Multiple sequence alignment - TraesCS2B01G068500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G068500 chr2B 100.000 2690 0 0 1 2690 34890778 34888089 0.000000e+00 4968.0
1 TraesCS2B01G068500 chr2B 88.338 1955 190 21 453 2388 34865002 34863067 0.000000e+00 2313.0
2 TraesCS2B01G068500 chr2A 92.913 1919 112 11 782 2689 23828223 23830128 0.000000e+00 2769.0
3 TraesCS2B01G068500 chr2A 91.792 1596 112 13 451 2038 23878307 23879891 0.000000e+00 2204.0
4 TraesCS2B01G068500 chr2A 87.859 453 28 12 4 456 15601931 15601506 8.590000e-140 507.0
5 TraesCS2B01G068500 chr2A 90.456 241 21 2 2149 2388 23879999 23880238 1.550000e-82 316.0
6 TraesCS2B01G068500 chr2A 100.000 89 0 0 2022 2110 23879910 23879998 5.960000e-37 165.0
7 TraesCS2B01G068500 chr2A 87.640 89 7 2 541 629 23827985 23828069 1.700000e-17 100.0
8 TraesCS2B01G068500 chr2A 97.727 44 1 0 709 752 23828187 23828230 2.870000e-10 76.8
9 TraesCS2B01G068500 chr2D 90.295 1999 166 19 451 2438 21641959 21643940 0.000000e+00 2591.0
10 TraesCS2B01G068500 chr2D 90.833 1669 134 14 451 2110 21680772 21682430 0.000000e+00 2217.0
11 TraesCS2B01G068500 chr2D 90.565 1611 129 14 835 2438 21620839 21622433 0.000000e+00 2111.0
12 TraesCS2B01G068500 chr2D 87.985 799 79 12 451 1242 21664357 21665145 0.000000e+00 928.0
13 TraesCS2B01G068500 chr2D 88.688 442 23 8 16 457 13508214 13507800 5.140000e-142 514.0
14 TraesCS2B01G068500 chr2D 91.020 245 17 2 2149 2388 21682431 21682675 2.580000e-85 326.0
15 TraesCS2B01G068500 chr2D 91.964 112 9 0 731 842 21619518 21619629 9.970000e-35 158.0
16 TraesCS2B01G068500 chr2D 91.667 96 6 2 534 629 21619298 21619391 6.040000e-27 132.0
17 TraesCS2B01G068500 chr2D 84.058 69 9 2 2541 2608 32195275 32195208 6.220000e-07 65.8
18 TraesCS2B01G068500 chr6A 82.033 1230 150 41 780 1967 604573922 604572722 0.000000e+00 981.0
19 TraesCS2B01G068500 chr6A 79.582 1293 195 41 708 1967 604456213 604454957 0.000000e+00 861.0
20 TraesCS2B01G068500 chr6D 81.057 1230 166 38 780 1967 457636689 457635485 0.000000e+00 918.0
21 TraesCS2B01G068500 chr6D 88.132 455 27 8 2 456 293397175 293396748 1.430000e-142 516.0
22 TraesCS2B01G068500 chr6B 80.922 1237 155 46 780 1967 696100180 696098976 0.000000e+00 902.0
23 TraesCS2B01G068500 chr6B 83.879 856 109 18 778 1625 695947353 695948187 0.000000e+00 789.0
24 TraesCS2B01G068500 chr6B 90.789 76 7 0 708 783 695947147 695947222 4.740000e-18 102.0
25 TraesCS2B01G068500 chr1D 88.987 454 21 17 2 455 67204261 67204685 3.940000e-148 534.0
26 TraesCS2B01G068500 chr1B 88.453 459 23 19 2 458 340329150 340329580 6.600000e-146 527.0
27 TraesCS2B01G068500 chr1B 87.991 458 25 18 2 456 338607376 338606946 5.140000e-142 514.0
28 TraesCS2B01G068500 chr1B 85.426 446 29 17 2 447 623702636 623703045 5.320000e-117 431.0
29 TraesCS2B01G068500 chr7D 88.210 458 25 4 2 458 76410626 76411055 1.100000e-143 520.0
30 TraesCS2B01G068500 chr4B 88.470 451 23 9 5 455 377733757 377733336 3.970000e-143 518.0
31 TraesCS2B01G068500 chr3D 88.210 458 21 19 2 457 564987297 564987723 1.430000e-142 516.0
32 TraesCS2B01G068500 chr5B 87.773 458 29 12 2 459 690618148 690617718 6.640000e-141 510.0
33 TraesCS2B01G068500 chr3B 87.859 453 26 13 2 454 534219703 534220126 3.090000e-139 505.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G068500 chr2B 34888089 34890778 2689 True 4968.000000 4968 100.000000 1 2690 1 chr2B.!!$R2 2689
1 TraesCS2B01G068500 chr2B 34863067 34865002 1935 True 2313.000000 2313 88.338000 453 2388 1 chr2B.!!$R1 1935
2 TraesCS2B01G068500 chr2A 23827985 23830128 2143 False 981.933333 2769 92.760000 541 2689 3 chr2A.!!$F1 2148
3 TraesCS2B01G068500 chr2A 23878307 23880238 1931 False 895.000000 2204 94.082667 451 2388 3 chr2A.!!$F2 1937
4 TraesCS2B01G068500 chr2D 21641959 21643940 1981 False 2591.000000 2591 90.295000 451 2438 1 chr2D.!!$F1 1987
5 TraesCS2B01G068500 chr2D 21680772 21682675 1903 False 1271.500000 2217 90.926500 451 2388 2 chr2D.!!$F4 1937
6 TraesCS2B01G068500 chr2D 21664357 21665145 788 False 928.000000 928 87.985000 451 1242 1 chr2D.!!$F2 791
7 TraesCS2B01G068500 chr2D 21619298 21622433 3135 False 800.333333 2111 91.398667 534 2438 3 chr2D.!!$F3 1904
8 TraesCS2B01G068500 chr6A 604572722 604573922 1200 True 981.000000 981 82.033000 780 1967 1 chr6A.!!$R2 1187
9 TraesCS2B01G068500 chr6A 604454957 604456213 1256 True 861.000000 861 79.582000 708 1967 1 chr6A.!!$R1 1259
10 TraesCS2B01G068500 chr6D 457635485 457636689 1204 True 918.000000 918 81.057000 780 1967 1 chr6D.!!$R2 1187
11 TraesCS2B01G068500 chr6B 696098976 696100180 1204 True 902.000000 902 80.922000 780 1967 1 chr6B.!!$R1 1187
12 TraesCS2B01G068500 chr6B 695947147 695948187 1040 False 445.500000 789 87.334000 708 1625 2 chr6B.!!$F1 917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 230 0.03213 GGAAGCGATGCGTATCTCCA 59.968 55.0 11.83 0.0 29.79 3.86 F
1035 2548 0.10230 CATCGTCGTCCATGGCAGTA 59.898 55.0 6.96 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1093 2606 0.251916 CCCTTGGTACTCATTGGCGA 59.748 55.0 0.0 0.0 0.00 5.54 R
2479 4065 0.251634 TGAGCATGGCATCGTTACCA 59.748 50.0 0.0 0.0 41.06 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.443934 CGACTCTTCTGGGAGGGT 57.556 61.111 0.00 0.00 37.63 4.34
18 19 2.194460 CGACTCTTCTGGGAGGGTC 58.806 63.158 0.00 0.00 42.52 4.46
19 20 0.612174 CGACTCTTCTGGGAGGGTCA 60.612 60.000 9.31 0.00 45.53 4.02
20 21 1.872773 GACTCTTCTGGGAGGGTCAT 58.127 55.000 4.15 0.00 44.79 3.06
21 22 2.687014 CGACTCTTCTGGGAGGGTCATA 60.687 54.545 9.31 0.00 45.53 2.15
22 23 2.962421 GACTCTTCTGGGAGGGTCATAG 59.038 54.545 4.15 0.00 44.79 2.23
23 24 2.316372 ACTCTTCTGGGAGGGTCATAGT 59.684 50.000 0.00 0.00 37.63 2.12
24 25 2.962421 CTCTTCTGGGAGGGTCATAGTC 59.038 54.545 0.00 0.00 0.00 2.59
25 26 2.587777 TCTTCTGGGAGGGTCATAGTCT 59.412 50.000 0.00 0.00 0.00 3.24
26 27 2.757894 TCTGGGAGGGTCATAGTCTC 57.242 55.000 0.00 0.00 0.00 3.36
27 28 1.218196 TCTGGGAGGGTCATAGTCTCC 59.782 57.143 0.00 0.00 44.64 3.71
28 29 1.219213 CTGGGAGGGTCATAGTCTCCT 59.781 57.143 8.28 0.00 44.72 3.69
29 30 1.218196 TGGGAGGGTCATAGTCTCCTC 59.782 57.143 8.28 0.00 44.72 3.71
32 33 2.593026 GAGGGTCATAGTCTCCTCCTG 58.407 57.143 0.00 0.00 39.75 3.86
33 34 1.219213 AGGGTCATAGTCTCCTCCTGG 59.781 57.143 0.00 0.00 0.00 4.45
34 35 1.710816 GGTCATAGTCTCCTCCTGGG 58.289 60.000 0.00 0.00 0.00 4.45
35 36 1.218196 GGTCATAGTCTCCTCCTGGGA 59.782 57.143 0.00 0.00 42.77 4.37
36 37 2.158234 GGTCATAGTCTCCTCCTGGGAT 60.158 54.545 0.00 0.00 44.15 3.85
37 38 3.582164 GTCATAGTCTCCTCCTGGGATT 58.418 50.000 0.00 0.00 44.15 3.01
38 39 3.970640 GTCATAGTCTCCTCCTGGGATTT 59.029 47.826 0.00 0.00 44.15 2.17
39 40 4.039852 GTCATAGTCTCCTCCTGGGATTTC 59.960 50.000 0.00 0.00 44.15 2.17
40 41 2.649742 AGTCTCCTCCTGGGATTTCA 57.350 50.000 0.00 0.00 44.15 2.69
41 42 3.142579 AGTCTCCTCCTGGGATTTCAT 57.857 47.619 0.00 0.00 44.15 2.57
42 43 3.468850 AGTCTCCTCCTGGGATTTCATT 58.531 45.455 0.00 0.00 44.15 2.57
43 44 3.201708 AGTCTCCTCCTGGGATTTCATTG 59.798 47.826 0.00 0.00 44.15 2.82
44 45 2.511218 TCTCCTCCTGGGATTTCATTGG 59.489 50.000 0.00 0.00 44.15 3.16
45 46 2.511218 CTCCTCCTGGGATTTCATTGGA 59.489 50.000 0.00 0.00 44.15 3.53
46 47 2.242196 TCCTCCTGGGATTTCATTGGAC 59.758 50.000 0.00 0.00 39.58 4.02
47 48 2.243221 CCTCCTGGGATTTCATTGGACT 59.757 50.000 0.00 0.00 37.23 3.85
48 49 3.309410 CCTCCTGGGATTTCATTGGACTT 60.309 47.826 0.00 0.00 37.23 3.01
49 50 4.347607 CTCCTGGGATTTCATTGGACTTT 58.652 43.478 0.00 0.00 0.00 2.66
50 51 4.344104 TCCTGGGATTTCATTGGACTTTC 58.656 43.478 0.00 0.00 0.00 2.62
51 52 4.044571 TCCTGGGATTTCATTGGACTTTCT 59.955 41.667 0.00 0.00 0.00 2.52
52 53 5.252863 TCCTGGGATTTCATTGGACTTTCTA 59.747 40.000 0.00 0.00 0.00 2.10
53 54 5.951747 CCTGGGATTTCATTGGACTTTCTAA 59.048 40.000 0.00 0.00 0.00 2.10
54 55 6.437162 CCTGGGATTTCATTGGACTTTCTAAA 59.563 38.462 0.00 0.00 0.00 1.85
55 56 7.039082 CCTGGGATTTCATTGGACTTTCTAAAA 60.039 37.037 0.00 0.00 0.00 1.52
56 57 7.895759 TGGGATTTCATTGGACTTTCTAAAAG 58.104 34.615 0.00 0.00 0.00 2.27
57 58 6.813649 GGGATTTCATTGGACTTTCTAAAAGC 59.186 38.462 0.00 0.00 0.00 3.51
58 59 6.528072 GGATTTCATTGGACTTTCTAAAAGCG 59.472 38.462 0.00 0.00 0.00 4.68
59 60 6.385649 TTTCATTGGACTTTCTAAAAGCGT 57.614 33.333 0.00 0.00 0.00 5.07
60 61 5.356882 TCATTGGACTTTCTAAAAGCGTG 57.643 39.130 0.00 0.00 0.00 5.34
61 62 4.215399 TCATTGGACTTTCTAAAAGCGTGG 59.785 41.667 0.00 0.00 0.00 4.94
62 63 3.478857 TGGACTTTCTAAAAGCGTGGA 57.521 42.857 0.00 0.00 0.00 4.02
63 64 3.399330 TGGACTTTCTAAAAGCGTGGAG 58.601 45.455 0.00 0.00 0.00 3.86
64 65 2.742589 GGACTTTCTAAAAGCGTGGAGG 59.257 50.000 0.00 0.00 0.00 4.30
65 66 3.556423 GGACTTTCTAAAAGCGTGGAGGA 60.556 47.826 0.00 0.00 0.00 3.71
66 67 3.665190 ACTTTCTAAAAGCGTGGAGGAG 58.335 45.455 0.00 0.00 0.00 3.69
67 68 2.762535 TTCTAAAAGCGTGGAGGAGG 57.237 50.000 0.00 0.00 0.00 4.30
68 69 0.249398 TCTAAAAGCGTGGAGGAGGC 59.751 55.000 0.00 0.00 35.57 4.70
69 70 1.079405 TAAAAGCGTGGAGGAGGCG 60.079 57.895 0.00 0.00 40.57 5.52
70 71 2.515996 TAAAAGCGTGGAGGAGGCGG 62.516 60.000 0.00 0.00 40.57 6.13
75 76 3.462678 GTGGAGGAGGCGGAGGTC 61.463 72.222 0.00 0.00 0.00 3.85
76 77 4.779733 TGGAGGAGGCGGAGGTCC 62.780 72.222 0.00 0.00 0.00 4.46
86 87 2.045926 GGAGGTCCGTGCTTGCAT 60.046 61.111 0.00 0.00 0.00 3.96
87 88 1.675641 GGAGGTCCGTGCTTGCATT 60.676 57.895 0.00 0.00 0.00 3.56
88 89 1.503542 GAGGTCCGTGCTTGCATTG 59.496 57.895 0.00 0.00 0.00 2.82
89 90 2.126346 GGTCCGTGCTTGCATTGC 60.126 61.111 0.46 0.46 0.00 3.56
90 91 2.126346 GTCCGTGCTTGCATTGCC 60.126 61.111 6.12 0.00 0.00 4.52
91 92 2.596923 TCCGTGCTTGCATTGCCA 60.597 55.556 6.12 0.00 0.00 4.92
92 93 2.126228 CCGTGCTTGCATTGCCAG 60.126 61.111 6.12 5.73 0.00 4.85
93 94 2.646719 CGTGCTTGCATTGCCAGT 59.353 55.556 11.01 0.00 0.00 4.00
94 95 1.443194 CGTGCTTGCATTGCCAGTC 60.443 57.895 11.01 4.83 0.00 3.51
95 96 1.859427 CGTGCTTGCATTGCCAGTCT 61.859 55.000 11.01 0.00 0.00 3.24
96 97 0.316204 GTGCTTGCATTGCCAGTCTT 59.684 50.000 11.01 0.00 0.00 3.01
97 98 1.042229 TGCTTGCATTGCCAGTCTTT 58.958 45.000 11.01 0.00 0.00 2.52
98 99 2.030007 GTGCTTGCATTGCCAGTCTTTA 60.030 45.455 11.01 0.00 0.00 1.85
99 100 2.827322 TGCTTGCATTGCCAGTCTTTAT 59.173 40.909 11.01 0.00 0.00 1.40
100 101 4.015764 TGCTTGCATTGCCAGTCTTTATA 58.984 39.130 11.01 0.00 0.00 0.98
101 102 4.646040 TGCTTGCATTGCCAGTCTTTATAT 59.354 37.500 11.01 0.00 0.00 0.86
102 103 5.827267 TGCTTGCATTGCCAGTCTTTATATA 59.173 36.000 11.01 0.00 0.00 0.86
103 104 6.016860 TGCTTGCATTGCCAGTCTTTATATAG 60.017 38.462 11.01 0.00 0.00 1.31
104 105 6.569226 GCTTGCATTGCCAGTCTTTATATAGG 60.569 42.308 11.01 0.00 0.00 2.57
105 106 5.940617 TGCATTGCCAGTCTTTATATAGGT 58.059 37.500 6.12 0.00 0.00 3.08
106 107 7.073457 TGCATTGCCAGTCTTTATATAGGTA 57.927 36.000 6.12 0.00 0.00 3.08
107 108 7.689299 TGCATTGCCAGTCTTTATATAGGTAT 58.311 34.615 6.12 0.00 0.00 2.73
108 109 8.163408 TGCATTGCCAGTCTTTATATAGGTATT 58.837 33.333 6.12 0.00 0.00 1.89
109 110 9.667107 GCATTGCCAGTCTTTATATAGGTATTA 57.333 33.333 0.00 0.00 0.00 0.98
113 114 9.824216 TGCCAGTCTTTATATAGGTATTACTCT 57.176 33.333 0.00 0.00 0.00 3.24
140 141 9.206690 ACAAAATCCTATAATCTGAGAGACTGA 57.793 33.333 0.00 0.00 0.00 3.41
141 142 9.474920 CAAAATCCTATAATCTGAGAGACTGAC 57.525 37.037 0.00 0.00 0.00 3.51
142 143 9.432982 AAAATCCTATAATCTGAGAGACTGACT 57.567 33.333 0.00 0.00 0.00 3.41
143 144 8.408043 AATCCTATAATCTGAGAGACTGACTG 57.592 38.462 0.00 0.00 0.00 3.51
144 145 5.767665 TCCTATAATCTGAGAGACTGACTGC 59.232 44.000 0.00 0.00 0.00 4.40
145 146 2.937469 AATCTGAGAGACTGACTGCG 57.063 50.000 0.00 0.00 0.00 5.18
146 147 1.832883 ATCTGAGAGACTGACTGCGT 58.167 50.000 0.00 0.00 0.00 5.24
147 148 0.877743 TCTGAGAGACTGACTGCGTG 59.122 55.000 0.00 0.00 0.00 5.34
148 149 0.109365 CTGAGAGACTGACTGCGTGG 60.109 60.000 0.00 0.00 0.00 4.94
149 150 0.823769 TGAGAGACTGACTGCGTGGT 60.824 55.000 0.00 0.00 0.00 4.16
150 151 0.315568 GAGAGACTGACTGCGTGGTT 59.684 55.000 0.00 0.00 0.00 3.67
151 152 0.032678 AGAGACTGACTGCGTGGTTG 59.967 55.000 0.00 0.00 0.00 3.77
152 153 0.249489 GAGACTGACTGCGTGGTTGT 60.249 55.000 0.00 0.00 0.00 3.32
153 154 0.530650 AGACTGACTGCGTGGTTGTG 60.531 55.000 0.00 0.00 0.00 3.33
154 155 1.498865 GACTGACTGCGTGGTTGTGG 61.499 60.000 0.00 0.00 0.00 4.17
155 156 1.523711 CTGACTGCGTGGTTGTGGT 60.524 57.895 0.00 0.00 0.00 4.16
156 157 1.775039 CTGACTGCGTGGTTGTGGTG 61.775 60.000 0.00 0.00 0.00 4.17
157 158 2.515991 ACTGCGTGGTTGTGGTGG 60.516 61.111 0.00 0.00 0.00 4.61
158 159 3.964875 CTGCGTGGTTGTGGTGGC 61.965 66.667 0.00 0.00 0.00 5.01
161 162 3.645975 CGTGGTTGTGGTGGCGAC 61.646 66.667 0.00 0.00 0.00 5.19
162 163 3.284449 GTGGTTGTGGTGGCGACC 61.284 66.667 11.57 11.57 43.48 4.79
163 164 4.572571 TGGTTGTGGTGGCGACCC 62.573 66.667 16.02 7.39 42.34 4.46
164 165 4.265056 GGTTGTGGTGGCGACCCT 62.265 66.667 16.02 0.00 42.34 4.34
165 166 2.668550 GTTGTGGTGGCGACCCTC 60.669 66.667 16.02 9.13 42.34 4.30
166 167 4.308458 TTGTGGTGGCGACCCTCG 62.308 66.667 16.02 0.00 42.34 4.63
168 169 3.998672 GTGGTGGCGACCCTCGAA 61.999 66.667 16.02 0.00 43.74 3.71
169 170 3.235481 TGGTGGCGACCCTCGAAA 61.235 61.111 16.02 0.00 43.74 3.46
170 171 2.031465 GGTGGCGACCCTCGAAAA 59.969 61.111 6.63 0.00 43.74 2.29
171 172 1.376812 GGTGGCGACCCTCGAAAAT 60.377 57.895 6.63 0.00 43.74 1.82
172 173 1.644786 GGTGGCGACCCTCGAAAATG 61.645 60.000 6.63 0.00 43.74 2.32
173 174 0.672401 GTGGCGACCCTCGAAAATGA 60.672 55.000 0.00 0.00 43.74 2.57
174 175 0.035598 TGGCGACCCTCGAAAATGAA 59.964 50.000 0.00 0.00 43.74 2.57
175 176 1.161843 GGCGACCCTCGAAAATGAAA 58.838 50.000 0.00 0.00 43.74 2.69
176 177 1.538075 GGCGACCCTCGAAAATGAAAA 59.462 47.619 0.00 0.00 43.74 2.29
177 178 2.163613 GGCGACCCTCGAAAATGAAAAT 59.836 45.455 0.00 0.00 43.74 1.82
178 179 3.366985 GGCGACCCTCGAAAATGAAAATT 60.367 43.478 0.00 0.00 43.74 1.82
179 180 4.234574 GCGACCCTCGAAAATGAAAATTT 58.765 39.130 0.00 0.00 43.74 1.82
180 181 4.684242 GCGACCCTCGAAAATGAAAATTTT 59.316 37.500 2.28 2.28 43.74 1.82
181 182 5.388371 GCGACCCTCGAAAATGAAAATTTTG 60.388 40.000 8.47 0.00 43.74 2.44
182 183 5.918011 CGACCCTCGAAAATGAAAATTTTGA 59.082 36.000 8.47 0.00 43.74 2.69
183 184 6.129194 CGACCCTCGAAAATGAAAATTTTGAC 60.129 38.462 8.47 0.00 43.74 3.18
184 185 6.578023 ACCCTCGAAAATGAAAATTTTGACA 58.422 32.000 8.47 1.23 34.24 3.58
185 186 6.701400 ACCCTCGAAAATGAAAATTTTGACAG 59.299 34.615 8.47 0.00 34.24 3.51
186 187 6.146021 CCCTCGAAAATGAAAATTTTGACAGG 59.854 38.462 8.47 2.46 34.24 4.00
187 188 6.701400 CCTCGAAAATGAAAATTTTGACAGGT 59.299 34.615 8.47 0.00 34.24 4.00
188 189 7.096065 CCTCGAAAATGAAAATTTTGACAGGTC 60.096 37.037 8.47 0.00 34.24 3.85
189 190 7.261325 TCGAAAATGAAAATTTTGACAGGTCA 58.739 30.769 8.47 0.00 34.24 4.02
190 191 7.925483 TCGAAAATGAAAATTTTGACAGGTCAT 59.075 29.630 8.47 0.77 39.64 3.06
191 192 8.216453 CGAAAATGAAAATTTTGACAGGTCATC 58.784 33.333 8.47 0.00 39.64 2.92
192 193 7.642071 AAATGAAAATTTTGACAGGTCATCG 57.358 32.000 8.47 0.00 39.64 3.84
193 194 5.766150 TGAAAATTTTGACAGGTCATCGT 57.234 34.783 8.47 0.00 39.64 3.73
194 195 6.142818 TGAAAATTTTGACAGGTCATCGTT 57.857 33.333 8.47 0.00 39.64 3.85
195 196 5.976534 TGAAAATTTTGACAGGTCATCGTTG 59.023 36.000 8.47 0.00 39.64 4.10
196 197 4.503741 AATTTTGACAGGTCATCGTTGG 57.496 40.909 2.52 0.00 39.64 3.77
197 198 2.631160 TTTGACAGGTCATCGTTGGT 57.369 45.000 2.52 0.00 39.64 3.67
198 199 1.877637 TTGACAGGTCATCGTTGGTG 58.122 50.000 2.52 0.00 39.64 4.17
199 200 0.034756 TGACAGGTCATCGTTGGTGG 59.965 55.000 0.00 0.00 34.14 4.61
200 201 0.320374 GACAGGTCATCGTTGGTGGA 59.680 55.000 0.00 0.00 0.00 4.02
201 202 0.984230 ACAGGTCATCGTTGGTGGAT 59.016 50.000 0.00 0.00 0.00 3.41
202 203 1.351017 ACAGGTCATCGTTGGTGGATT 59.649 47.619 0.00 0.00 0.00 3.01
203 204 2.224769 ACAGGTCATCGTTGGTGGATTT 60.225 45.455 0.00 0.00 0.00 2.17
204 205 2.162208 CAGGTCATCGTTGGTGGATTTG 59.838 50.000 0.00 0.00 0.00 2.32
205 206 2.039746 AGGTCATCGTTGGTGGATTTGA 59.960 45.455 0.00 0.00 0.00 2.69
206 207 2.817258 GGTCATCGTTGGTGGATTTGAA 59.183 45.455 0.00 0.00 0.00 2.69
207 208 3.254657 GGTCATCGTTGGTGGATTTGAAA 59.745 43.478 0.00 0.00 0.00 2.69
208 209 4.261825 GGTCATCGTTGGTGGATTTGAAAA 60.262 41.667 0.00 0.00 0.00 2.29
209 210 5.285651 GTCATCGTTGGTGGATTTGAAAAA 58.714 37.500 0.00 0.00 0.00 1.94
210 211 5.402270 GTCATCGTTGGTGGATTTGAAAAAG 59.598 40.000 0.00 0.00 0.00 2.27
211 212 4.314740 TCGTTGGTGGATTTGAAAAAGG 57.685 40.909 0.00 0.00 0.00 3.11
212 213 3.954904 TCGTTGGTGGATTTGAAAAAGGA 59.045 39.130 0.00 0.00 0.00 3.36
213 214 4.402793 TCGTTGGTGGATTTGAAAAAGGAA 59.597 37.500 0.00 0.00 0.00 3.36
214 215 4.744631 CGTTGGTGGATTTGAAAAAGGAAG 59.255 41.667 0.00 0.00 0.00 3.46
215 216 4.335400 TGGTGGATTTGAAAAAGGAAGC 57.665 40.909 0.00 0.00 0.00 3.86
216 217 3.243704 TGGTGGATTTGAAAAAGGAAGCG 60.244 43.478 0.00 0.00 0.00 4.68
217 218 3.005367 GGTGGATTTGAAAAAGGAAGCGA 59.995 43.478 0.00 0.00 0.00 4.93
218 219 4.321974 GGTGGATTTGAAAAAGGAAGCGAT 60.322 41.667 0.00 0.00 0.00 4.58
219 220 4.622740 GTGGATTTGAAAAAGGAAGCGATG 59.377 41.667 0.00 0.00 0.00 3.84
220 221 3.614176 GGATTTGAAAAAGGAAGCGATGC 59.386 43.478 0.00 0.00 0.00 3.91
221 222 2.330231 TTGAAAAAGGAAGCGATGCG 57.670 45.000 0.00 0.00 0.00 4.73
222 223 1.234821 TGAAAAAGGAAGCGATGCGT 58.765 45.000 0.00 0.00 0.00 5.24
223 224 2.418692 TGAAAAAGGAAGCGATGCGTA 58.581 42.857 0.00 0.00 0.00 4.42
224 225 3.006940 TGAAAAAGGAAGCGATGCGTAT 58.993 40.909 0.00 0.00 0.00 3.06
225 226 3.063452 TGAAAAAGGAAGCGATGCGTATC 59.937 43.478 3.04 3.04 0.00 2.24
226 227 2.604046 AAAGGAAGCGATGCGTATCT 57.396 45.000 11.83 0.00 0.00 1.98
227 228 2.141535 AAGGAAGCGATGCGTATCTC 57.858 50.000 11.83 3.51 0.00 2.75
228 229 0.315568 AGGAAGCGATGCGTATCTCC 59.684 55.000 11.83 11.34 0.00 3.71
229 230 0.032130 GGAAGCGATGCGTATCTCCA 59.968 55.000 11.83 0.00 29.79 3.86
230 231 1.538204 GGAAGCGATGCGTATCTCCAA 60.538 52.381 11.83 0.00 29.79 3.53
231 232 1.789464 GAAGCGATGCGTATCTCCAAG 59.211 52.381 11.83 0.00 0.00 3.61
232 233 0.598680 AGCGATGCGTATCTCCAAGC 60.599 55.000 11.83 7.03 0.00 4.01
233 234 0.598680 GCGATGCGTATCTCCAAGCT 60.599 55.000 11.83 0.00 0.00 3.74
234 235 1.858091 CGATGCGTATCTCCAAGCTT 58.142 50.000 11.83 0.00 0.00 3.74
235 236 2.862530 GCGATGCGTATCTCCAAGCTTA 60.863 50.000 11.83 0.00 0.00 3.09
236 237 3.579709 CGATGCGTATCTCCAAGCTTAT 58.420 45.455 11.83 0.00 0.00 1.73
237 238 4.733850 CGATGCGTATCTCCAAGCTTATA 58.266 43.478 11.83 0.00 0.00 0.98
238 239 5.344066 CGATGCGTATCTCCAAGCTTATAT 58.656 41.667 11.83 0.00 0.00 0.86
239 240 6.495706 CGATGCGTATCTCCAAGCTTATATA 58.504 40.000 11.83 0.00 0.00 0.86
240 241 7.142021 CGATGCGTATCTCCAAGCTTATATAT 58.858 38.462 11.83 0.00 0.00 0.86
241 242 8.290325 CGATGCGTATCTCCAAGCTTATATATA 58.710 37.037 11.83 0.00 0.00 0.86
242 243 9.619316 GATGCGTATCTCCAAGCTTATATATAG 57.381 37.037 6.21 0.00 0.00 1.31
243 244 8.521170 TGCGTATCTCCAAGCTTATATATAGT 57.479 34.615 0.00 0.00 0.00 2.12
244 245 8.622157 TGCGTATCTCCAAGCTTATATATAGTC 58.378 37.037 0.00 0.00 0.00 2.59
245 246 8.842280 GCGTATCTCCAAGCTTATATATAGTCT 58.158 37.037 0.00 0.00 0.00 3.24
297 298 2.498807 TCTCCAAGATCAATCGCTCG 57.501 50.000 0.00 0.00 0.00 5.03
298 299 1.067669 TCTCCAAGATCAATCGCTCGG 59.932 52.381 0.00 0.00 0.00 4.63
299 300 0.530650 TCCAAGATCAATCGCTCGGC 60.531 55.000 0.00 0.00 0.00 5.54
300 301 1.502163 CCAAGATCAATCGCTCGGCC 61.502 60.000 0.00 0.00 0.00 6.13
301 302 0.811219 CAAGATCAATCGCTCGGCCA 60.811 55.000 2.24 0.00 0.00 5.36
302 303 0.107703 AAGATCAATCGCTCGGCCAA 60.108 50.000 2.24 0.00 0.00 4.52
303 304 0.107456 AGATCAATCGCTCGGCCAAT 59.893 50.000 2.24 0.00 0.00 3.16
304 305 0.236711 GATCAATCGCTCGGCCAATG 59.763 55.000 2.24 0.00 0.00 2.82
305 306 0.464373 ATCAATCGCTCGGCCAATGT 60.464 50.000 2.24 0.00 0.00 2.71
306 307 1.063006 CAATCGCTCGGCCAATGTG 59.937 57.895 2.24 0.00 0.00 3.21
307 308 2.114670 AATCGCTCGGCCAATGTGG 61.115 57.895 2.24 0.00 41.55 4.17
308 309 2.819984 AATCGCTCGGCCAATGTGGT 62.820 55.000 2.24 0.00 40.46 4.16
309 310 3.803082 CGCTCGGCCAATGTGGTG 61.803 66.667 2.24 0.00 40.46 4.17
310 311 3.443045 GCTCGGCCAATGTGGTGG 61.443 66.667 2.24 0.00 40.46 4.61
319 320 2.934887 CCAATGTGGTGGCTCATATGA 58.065 47.619 5.07 5.07 31.35 2.15
320 321 3.493334 CCAATGTGGTGGCTCATATGAT 58.507 45.455 5.72 0.00 31.35 2.45
321 322 3.893200 CCAATGTGGTGGCTCATATGATT 59.107 43.478 5.72 0.00 31.35 2.57
322 323 4.261867 CCAATGTGGTGGCTCATATGATTG 60.262 45.833 5.72 4.58 31.35 2.67
323 324 2.300433 TGTGGTGGCTCATATGATTGC 58.700 47.619 5.72 7.13 0.00 3.56
324 325 2.092267 TGTGGTGGCTCATATGATTGCT 60.092 45.455 14.54 0.00 0.00 3.91
325 326 3.136260 TGTGGTGGCTCATATGATTGCTA 59.864 43.478 14.54 7.69 0.00 3.49
326 327 4.136796 GTGGTGGCTCATATGATTGCTAA 58.863 43.478 14.54 3.74 0.00 3.09
327 328 4.580167 GTGGTGGCTCATATGATTGCTAAA 59.420 41.667 14.54 1.42 0.00 1.85
328 329 5.242393 GTGGTGGCTCATATGATTGCTAAAT 59.758 40.000 14.54 0.00 0.00 1.40
329 330 5.834742 TGGTGGCTCATATGATTGCTAAATT 59.165 36.000 14.54 0.00 0.00 1.82
330 331 6.324512 TGGTGGCTCATATGATTGCTAAATTT 59.675 34.615 14.54 0.00 0.00 1.82
331 332 7.505248 TGGTGGCTCATATGATTGCTAAATTTA 59.495 33.333 14.54 0.00 0.00 1.40
332 333 8.025445 GGTGGCTCATATGATTGCTAAATTTAG 58.975 37.037 19.08 19.08 0.00 1.85
357 358 8.317679 AGCTTTGATAATAGATCAGATGGTACC 58.682 37.037 4.43 4.43 0.00 3.34
358 359 8.317679 GCTTTGATAATAGATCAGATGGTACCT 58.682 37.037 14.36 0.00 0.00 3.08
366 367 9.884814 AATAGATCAGATGGTACCTTAGTTAGT 57.115 33.333 14.36 0.00 0.00 2.24
367 368 7.589958 AGATCAGATGGTACCTTAGTTAGTG 57.410 40.000 14.36 0.00 0.00 2.74
368 369 6.551601 AGATCAGATGGTACCTTAGTTAGTGG 59.448 42.308 14.36 0.00 0.00 4.00
369 370 5.586877 TCAGATGGTACCTTAGTTAGTGGT 58.413 41.667 14.36 0.00 37.83 4.16
370 371 5.421056 TCAGATGGTACCTTAGTTAGTGGTG 59.579 44.000 14.36 0.00 35.48 4.17
371 372 5.187186 CAGATGGTACCTTAGTTAGTGGTGT 59.813 44.000 14.36 0.00 35.48 4.16
372 373 5.783875 AGATGGTACCTTAGTTAGTGGTGTT 59.216 40.000 14.36 0.00 35.48 3.32
373 374 5.473066 TGGTACCTTAGTTAGTGGTGTTC 57.527 43.478 14.36 0.00 35.48 3.18
374 375 4.284234 TGGTACCTTAGTTAGTGGTGTTCC 59.716 45.833 14.36 0.00 35.48 3.62
375 376 3.672767 ACCTTAGTTAGTGGTGTTCCG 57.327 47.619 0.00 0.00 36.30 4.30
376 377 2.289257 ACCTTAGTTAGTGGTGTTCCGC 60.289 50.000 0.00 0.00 43.92 5.54
377 378 2.344025 CTTAGTTAGTGGTGTTCCGCC 58.656 52.381 0.00 0.00 44.61 6.13
378 379 0.609662 TAGTTAGTGGTGTTCCGCCC 59.390 55.000 0.00 0.00 44.61 6.13
379 380 1.125711 AGTTAGTGGTGTTCCGCCCT 61.126 55.000 0.00 0.00 44.61 5.19
380 381 0.953960 GTTAGTGGTGTTCCGCCCTG 60.954 60.000 0.00 0.00 44.61 4.45
381 382 2.741486 TTAGTGGTGTTCCGCCCTGC 62.741 60.000 0.00 0.00 44.61 4.85
392 393 3.365535 GCCCTGCGTGGTGAATTT 58.634 55.556 0.00 0.00 0.00 1.82
393 394 1.665442 GCCCTGCGTGGTGAATTTT 59.335 52.632 0.00 0.00 0.00 1.82
394 395 0.667184 GCCCTGCGTGGTGAATTTTG 60.667 55.000 0.00 0.00 0.00 2.44
395 396 0.673437 CCCTGCGTGGTGAATTTTGT 59.327 50.000 0.00 0.00 0.00 2.83
396 397 1.883275 CCCTGCGTGGTGAATTTTGTA 59.117 47.619 0.00 0.00 0.00 2.41
397 398 2.294791 CCCTGCGTGGTGAATTTTGTAA 59.705 45.455 0.00 0.00 0.00 2.41
398 399 3.056891 CCCTGCGTGGTGAATTTTGTAAT 60.057 43.478 0.00 0.00 0.00 1.89
399 400 3.919804 CCTGCGTGGTGAATTTTGTAATG 59.080 43.478 0.00 0.00 0.00 1.90
400 401 4.320861 CCTGCGTGGTGAATTTTGTAATGA 60.321 41.667 0.00 0.00 0.00 2.57
401 402 4.793071 TGCGTGGTGAATTTTGTAATGAG 58.207 39.130 0.00 0.00 0.00 2.90
402 403 4.277174 TGCGTGGTGAATTTTGTAATGAGT 59.723 37.500 0.00 0.00 0.00 3.41
403 404 4.616802 GCGTGGTGAATTTTGTAATGAGTG 59.383 41.667 0.00 0.00 0.00 3.51
404 405 5.561919 GCGTGGTGAATTTTGTAATGAGTGA 60.562 40.000 0.00 0.00 0.00 3.41
405 406 6.611381 CGTGGTGAATTTTGTAATGAGTGAT 58.389 36.000 0.00 0.00 0.00 3.06
406 407 7.083858 CGTGGTGAATTTTGTAATGAGTGATT 58.916 34.615 0.00 0.00 0.00 2.57
407 408 7.060979 CGTGGTGAATTTTGTAATGAGTGATTG 59.939 37.037 0.00 0.00 0.00 2.67
408 409 7.867403 GTGGTGAATTTTGTAATGAGTGATTGT 59.133 33.333 0.00 0.00 0.00 2.71
409 410 9.072375 TGGTGAATTTTGTAATGAGTGATTGTA 57.928 29.630 0.00 0.00 0.00 2.41
410 411 9.906660 GGTGAATTTTGTAATGAGTGATTGTAA 57.093 29.630 0.00 0.00 0.00 2.41
423 424 9.905713 ATGAGTGATTGTAATAACTATGTTGGT 57.094 29.630 0.00 0.00 30.03 3.67
424 425 9.733556 TGAGTGATTGTAATAACTATGTTGGTT 57.266 29.630 0.00 0.00 30.03 3.67
530 538 0.165944 CAGGAATCAAACGTCCACGC 59.834 55.000 0.00 0.00 44.43 5.34
585 593 3.811722 TGTTCTGTTATGCTTTGAGCG 57.188 42.857 0.00 0.00 46.26 5.03
593 601 6.596106 TCTGTTATGCTTTGAGCGGTAATAAA 59.404 34.615 0.00 0.00 46.26 1.40
601 609 8.462811 TGCTTTGAGCGGTAATAAATTTATTCA 58.537 29.630 23.40 13.48 46.26 2.57
771 848 3.745975 ACACATGTCATACGAGTTGGTTG 59.254 43.478 0.00 0.00 0.00 3.77
785 862 6.539464 ACGAGTTGGTTGTAAGTTGATTAACA 59.461 34.615 2.93 0.00 39.30 2.41
789 1037 9.528018 AGTTGGTTGTAAGTTGATTAACAATTG 57.472 29.630 3.24 3.24 40.76 2.32
876 2351 6.017852 GCAGCAATACCAAGTAAGACTAATCC 60.018 42.308 0.00 0.00 0.00 3.01
883 2361 2.463752 AGTAAGACTAATCCACCCGCA 58.536 47.619 0.00 0.00 0.00 5.69
885 2363 2.109425 AAGACTAATCCACCCGCAAC 57.891 50.000 0.00 0.00 0.00 4.17
911 2403 3.941483 AGCTAACTTGGACATTGGAATCG 59.059 43.478 0.00 0.00 0.00 3.34
928 2420 4.511826 GGAATCGTTCGCATAGGATTTCTT 59.488 41.667 4.96 0.00 33.97 2.52
955 2447 8.841822 CGTCTATATAAACAGCTATTTGTCGAG 58.158 37.037 0.00 0.00 0.00 4.04
1035 2548 0.102300 CATCGTCGTCCATGGCAGTA 59.898 55.000 6.96 0.00 0.00 2.74
1103 2619 1.063649 GCACAGCATCGCCAATGAG 59.936 57.895 0.00 0.00 37.59 2.90
1146 2665 2.504026 GTCATGTCGAGCGTCGCA 60.504 61.111 21.09 0.00 40.21 5.10
1148 2667 1.801512 TCATGTCGAGCGTCGCAAG 60.802 57.895 21.09 12.68 40.21 4.01
1278 2797 2.659610 GTCGCTGTCCTTGCCTCT 59.340 61.111 0.00 0.00 0.00 3.69
1473 2995 3.127533 ATGCACGCCTTCTTCGCC 61.128 61.111 0.00 0.00 0.00 5.54
1482 3004 1.078759 CCTTCTTCGCCGCTGTAGTG 61.079 60.000 0.00 0.00 0.00 2.74
1489 3011 1.592223 GCCGCTGTAGTGTTCCTCT 59.408 57.895 0.00 0.00 0.00 3.69
1497 3019 0.541063 TAGTGTTCCTCTCGGTGGCA 60.541 55.000 0.00 0.00 0.00 4.92
1558 3080 1.202651 CCAACAGGAACACCGAAGAGT 60.203 52.381 0.00 0.00 0.00 3.24
1660 3182 2.266554 GATTCTCTGACAACGCTCCTG 58.733 52.381 0.00 0.00 0.00 3.86
1742 3265 8.972458 TTGCTAGGCATGTTTATGAATACTTA 57.028 30.769 0.00 0.00 38.76 2.24
1743 3266 9.573166 TTGCTAGGCATGTTTATGAATACTTAT 57.427 29.630 0.00 0.00 38.76 1.73
1849 3375 8.000709 AGAATGGGCTTGATTGTATCTTAATCA 58.999 33.333 0.00 0.00 41.40 2.57
1898 3437 1.135489 CATGTTCAGTGTCTGCCATGC 60.135 52.381 12.45 0.00 35.52 4.06
1915 3454 4.209080 GCCATGCTTGTCTTGTAAACAAAC 59.791 41.667 0.00 0.40 36.27 2.93
2112 3693 5.412904 GCATTTTACTTCTGTGCTAGACCTT 59.587 40.000 0.00 0.00 34.43 3.50
2136 3717 2.740981 GAGAGTGGCATGTTTGAGTGAG 59.259 50.000 0.00 0.00 0.00 3.51
2145 3726 4.202020 GCATGTTTGAGTGAGATGCATCAT 60.202 41.667 27.81 13.31 41.77 2.45
2147 3728 6.294010 GCATGTTTGAGTGAGATGCATCATAT 60.294 38.462 27.81 8.11 41.77 1.78
2205 3786 8.905702 GTGTTTATTGTTGCTAATGTCTTTCTG 58.094 33.333 0.00 0.00 0.00 3.02
2206 3787 8.081633 TGTTTATTGTTGCTAATGTCTTTCTGG 58.918 33.333 0.00 0.00 0.00 3.86
2271 3852 3.016736 CCGAAGATGGGTTAATTGCACT 58.983 45.455 0.00 0.00 0.00 4.40
2377 3963 6.478588 CAACGGAAGCACAATACTATTCTTC 58.521 40.000 0.00 0.00 0.00 2.87
2426 4012 3.645884 CCAAATCTCTGTGTTGCAAAGG 58.354 45.455 0.00 0.00 0.00 3.11
2427 4013 3.068590 CCAAATCTCTGTGTTGCAAAGGT 59.931 43.478 0.00 0.00 0.00 3.50
2428 4014 4.278170 CCAAATCTCTGTGTTGCAAAGGTA 59.722 41.667 0.00 0.00 0.00 3.08
2443 4029 5.207768 GCAAAGGTAATGTGCATTATCTCG 58.792 41.667 15.54 11.81 42.26 4.04
2447 4033 4.273480 AGGTAATGTGCATTATCTCGCAAC 59.727 41.667 10.88 0.00 39.80 4.17
2470 4056 5.464389 ACAAAAAGAAGCTGATGTGCATTTC 59.536 36.000 0.00 0.00 34.99 2.17
2475 4061 0.448990 GCTGATGTGCATTTCGCTGA 59.551 50.000 0.00 0.00 43.06 4.26
2479 4065 2.946990 TGATGTGCATTTCGCTGATCAT 59.053 40.909 0.00 0.00 43.06 2.45
2481 4067 1.402613 TGTGCATTTCGCTGATCATGG 59.597 47.619 0.00 0.00 43.06 3.66
2483 4069 2.613595 GTGCATTTCGCTGATCATGGTA 59.386 45.455 0.00 0.00 43.06 3.25
2490 4076 1.193203 CGCTGATCATGGTAACGATGC 59.807 52.381 0.00 0.00 42.51 3.91
2503 4089 0.826715 ACGATGCCATGCTCACTAGT 59.173 50.000 0.00 0.00 0.00 2.57
2504 4090 2.031870 ACGATGCCATGCTCACTAGTA 58.968 47.619 0.00 0.00 0.00 1.82
2505 4091 2.223829 ACGATGCCATGCTCACTAGTAC 60.224 50.000 0.00 0.00 0.00 2.73
2506 4092 2.223805 CGATGCCATGCTCACTAGTACA 60.224 50.000 0.00 0.00 0.00 2.90
2507 4093 2.967599 TGCCATGCTCACTAGTACAG 57.032 50.000 0.00 0.00 0.00 2.74
2508 4094 2.456577 TGCCATGCTCACTAGTACAGA 58.543 47.619 0.00 0.00 0.00 3.41
2509 4095 2.831526 TGCCATGCTCACTAGTACAGAA 59.168 45.455 0.00 0.00 0.00 3.02
2510 4096 3.260632 TGCCATGCTCACTAGTACAGAAA 59.739 43.478 0.00 0.00 0.00 2.52
2533 4119 3.326588 TGGCTAGCCAGAACTTTAGTTGA 59.673 43.478 32.88 4.26 41.89 3.18
2538 4124 3.747099 CCAGAACTTTAGTTGATGGCG 57.253 47.619 0.00 0.00 38.56 5.69
2542 4128 0.328258 ACTTTAGTTGATGGCGCCCT 59.672 50.000 26.77 15.82 0.00 5.19
2547 4133 4.425180 TTAGTTGATGGCGCCCTATTTA 57.575 40.909 26.77 3.54 0.00 1.40
2594 4180 3.067461 TCAAATAGTGGTGGTGTTTGCAC 59.933 43.478 0.00 0.00 44.53 4.57
2601 4187 1.137872 GGTGGTGTTTGCACATTTGGA 59.862 47.619 0.00 0.00 46.95 3.53
2629 4215 4.910458 ACTTTGTAAGGATAGTGCTGGT 57.090 40.909 0.00 0.00 0.00 4.00
2630 4216 4.579869 ACTTTGTAAGGATAGTGCTGGTG 58.420 43.478 0.00 0.00 0.00 4.17
2635 4221 1.362224 AGGATAGTGCTGGTGTTGGT 58.638 50.000 0.00 0.00 0.00 3.67
2636 4222 1.705186 AGGATAGTGCTGGTGTTGGTT 59.295 47.619 0.00 0.00 0.00 3.67
2679 4265 0.838554 TGGGCCCAGCTGTACTAACA 60.839 55.000 24.45 0.00 0.00 2.41
2684 4270 3.146847 GCCCAGCTGTACTAACAAGTTT 58.853 45.455 13.81 0.00 34.49 2.66
2689 4275 6.220930 CCAGCTGTACTAACAAGTTTGTAGA 58.779 40.000 13.81 6.02 41.31 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.872773 ATGACCCTCCCAGAAGAGTC 58.127 55.000 0.00 0.00 31.53 3.36
2 3 2.316372 ACTATGACCCTCCCAGAAGAGT 59.684 50.000 0.00 0.00 31.53 3.24
3 4 2.962421 GACTATGACCCTCCCAGAAGAG 59.038 54.545 0.00 0.00 0.00 2.85
4 5 2.587777 AGACTATGACCCTCCCAGAAGA 59.412 50.000 0.00 0.00 0.00 2.87
5 6 2.962421 GAGACTATGACCCTCCCAGAAG 59.038 54.545 0.00 0.00 0.00 2.85
6 7 2.359355 GGAGACTATGACCCTCCCAGAA 60.359 54.545 0.00 0.00 40.35 3.02
7 8 1.218196 GGAGACTATGACCCTCCCAGA 59.782 57.143 0.00 0.00 40.35 3.86
8 9 1.219213 AGGAGACTATGACCCTCCCAG 59.781 57.143 0.00 0.00 45.77 4.45
9 10 1.218196 GAGGAGACTATGACCCTCCCA 59.782 57.143 0.00 0.00 45.77 4.37
10 11 2.003937 GAGGAGACTATGACCCTCCC 57.996 60.000 0.00 0.00 45.77 4.30
12 13 2.593026 CAGGAGGAGACTATGACCCTC 58.407 57.143 0.00 0.00 44.43 4.30
13 14 1.219213 CCAGGAGGAGACTATGACCCT 59.781 57.143 0.00 0.00 44.43 4.34
14 15 1.710816 CCAGGAGGAGACTATGACCC 58.289 60.000 0.00 0.00 44.43 4.46
15 16 1.218196 TCCCAGGAGGAGACTATGACC 59.782 57.143 0.00 0.00 44.43 4.02
16 17 2.757894 TCCCAGGAGGAGACTATGAC 57.242 55.000 0.00 0.00 44.43 3.06
26 27 2.243221 AGTCCAATGAAATCCCAGGAGG 59.757 50.000 0.00 0.00 0.00 4.30
27 28 3.659183 AGTCCAATGAAATCCCAGGAG 57.341 47.619 0.00 0.00 0.00 3.69
28 29 4.044571 AGAAAGTCCAATGAAATCCCAGGA 59.955 41.667 0.00 0.00 0.00 3.86
29 30 4.347607 AGAAAGTCCAATGAAATCCCAGG 58.652 43.478 0.00 0.00 0.00 4.45
30 31 7.466746 TTTAGAAAGTCCAATGAAATCCCAG 57.533 36.000 0.00 0.00 0.00 4.45
31 32 7.525360 GCTTTTAGAAAGTCCAATGAAATCCCA 60.525 37.037 2.76 0.00 0.00 4.37
32 33 6.813649 GCTTTTAGAAAGTCCAATGAAATCCC 59.186 38.462 2.76 0.00 0.00 3.85
33 34 6.528072 CGCTTTTAGAAAGTCCAATGAAATCC 59.472 38.462 2.76 0.00 0.00 3.01
34 35 7.061094 CACGCTTTTAGAAAGTCCAATGAAATC 59.939 37.037 2.76 0.00 0.00 2.17
35 36 6.863126 CACGCTTTTAGAAAGTCCAATGAAAT 59.137 34.615 2.76 0.00 0.00 2.17
36 37 6.205784 CACGCTTTTAGAAAGTCCAATGAAA 58.794 36.000 2.76 0.00 0.00 2.69
37 38 5.278266 CCACGCTTTTAGAAAGTCCAATGAA 60.278 40.000 2.76 0.00 0.00 2.57
38 39 4.215399 CCACGCTTTTAGAAAGTCCAATGA 59.785 41.667 2.76 0.00 0.00 2.57
39 40 4.215399 TCCACGCTTTTAGAAAGTCCAATG 59.785 41.667 2.76 0.00 0.00 2.82
40 41 4.394729 TCCACGCTTTTAGAAAGTCCAAT 58.605 39.130 2.76 0.00 0.00 3.16
41 42 3.811083 TCCACGCTTTTAGAAAGTCCAA 58.189 40.909 2.76 0.00 0.00 3.53
42 43 3.399330 CTCCACGCTTTTAGAAAGTCCA 58.601 45.455 2.76 0.00 0.00 4.02
43 44 2.742589 CCTCCACGCTTTTAGAAAGTCC 59.257 50.000 2.76 0.00 0.00 3.85
44 45 3.660865 TCCTCCACGCTTTTAGAAAGTC 58.339 45.455 2.76 0.00 0.00 3.01
45 46 3.557264 CCTCCTCCACGCTTTTAGAAAGT 60.557 47.826 2.76 0.00 0.00 2.66
46 47 3.003480 CCTCCTCCACGCTTTTAGAAAG 58.997 50.000 0.00 0.00 0.00 2.62
47 48 2.874457 GCCTCCTCCACGCTTTTAGAAA 60.874 50.000 0.00 0.00 0.00 2.52
48 49 1.338769 GCCTCCTCCACGCTTTTAGAA 60.339 52.381 0.00 0.00 0.00 2.10
49 50 0.249398 GCCTCCTCCACGCTTTTAGA 59.751 55.000 0.00 0.00 0.00 2.10
50 51 1.084370 CGCCTCCTCCACGCTTTTAG 61.084 60.000 0.00 0.00 0.00 1.85
51 52 1.079405 CGCCTCCTCCACGCTTTTA 60.079 57.895 0.00 0.00 0.00 1.52
52 53 2.358737 CGCCTCCTCCACGCTTTT 60.359 61.111 0.00 0.00 0.00 2.27
53 54 4.394712 CCGCCTCCTCCACGCTTT 62.395 66.667 0.00 0.00 0.00 3.51
58 59 3.462678 GACCTCCGCCTCCTCCAC 61.463 72.222 0.00 0.00 0.00 4.02
59 60 4.779733 GGACCTCCGCCTCCTCCA 62.780 72.222 0.00 0.00 0.00 3.86
69 70 1.675641 AATGCAAGCACGGACCTCC 60.676 57.895 0.00 0.00 0.00 4.30
70 71 1.503542 CAATGCAAGCACGGACCTC 59.496 57.895 0.00 0.00 0.00 3.85
71 72 2.629656 GCAATGCAAGCACGGACCT 61.630 57.895 0.00 0.00 0.00 3.85
72 73 2.126346 GCAATGCAAGCACGGACC 60.126 61.111 0.00 0.00 0.00 4.46
73 74 2.126346 GGCAATGCAAGCACGGAC 60.126 61.111 7.79 0.00 0.00 4.79
74 75 2.596923 TGGCAATGCAAGCACGGA 60.597 55.556 7.79 0.00 0.00 4.69
75 76 2.126228 CTGGCAATGCAAGCACGG 60.126 61.111 7.79 7.01 0.00 4.94
76 77 1.443194 GACTGGCAATGCAAGCACG 60.443 57.895 9.98 8.31 31.74 5.34
77 78 0.316204 AAGACTGGCAATGCAAGCAC 59.684 50.000 9.98 4.45 31.74 4.40
78 79 1.042229 AAAGACTGGCAATGCAAGCA 58.958 45.000 9.98 0.00 31.74 3.91
79 80 3.515330 ATAAAGACTGGCAATGCAAGC 57.485 42.857 9.98 2.73 31.74 4.01
80 81 6.488006 ACCTATATAAAGACTGGCAATGCAAG 59.512 38.462 8.30 8.30 35.37 4.01
81 82 6.364701 ACCTATATAAAGACTGGCAATGCAA 58.635 36.000 7.79 0.00 0.00 4.08
82 83 5.940617 ACCTATATAAAGACTGGCAATGCA 58.059 37.500 7.79 0.00 0.00 3.96
83 84 8.567285 AATACCTATATAAAGACTGGCAATGC 57.433 34.615 0.00 0.00 0.00 3.56
87 88 9.824216 AGAGTAATACCTATATAAAGACTGGCA 57.176 33.333 0.00 0.00 0.00 4.92
114 115 9.206690 TCAGTCTCTCAGATTATAGGATTTTGT 57.793 33.333 0.00 0.00 0.00 2.83
115 116 9.474920 GTCAGTCTCTCAGATTATAGGATTTTG 57.525 37.037 0.00 0.00 0.00 2.44
116 117 9.432982 AGTCAGTCTCTCAGATTATAGGATTTT 57.567 33.333 0.00 0.00 0.00 1.82
117 118 8.859090 CAGTCAGTCTCTCAGATTATAGGATTT 58.141 37.037 0.00 0.00 0.00 2.17
118 119 7.039784 GCAGTCAGTCTCTCAGATTATAGGATT 60.040 40.741 0.00 0.00 0.00 3.01
119 120 6.434028 GCAGTCAGTCTCTCAGATTATAGGAT 59.566 42.308 0.00 0.00 0.00 3.24
120 121 5.767665 GCAGTCAGTCTCTCAGATTATAGGA 59.232 44.000 0.00 0.00 0.00 2.94
121 122 5.334802 CGCAGTCAGTCTCTCAGATTATAGG 60.335 48.000 0.00 0.00 0.00 2.57
122 123 5.238432 ACGCAGTCAGTCTCTCAGATTATAG 59.762 44.000 0.00 0.00 29.74 1.31
123 124 5.008118 CACGCAGTCAGTCTCTCAGATTATA 59.992 44.000 0.00 0.00 41.61 0.98
124 125 3.951037 ACGCAGTCAGTCTCTCAGATTAT 59.049 43.478 0.00 0.00 29.74 1.28
125 126 3.127721 CACGCAGTCAGTCTCTCAGATTA 59.872 47.826 0.00 0.00 41.61 1.75
126 127 2.094803 CACGCAGTCAGTCTCTCAGATT 60.095 50.000 0.00 0.00 41.61 2.40
127 128 1.472082 CACGCAGTCAGTCTCTCAGAT 59.528 52.381 0.00 0.00 41.61 2.90
128 129 0.877743 CACGCAGTCAGTCTCTCAGA 59.122 55.000 0.00 0.00 41.61 3.27
129 130 0.109365 CCACGCAGTCAGTCTCTCAG 60.109 60.000 0.00 0.00 41.61 3.35
130 131 0.823769 ACCACGCAGTCAGTCTCTCA 60.824 55.000 0.00 0.00 41.61 3.27
131 132 0.315568 AACCACGCAGTCAGTCTCTC 59.684 55.000 0.00 0.00 41.61 3.20
132 133 0.032678 CAACCACGCAGTCAGTCTCT 59.967 55.000 0.00 0.00 41.61 3.10
133 134 0.249489 ACAACCACGCAGTCAGTCTC 60.249 55.000 0.00 0.00 41.61 3.36
134 135 0.530650 CACAACCACGCAGTCAGTCT 60.531 55.000 0.00 0.00 41.61 3.24
135 136 1.498865 CCACAACCACGCAGTCAGTC 61.499 60.000 0.00 0.00 41.61 3.51
136 137 1.523711 CCACAACCACGCAGTCAGT 60.524 57.895 0.00 0.00 41.61 3.41
137 138 1.523711 ACCACAACCACGCAGTCAG 60.524 57.895 0.00 0.00 41.61 3.51
138 139 1.817520 CACCACAACCACGCAGTCA 60.818 57.895 0.00 0.00 41.61 3.41
139 140 2.542907 CCACCACAACCACGCAGTC 61.543 63.158 0.00 0.00 41.61 3.51
141 142 3.964875 GCCACCACAACCACGCAG 61.965 66.667 0.00 0.00 0.00 5.18
144 145 3.645975 GTCGCCACCACAACCACG 61.646 66.667 0.00 0.00 0.00 4.94
145 146 3.284449 GGTCGCCACCACAACCAC 61.284 66.667 0.00 0.00 43.17 4.16
146 147 4.572571 GGGTCGCCACCACAACCA 62.573 66.667 1.96 0.00 45.94 3.67
147 148 4.265056 AGGGTCGCCACCACAACC 62.265 66.667 1.96 0.00 45.94 3.77
148 149 2.668550 GAGGGTCGCCACCACAAC 60.669 66.667 1.96 0.00 45.94 3.32
149 150 4.308458 CGAGGGTCGCCACCACAA 62.308 66.667 1.96 0.00 45.94 3.33
151 152 2.999739 TTTTCGAGGGTCGCCACCAC 63.000 60.000 1.96 0.00 45.94 4.16
152 153 2.119484 ATTTTCGAGGGTCGCCACCA 62.119 55.000 1.96 0.00 45.94 4.17
153 154 1.376812 ATTTTCGAGGGTCGCCACC 60.377 57.895 0.00 0.00 40.21 4.61
154 155 0.672401 TCATTTTCGAGGGTCGCCAC 60.672 55.000 0.00 0.00 40.21 5.01
155 156 0.035598 TTCATTTTCGAGGGTCGCCA 59.964 50.000 0.00 0.00 40.21 5.69
156 157 1.161843 TTTCATTTTCGAGGGTCGCC 58.838 50.000 0.00 0.00 40.21 5.54
157 158 2.981400 TTTTCATTTTCGAGGGTCGC 57.019 45.000 0.00 0.00 40.21 5.19
158 159 5.918011 TCAAAATTTTCATTTTCGAGGGTCG 59.082 36.000 0.00 0.00 40.09 4.79
159 160 6.699642 TGTCAAAATTTTCATTTTCGAGGGTC 59.300 34.615 0.00 0.00 40.09 4.46
160 161 6.578023 TGTCAAAATTTTCATTTTCGAGGGT 58.422 32.000 0.00 0.00 40.09 4.34
161 162 6.146021 CCTGTCAAAATTTTCATTTTCGAGGG 59.854 38.462 0.00 0.00 40.09 4.30
162 163 6.701400 ACCTGTCAAAATTTTCATTTTCGAGG 59.299 34.615 0.00 1.51 40.09 4.63
163 164 7.434897 TGACCTGTCAAAATTTTCATTTTCGAG 59.565 33.333 0.00 0.00 40.09 4.04
164 165 7.261325 TGACCTGTCAAAATTTTCATTTTCGA 58.739 30.769 0.00 0.00 40.09 3.71
165 166 7.462109 TGACCTGTCAAAATTTTCATTTTCG 57.538 32.000 0.00 0.00 40.09 3.46
166 167 8.216453 CGATGACCTGTCAAAATTTTCATTTTC 58.784 33.333 3.79 0.00 40.09 2.29
167 168 7.710475 ACGATGACCTGTCAAAATTTTCATTTT 59.290 29.630 3.79 0.00 42.37 1.82
168 169 7.209475 ACGATGACCTGTCAAAATTTTCATTT 58.791 30.769 3.79 0.00 43.58 2.32
169 170 6.748132 ACGATGACCTGTCAAAATTTTCATT 58.252 32.000 3.79 0.00 43.58 2.57
170 171 6.331369 ACGATGACCTGTCAAAATTTTCAT 57.669 33.333 3.79 0.00 43.58 2.57
171 172 5.766150 ACGATGACCTGTCAAAATTTTCA 57.234 34.783 3.79 0.00 43.58 2.69
172 173 5.402270 CCAACGATGACCTGTCAAAATTTTC 59.598 40.000 3.79 0.00 43.58 2.29
173 174 5.163457 ACCAACGATGACCTGTCAAAATTTT 60.163 36.000 3.79 0.00 43.58 1.82
174 175 4.340950 ACCAACGATGACCTGTCAAAATTT 59.659 37.500 3.79 0.00 43.58 1.82
175 176 3.888930 ACCAACGATGACCTGTCAAAATT 59.111 39.130 3.79 0.00 43.58 1.82
176 177 3.253188 CACCAACGATGACCTGTCAAAAT 59.747 43.478 3.79 0.00 43.58 1.82
177 178 2.616376 CACCAACGATGACCTGTCAAAA 59.384 45.455 3.79 0.00 43.58 2.44
178 179 2.217750 CACCAACGATGACCTGTCAAA 58.782 47.619 3.79 0.00 43.58 2.69
179 180 1.542328 CCACCAACGATGACCTGTCAA 60.542 52.381 3.79 0.00 43.58 3.18
180 181 0.034756 CCACCAACGATGACCTGTCA 59.965 55.000 1.93 1.93 44.59 3.58
181 182 0.320374 TCCACCAACGATGACCTGTC 59.680 55.000 0.00 0.00 0.00 3.51
182 183 0.984230 ATCCACCAACGATGACCTGT 59.016 50.000 0.00 0.00 0.00 4.00
183 184 2.113860 AATCCACCAACGATGACCTG 57.886 50.000 0.00 0.00 0.00 4.00
184 185 2.039746 TCAAATCCACCAACGATGACCT 59.960 45.455 0.00 0.00 0.00 3.85
185 186 2.432444 TCAAATCCACCAACGATGACC 58.568 47.619 0.00 0.00 0.00 4.02
186 187 4.497473 TTTCAAATCCACCAACGATGAC 57.503 40.909 0.00 0.00 0.00 3.06
187 188 5.508825 CCTTTTTCAAATCCACCAACGATGA 60.509 40.000 0.00 0.00 0.00 2.92
188 189 4.685628 CCTTTTTCAAATCCACCAACGATG 59.314 41.667 0.00 0.00 0.00 3.84
189 190 4.586841 TCCTTTTTCAAATCCACCAACGAT 59.413 37.500 0.00 0.00 0.00 3.73
190 191 3.954904 TCCTTTTTCAAATCCACCAACGA 59.045 39.130 0.00 0.00 0.00 3.85
191 192 4.314740 TCCTTTTTCAAATCCACCAACG 57.685 40.909 0.00 0.00 0.00 4.10
192 193 4.511454 GCTTCCTTTTTCAAATCCACCAAC 59.489 41.667 0.00 0.00 0.00 3.77
193 194 4.702831 GCTTCCTTTTTCAAATCCACCAA 58.297 39.130 0.00 0.00 0.00 3.67
194 195 3.243704 CGCTTCCTTTTTCAAATCCACCA 60.244 43.478 0.00 0.00 0.00 4.17
195 196 3.005367 TCGCTTCCTTTTTCAAATCCACC 59.995 43.478 0.00 0.00 0.00 4.61
196 197 4.237349 TCGCTTCCTTTTTCAAATCCAC 57.763 40.909 0.00 0.00 0.00 4.02
197 198 4.808558 CATCGCTTCCTTTTTCAAATCCA 58.191 39.130 0.00 0.00 0.00 3.41
198 199 3.614176 GCATCGCTTCCTTTTTCAAATCC 59.386 43.478 0.00 0.00 0.00 3.01
199 200 3.301642 CGCATCGCTTCCTTTTTCAAATC 59.698 43.478 0.00 0.00 0.00 2.17
200 201 3.244976 CGCATCGCTTCCTTTTTCAAAT 58.755 40.909 0.00 0.00 0.00 2.32
201 202 2.034053 ACGCATCGCTTCCTTTTTCAAA 59.966 40.909 0.00 0.00 0.00 2.69
202 203 1.606668 ACGCATCGCTTCCTTTTTCAA 59.393 42.857 0.00 0.00 0.00 2.69
203 204 1.234821 ACGCATCGCTTCCTTTTTCA 58.765 45.000 0.00 0.00 0.00 2.69
204 205 3.309954 AGATACGCATCGCTTCCTTTTTC 59.690 43.478 0.00 0.00 36.20 2.29
205 206 3.270877 AGATACGCATCGCTTCCTTTTT 58.729 40.909 0.00 0.00 36.20 1.94
206 207 2.866762 GAGATACGCATCGCTTCCTTTT 59.133 45.455 0.00 0.00 36.20 2.27
207 208 2.474816 GAGATACGCATCGCTTCCTTT 58.525 47.619 0.00 0.00 36.20 3.11
208 209 1.269831 GGAGATACGCATCGCTTCCTT 60.270 52.381 0.00 0.00 36.20 3.36
209 210 0.315568 GGAGATACGCATCGCTTCCT 59.684 55.000 0.00 0.00 36.20 3.36
210 211 0.032130 TGGAGATACGCATCGCTTCC 59.968 55.000 0.00 0.00 36.20 3.46
211 212 1.789464 CTTGGAGATACGCATCGCTTC 59.211 52.381 0.00 0.00 36.20 3.86
212 213 1.858091 CTTGGAGATACGCATCGCTT 58.142 50.000 0.00 0.00 36.20 4.68
213 214 0.598680 GCTTGGAGATACGCATCGCT 60.599 55.000 0.00 0.00 36.20 4.93
214 215 0.598680 AGCTTGGAGATACGCATCGC 60.599 55.000 0.00 0.00 36.20 4.58
215 216 1.858091 AAGCTTGGAGATACGCATCG 58.142 50.000 0.00 0.00 36.20 3.84
216 217 9.619316 CTATATATAAGCTTGGAGATACGCATC 57.381 37.037 9.86 0.00 0.00 3.91
217 218 9.137459 ACTATATATAAGCTTGGAGATACGCAT 57.863 33.333 9.86 0.00 0.00 4.73
218 219 8.521170 ACTATATATAAGCTTGGAGATACGCA 57.479 34.615 9.86 0.00 0.00 5.24
219 220 8.842280 AGACTATATATAAGCTTGGAGATACGC 58.158 37.037 9.86 0.00 0.00 4.42
277 278 2.288702 CCGAGCGATTGATCTTGGAGAT 60.289 50.000 0.00 0.00 37.73 2.75
278 279 1.067669 CCGAGCGATTGATCTTGGAGA 59.932 52.381 0.00 0.00 36.21 3.71
279 280 1.495878 CCGAGCGATTGATCTTGGAG 58.504 55.000 0.00 0.00 36.21 3.86
280 281 0.530650 GCCGAGCGATTGATCTTGGA 60.531 55.000 0.00 0.00 36.21 3.53
281 282 1.502163 GGCCGAGCGATTGATCTTGG 61.502 60.000 0.00 0.00 37.02 3.61
282 283 0.811219 TGGCCGAGCGATTGATCTTG 60.811 55.000 0.00 0.00 0.00 3.02
283 284 0.107703 TTGGCCGAGCGATTGATCTT 60.108 50.000 0.00 0.00 0.00 2.40
284 285 0.107456 ATTGGCCGAGCGATTGATCT 59.893 50.000 0.00 0.00 0.00 2.75
285 286 0.236711 CATTGGCCGAGCGATTGATC 59.763 55.000 0.00 0.00 0.00 2.92
286 287 0.464373 ACATTGGCCGAGCGATTGAT 60.464 50.000 0.00 0.00 0.00 2.57
287 288 1.078497 ACATTGGCCGAGCGATTGA 60.078 52.632 0.00 0.00 0.00 2.57
288 289 1.063006 CACATTGGCCGAGCGATTG 59.937 57.895 0.00 0.00 0.00 2.67
289 290 2.114670 CCACATTGGCCGAGCGATT 61.115 57.895 0.00 0.00 0.00 3.34
290 291 2.514592 CCACATTGGCCGAGCGAT 60.515 61.111 0.00 0.00 0.00 4.58
291 292 4.015406 ACCACATTGGCCGAGCGA 62.015 61.111 0.00 0.00 42.67 4.93
292 293 3.803082 CACCACATTGGCCGAGCG 61.803 66.667 0.00 0.00 42.67 5.03
293 294 3.443045 CCACCACATTGGCCGAGC 61.443 66.667 0.00 0.00 42.67 5.03
299 300 2.934887 TCATATGAGCCACCACATTGG 58.065 47.619 0.00 0.00 45.02 3.16
300 301 4.794981 GCAATCATATGAGCCACCACATTG 60.795 45.833 11.78 8.29 0.00 2.82
301 302 3.319972 GCAATCATATGAGCCACCACATT 59.680 43.478 11.78 0.00 0.00 2.71
302 303 2.889045 GCAATCATATGAGCCACCACAT 59.111 45.455 11.78 0.00 0.00 3.21
303 304 2.092267 AGCAATCATATGAGCCACCACA 60.092 45.455 11.78 0.00 0.00 4.17
304 305 2.579873 AGCAATCATATGAGCCACCAC 58.420 47.619 11.78 0.00 0.00 4.16
305 306 4.436113 TTAGCAATCATATGAGCCACCA 57.564 40.909 11.78 0.00 0.00 4.17
306 307 5.972107 ATTTAGCAATCATATGAGCCACC 57.028 39.130 11.78 0.00 0.00 4.61
307 308 8.961294 CTAAATTTAGCAATCATATGAGCCAC 57.039 34.615 12.15 1.00 0.00 5.01
331 332 8.317679 GGTACCATCTGATCTATTATCAAAGCT 58.682 37.037 7.15 0.00 0.00 3.74
332 333 8.317679 AGGTACCATCTGATCTATTATCAAAGC 58.682 37.037 15.94 0.00 0.00 3.51
340 341 9.884814 ACTAACTAAGGTACCATCTGATCTATT 57.115 33.333 15.94 0.00 0.00 1.73
341 342 9.303116 CACTAACTAAGGTACCATCTGATCTAT 57.697 37.037 15.94 0.00 0.00 1.98
342 343 7.724506 CCACTAACTAAGGTACCATCTGATCTA 59.275 40.741 15.94 0.00 0.00 1.98
343 344 6.551601 CCACTAACTAAGGTACCATCTGATCT 59.448 42.308 15.94 0.00 0.00 2.75
344 345 6.324254 ACCACTAACTAAGGTACCATCTGATC 59.676 42.308 15.94 0.00 32.92 2.92
345 346 6.098409 CACCACTAACTAAGGTACCATCTGAT 59.902 42.308 15.94 0.00 33.49 2.90
346 347 5.421056 CACCACTAACTAAGGTACCATCTGA 59.579 44.000 15.94 0.00 33.49 3.27
347 348 5.187186 ACACCACTAACTAAGGTACCATCTG 59.813 44.000 15.94 3.70 33.49 2.90
348 349 5.339477 ACACCACTAACTAAGGTACCATCT 58.661 41.667 15.94 0.09 33.49 2.90
349 350 5.672421 ACACCACTAACTAAGGTACCATC 57.328 43.478 15.94 0.00 33.49 3.51
350 351 5.046087 GGAACACCACTAACTAAGGTACCAT 60.046 44.000 15.94 4.38 33.49 3.55
351 352 4.284234 GGAACACCACTAACTAAGGTACCA 59.716 45.833 15.94 0.00 33.49 3.25
352 353 4.619160 CGGAACACCACTAACTAAGGTACC 60.619 50.000 2.73 2.73 33.49 3.34
353 354 4.488879 CGGAACACCACTAACTAAGGTAC 58.511 47.826 0.00 0.00 33.49 3.34
354 355 3.056607 GCGGAACACCACTAACTAAGGTA 60.057 47.826 0.00 0.00 33.49 3.08
355 356 2.289257 GCGGAACACCACTAACTAAGGT 60.289 50.000 0.00 0.00 35.65 3.50
356 357 2.344025 GCGGAACACCACTAACTAAGG 58.656 52.381 0.00 0.00 0.00 2.69
357 358 2.344025 GGCGGAACACCACTAACTAAG 58.656 52.381 0.00 0.00 0.00 2.18
358 359 1.002315 GGGCGGAACACCACTAACTAA 59.998 52.381 0.00 0.00 27.72 2.24
359 360 0.609662 GGGCGGAACACCACTAACTA 59.390 55.000 0.00 0.00 27.72 2.24
360 361 1.125711 AGGGCGGAACACCACTAACT 61.126 55.000 0.00 0.00 27.72 2.24
361 362 0.953960 CAGGGCGGAACACCACTAAC 60.954 60.000 0.00 0.00 27.72 2.34
362 363 1.373435 CAGGGCGGAACACCACTAA 59.627 57.895 0.00 0.00 27.72 2.24
363 364 3.065306 CAGGGCGGAACACCACTA 58.935 61.111 0.00 0.00 27.72 2.74
364 365 4.643387 GCAGGGCGGAACACCACT 62.643 66.667 0.00 0.00 27.72 4.00
375 376 0.667184 CAAAATTCACCACGCAGGGC 60.667 55.000 0.00 0.00 43.89 5.19
376 377 0.673437 ACAAAATTCACCACGCAGGG 59.327 50.000 0.00 0.00 43.89 4.45
377 378 3.634568 TTACAAAATTCACCACGCAGG 57.365 42.857 0.00 0.00 45.67 4.85
378 379 4.793071 TCATTACAAAATTCACCACGCAG 58.207 39.130 0.00 0.00 0.00 5.18
379 380 4.277174 ACTCATTACAAAATTCACCACGCA 59.723 37.500 0.00 0.00 0.00 5.24
380 381 4.616802 CACTCATTACAAAATTCACCACGC 59.383 41.667 0.00 0.00 0.00 5.34
381 382 5.996219 TCACTCATTACAAAATTCACCACG 58.004 37.500 0.00 0.00 0.00 4.94
382 383 7.867403 ACAATCACTCATTACAAAATTCACCAC 59.133 33.333 0.00 0.00 0.00 4.16
383 384 7.950512 ACAATCACTCATTACAAAATTCACCA 58.049 30.769 0.00 0.00 0.00 4.17
384 385 9.906660 TTACAATCACTCATTACAAAATTCACC 57.093 29.630 0.00 0.00 0.00 4.02
397 398 9.905713 ACCAACATAGTTATTACAATCACTCAT 57.094 29.630 0.00 0.00 0.00 2.90
398 399 9.733556 AACCAACATAGTTATTACAATCACTCA 57.266 29.630 0.00 0.00 0.00 3.41
496 497 0.830444 TCCTGGGCGTACTTGTGAGT 60.830 55.000 0.00 0.00 39.97 3.41
530 538 0.109723 TTTGGAAGTGAGGAACCGGG 59.890 55.000 6.32 0.00 0.00 5.73
634 642 6.979817 TCCAAATTACATTGCACATTCTATGC 59.020 34.615 0.00 0.00 43.68 3.14
635 643 8.810427 GTTCCAAATTACATTGCACATTCTATG 58.190 33.333 0.00 0.00 0.00 2.23
636 644 7.701924 CGTTCCAAATTACATTGCACATTCTAT 59.298 33.333 0.00 0.00 0.00 1.98
637 645 7.026562 CGTTCCAAATTACATTGCACATTCTA 58.973 34.615 0.00 0.00 0.00 2.10
638 646 5.863397 CGTTCCAAATTACATTGCACATTCT 59.137 36.000 0.00 0.00 0.00 2.40
639 647 5.444481 GCGTTCCAAATTACATTGCACATTC 60.444 40.000 0.00 0.00 0.00 2.67
640 648 4.388469 GCGTTCCAAATTACATTGCACATT 59.612 37.500 0.00 0.00 0.00 2.71
785 862 9.442047 CAACTCTCTACCTAGTTTTGATCAATT 57.558 33.333 9.40 1.09 33.72 2.32
789 1037 8.308207 ACTTCAACTCTCTACCTAGTTTTGATC 58.692 37.037 0.00 0.00 33.72 2.92
801 1049 4.765856 TGTACCTGGACTTCAACTCTCTAC 59.234 45.833 0.00 0.00 0.00 2.59
842 1095 1.473677 TGGTATTGCTGCATGCTGAAC 59.526 47.619 26.71 16.81 43.37 3.18
876 2351 0.743345 GTTAGCTAGGGTTGCGGGTG 60.743 60.000 0.00 0.00 35.28 4.61
883 2361 4.567747 CCAATGTCCAAGTTAGCTAGGGTT 60.568 45.833 0.00 0.00 0.00 4.11
885 2363 3.199946 TCCAATGTCCAAGTTAGCTAGGG 59.800 47.826 0.00 0.00 0.00 3.53
911 2403 4.113354 AGACGAAGAAATCCTATGCGAAC 58.887 43.478 0.00 0.00 0.00 3.95
928 2420 8.562052 TCGACAAATAGCTGTTTATATAGACGA 58.438 33.333 8.23 10.10 0.00 4.20
947 2439 0.035317 ACTCCATGCTGCTCGACAAA 59.965 50.000 0.00 0.00 0.00 2.83
955 2447 3.760580 AGTAGGAATACTCCATGCTGC 57.239 47.619 0.00 0.00 45.24 5.25
1035 2548 4.532126 TCTTTGGTCAGTGGATGTATCTGT 59.468 41.667 0.00 0.00 0.00 3.41
1093 2606 0.251916 CCCTTGGTACTCATTGGCGA 59.748 55.000 0.00 0.00 0.00 5.54
1103 2619 2.361230 GTGCAGGCCCCTTGGTAC 60.361 66.667 0.00 0.00 0.00 3.34
1197 2716 1.683441 GTTGGTGAAGGACGGGGAT 59.317 57.895 0.00 0.00 0.00 3.85
1278 2797 1.188219 AGGAGAAGAAGAGGCACGCA 61.188 55.000 0.00 0.00 0.00 5.24
1473 2995 3.314339 CGAGAGGAACACTACAGCG 57.686 57.895 0.00 0.00 0.00 5.18
1489 3011 2.434185 GTCGCTGAATGCCACCGA 60.434 61.111 0.00 0.00 38.78 4.69
1497 3019 2.347490 AGCCCAACGTCGCTGAAT 59.653 55.556 4.15 0.00 32.98 2.57
1558 3080 2.494471 CCATTGGCAGATTCTTGAGCAA 59.506 45.455 0.00 0.00 0.00 3.91
1660 3182 1.153349 GATGGACGACCTTCTGGGC 60.153 63.158 11.60 0.00 39.10 5.36
1827 3353 6.899089 TCTGATTAAGATACAATCAAGCCCA 58.101 36.000 0.00 0.00 40.81 5.36
1938 3480 4.377226 GCACGGCACTACGTAATTTTACAA 60.377 41.667 0.00 0.00 46.75 2.41
2112 3693 2.369860 ACTCAAACATGCCACTCTCTCA 59.630 45.455 0.00 0.00 0.00 3.27
2136 3717 9.146984 CCCAATTAATCAAACATATGATGCATC 57.853 33.333 20.14 20.14 39.90 3.91
2145 3726 8.642935 TGTGAGTTCCCAATTAATCAAACATA 57.357 30.769 0.00 0.00 0.00 2.29
2147 3728 6.968263 TGTGAGTTCCCAATTAATCAAACA 57.032 33.333 0.00 0.00 0.00 2.83
2160 3741 5.767816 ACACACTTATTTTGTGAGTTCCC 57.232 39.130 9.38 0.00 46.18 3.97
2196 3777 6.720309 TCATTAACCATGATCCAGAAAGACA 58.280 36.000 0.00 0.00 36.94 3.41
2205 3786 6.040166 AGCACATTCTTCATTAACCATGATCC 59.960 38.462 0.00 0.00 41.82 3.36
2206 3787 7.035840 AGCACATTCTTCATTAACCATGATC 57.964 36.000 0.00 0.00 41.82 2.92
2271 3852 1.303561 AGCAAGAAGGGCGCATTCA 60.304 52.632 21.96 0.00 36.08 2.57
2388 3974 2.268076 GGCATTGCACAGGAACCGT 61.268 57.895 11.39 0.00 0.00 4.83
2389 3975 1.804396 TTGGCATTGCACAGGAACCG 61.804 55.000 11.39 0.00 0.00 4.44
2390 3976 0.392336 TTTGGCATTGCACAGGAACC 59.608 50.000 11.39 0.00 0.00 3.62
2426 4012 5.155509 TGTTGCGAGATAATGCACATTAC 57.844 39.130 5.26 1.26 41.57 1.89
2427 4013 5.809719 TTGTTGCGAGATAATGCACATTA 57.190 34.783 5.60 5.60 41.57 1.90
2428 4014 4.700268 TTGTTGCGAGATAATGCACATT 57.300 36.364 0.94 0.94 41.57 2.71
2443 4029 3.060070 GCACATCAGCTTCTTTTTGTTGC 60.060 43.478 0.00 0.00 0.00 4.17
2447 4033 5.388061 CGAAATGCACATCAGCTTCTTTTTG 60.388 40.000 0.00 0.00 34.99 2.44
2470 4056 1.193203 GCATCGTTACCATGATCAGCG 59.807 52.381 0.09 0.00 0.00 5.18
2479 4065 0.251634 TGAGCATGGCATCGTTACCA 59.748 50.000 0.00 0.00 41.06 3.25
2481 4067 1.656652 AGTGAGCATGGCATCGTTAC 58.343 50.000 0.00 0.00 0.00 2.50
2483 4069 1.208052 ACTAGTGAGCATGGCATCGTT 59.792 47.619 0.00 0.00 0.00 3.85
2490 4076 4.813161 CCATTTCTGTACTAGTGAGCATGG 59.187 45.833 5.39 11.51 0.00 3.66
2503 4089 3.519510 AGTTCTGGCTAGCCATTTCTGTA 59.480 43.478 35.93 15.42 46.15 2.74
2504 4090 2.307098 AGTTCTGGCTAGCCATTTCTGT 59.693 45.455 35.93 16.14 46.15 3.41
2505 4091 2.996631 AGTTCTGGCTAGCCATTTCTG 58.003 47.619 35.93 23.55 46.15 3.02
2506 4092 3.728385 AAGTTCTGGCTAGCCATTTCT 57.272 42.857 35.93 27.18 46.15 2.52
2507 4093 4.944317 ACTAAAGTTCTGGCTAGCCATTTC 59.056 41.667 35.93 25.61 46.15 2.17
2508 4094 4.923415 ACTAAAGTTCTGGCTAGCCATTT 58.077 39.130 35.93 30.95 46.15 2.32
2509 4095 4.576330 ACTAAAGTTCTGGCTAGCCATT 57.424 40.909 35.93 27.18 46.15 3.16
2510 4096 4.019321 TCAACTAAAGTTCTGGCTAGCCAT 60.019 41.667 35.93 22.39 39.88 4.40
2521 4107 1.132453 GGGCGCCATCAACTAAAGTTC 59.868 52.381 30.85 0.45 35.83 3.01
2528 4114 2.092646 TGTAAATAGGGCGCCATCAACT 60.093 45.455 30.85 18.16 0.00 3.16
2533 4119 3.149196 CTGATTGTAAATAGGGCGCCAT 58.851 45.455 30.85 26.24 0.00 4.40
2538 4124 3.066760 GTGGCACTGATTGTAAATAGGGC 59.933 47.826 11.13 0.00 38.81 5.19
2542 4128 4.917385 AGTGGTGGCACTGATTGTAAATA 58.083 39.130 18.45 0.00 33.58 1.40
2547 4133 4.778213 ATATAGTGGTGGCACTGATTGT 57.222 40.909 18.45 2.75 36.68 2.71
2594 4180 5.685511 CCTTACAAAGTTGTCGTTCCAAATG 59.314 40.000 0.00 0.00 42.35 2.32
2601 4187 5.178809 GCACTATCCTTACAAAGTTGTCGTT 59.821 40.000 0.00 0.00 42.35 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.