AutoCloner

Multiple sequence alignment - TraesCS2B01G070000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G070000	chr2B	100.000	3198	0	0	1	3198	37123105	37126302	0.000000e+00	5906
1	TraesCS2B01G070000	chr2B	92.330	1695	102	18	509	2198	37357456	37359127	0.000000e+00	2385
2	TraesCS2B01G070000	chr2B	90.612	1651	111	20	565	2198	37014451	37016074	0.000000e+00	2150
3	TraesCS2B01G070000	chr2B	87.459	1834	148	39	407	2198	37249363	37251156	0.000000e+00	2037
4	TraesCS2B01G070000	chr2B	87.405	1834	149	39	407	2198	37232205	37233998	0.000000e+00	2032
5	TraesCS2B01G070000	chr2B	94.044	1041	60	2	1159	2198	37215750	37216789	0.000000e+00	1578
6	TraesCS2B01G070000	chr2B	89.017	173	19	0	407	579	37014262	37014434	6.950000e-52	215
7	TraesCS2B01G070000	chr2A	88.053	1808	139	30	407	2198	25639694	25641440	0.000000e+00	2071
8	TraesCS2B01G070000	chr2A	87.998	1808	140	30	407	2198	24572509	24570763	0.000000e+00	2065
9	TraesCS2B01G070000	chr2A	88.004	1809	138	35	407	2198	24601899	24600153	0.000000e+00	2065
10	TraesCS2B01G070000	chr2A	87.240	1536	140	28	446	1969	24545493	24544002	0.000000e+00	1700
11	TraesCS2B01G070000	chr2A	83.757	511	67	10	890	1392	24536488	24535986	1.340000e-128	470
12	TraesCS2B01G070000	chr2A	86.705	346	40	3	4	344	24545893	24545549	2.330000e-101	379
13	TraesCS2B01G070000	chrUn	87.998	1808	140	30	407	2198	366633264	366635010	0.000000e+00	2065
14	TraesCS2B01G070000	chrUn	93.632	1005	48	11	2198	3198	70453991	70454983	0.000000e+00	1487
15	TraesCS2B01G070000	chrUn	83.673	784	72	25	407	1174	342306425	342305682	0.000000e+00	688
16	TraesCS2B01G070000	chr1A	87.998	1808	140	30	407	2198	534356459	534358205	0.000000e+00	2065
17	TraesCS2B01G070000	chr2D	86.696	1571	151	32	407	1969	23054675	23053155	0.000000e+00	1690
18	TraesCS2B01G070000	chr2D	88.049	410	42	4	4	406	23055130	23054721	2.230000e-131	479
19	TraesCS2B01G070000	chr1B	94.030	1005	47	9	2198	3198	531669502	531670497	0.000000e+00	1511
20	TraesCS2B01G070000	chr7B	93.523	1019	50	12	2185	3198	429266609	429265602	0.000000e+00	1502
21	TraesCS2B01G070000	chr7B	93.756	1009	47	12	2196	3198	704641986	704642984	0.000000e+00	1500
22	TraesCS2B01G070000	chr7B	93.725	1004	45	12	2197	3198	80373979	80374966	0.000000e+00	1489
23	TraesCS2B01G070000	chr7B	93.738	1006	42	11	2197	3198	154540102	154539114	0.000000e+00	1489
24	TraesCS2B01G070000	chr7B	93.625	1004	48	13	2198	3198	45353004	45353994	0.000000e+00	1485
25	TraesCS2B01G070000	chr5B	94.917	964	41	7	2238	3198	687355517	687356475	0.000000e+00	1502
26	TraesCS2B01G070000	chr4A	93.035	1005	56	10	2196	3198	712022670	712023662	0.000000e+00	1456

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G070000	chr2B	37123105	37126302	3197	False	5906.0	5906	100.0000	1	3198	1	chr2B.!!$F1	3197
1	TraesCS2B01G070000	chr2B	37357456	37359127	1671	False	2385.0	2385	92.3300	509	2198	1	chr2B.!!$F5	1689
2	TraesCS2B01G070000	chr2B	37249363	37251156	1793	False	2037.0	2037	87.4590	407	2198	1	chr2B.!!$F4	1791
3	TraesCS2B01G070000	chr2B	37232205	37233998	1793	False	2032.0	2032	87.4050	407	2198	1	chr2B.!!$F3	1791
4	TraesCS2B01G070000	chr2B	37215750	37216789	1039	False	1578.0	1578	94.0440	1159	2198	1	chr2B.!!$F2	1039
5	TraesCS2B01G070000	chr2B	37014262	37016074	1812	False	1182.5	2150	89.8145	407	2198	2	chr2B.!!$F6	1791
6	TraesCS2B01G070000	chr2A	25639694	25641440	1746	False	2071.0	2071	88.0530	407	2198	1	chr2A.!!$F1	1791
7	TraesCS2B01G070000	chr2A	24570763	24572509	1746	True	2065.0	2065	87.9980	407	2198	1	chr2A.!!$R2	1791
8	TraesCS2B01G070000	chr2A	24600153	24601899	1746	True	2065.0	2065	88.0040	407	2198	1	chr2A.!!$R3	1791
9	TraesCS2B01G070000	chr2A	24544002	24545893	1891	True	1039.5	1700	86.9725	4	1969	2	chr2A.!!$R4	1965
10	TraesCS2B01G070000	chr2A	24535986	24536488	502	True	470.0	470	83.7570	890	1392	1	chr2A.!!$R1	502
11	TraesCS2B01G070000	chrUn	366633264	366635010	1746	False	2065.0	2065	87.9980	407	2198	1	chrUn.!!$F2	1791
12	TraesCS2B01G070000	chrUn	70453991	70454983	992	False	1487.0	1487	93.6320	2198	3198	1	chrUn.!!$F1	1000
13	TraesCS2B01G070000	chrUn	342305682	342306425	743	True	688.0	688	83.6730	407	1174	1	chrUn.!!$R1	767
14	TraesCS2B01G070000	chr1A	534356459	534358205	1746	False	2065.0	2065	87.9980	407	2198	1	chr1A.!!$F1	1791
15	TraesCS2B01G070000	chr2D	23053155	23055130	1975	True	1084.5	1690	87.3725	4	1969	2	chr2D.!!$R1	1965
16	TraesCS2B01G070000	chr1B	531669502	531670497	995	False	1511.0	1511	94.0300	2198	3198	1	chr1B.!!$F1	1000
17	TraesCS2B01G070000	chr7B	429265602	429266609	1007	True	1502.0	1502	93.5230	2185	3198	1	chr7B.!!$R2	1013
18	TraesCS2B01G070000	chr7B	704641986	704642984	998	False	1500.0	1500	93.7560	2196	3198	1	chr7B.!!$F3	1002
19	TraesCS2B01G070000	chr7B	80373979	80374966	987	False	1489.0	1489	93.7250	2197	3198	1	chr7B.!!$F2	1001
20	TraesCS2B01G070000	chr7B	154539114	154540102	988	True	1489.0	1489	93.7380	2197	3198	1	chr7B.!!$R1	1001
21	TraesCS2B01G070000	chr7B	45353004	45353994	990	False	1485.0	1485	93.6250	2198	3198	1	chr7B.!!$F1	1000
22	TraesCS2B01G070000	chr5B	687355517	687356475	958	False	1502.0	1502	94.9170	2238	3198	1	chr5B.!!$F1	960
23	TraesCS2B01G070000	chr4A	712022670	712023662	992	False	1456.0	1456	93.0350	2196	3198	1	chr4A.!!$F1	1002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
852	995	0.10576	AGAGCCGGACTGATGGATCT	60.106	55.0	5.05	0.0	45.73	2.75	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2683	2856	1.126488	GAGGATGATGTGGCCTCTCA	58.874	55.0	3.32	6.85	43.79	3.27	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	3.438216	TTCATGAAGAGCCATGGTTGA	57.562	42.857	14.67	0.00	43.01	3.18
122	128	8.462016	AGTTCAAAGGTCATTAATGAACATAGC	58.538	33.333	30.20	16.09	46.79	2.97
129	135	8.806146	AGGTCATTAATGAACATAGCAAAGTTT	58.194	29.630	30.20	6.91	46.79	2.66
131	137	9.846248	GTCATTAATGAACATAGCAAAGTTTCT	57.154	29.630	19.55	0.00	38.75	2.52
139	145	6.942532	ACATAGCAAAGTTTCTCTGTTTCA	57.057	33.333	0.00	0.00	0.00	2.69
143	149	5.825507	AGCAAAGTTTCTCTGTTTCATGTC	58.174	37.500	0.00	0.00	0.00	3.06
155	161	7.602265	TCTCTGTTTCATGTCGATTTGTCATTA	59.398	33.333	0.00	0.00	0.00	1.90
162	168	7.696755	TCATGTCGATTTGTCATTATTTCCTG	58.303	34.615	0.00	0.00	0.00	3.86
182	188	7.776618	TCCTGATAAGACTTTGTCAAGACTA	57.223	36.000	0.00	0.00	34.40	2.59
206	212	2.806244	CGTGGTTTCTCTCGTGGAAATT	59.194	45.455	5.03	0.00	35.55	1.82
210	216	3.120649	GGTTTCTCTCGTGGAAATTGACG	60.121	47.826	0.00	0.00	35.55	4.35
212	218	1.890489	TCTCTCGTGGAAATTGACGGA	59.110	47.619	0.00	0.00	36.23	4.69
231	238	4.879014	GGAACGCCTTTTAATTTGTTCG	57.121	40.909	0.00	0.00	37.24	3.95
233	240	4.615541	GGAACGCCTTTTAATTTGTTCGAG	59.384	41.667	0.00	0.00	37.24	4.04
284	291	5.048504	ACCTTGCACAAATATCAGTTGAGTG	60.049	40.000	0.00	0.00	0.00	3.51
286	293	5.611796	TGCACAAATATCAGTTGAGTGTC	57.388	39.130	0.00	0.00	0.00	3.67
294	301	2.497138	TCAGTTGAGTGTCAATGCCTG	58.503	47.619	0.00	0.00	38.79	4.85
349	356	6.455646	GCATAAAACGGACAGAGATTACAGTG	60.456	42.308	0.00	0.00	0.00	3.66
396	404	8.168058	ACTTTGGTTAGATATTGGGTACAAACT	58.832	33.333	0.00	0.00	40.55	2.66
398	406	7.023171	TGGTTAGATATTGGGTACAAACTGT	57.977	36.000	0.00	0.00	40.55	3.55
418	477	4.261801	TGTGTAAAGGCTAGCTTTCCATC	58.738	43.478	13.02	5.40	0.00	3.51
427	486	0.107312	AGCTTTCCATCTGATGCGCT	60.107	50.000	9.73	12.55	0.00	5.92
429	488	1.376543	CTTTCCATCTGATGCGCTGT	58.623	50.000	9.73	0.00	0.00	4.40
448	507	5.615544	CGCTGTTGTTTCTTCCTTGTAGATG	60.616	44.000	0.00	0.00	0.00	2.90
449	508	5.470098	GCTGTTGTTTCTTCCTTGTAGATGA	59.530	40.000	0.00	0.00	0.00	2.92
456	515	3.895656	TCTTCCTTGTAGATGATACCGGG	59.104	47.826	6.32	0.00	0.00	5.73
484	544	8.314751	TGGTTTTGTTTGTTCCTTCAAATCTAA	58.685	29.630	0.00	0.00	39.09	2.10
548	614	1.516603	GGTCTTCTCCAGCGCGTAC	60.517	63.158	8.43	0.00	0.00	3.67
556	622	1.591594	CCAGCGCGTACCATCGATT	60.592	57.895	8.43	0.00	0.00	3.34
676	775	5.468746	ACGTTGCAGTTAAGTAATCACATGT	59.531	36.000	0.00	0.00	0.00	3.21
677	776	6.647481	ACGTTGCAGTTAAGTAATCACATGTA	59.353	34.615	0.00	0.00	0.00	2.29
706	840	8.868522	TTTAGATGATTAATCATGGATCCACC	57.131	34.615	30.86	15.96	46.84	4.61
852	995	0.105760	AGAGCCGGACTGATGGATCT	60.106	55.000	5.05	0.00	45.73	2.75
876	1019	4.988540	CCAGTGTATATTACCACCATCGTG	59.011	45.833	0.00	0.00	39.91	4.35
885	1028	1.000506	ACCACCATCGTGTACACAGAC	59.999	52.381	24.98	0.00	38.41	3.51
905	1048	1.331756	CAGCAAGAACACAAACGAGCT	59.668	47.619	0.00	0.00	0.00	4.09
906	1049	1.599542	AGCAAGAACACAAACGAGCTC	59.400	47.619	2.73	2.73	0.00	4.09
909	1052	3.846383	GCAAGAACACAAACGAGCTCTTC	60.846	47.826	12.85	6.83	0.00	2.87
1022	1173	2.687805	CGCGGTCGTCTTCTCCTCA	61.688	63.158	0.00	0.00	0.00	3.86
1129	1295	0.540923	GCTCCTTGATGCCTCACTCT	59.459	55.000	0.00	0.00	0.00	3.24
1231	1397	3.201930	TGCTACTCTCTCAGATGAGACCT	59.798	47.826	8.46	0.00	45.48	3.85
1235	1401	3.245586	ACTCTCTCAGATGAGACCTTGGT	60.246	47.826	8.46	0.00	45.48	3.67
1366	1532	2.746277	CGTTCAAGGAAGGCCGGG	60.746	66.667	2.18	0.00	39.96	5.73
1432	1598	0.907486	CCTGGAGGACAAGATCAGCA	59.093	55.000	0.00	0.00	37.39	4.41
1463	1629	1.154016	CCGAGTCGACGCTTGTCAT	60.154	57.895	15.64	0.00	43.03	3.06
1980	2146	3.641434	ACGTGAGTAGCTACCCTAGAA	57.359	47.619	20.31	0.00	46.88	2.10
2004	2170	7.909777	ACACATGTATTTTCGTAGATCGTAG	57.090	36.000	0.00	0.00	40.80	3.51
2029	2196	2.041701	ACACTGCCATTTTGCTCCTTT	58.958	42.857	0.00	0.00	0.00	3.11
2147	2314	3.067833	CTCATCTCTAGGATACGTGCGA	58.932	50.000	0.00	0.00	46.39	5.10
2156	2323	0.527600	GATACGTGCGAGGCATCACA	60.528	55.000	0.00	0.00	41.91	3.58
2224	2391	7.174253	GGGAGATTTTACCGTGCATCATAATAA	59.826	37.037	0.00	0.00	0.00	1.40
2225	2392	8.015658	GGAGATTTTACCGTGCATCATAATAAC	58.984	37.037	0.00	0.00	0.00	1.89
2227	2394	7.500892	AGATTTTACCGTGCATCATAATAACCA	59.499	33.333	0.00	0.00	0.00	3.67
2230	2397	5.499139	ACCGTGCATCATAATAACCAAAG	57.501	39.130	0.00	0.00	0.00	2.77
2231	2398	4.338118	ACCGTGCATCATAATAACCAAAGG	59.662	41.667	0.00	0.00	0.00	3.11
2232	2399	4.578516	CCGTGCATCATAATAACCAAAGGA	59.421	41.667	0.00	0.00	0.00	3.36
2233	2400	5.241506	CCGTGCATCATAATAACCAAAGGAT	59.758	40.000	0.00	0.00	0.00	3.24
2234	2401	6.429692	CCGTGCATCATAATAACCAAAGGATA	59.570	38.462	0.00	0.00	0.00	2.59
2235	2402	7.121168	CCGTGCATCATAATAACCAAAGGATAT	59.879	37.037	0.00	0.00	0.00	1.63
2236	2403	8.514594	CGTGCATCATAATAACCAAAGGATATT	58.485	33.333	0.00	4.36	35.40	1.28
2298	2465	0.331616	GGCCTTTTAGAGCCCAAGGA	59.668	55.000	0.00	0.00	43.76	3.36
2504	2672	3.147595	CCTCGGCACCCTCGATCA	61.148	66.667	0.00	0.00	36.01	2.92
2718	2891	1.136891	TCCTCATCGACGTGCATCAAT	59.863	47.619	0.00	0.00	0.00	2.57
2719	2892	1.935873	CCTCATCGACGTGCATCAATT	59.064	47.619	0.00	0.00	0.00	2.32
2915	3088	6.313164	GTGTAAGTTGGATTTAGCTAGGACAC	59.687	42.308	0.00	0.00	0.00	3.67

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	5.128205	TCAACCATGGCTCTTCATGAATAG	58.872	41.667	13.04	14.79	45.30	1.73
5	6	1.404391	GCTCAACCATGGCTCTTCATG	59.596	52.381	13.04	0.00	42.92	3.07
20	21	2.627945	ACTTTTGACGACTGTGCTCAA	58.372	42.857	0.00	0.00	0.00	3.02
23	24	4.434713	AAAAACTTTTGACGACTGTGCT	57.565	36.364	0.00	0.00	0.00	4.40
122	128	6.048073	TCGACATGAAACAGAGAAACTTTG	57.952	37.500	0.00	0.00	0.00	2.77
129	135	5.296748	TGACAAATCGACATGAAACAGAGA	58.703	37.500	0.00	0.00	0.00	3.10
131	137	6.558771	AATGACAAATCGACATGAAACAGA	57.441	33.333	0.00	0.00	30.08	3.41
132	138	8.900511	AATAATGACAAATCGACATGAAACAG	57.099	30.769	0.00	0.00	30.08	3.16
139	145	7.864108	TCAGGAAATAATGACAAATCGACAT	57.136	32.000	0.00	0.00	0.00	3.06
143	149	9.869844	GTCTTATCAGGAAATAATGACAAATCG	57.130	33.333	0.00	0.00	0.00	3.34
155	161	8.160106	AGTCTTGACAAAGTCTTATCAGGAAAT	58.840	33.333	11.14	3.97	34.78	2.17
162	168	8.587950	CACGAATAGTCTTGACAAAGTCTTATC	58.412	37.037	3.49	0.00	34.29	1.75
178	184	3.852536	CACGAGAGAAACCACGAATAGTC	59.147	47.826	0.00	0.00	0.00	2.59
182	188	1.616865	TCCACGAGAGAAACCACGAAT	59.383	47.619	0.00	0.00	0.00	3.34
206	212	3.315749	ACAAATTAAAAGGCGTTCCGTCA	59.684	39.130	0.00	0.00	37.47	4.35
210	216	4.538917	TCGAACAAATTAAAAGGCGTTCC	58.461	39.130	0.00	0.00	31.28	3.62
212	218	5.427036	TCTCGAACAAATTAAAAGGCGTT	57.573	34.783	0.00	0.00	0.00	4.84
284	291	5.055812	TGAAATGAAAAACCAGGCATTGAC	58.944	37.500	0.00	0.00	31.86	3.18
286	293	5.122711	GGATGAAATGAAAAACCAGGCATTG	59.877	40.000	0.00	0.00	31.86	2.82
294	301	3.257127	TGGGTCGGATGAAATGAAAAACC	59.743	43.478	0.00	0.00	0.00	3.27
327	334	6.335471	TCACTGTAATCTCTGTCCGTTTTA	57.665	37.500	0.00	0.00	0.00	1.52
349	356	2.592861	GCATCCGTGCCTGGGATC	60.593	66.667	0.00	0.00	45.76	3.36
367	374	7.463431	TGTACCCAATATCTAACCAAAGTTGT	58.537	34.615	0.00	0.00	36.68	3.32
396	404	3.780804	TGGAAAGCTAGCCTTTACACA	57.219	42.857	12.13	8.55	46.87	3.72
418	477	2.578495	GAAGAAACAACAGCGCATCAG	58.422	47.619	11.47	0.00	0.00	2.90
427	486	7.606456	GGTATCATCTACAAGGAAGAAACAACA	59.394	37.037	0.00	0.00	0.00	3.33
429	488	6.816640	CGGTATCATCTACAAGGAAGAAACAA	59.183	38.462	0.00	0.00	0.00	2.83
456	515	3.855858	TGAAGGAACAAACAAAACCAGC	58.144	40.909	0.00	0.00	0.00	4.85
484	544	1.153429	GCTTTGGCGGATACCTCGT	60.153	57.895	0.00	0.00	0.00	4.18
527	587	2.817396	GCGCTGGAGAAGACCTGC	60.817	66.667	0.00	0.00	46.47	4.85
528	588	1.934220	TACGCGCTGGAGAAGACCTG	61.934	60.000	5.73	0.00	0.00	4.00
548	614	1.268896	ACGCCGTACTGTAATCGATGG	60.269	52.381	0.00	0.00	0.00	3.51
556	622	2.749076	ACATCTACAACGCCGTACTGTA	59.251	45.455	2.21	2.21	0.00	2.74
633	732	2.161609	CGTGCCAGTGGGATTAAGAAAC	59.838	50.000	12.15	0.00	35.59	2.78
687	814	5.651612	ACTGGTGGATCCATGATTAATCA	57.348	39.130	19.62	20.07	46.12	2.57
706	840	3.242944	CGCGTGGTAATCAAGATGTACTG	59.757	47.826	0.00	0.00	0.00	2.74
852	995	4.897076	ACGATGGTGGTAATATACACTGGA	59.103	41.667	0.00	0.00	37.72	3.86
876	1019	3.194861	TGTGTTCTTGCTGTCTGTGTAC	58.805	45.455	0.00	0.00	0.00	2.90
885	1028	1.331756	AGCTCGTTTGTGTTCTTGCTG	59.668	47.619	0.00	0.00	0.00	4.41
905	1048	3.511477	ACAAGTTAGGCAGAGAGGAAGA	58.489	45.455	0.00	0.00	0.00	2.87
906	1049	3.971245	ACAAGTTAGGCAGAGAGGAAG	57.029	47.619	0.00	0.00	0.00	3.46
909	1052	3.685139	TGAACAAGTTAGGCAGAGAGG	57.315	47.619	0.00	0.00	0.00	3.69
1235	1401	1.541118	TTCTCCCCTGCATGGACCA	60.541	57.895	9.96	0.00	38.35	4.02
1245	1411	0.725133	TCTTCCCCATCTTCTCCCCT	59.275	55.000	0.00	0.00	0.00	4.79
1366	1532	1.298859	CCGTACTCAAAGCTGTGGCC	61.299	60.000	3.47	0.00	39.73	5.36
1377	1543	3.511595	CCGTAGCGGCCGTACTCA	61.512	66.667	28.70	4.49	41.17	3.41
1463	1629	2.264480	CGTTCATGCCCGAGGACA	59.736	61.111	0.00	0.00	0.00	4.02
1644	1810	1.070786	GTCGCCCTGGTCAAGAACA	59.929	57.895	0.00	0.00	0.00	3.18
1684	1850	8.534496	TGCATATGGATCCCTCGATTATATATG	58.466	37.037	9.90	12.79	34.10	1.78
1695	1861	5.108187	ACATACATGCATATGGATCCCTC	57.892	43.478	9.90	0.00	35.61	4.30
1980	2146	7.700505	TCTACGATCTACGAAAATACATGTGT	58.299	34.615	9.11	0.00	45.77	3.72
2004	2170	4.082026	AGGAGCAAAATGGCAGTGTAATTC	60.082	41.667	0.00	0.00	35.83	2.17
2147	2314	1.376424	CGCTGAGGTTGTGATGCCT	60.376	57.895	0.00	0.00	37.91	4.75
2156	2323	3.323758	TAATGGCGCCGCTGAGGTT	62.324	57.895	23.90	9.84	43.70	3.50
2162	2329	4.891727	CGGACTAATGGCGCCGCT	62.892	66.667	23.90	14.03	37.08	5.52
2210	2377	5.749596	TCCTTTGGTTATTATGATGCACG	57.250	39.130	0.00	0.00	0.00	5.34
2230	2397	9.386010	TGCCCATATAATACACGTTAAATATCC	57.614	33.333	0.00	0.00	0.00	2.59
2234	2401	9.515226	AGATTGCCCATATAATACACGTTAAAT	57.485	29.630	0.00	0.00	0.00	1.40
2235	2402	8.911918	AGATTGCCCATATAATACACGTTAAA	57.088	30.769	0.00	0.00	0.00	1.52
2236	2403	9.999660	TTAGATTGCCCATATAATACACGTTAA	57.000	29.630	0.00	0.00	0.00	2.01
2237	2404	9.426837	GTTAGATTGCCCATATAATACACGTTA	57.573	33.333	0.00	0.00	0.00	3.18
2238	2405	7.117236	CGTTAGATTGCCCATATAATACACGTT	59.883	37.037	0.00	0.00	0.00	3.99
2336	2504	6.062095	CGAGAATACCCCTGGATTTAATTGT	58.938	40.000	0.00	0.00	0.00	2.71
2549	2717	1.186267	GGAGGAAGGAGTGACACGGT	61.186	60.000	0.00	0.00	0.00	4.83
2587	2758	1.382695	GACTTCCGATGGAGGGGGA	60.383	63.158	0.00	0.00	32.76	4.81
2625	2798	1.668101	GGCTCGTCGGAAGATCTGGT	61.668	60.000	0.00	0.00	45.19	4.00
2670	2843	2.683933	TCTCAGGTCGGGGAAGGC	60.684	66.667	0.00	0.00	0.00	4.35
2683	2856	1.126488	GAGGATGATGTGGCCTCTCA	58.874	55.000	3.32	6.85	43.79	3.27
2915	3088	8.814235	CATAAACCCTAACTAACTACATCAACG	58.186	37.037	0.00	0.00	0.00	4.10
3087	3265	6.266103	TGGAAACTCAATTCAAAAGCATCTCT	59.734	34.615	0.00	0.00	0.00	3.10
3169	3348	5.051641	CCAAATTATCTCGTCACTAAGTCGC	60.052	44.000	0.00	0.00	0.00	5.19

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.