 43.478 1.82 0.00 44.02 3.68
127 128 3.803778 GGCCACTGAAACACATTTCTTTG 59.196 43.478 0.00 0.00 44.02 2.77
128 129 3.490761 CGGCCACTGAAACACATTTCTTT 60.491 43.478 2.24 0.00 44.02 2.52
129 130 2.034558 CGGCCACTGAAACACATTTCTT 59.965 45.455 2.24 0.00 44.02 2.52
130 131 1.608590 CGGCCACTGAAACACATTTCT 59.391 47.619 2.24 0.00 44.02 2.52
131 132 1.606668 TCGGCCACTGAAACACATTTC 59.393 47.619 2.24 0.00 43.96 2.17
132 133 1.686355 TCGGCCACTGAAACACATTT 58.314 45.000 2.24 0.00 0.00 2.32
133 134 1.686355 TTCGGCCACTGAAACACATT 58.314 45.000 2.24 0.00 0.00 2.71
134 135 1.608590 CTTTCGGCCACTGAAACACAT 59.391 47.619 2.24 0.00 32.29 3.21
135 136 1.021202 CTTTCGGCCACTGAAACACA 58.979 50.000 2.24 0.00 32.29 3.72
136 137 1.021968 ACTTTCGGCCACTGAAACAC 58.978 50.000 2.24 0.00 32.29 3.32
137 138 1.021202 CACTTTCGGCCACTGAAACA 58.979 50.000 2.24 0.00 32.29 2.83
138 139 1.305201 TCACTTTCGGCCACTGAAAC 58.695 50.000 2.24 0.00 32.29 2.78
139 140 2.045561 TTCACTTTCGGCCACTGAAA 57.954 45.000 2.24 3.66 34.39 2.69
140 141 2.045561 TTTCACTTTCGGCCACTGAA 57.954 45.000 2.24 0.00 0.00 3.02
141 142 2.151202 GATTTCACTTTCGGCCACTGA 58.849 47.619 2.24 0.00 0.00 3.41
142 143 1.200020 GGATTTCACTTTCGGCCACTG 59.800 52.381 2.24 0.00 0.00 3.66
143 144 1.202879 TGGATTTCACTTTCGGCCACT 60.203 47.619 2.24 0.00 0.00 4.00
144 145 1.243902 TGGATTTCACTTTCGGCCAC 58.756 50.000 2.24 0.00 0.00 5.01
145 146 1.988293 TTGGATTTCACTTTCGGCCA 58.012 45.000 2.24 0.00 0.00 5.36
146 147 3.056891 TCATTTGGATTTCACTTTCGGCC 60.057 43.478 0.00 0.00 0.00 6.13
147 148 4.173036 TCATTTGGATTTCACTTTCGGC 57.827 40.909 0.00 0.00 0.00 5.54
148 149 7.475771 TTTTTCATTTGGATTTCACTTTCGG 57.524 32.000 0.00 0.00 0.00 4.30
184 185 9.857656 CTGGACCTAACCGATACCTTATATATA 57.142 37.037 0.00 0.00 0.00 0.86
185 186 8.342270 ACTGGACCTAACCGATACCTTATATAT 58.658 37.037 0.00 0.00 0.00 0.86
186 187 7.613022 CACTGGACCTAACCGATACCTTATATA 59.387 40.741 0.00 0.00 0.00 0.86
187 188 6.436532 CACTGGACCTAACCGATACCTTATAT 59.563 42.308 0.00 0.00 0.00 0.86
188 189 5.771666 CACTGGACCTAACCGATACCTTATA 59.228 44.000 0.00 0.00 0.00 0.98
189 190 4.587684 CACTGGACCTAACCGATACCTTAT 59.412 45.833 0.00 0.00 0.00 1.73
190 191 3.956199 CACTGGACCTAACCGATACCTTA 59.044 47.826 0.00 0.00 0.00 2.69
191 192 2.764572 CACTGGACCTAACCGATACCTT 59.235 50.000 0.00 0.00 0.00 3.50
192 193 2.024655 TCACTGGACCTAACCGATACCT 60.025 50.000 0.00 0.00 0.00 3.08
193 194 2.381911 TCACTGGACCTAACCGATACC 58.618 52.381 0.00 0.00 0.00 2.73
194 195 4.460948 TTTCACTGGACCTAACCGATAC 57.539 45.455 0.00 0.00 0.00 2.24
195 196 4.529377 AGTTTTCACTGGACCTAACCGATA 59.471 41.667 0.00 0.00 0.00 2.92
196 197 3.326880 AGTTTTCACTGGACCTAACCGAT 59.673 43.478 0.00 0.00 0.00 4.18
197 198 2.701951 AGTTTTCACTGGACCTAACCGA 59.298 45.455 0.00 0.00 0.00 4.69
198 199 3.121738 AGTTTTCACTGGACCTAACCG 57.878 47.619 0.00 0.00 0.00 4.44
199 200 5.469084 CACTAAGTTTTCACTGGACCTAACC 59.531 44.000 0.00 0.00 31.60 2.85
200 201 6.285990 TCACTAAGTTTTCACTGGACCTAAC 58.714 40.000 0.00 0.00 31.60 2.34
201 202 6.488769 TCACTAAGTTTTCACTGGACCTAA 57.511 37.500 0.00 0.00 31.60 2.69
202 203 6.099269 ACTTCACTAAGTTTTCACTGGACCTA 59.901 38.462 0.00 0.00 43.60 3.08
203 204 5.104485 ACTTCACTAAGTTTTCACTGGACCT 60.104 40.000 0.00 0.00 43.60 3.85
204 205 5.123936 ACTTCACTAAGTTTTCACTGGACC 58.876 41.667 0.00 0.00 43.60 4.46
205 206 7.781548 TTACTTCACTAAGTTTTCACTGGAC 57.218 36.000 0.00 0.00 43.60 4.02
206 207 8.795842 TTTTACTTCACTAAGTTTTCACTGGA 57.204 30.769 0.00 0.00 43.60 3.86
251 252 5.641209 GCAATACTTAGGGCACATCTAGATG 59.359 44.000 27.63 27.63 44.15 2.90
252 253 5.307976 TGCAATACTTAGGGCACATCTAGAT 59.692 40.000 0.00 0.00 0.00 1.98
253 254 4.653801 TGCAATACTTAGGGCACATCTAGA 59.346 41.667 0.00 0.00 0.00 2.43
254 255 4.960938 TGCAATACTTAGGGCACATCTAG 58.039 43.478 0.00 0.00 0.00 2.43
256 257 3.931907 TGCAATACTTAGGGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
261 262 3.931907 AGATGTGCAATACTTAGGGCA 57.068 42.857 0.00 0.00 0.00 5.36
262 263 5.368989 ACTTAGATGTGCAATACTTAGGGC 58.631 41.667 0.00 0.00 0.00 5.19
263 264 5.992217 GGACTTAGATGTGCAATACTTAGGG 59.008 44.000 0.00 0.00 0.00 3.53
264 265 6.821388 AGGACTTAGATGTGCAATACTTAGG 58.179 40.000 0.00 0.00 0.00 2.69
265 266 9.416794 CATAGGACTTAGATGTGCAATACTTAG 57.583 37.037 0.00 0.00 0.00 2.18
266 267 8.924303 ACATAGGACTTAGATGTGCAATACTTA 58.076 33.333 0.00 0.00 32.62 2.24
267 268 7.796054 ACATAGGACTTAGATGTGCAATACTT 58.204 34.615 0.00 0.00 32.62 2.24
268 269 7.069950 TGACATAGGACTTAGATGTGCAATACT 59.930 37.037 0.00 0.00 33.99 2.12
269 270 7.210174 TGACATAGGACTTAGATGTGCAATAC 58.790 38.462 0.00 0.00 33.99 1.89
270 271 7.360113 TGACATAGGACTTAGATGTGCAATA 57.640 36.000 0.00 0.00 33.99 1.90
271 272 6.239217 TGACATAGGACTTAGATGTGCAAT 57.761 37.500 0.00 0.00 33.99 3.56
272 273 5.675684 TGACATAGGACTTAGATGTGCAA 57.324 39.130 0.00 0.00 33.99 4.08
273 274 5.876651 ATGACATAGGACTTAGATGTGCA 57.123 39.130 0.00 0.00 33.99 4.57
274 275 8.839310 ATTAATGACATAGGACTTAGATGTGC 57.161 34.615 0.00 0.00 33.99 4.57
295 296 9.781834 CCTGCACGAATTTCTATGTAAAATTAA 57.218 29.630 0.00 0.00 36.66 1.40
296 297 7.913297 GCCTGCACGAATTTCTATGTAAAATTA 59.087 33.333 0.00 0.00 36.66 1.40
297 298 6.751888 GCCTGCACGAATTTCTATGTAAAATT 59.248 34.615 0.00 0.00 38.64 1.82
298 299 6.127758 TGCCTGCACGAATTTCTATGTAAAAT 60.128 34.615 0.00 0.00 0.00 1.82
299 300 5.182190 TGCCTGCACGAATTTCTATGTAAAA 59.818 36.000 0.00 0.00 0.00 1.52
300 301 4.697828 TGCCTGCACGAATTTCTATGTAAA 59.302 37.500 0.00 0.00 0.00 2.01
301 302 4.257731 TGCCTGCACGAATTTCTATGTAA 58.742 39.130 0.00 0.00 0.00 2.41
302 303 3.867857 TGCCTGCACGAATTTCTATGTA 58.132 40.909 0.00 0.00 0.00 2.29
303 304 2.710377 TGCCTGCACGAATTTCTATGT 58.290 42.857 0.00 0.00 0.00 2.29
304 305 3.976793 ATGCCTGCACGAATTTCTATG 57.023 42.857 0.00 0.00 0.00 2.23
305 306 4.989279 AAATGCCTGCACGAATTTCTAT 57.011 36.364 0.00 0.00 0.00 1.98
306 307 4.782019 AAAATGCCTGCACGAATTTCTA 57.218 36.364 2.53 0.00 0.00 2.10
307 308 3.665745 AAAATGCCTGCACGAATTTCT 57.334 38.095 2.53 0.00 0.00 2.52
327 328 6.939730 AGAAAGAAAAAGACCAAAGGCAAAAA 59.060 30.769 0.00 0.00 0.00 1.94
328 329 6.472016 AGAAAGAAAAAGACCAAAGGCAAAA 58.528 32.000 0.00 0.00 0.00 2.44
329 330 6.048732 AGAAAGAAAAAGACCAAAGGCAAA 57.951 33.333 0.00 0.00 0.00 3.68
330 331 5.675684 AGAAAGAAAAAGACCAAAGGCAA 57.324 34.783 0.00 0.00 0.00 4.52
331 332 5.891551 ACTAGAAAGAAAAAGACCAAAGGCA 59.108 36.000 0.00 0.00 0.00 4.75
332 333 6.392625 ACTAGAAAGAAAAAGACCAAAGGC 57.607 37.500 0.00 0.00 0.00 4.35
333 334 8.466798 TCAAACTAGAAAGAAAAAGACCAAAGG 58.533 33.333 0.00 0.00 0.00 3.11
336 337 9.801873 CAATCAAACTAGAAAGAAAAAGACCAA 57.198 29.630 0.00 0.00 0.00 3.67
337 338 9.184523 TCAATCAAACTAGAAAGAAAAAGACCA 57.815 29.630 0.00 0.00 0.00 4.02
338 339 9.670719 CTCAATCAAACTAGAAAGAAAAAGACC 57.329 33.333 0.00 0.00 0.00 3.85
343 344 9.396022 AGTGACTCAATCAAACTAGAAAGAAAA 57.604 29.630 0.00 0.00 39.72 2.29
344 345 8.964476 AGTGACTCAATCAAACTAGAAAGAAA 57.036 30.769 0.00 0.00 39.72 2.52
345 346 8.964476 AAGTGACTCAATCAAACTAGAAAGAA 57.036 30.769 0.00 0.00 39.72 2.52
346 347 9.698309 CTAAGTGACTCAATCAAACTAGAAAGA 57.302 33.333 0.00 0.00 39.72 2.52
347 348 9.698309 TCTAAGTGACTCAATCAAACTAGAAAG 57.302 33.333 0.00 0.00 39.72 2.62
349 350 9.645059 CATCTAAGTGACTCAATCAAACTAGAA 57.355 33.333 0.00 0.00 39.72 2.10
350 351 8.807118 ACATCTAAGTGACTCAATCAAACTAGA 58.193 33.333 0.00 0.00 39.72 2.43
351 352 8.867935 CACATCTAAGTGACTCAATCAAACTAG 58.132 37.037 0.00 0.00 42.05 2.57
352 353 7.331934 GCACATCTAAGTGACTCAATCAAACTA 59.668 37.037 0.00 0.00 42.05 2.24
353 354 6.148480 GCACATCTAAGTGACTCAATCAAACT 59.852 38.462 0.00 0.00 42.05 2.66
354 355 6.073058 TGCACATCTAAGTGACTCAATCAAAC 60.073 38.462 0.00 0.00 42.05 2.93
355 356 5.997129 TGCACATCTAAGTGACTCAATCAAA 59.003 36.000 0.00 0.00 42.05 2.69
356 357 5.550290 TGCACATCTAAGTGACTCAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
357 358 5.151297 TGCACATCTAAGTGACTCAATCA 57.849 39.130 0.00 0.00 42.05 2.57
358 359 6.674694 ATTGCACATCTAAGTGACTCAATC 57.325 37.500 0.00 0.00 42.05 2.67
359 360 8.565896 TTTATTGCACATCTAAGTGACTCAAT 57.434 30.769 0.00 0.00 42.05 2.57
360 361 7.977789 TTTATTGCACATCTAAGTGACTCAA 57.022 32.000 0.00 0.00 42.05 3.02
361 362 9.317936 CTATTTATTGCACATCTAAGTGACTCA 57.682 33.333 0.00 0.00 42.05 3.41
362 363 9.534565 TCTATTTATTGCACATCTAAGTGACTC 57.465 33.333 0.00 0.00 42.05 3.36
365 366 9.836864 ACATCTATTTATTGCACATCTAAGTGA 57.163 29.630 0.00 0.00 42.05 3.41
366 367 9.874215 CACATCTATTTATTGCACATCTAAGTG 57.126 33.333 0.00 0.00 42.37 3.16
367 368 8.562892 GCACATCTATTTATTGCACATCTAAGT 58.437 33.333 0.00 0.00 33.24 2.24
368 369 8.019669 GGCACATCTATTTATTGCACATCTAAG 58.980 37.037 0.00 0.00 34.76 2.18
369 370 7.040478 GGGCACATCTATTTATTGCACATCTAA 60.040 37.037 0.00 0.00 36.57 2.10
370 371 6.430925 GGGCACATCTATTTATTGCACATCTA 59.569 38.462 0.00 0.00 36.57 1.98
371 372 5.242393 GGGCACATCTATTTATTGCACATCT 59.758 40.000 0.00 0.00 36.57 2.90
372 373 5.242393 AGGGCACATCTATTTATTGCACATC 59.758 40.000 0.00 0.00 39.16 3.06
373 374 5.142639 AGGGCACATCTATTTATTGCACAT 58.857 37.500 0.00 0.00 39.16 3.21
374 375 4.535781 AGGGCACATCTATTTATTGCACA 58.464 39.130 0.00 0.00 39.16 4.57
375 376 5.997746 TCTAGGGCACATCTATTTATTGCAC 59.002 40.000 0.00 0.00 36.83 4.57
376 377 5.997746 GTCTAGGGCACATCTATTTATTGCA 59.002 40.000 0.00 0.00 34.76 4.08
377 378 5.997746 TGTCTAGGGCACATCTATTTATTGC 59.002 40.000 0.00 0.00 0.00 3.56
378 379 8.345565 GTTTGTCTAGGGCACATCTATTTATTG 58.654 37.037 0.00 0.00 0.00 1.90
379 380 7.502561 GGTTTGTCTAGGGCACATCTATTTATT 59.497 37.037 0.00 0.00 0.00 1.40
380 381 6.998673 GGTTTGTCTAGGGCACATCTATTTAT 59.001 38.462 0.00 0.00 0.00 1.40
381 382 6.354130 GGTTTGTCTAGGGCACATCTATTTA 58.646 40.000 0.00 0.00 0.00 1.40
382 383 5.193679 GGTTTGTCTAGGGCACATCTATTT 58.806 41.667 0.00 0.00 0.00 1.40
383 384 4.683400 CGGTTTGTCTAGGGCACATCTATT 60.683 45.833 0.00 0.00 0.00 1.73
384 385 3.181465 CGGTTTGTCTAGGGCACATCTAT 60.181 47.826 0.00 0.00 0.00 1.98
385 386 2.167693 CGGTTTGTCTAGGGCACATCTA 59.832 50.000 0.00 0.00 0.00 1.98
386 387 1.066143 CGGTTTGTCTAGGGCACATCT 60.066 52.381 0.00 0.00 0.00 2.90
387 388 1.369625 CGGTTTGTCTAGGGCACATC 58.630 55.000 0.00 0.00 0.00 3.06
388 389 0.035439 CCGGTTTGTCTAGGGCACAT 60.035 55.000 0.00 0.00 0.00 3.21
389 390 1.373435 CCGGTTTGTCTAGGGCACA 59.627 57.895 0.00 0.00 0.00 4.57
390 391 0.609662 TACCGGTTTGTCTAGGGCAC 59.390 55.000 15.04 0.00 0.00 5.01
391 392 1.350071 TTACCGGTTTGTCTAGGGCA 58.650 50.000 15.04 0.00 0.00 5.36
392 393 2.477845 TTTACCGGTTTGTCTAGGGC 57.522 50.000 15.04 0.00 0.00 5.19
393 394 6.175471 AGTATTTTTACCGGTTTGTCTAGGG 58.825 40.000 15.04 0.00 0.00 3.53
394 395 6.314648 GGAGTATTTTTACCGGTTTGTCTAGG 59.685 42.308 15.04 0.00 0.00 3.02
395 396 6.875195 TGGAGTATTTTTACCGGTTTGTCTAG 59.125 38.462 15.04 0.00 0.00 2.43
396 397 6.650390 GTGGAGTATTTTTACCGGTTTGTCTA 59.350 38.462 15.04 0.00 0.00 2.59
397 398 5.471116 GTGGAGTATTTTTACCGGTTTGTCT 59.529 40.000 15.04 2.53 0.00 3.41
398 399 5.471116 AGTGGAGTATTTTTACCGGTTTGTC 59.529 40.000 15.04 0.00 0.00 3.18
399 400 5.379187 AGTGGAGTATTTTTACCGGTTTGT 58.621 37.500 15.04 0.00 0.00 2.83
400 401 5.952526 AGTGGAGTATTTTTACCGGTTTG 57.047 39.130 15.04 0.00 0.00 2.93
401 402 6.532826 TGTAGTGGAGTATTTTTACCGGTTT 58.467 36.000 15.04 0.00 0.00 3.27
402 403 6.112927 TGTAGTGGAGTATTTTTACCGGTT 57.887 37.500 15.04 0.00 0.00 4.44
403 404 5.337813 CCTGTAGTGGAGTATTTTTACCGGT 60.338 44.000 13.98 13.98 0.00 5.28
404 405 5.114081 CCTGTAGTGGAGTATTTTTACCGG 58.886 45.833 0.00 0.00 0.00 5.28
405 406 5.727434 ACCTGTAGTGGAGTATTTTTACCG 58.273 41.667 0.00 0.00 0.00 4.02
406 407 7.991084 AAACCTGTAGTGGAGTATTTTTACC 57.009 36.000 0.00 0.00 0.00 2.85
420 421 2.880443 TCGGTGGAGTAAACCTGTAGT 58.120 47.619 0.00 0.00 35.39 2.73
421 422 3.947910 TTCGGTGGAGTAAACCTGTAG 57.052 47.619 0.00 0.00 35.39 2.74
424 425 4.430908 GAGTATTCGGTGGAGTAAACCTG 58.569 47.826 0.00 0.00 35.39 4.00
425 426 3.450096 GGAGTATTCGGTGGAGTAAACCT 59.550 47.826 0.00 0.00 35.39 3.50
440 441 7.091443 CGATCCTCTAAAAATAGCGGAGTATT 58.909 38.462 1.62 0.00 34.78 1.89
464 465 2.092592 ACCCCTTAGGCATTTCTAACCG 60.093 50.000 0.00 0.00 40.58 4.44
484 486 2.304761 TGGAGGTGGTTTCTGGATACAC 59.695 50.000 0.00 0.00 46.17 2.90
534 536 3.016736 CGCATCAAATGGAAACCTAGGT 58.983 45.455 9.21 9.21 0.00 3.08
594 596 4.069304 TGGTAGATTTGAGGGAACAAACG 58.931 43.478 0.00 0.00 41.49 3.60
623 649 5.591877 ACAGGACCTCATCATTAATCAAAGC 59.408 40.000 0.00 0.00 0.00 3.51
629 655 4.445448 GCTGGACAGGACCTCATCATTAAT 60.445 45.833 0.00 0.00 0.00 1.40
901 1021 0.465705 ACGTGTCAGCCTCCATATGG 59.534 55.000 16.25 16.25 0.00 2.74
902 1022 2.623416 TCTACGTGTCAGCCTCCATATG 59.377 50.000 0.00 0.00 0.00 1.78
937 1287 0.900421 CCATCAGTCTGGCTCTGTGA 59.100 55.000 0.00 0.00 34.86 3.58
1015 1366 4.617253 TGAACAAGTTAGGCAGAGCTAA 57.383 40.909 0.00 0.00 0.00 3.09
1016 1367 4.826274 ATGAACAAGTTAGGCAGAGCTA 57.174 40.909 0.00 0.00 0.00 3.32
1017 1368 3.710209 ATGAACAAGTTAGGCAGAGCT 57.290 42.857 0.00 0.00 0.00 4.09
1018 1369 3.753272 TCAATGAACAAGTTAGGCAGAGC 59.247 43.478 0.00 0.00 0.00 4.09
1121 1492 1.827969 CCCTTGTTGACGAGAGGAGAT 59.172 52.381 0.00 0.00 0.00 2.75
1216 1605 1.852157 AGGGTGGCATCAAGGACCA 60.852 57.895 0.00 0.00 0.00 4.02
1240 1629 2.513204 CATCCTGCTGCTCGGTGG 60.513 66.667 0.00 0.00 0.00 4.61
1456 1866 1.880894 CCGTACTCGAAGCTGTGGA 59.119 57.895 0.00 0.00 39.71 4.02
1478 1888 1.964373 CACAGTGGGGTTGCCGTAC 60.964 63.158 0.00 0.00 0.00 3.67
1743 2153 3.308053 GGAAATTAACTTACGTCGCCCTC 59.692 47.826 0.00 0.00 0.00 4.30
1851 2266 3.444034 TCGGACATTCAGTGTAGAAGAGG 59.556 47.826 0.00 0.00 42.36 3.69
1866 2281 2.605295 TGGGGGTTCGTCGGACAT 60.605 61.111 5.91 0.00 0.00 3.06
2514 2950 2.045045 CGATGTGGTGCCATGGGT 60.045 61.111 15.13 0.00 0.00 4.51
2587 3023 2.433145 CTCATGACGCCGTGCAGT 60.433 61.111 0.00 0.00 0.00 4.40
2816 3259 0.332632 CCCATTCTTGGCCTTCTCCA 59.667 55.000 3.32 0.00 42.15 3.86
2988 3442 6.017109 GCACAATTTGACTACCTACCATATGG 60.017 42.308 20.68 20.68 42.17 2.74
3038 3495 9.184523 TCCTTCAAGAAACAAAAGAATACAGAA 57.815 29.630 0.00 0.00 0.00 3.02
3040 3497 9.455847 CTTCCTTCAAGAAACAAAAGAATACAG 57.544 33.333 0.00 0.00 33.29 2.74
3052 3509 5.240403 ACTTGATGCTCTTCCTTCAAGAAAC 59.760 40.000 18.59 0.00 43.87 2.78
3075 3532 9.162793 CGAAGCACATATTTCTTATCATCAAAC 57.837 33.333 0.00 0.00 0.00 2.93
3265 5014 1.346479 TTGTTTCCCCACTCCGACCA 61.346 55.000 0.00 0.00 0.00 4.02
3274 5287 3.593442 AACATGTCTCTTGTTTCCCCA 57.407 42.857 0.00 0.00 33.64 4.96
3280 5293 9.314321 CGAACCTATATAAACATGTCTCTTGTT 57.686 33.333 0.00 0.00 38.91 2.83
3282 5295 7.385205 CCCGAACCTATATAAACATGTCTCTTG 59.615 40.741 0.00 0.00 0.00 3.02
3283 5296 7.442656 CCCGAACCTATATAAACATGTCTCTT 58.557 38.462 0.00 0.00 0.00 2.85
3284 5297 6.518537 GCCCGAACCTATATAAACATGTCTCT 60.519 42.308 0.00 0.00 0.00 3.10
3488 5502 0.401738 TCCAAGACAAGGAAGCCAGG 59.598 55.000 0.00 0.00 30.71 4.45
3601 5616 9.802039 ACAACACCTTATAATTTCTAGTCCAAA 57.198 29.630 0.00 0.00 0.00 3.28
3624 5639 3.969312 GGTGTTATAGCCTAGGGGTACAA 59.031 47.826 11.72 0.00 38.55 2.41
3625 5640 3.051957 TGGTGTTATAGCCTAGGGGTACA 60.052 47.826 11.72 0.00 38.55 2.90
3695 5710 6.127814 CGAGAAGGTAGTGTTGTAGATTGGTA 60.128 42.308 0.00 0.00 0.00 3.25
3699 5714 4.463186 AGCGAGAAGGTAGTGTTGTAGATT 59.537 41.667 0.00 0.00 0.00 2.40
3730 5745 5.507315 GGAGCTTCGAAGAACCAATTTGAAA 60.507 40.000 28.95 0.00 45.90 2.69
3849 5873 8.673711 GTCAGTTGTGCCTAAATATCAATGTTA 58.326 33.333 0.00 0.00 0.00 2.41
3987 6018 3.156293 CCTCCACATGTCATTTTGACCA 58.844 45.455 0.00 0.00 46.40 4.02
4022 6053 2.796193 CCGCCGTGAGATGGGATGA 61.796 63.158 0.00 0.00 0.00 2.92
4112 6143 4.030913 TCGTAGGAAATCCCTTCACATCT 58.969 43.478 0.00 0.00 44.85 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.