Multiple sequence alignment - TraesCS2B01G068200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G068200 chr2B 100.000 5405 0 0 1 5405 34646498 34651902 0.000000e+00 9982.0
1 TraesCS2B01G068200 chr2B 95.146 103 5 0 4955 5057 18841396 18841294 4.330000e-36 163.0
2 TraesCS2B01G068200 chr7B 95.261 2490 69 17 1 2464 547568702 547566236 0.000000e+00 3899.0
3 TraesCS2B01G068200 chr7B 97.030 2256 41 11 986 3239 547478221 547475990 0.000000e+00 3771.0
4 TraesCS2B01G068200 chr7B 98.601 929 8 3 3239 4162 547550363 547549435 0.000000e+00 1639.0
5 TraesCS2B01G068200 chr7B 98.170 929 10 4 3239 4162 547473699 547472773 0.000000e+00 1615.0
6 TraesCS2B01G068200 chr7B 93.469 980 42 13 1 973 547479227 547478263 0.000000e+00 1435.0
7 TraesCS2B01G068200 chr7B 95.641 780 14 9 2460 3239 547553410 547552651 0.000000e+00 1234.0
8 TraesCS2B01G068200 chr7B 93.814 679 13 8 4408 5057 547472295 547471617 0.000000e+00 994.0
9 TraesCS2B01G068200 chr7B 93.814 679 13 8 4408 5057 547548998 547548320 0.000000e+00 994.0
10 TraesCS2B01G068200 chr7B 94.273 227 13 0 4164 4390 547472706 547472480 1.110000e-91 348.0
11 TraesCS2B01G068200 chr7B 94.273 227 13 0 4164 4390 547549368 547549142 1.110000e-91 348.0
12 TraesCS2B01G068200 chr7B 98.182 55 1 0 4159 4213 687842621 687842567 4.460000e-16 97.1
13 TraesCS2B01G068200 chr7B 97.297 37 1 0 5057 5093 547471629 547471593 4.520000e-06 63.9
14 TraesCS2B01G068200 chr7B 97.297 37 1 0 5057 5093 547548332 547548296 4.520000e-06 63.9
15 TraesCS2B01G068200 chr2D 88.645 502 36 12 4572 5057 12546375 12545879 4.660000e-165 592.0
16 TraesCS2B01G068200 chr2D 95.238 336 14 1 2362 2697 12547346 12547013 1.030000e-146 531.0
17 TraesCS2B01G068200 chr2D 87.921 356 42 1 3645 3999 12546961 12546606 8.370000e-113 418.0
18 TraesCS2B01G068200 chr2D 97.101 138 4 0 2201 2338 12547471 12547334 3.260000e-57 233.0
19 TraesCS2B01G068200 chr2D 94.928 138 6 1 4921 5057 12428566 12428429 1.180000e-51 215.0
20 TraesCS2B01G068200 chr2D 91.667 72 4 1 4093 4162 12429104 12429033 1.240000e-16 99.0
21 TraesCS2B01G068200 chr2D 100.000 53 0 0 2201 2253 12547466 12547518 1.240000e-16 99.0
22 TraesCS2B01G068200 chrUn 94.273 227 13 0 4164 4390 478682068 478681842 1.110000e-91 348.0
23 TraesCS2B01G068200 chrUn 84.064 251 24 5 1638 1888 18144614 18144848 1.510000e-55 228.0
24 TraesCS2B01G068200 chrUn 100.000 80 0 0 4083 4162 478682214 478682135 1.210000e-31 148.0
25 TraesCS2B01G068200 chrUn 97.727 44 1 0 4167 4210 42259763 42259806 5.810000e-10 76.8
26 TraesCS2B01G068200 chr3D 79.348 276 29 19 5084 5356 347749178 347748928 9.310000e-38 169.0
27 TraesCS2B01G068200 chr4D 86.061 165 11 6 5192 5356 194328962 194328810 3.350000e-37 167.0
28 TraesCS2B01G068200 chr5D 83.636 165 15 6 5192 5356 442274580 442274732 1.570000e-30 145.0
29 TraesCS2B01G068200 chr3B 86.667 135 12 6 5225 5356 459975202 459975333 1.570000e-30 145.0
30 TraesCS2B01G068200 chr3B 81.212 165 13 9 5195 5356 106142564 106142415 3.420000e-22 117.0
31 TraesCS2B01G068200 chr3B 98.182 55 1 0 4161 4215 178397228 178397282 4.460000e-16 97.1
32 TraesCS2B01G068200 chr5B 100.000 52 0 0 4159 4210 641430307 641430358 4.460000e-16 97.1
33 TraesCS2B01G068200 chr4B 100.000 52 0 0 4161 4212 623124075 623124126 4.460000e-16 97.1
34 TraesCS2B01G068200 chr1D 95.082 61 1 1 4161 4219 279934400 279934460 1.600000e-15 95.3
35 TraesCS2B01G068200 chr7D 97.059 34 1 0 3575 3608 121194637 121194670 2.100000e-04 58.4
36 TraesCS2B01G068200 chr7A 100.000 28 0 0 3734 3761 714674721 714674694 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G068200 chr2B 34646498 34651902 5404 False 9982.00 9982 100.00000 1 5405 1 chr2B.!!$F1 5404
1 TraesCS2B01G068200 chr7B 547566236 547568702 2466 True 3899.00 3899 95.26100 1 2464 1 chr7B.!!$R1 2463
2 TraesCS2B01G068200 chr7B 547471593 547479227 7634 True 1371.15 3771 95.67550 1 5093 6 chr7B.!!$R3 5092
3 TraesCS2B01G068200 chr7B 547548296 547553410 5114 True 855.78 1639 95.92520 2460 5093 5 chr7B.!!$R4 2633
4 TraesCS2B01G068200 chr2D 12545879 12547471 1592 True 443.50 592 92.22625 2201 5057 4 chr2D.!!$R2 2856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 986 0.790814 GTCGCTTGAGCACTAACACC 59.209 55.0 3.65 0.0 42.21 4.16 F
2079 2118 0.464735 TTGTGTCAGGTCGGTTTGGG 60.465 55.0 0.00 0.0 0.00 4.12 F
2156 2195 0.243636 AATTTTGCTGCTGCGTACCC 59.756 50.0 11.21 0.0 43.34 3.69 F
2702 2741 0.539986 TTCCCCTTATGTGTCCGCTC 59.460 55.0 0.00 0.0 0.00 5.03 F
2889 2943 0.674895 GCCGAGATTCACTGTTGGCT 60.675 55.0 0.00 0.0 36.04 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2156 2195 0.171455 CAGGAGAGAAAGGGACGACG 59.829 60.000 0.0 0.0 0.00 5.12 R
3432 5780 0.179150 GCGCAAACTTTGGTGACACA 60.179 50.000 0.3 0.0 42.67 3.72 R
3663 6011 3.879295 CACACAAAGTTCATCACAGGAGT 59.121 43.478 0.0 0.0 0.00 3.85 R
4193 6663 0.669077 CTCATACTCCCTCCGTTCCG 59.331 60.000 0.0 0.0 0.00 4.30 R
4585 7258 1.632409 AGAGGCAAGAGCATTTCAGGA 59.368 47.619 0.0 0.0 44.61 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 1.704628 TCTTGGATGTTGCCTTCCTCA 59.295 47.619 0.00 0.00 36.20 3.86
93 94 1.372087 GGATGTTGCCTTCCTCAGCG 61.372 60.000 0.00 0.00 33.22 5.18
94 95 1.372087 GATGTTGCCTTCCTCAGCGG 61.372 60.000 0.00 0.00 0.00 5.52
95 96 3.435186 GTTGCCTTCCTCAGCGGC 61.435 66.667 0.00 0.00 44.02 6.53
96 97 3.640407 TTGCCTTCCTCAGCGGCT 61.640 61.111 0.00 0.00 44.09 5.52
97 98 3.907260 TTGCCTTCCTCAGCGGCTG 62.907 63.158 23.72 23.72 44.09 4.85
119 120 3.073650 GCTCCATGGAGGTAGGATTTGAT 59.926 47.826 36.92 0.00 42.19 2.57
199 200 9.799106 TTTCTCTCTCATTTCTATTGGTTTTCT 57.201 29.630 0.00 0.00 0.00 2.52
384 390 9.612066 AGTTGTAAAATCCACATTGAACATTTT 57.388 25.926 0.00 0.94 32.70 1.82
480 486 9.982291 GTGCGAATATTTCTTAAGTGTTTATGA 57.018 29.630 1.63 0.00 0.00 2.15
606 614 7.375017 ACGAAACATATTTTCAAACTCGTGAAC 59.625 33.333 0.00 0.00 37.24 3.18
632 640 7.216317 CGTTTCTTAAATTTCACGAATAGCCTG 59.784 37.037 0.00 0.00 0.00 4.85
708 716 8.237267 CCTAACACTTCATAAAAAGACCATGAC 58.763 37.037 0.00 0.00 0.00 3.06
710 718 5.181245 ACACTTCATAAAAAGACCATGACCG 59.819 40.000 0.00 0.00 0.00 4.79
728 736 3.401182 ACCGTATTTCTAAACACGCCAA 58.599 40.909 0.87 0.00 33.19 4.52
846 854 6.481976 TCAATATAGGTTTAATGCGTGGACAG 59.518 38.462 0.00 0.00 0.00 3.51
860 868 4.282068 CGTGGACAGTGTTTTTGAATGAG 58.718 43.478 0.00 0.00 0.00 2.90
933 941 9.003658 ACATTTAAGGAATACTATACATGCTGC 57.996 33.333 0.00 0.00 0.00 5.25
970 978 1.290324 GGACTCAGTCGCTTGAGCA 59.710 57.895 13.72 0.00 46.77 4.26
973 981 1.200252 GACTCAGTCGCTTGAGCACTA 59.800 52.381 13.72 0.00 46.77 2.74
974 982 1.613925 ACTCAGTCGCTTGAGCACTAA 59.386 47.619 13.72 0.00 46.77 2.24
975 983 1.989165 CTCAGTCGCTTGAGCACTAAC 59.011 52.381 3.65 0.00 42.21 2.34
976 984 1.339929 TCAGTCGCTTGAGCACTAACA 59.660 47.619 3.65 0.00 42.21 2.41
977 985 1.457303 CAGTCGCTTGAGCACTAACAC 59.543 52.381 3.65 0.00 42.21 3.32
978 986 0.790814 GTCGCTTGAGCACTAACACC 59.209 55.000 3.65 0.00 42.21 4.16
981 989 1.298859 GCTTGAGCACTAACACCCCG 61.299 60.000 0.00 0.00 41.59 5.73
1422 1459 6.314120 ACTCCTAATCTATGATCTGACAGCT 58.686 40.000 0.00 0.00 0.00 4.24
1433 1470 3.909776 TCTGACAGCTGAAATTTGCAG 57.090 42.857 23.35 14.28 36.47 4.41
1734 1771 7.512130 ACAAGTGGCTTATTCTGATGATGATA 58.488 34.615 0.00 0.00 0.00 2.15
1898 1935 9.139174 CTGGACGAGCATTTTTGTAATTTTTAT 57.861 29.630 0.00 0.00 0.00 1.40
2047 2086 4.241999 CTTGCTGCGGGTATGCGC 62.242 66.667 0.00 0.00 37.81 6.09
2079 2118 0.464735 TTGTGTCAGGTCGGTTTGGG 60.465 55.000 0.00 0.00 0.00 4.12
2119 2158 1.818642 GGTGCTCTGATTGTCTTGCT 58.181 50.000 0.00 0.00 0.00 3.91
2121 2160 1.467734 GTGCTCTGATTGTCTTGCTGG 59.532 52.381 0.00 0.00 0.00 4.85
2156 2195 0.243636 AATTTTGCTGCTGCGTACCC 59.756 50.000 11.21 0.00 43.34 3.69
2167 2206 2.964978 CGTACCCGTCGTCCCTTT 59.035 61.111 0.00 0.00 0.00 3.11
2329 2368 9.477484 TGTCTGTGTATTTAAGTCTCTTTCTTC 57.523 33.333 0.00 0.00 0.00 2.87
2697 2736 4.275936 CGATCCATTTTCCCCTTATGTGTC 59.724 45.833 0.00 0.00 0.00 3.67
2699 2738 2.687935 CCATTTTCCCCTTATGTGTCCG 59.312 50.000 0.00 0.00 0.00 4.79
2700 2739 1.828979 TTTTCCCCTTATGTGTCCGC 58.171 50.000 0.00 0.00 0.00 5.54
2701 2740 0.988832 TTTCCCCTTATGTGTCCGCT 59.011 50.000 0.00 0.00 0.00 5.52
2702 2741 0.539986 TTCCCCTTATGTGTCCGCTC 59.460 55.000 0.00 0.00 0.00 5.03
2797 2851 1.265905 CGTTGGTTGTAGGTGCTTTCC 59.734 52.381 0.00 0.00 0.00 3.13
2798 2852 2.583143 GTTGGTTGTAGGTGCTTTCCT 58.417 47.619 0.00 0.00 41.20 3.36
2818 2872 2.205022 TTTGGATCTGTTGGGCTCAG 57.795 50.000 0.00 0.00 0.00 3.35
2889 2943 0.674895 GCCGAGATTCACTGTTGGCT 60.675 55.000 0.00 0.00 36.04 4.75
2915 2969 8.232412 TGGGTTCCTTATATGTCTAGACAGTAT 58.768 37.037 28.29 24.01 45.48 2.12
2984 3038 1.065401 TGCTTTGTGGTCGCTTCTTTG 59.935 47.619 0.00 0.00 0.00 2.77
3410 5758 1.691976 TGTTGCCTACCATCGGATAGG 59.308 52.381 1.59 1.59 40.95 2.57
3438 5786 4.263572 CCGCCAAGGGGTGTGTCA 62.264 66.667 2.34 0.00 43.45 3.58
3520 5868 1.064017 TGCTTTGGGTTTCCTGTGAGT 60.064 47.619 0.00 0.00 0.00 3.41
3558 5906 7.600752 CCTGCTTCAGGTTCTATTAGTATTAGC 59.399 40.741 4.74 0.00 45.82 3.09
3705 6053 3.058639 GTGAATTGTGACTTGCCTGAGAC 60.059 47.826 0.00 0.00 0.00 3.36
4176 6646 9.997172 AGTTCCACATATCTAGATACATCCATA 57.003 33.333 14.71 0.00 0.00 2.74
4178 6648 8.451908 TCCACATATCTAGATACATCCATACG 57.548 38.462 14.71 0.00 0.00 3.06
4193 6663 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
4277 6747 6.920210 GCAGTAGAAAGCTTTTCTCATTGTTT 59.080 34.615 14.05 0.00 0.00 2.83
4327 6797 7.533289 TTTATTTACTTTTCCTGTTGGGGAG 57.467 36.000 0.00 0.00 36.66 4.30
4334 6804 1.814429 TCCTGTTGGGGAGACTTTGA 58.186 50.000 0.00 0.00 35.33 2.69
4367 6837 2.406596 GGGCCTACCAAAATGTCGTA 57.593 50.000 0.84 0.00 39.85 3.43
4374 6844 7.229106 GGGCCTACCAAAATGTCGTATATTTTA 59.771 37.037 0.84 0.00 36.02 1.52
4400 7044 6.742559 ACGGAGGTAATAGATGTTATTGGT 57.257 37.500 0.00 0.00 0.00 3.67
4401 7045 6.756221 ACGGAGGTAATAGATGTTATTGGTC 58.244 40.000 0.00 0.00 0.00 4.02
4402 7046 6.325545 ACGGAGGTAATAGATGTTATTGGTCA 59.674 38.462 0.00 0.00 0.00 4.02
4403 7047 7.016268 ACGGAGGTAATAGATGTTATTGGTCAT 59.984 37.037 0.00 0.00 0.00 3.06
4404 7048 7.878127 CGGAGGTAATAGATGTTATTGGTCATT 59.122 37.037 0.00 0.00 0.00 2.57
4405 7049 9.574516 GGAGGTAATAGATGTTATTGGTCATTT 57.425 33.333 0.00 0.00 0.00 2.32
4534 7178 3.055021 TGGTTGGTTCATCGTATTAGGCA 60.055 43.478 0.00 0.00 0.00 4.75
4563 7236 4.095610 GTTTATGCTGGTTTGCGATACAC 58.904 43.478 0.00 0.00 35.36 2.90
4585 7258 4.879545 ACGCCTTGATCGGTTATGTTATTT 59.120 37.500 0.00 0.00 0.00 1.40
4613 7286 3.928727 TGCTCTTGCCTCTTGATTTTG 57.071 42.857 0.00 0.00 38.71 2.44
4895 7574 3.325293 TTGAGCAGAGCAGTTTAGAGG 57.675 47.619 0.00 0.00 0.00 3.69
5045 7731 6.567687 TTCTGAAAATAAGATTTGGTCGCA 57.432 33.333 0.00 0.00 0.00 5.10
5046 7732 6.182039 TCTGAAAATAAGATTTGGTCGCAG 57.818 37.500 0.00 0.00 0.00 5.18
5047 7733 4.732784 TGAAAATAAGATTTGGTCGCAGC 58.267 39.130 0.00 0.00 0.00 5.25
5048 7734 3.782889 AAATAAGATTTGGTCGCAGCC 57.217 42.857 0.00 0.00 0.00 4.85
5049 7735 1.680338 ATAAGATTTGGTCGCAGCCC 58.320 50.000 0.00 0.00 0.00 5.19
5050 7736 0.393808 TAAGATTTGGTCGCAGCCCC 60.394 55.000 0.00 0.00 0.00 5.80
5051 7737 3.140814 GATTTGGTCGCAGCCCCC 61.141 66.667 0.00 0.00 0.00 5.40
5052 7738 3.936772 GATTTGGTCGCAGCCCCCA 62.937 63.158 0.00 0.00 0.00 4.96
5053 7739 3.301222 ATTTGGTCGCAGCCCCCAT 62.301 57.895 0.00 0.00 0.00 4.00
5054 7740 4.738998 TTGGTCGCAGCCCCCATG 62.739 66.667 0.00 0.00 0.00 3.66
5090 7776 0.460987 GAGAAGAGGCGACCATGGTG 60.461 60.000 25.52 15.67 0.00 4.17
5093 7779 2.125106 GAGGCGACCATGGTGACC 60.125 66.667 25.52 22.59 0.00 4.02
5094 7780 2.607750 AGGCGACCATGGTGACCT 60.608 61.111 25.52 24.53 0.00 3.85
5095 7781 2.436646 GGCGACCATGGTGACCTG 60.437 66.667 25.52 7.69 0.00 4.00
5096 7782 3.127533 GCGACCATGGTGACCTGC 61.128 66.667 25.52 14.04 0.00 4.85
5097 7783 2.436646 CGACCATGGTGACCTGCC 60.437 66.667 25.52 4.57 0.00 4.85
5098 7784 2.436646 GACCATGGTGACCTGCCG 60.437 66.667 25.52 0.00 0.00 5.69
5099 7785 4.722700 ACCATGGTGACCTGCCGC 62.723 66.667 18.99 0.00 0.00 6.53
5103 7789 4.408821 TGGTGACCTGCCGCCATC 62.409 66.667 2.11 0.00 41.38 3.51
5121 7807 4.129737 GGCAGCGCTCGTCCAGTA 62.130 66.667 7.13 0.00 0.00 2.74
5122 7808 2.105128 GCAGCGCTCGTCCAGTAT 59.895 61.111 7.13 0.00 0.00 2.12
5123 7809 2.233654 GCAGCGCTCGTCCAGTATG 61.234 63.158 7.13 0.00 0.00 2.39
5145 7831 4.520846 GAATTGAGCGCGGCGGTG 62.521 66.667 32.75 0.00 37.83 4.94
5171 7857 3.721706 GCAGGGAGGGTGGAGGTG 61.722 72.222 0.00 0.00 0.00 4.00
5172 7858 3.011517 CAGGGAGGGTGGAGGTGG 61.012 72.222 0.00 0.00 0.00 4.61
5175 7861 3.403558 GGAGGGTGGAGGTGGCTC 61.404 72.222 0.00 0.00 0.00 4.70
5176 7862 3.775654 GAGGGTGGAGGTGGCTCG 61.776 72.222 0.00 0.00 0.00 5.03
5180 7866 4.767255 GTGGAGGTGGCTCGCCTG 62.767 72.222 11.45 0.00 45.19 4.85
5183 7869 4.828925 GAGGTGGCTCGCCTGCTC 62.829 72.222 11.45 0.00 45.19 4.26
5185 7871 4.400961 GGTGGCTCGCCTGCTCTT 62.401 66.667 9.65 0.00 36.94 2.85
5186 7872 2.359230 GTGGCTCGCCTGCTCTTT 60.359 61.111 9.65 0.00 36.94 2.52
5187 7873 1.968540 GTGGCTCGCCTGCTCTTTT 60.969 57.895 9.65 0.00 36.94 2.27
5188 7874 1.672356 TGGCTCGCCTGCTCTTTTC 60.672 57.895 9.65 0.00 36.94 2.29
5189 7875 2.402572 GGCTCGCCTGCTCTTTTCC 61.403 63.158 0.00 0.00 0.00 3.13
5190 7876 1.672356 GCTCGCCTGCTCTTTTCCA 60.672 57.895 0.00 0.00 0.00 3.53
5191 7877 1.642952 GCTCGCCTGCTCTTTTCCAG 61.643 60.000 0.00 0.00 0.00 3.86
5192 7878 1.642952 CTCGCCTGCTCTTTTCCAGC 61.643 60.000 0.00 0.00 37.40 4.85
5193 7879 2.873288 GCCTGCTCTTTTCCAGCG 59.127 61.111 0.00 0.00 40.01 5.18
5194 7880 1.968540 GCCTGCTCTTTTCCAGCGT 60.969 57.895 0.00 0.00 40.01 5.07
5195 7881 1.871772 CCTGCTCTTTTCCAGCGTG 59.128 57.895 0.00 0.00 40.01 5.34
5196 7882 0.886490 CCTGCTCTTTTCCAGCGTGT 60.886 55.000 0.00 0.00 40.01 4.49
5197 7883 0.236711 CTGCTCTTTTCCAGCGTGTG 59.763 55.000 0.00 0.00 40.01 3.82
5209 7895 4.704833 CGTGTGGCCTGGTGGGAG 62.705 72.222 3.32 0.00 37.23 4.30
5210 7896 3.249189 GTGTGGCCTGGTGGGAGA 61.249 66.667 3.32 0.00 37.23 3.71
5211 7897 3.249189 TGTGGCCTGGTGGGAGAC 61.249 66.667 3.32 0.00 37.23 3.36
5212 7898 3.249189 GTGGCCTGGTGGGAGACA 61.249 66.667 3.32 0.00 37.23 3.41
5213 7899 2.930019 TGGCCTGGTGGGAGACAG 60.930 66.667 3.32 0.00 37.23 3.51
5214 7900 2.607750 GGCCTGGTGGGAGACAGA 60.608 66.667 0.00 0.00 36.86 3.41
5215 7901 2.664081 GGCCTGGTGGGAGACAGAG 61.664 68.421 0.00 0.00 36.86 3.35
5216 7902 1.610673 GCCTGGTGGGAGACAGAGA 60.611 63.158 0.00 0.00 36.86 3.10
5217 7903 1.893919 GCCTGGTGGGAGACAGAGAC 61.894 65.000 0.00 0.00 36.86 3.36
5218 7904 1.599606 CCTGGTGGGAGACAGAGACG 61.600 65.000 0.00 0.00 36.86 4.18
5219 7905 0.609406 CTGGTGGGAGACAGAGACGA 60.609 60.000 0.00 0.00 36.86 4.20
5220 7906 0.609406 TGGTGGGAGACAGAGACGAG 60.609 60.000 0.00 0.00 0.00 4.18
5221 7907 1.316706 GGTGGGAGACAGAGACGAGG 61.317 65.000 0.00 0.00 0.00 4.63
5222 7908 1.679305 TGGGAGACAGAGACGAGGC 60.679 63.158 0.00 0.00 0.00 4.70
5223 7909 1.679305 GGGAGACAGAGACGAGGCA 60.679 63.158 0.00 0.00 0.00 4.75
5224 7910 1.662438 GGGAGACAGAGACGAGGCAG 61.662 65.000 0.00 0.00 0.00 4.85
5225 7911 0.678366 GGAGACAGAGACGAGGCAGA 60.678 60.000 0.00 0.00 0.00 4.26
5226 7912 0.732571 GAGACAGAGACGAGGCAGAG 59.267 60.000 0.00 0.00 0.00 3.35
5227 7913 0.326595 AGACAGAGACGAGGCAGAGA 59.673 55.000 0.00 0.00 0.00 3.10
5228 7914 0.732571 GACAGAGACGAGGCAGAGAG 59.267 60.000 0.00 0.00 0.00 3.20
5229 7915 0.679640 ACAGAGACGAGGCAGAGAGG 60.680 60.000 0.00 0.00 0.00 3.69
5230 7916 1.077068 AGAGACGAGGCAGAGAGGG 60.077 63.158 0.00 0.00 0.00 4.30
5231 7917 1.077357 GAGACGAGGCAGAGAGGGA 60.077 63.158 0.00 0.00 0.00 4.20
5232 7918 1.077068 AGACGAGGCAGAGAGGGAG 60.077 63.158 0.00 0.00 0.00 4.30
5233 7919 2.043450 ACGAGGCAGAGAGGGAGG 60.043 66.667 0.00 0.00 0.00 4.30
5234 7920 2.837291 CGAGGCAGAGAGGGAGGG 60.837 72.222 0.00 0.00 0.00 4.30
5235 7921 2.693017 GAGGCAGAGAGGGAGGGA 59.307 66.667 0.00 0.00 0.00 4.20
5236 7922 1.760480 GAGGCAGAGAGGGAGGGAC 60.760 68.421 0.00 0.00 0.00 4.46
5237 7923 3.151022 GGCAGAGAGGGAGGGACG 61.151 72.222 0.00 0.00 0.00 4.79
5238 7924 3.151022 GCAGAGAGGGAGGGACGG 61.151 72.222 0.00 0.00 0.00 4.79
5239 7925 2.684104 CAGAGAGGGAGGGACGGA 59.316 66.667 0.00 0.00 0.00 4.69
5240 7926 1.454847 CAGAGAGGGAGGGACGGAG 60.455 68.421 0.00 0.00 0.00 4.63
5241 7927 2.123640 GAGAGGGAGGGACGGAGG 60.124 72.222 0.00 0.00 0.00 4.30
5242 7928 4.467107 AGAGGGAGGGACGGAGGC 62.467 72.222 0.00 0.00 0.00 4.70
5246 7932 3.839432 GGAGGGACGGAGGCGAAG 61.839 72.222 0.00 0.00 0.00 3.79
5263 7949 4.195308 GCGGTAAGCGTTCATGGA 57.805 55.556 0.00 0.00 35.41 3.41
5264 7950 1.713830 GCGGTAAGCGTTCATGGAC 59.286 57.895 0.00 0.00 35.41 4.02
5265 7951 1.995991 CGGTAAGCGTTCATGGACG 59.004 57.895 22.53 22.53 45.40 4.79
5266 7952 1.418342 CGGTAAGCGTTCATGGACGG 61.418 60.000 27.18 9.88 42.98 4.79
5267 7953 1.702491 GGTAAGCGTTCATGGACGGC 61.702 60.000 27.18 18.72 42.98 5.68
5268 7954 1.807981 TAAGCGTTCATGGACGGCG 60.808 57.895 27.18 4.80 42.98 6.46
5269 7955 2.215465 TAAGCGTTCATGGACGGCGA 62.215 55.000 27.18 10.65 42.98 5.54
5270 7956 3.554692 GCGTTCATGGACGGCGAG 61.555 66.667 27.18 0.00 42.98 5.03
5271 7957 2.885644 CGTTCATGGACGGCGAGG 60.886 66.667 19.23 0.00 39.27 4.63
5272 7958 2.264794 GTTCATGGACGGCGAGGT 59.735 61.111 16.62 0.00 0.00 3.85
5273 7959 2.100631 GTTCATGGACGGCGAGGTG 61.101 63.158 16.62 6.95 0.00 4.00
5274 7960 3.950794 TTCATGGACGGCGAGGTGC 62.951 63.158 16.62 0.00 45.38 5.01
5285 7971 4.148825 GAGGTGCGGCGTGGATCT 62.149 66.667 9.37 0.00 28.32 2.75
5286 7972 4.457496 AGGTGCGGCGTGGATCTG 62.457 66.667 9.37 0.00 0.00 2.90
5292 7978 4.101448 GGCGTGGATCTGGGCAGT 62.101 66.667 0.00 0.00 0.00 4.40
5293 7979 2.821366 GCGTGGATCTGGGCAGTG 60.821 66.667 0.00 0.00 0.00 3.66
5294 7980 2.821366 CGTGGATCTGGGCAGTGC 60.821 66.667 6.55 6.55 0.00 4.40
5295 7981 2.821366 GTGGATCTGGGCAGTGCG 60.821 66.667 9.45 0.00 0.00 5.34
5296 7982 3.002583 TGGATCTGGGCAGTGCGA 61.003 61.111 9.45 0.79 0.00 5.10
5297 7983 2.202987 GGATCTGGGCAGTGCGAG 60.203 66.667 9.45 7.73 0.00 5.03
5298 7984 2.202987 GATCTGGGCAGTGCGAGG 60.203 66.667 9.45 1.21 0.00 4.63
5299 7985 4.479993 ATCTGGGCAGTGCGAGGC 62.480 66.667 9.45 0.00 0.00 4.70
5308 7994 4.424711 GTGCGAGGCCATGGGGAA 62.425 66.667 15.13 0.00 35.59 3.97
5309 7995 4.113815 TGCGAGGCCATGGGGAAG 62.114 66.667 15.13 0.00 35.59 3.46
5310 7996 4.883354 GCGAGGCCATGGGGAAGG 62.883 72.222 15.13 0.00 35.59 3.46
5311 7997 3.089874 CGAGGCCATGGGGAAGGA 61.090 66.667 15.13 0.00 35.59 3.36
5312 7998 2.922234 GAGGCCATGGGGAAGGAG 59.078 66.667 15.13 0.00 35.59 3.69
5313 7999 2.003548 GAGGCCATGGGGAAGGAGT 61.004 63.158 15.13 0.00 35.59 3.85
5314 8000 2.276309 GAGGCCATGGGGAAGGAGTG 62.276 65.000 15.13 0.00 35.59 3.51
5315 8001 2.440980 GCCATGGGGAAGGAGTGC 60.441 66.667 15.13 0.00 35.59 4.40
5316 8002 2.124570 CCATGGGGAAGGAGTGCG 60.125 66.667 2.85 0.00 35.59 5.34
5317 8003 2.669133 CCATGGGGAAGGAGTGCGA 61.669 63.158 2.85 0.00 35.59 5.10
5318 8004 1.528824 CATGGGGAAGGAGTGCGAT 59.471 57.895 0.00 0.00 0.00 4.58
5319 8005 0.816825 CATGGGGAAGGAGTGCGATG 60.817 60.000 0.00 0.00 0.00 3.84
5320 8006 1.987807 ATGGGGAAGGAGTGCGATGG 61.988 60.000 0.00 0.00 0.00 3.51
5321 8007 2.190578 GGGAAGGAGTGCGATGGG 59.809 66.667 0.00 0.00 0.00 4.00
5322 8008 2.190578 GGAAGGAGTGCGATGGGG 59.809 66.667 0.00 0.00 0.00 4.96
5323 8009 2.367202 GGAAGGAGTGCGATGGGGA 61.367 63.158 0.00 0.00 0.00 4.81
5324 8010 1.602237 GAAGGAGTGCGATGGGGAA 59.398 57.895 0.00 0.00 0.00 3.97
5325 8011 0.035439 GAAGGAGTGCGATGGGGAAA 60.035 55.000 0.00 0.00 0.00 3.13
5326 8012 0.404040 AAGGAGTGCGATGGGGAAAA 59.596 50.000 0.00 0.00 0.00 2.29
5327 8013 0.035056 AGGAGTGCGATGGGGAAAAG 60.035 55.000 0.00 0.00 0.00 2.27
5328 8014 1.032114 GGAGTGCGATGGGGAAAAGG 61.032 60.000 0.00 0.00 0.00 3.11
5329 8015 1.000896 AGTGCGATGGGGAAAAGGG 60.001 57.895 0.00 0.00 0.00 3.95
5330 8016 1.001393 GTGCGATGGGGAAAAGGGA 60.001 57.895 0.00 0.00 0.00 4.20
5331 8017 1.032114 GTGCGATGGGGAAAAGGGAG 61.032 60.000 0.00 0.00 0.00 4.30
5332 8018 2.121538 GCGATGGGGAAAAGGGAGC 61.122 63.158 0.00 0.00 0.00 4.70
5333 8019 1.819632 CGATGGGGAAAAGGGAGCG 60.820 63.158 0.00 0.00 0.00 5.03
5334 8020 1.607612 GATGGGGAAAAGGGAGCGA 59.392 57.895 0.00 0.00 0.00 4.93
5335 8021 0.748367 GATGGGGAAAAGGGAGCGAC 60.748 60.000 0.00 0.00 0.00 5.19
5336 8022 1.497309 ATGGGGAAAAGGGAGCGACA 61.497 55.000 0.00 0.00 0.00 4.35
5337 8023 1.377333 GGGGAAAAGGGAGCGACAG 60.377 63.158 0.00 0.00 0.00 3.51
5338 8024 2.041115 GGGAAAAGGGAGCGACAGC 61.041 63.158 0.00 0.00 45.58 4.40
5350 8036 4.899239 GACAGCGGCGATGGGGAG 62.899 72.222 29.60 3.68 0.00 4.30
5352 8038 4.161295 CAGCGGCGATGGGGAGAA 62.161 66.667 18.75 0.00 0.00 2.87
5353 8039 3.854669 AGCGGCGATGGGGAGAAG 61.855 66.667 12.98 0.00 0.00 2.85
5354 8040 4.918201 GCGGCGATGGGGAGAAGG 62.918 72.222 12.98 0.00 0.00 3.46
5355 8041 4.241555 CGGCGATGGGGAGAAGGG 62.242 72.222 0.00 0.00 0.00 3.95
5356 8042 2.768344 GGCGATGGGGAGAAGGGA 60.768 66.667 0.00 0.00 0.00 4.20
5357 8043 2.812619 GGCGATGGGGAGAAGGGAG 61.813 68.421 0.00 0.00 0.00 4.30
5358 8044 2.825264 CGATGGGGAGAAGGGAGC 59.175 66.667 0.00 0.00 0.00 4.70
5359 8045 1.764054 CGATGGGGAGAAGGGAGCT 60.764 63.158 0.00 0.00 0.00 4.09
5360 8046 0.470080 CGATGGGGAGAAGGGAGCTA 60.470 60.000 0.00 0.00 0.00 3.32
5361 8047 1.347062 GATGGGGAGAAGGGAGCTAG 58.653 60.000 0.00 0.00 0.00 3.42
5362 8048 0.104725 ATGGGGAGAAGGGAGCTAGG 60.105 60.000 0.00 0.00 0.00 3.02
5363 8049 1.460497 GGGGAGAAGGGAGCTAGGG 60.460 68.421 0.00 0.00 0.00 3.53
5364 8050 1.315216 GGGAGAAGGGAGCTAGGGT 59.685 63.158 0.00 0.00 0.00 4.34
5365 8051 0.326713 GGGAGAAGGGAGCTAGGGTT 60.327 60.000 0.00 0.00 0.00 4.11
5366 8052 1.585895 GGAGAAGGGAGCTAGGGTTT 58.414 55.000 0.00 0.00 0.00 3.27
5367 8053 1.487142 GGAGAAGGGAGCTAGGGTTTC 59.513 57.143 0.00 0.00 0.00 2.78
5368 8054 1.137282 GAGAAGGGAGCTAGGGTTTCG 59.863 57.143 0.00 0.00 0.00 3.46
5369 8055 0.178301 GAAGGGAGCTAGGGTTTCGG 59.822 60.000 0.00 0.00 0.00 4.30
5370 8056 1.272554 AAGGGAGCTAGGGTTTCGGG 61.273 60.000 0.00 0.00 0.00 5.14
5371 8057 2.743179 GGGAGCTAGGGTTTCGGGG 61.743 68.421 0.00 0.00 0.00 5.73
5372 8058 2.743179 GGAGCTAGGGTTTCGGGGG 61.743 68.421 0.00 0.00 0.00 5.40
5373 8059 1.993948 GAGCTAGGGTTTCGGGGGT 60.994 63.158 0.00 0.00 0.00 4.95
5374 8060 2.253403 GAGCTAGGGTTTCGGGGGTG 62.253 65.000 0.00 0.00 0.00 4.61
5375 8061 2.995547 CTAGGGTTTCGGGGGTGG 59.004 66.667 0.00 0.00 0.00 4.61
5376 8062 1.614226 CTAGGGTTTCGGGGGTGGA 60.614 63.158 0.00 0.00 0.00 4.02
5377 8063 1.907222 CTAGGGTTTCGGGGGTGGAC 61.907 65.000 0.00 0.00 0.00 4.02
5378 8064 4.710167 GGGTTTCGGGGGTGGACG 62.710 72.222 0.00 0.00 0.00 4.79
5379 8065 3.628982 GGTTTCGGGGGTGGACGA 61.629 66.667 0.00 0.00 37.33 4.20
5380 8066 2.047560 GTTTCGGGGGTGGACGAG 60.048 66.667 0.00 0.00 40.51 4.18
5381 8067 3.315949 TTTCGGGGGTGGACGAGG 61.316 66.667 0.00 0.00 40.51 4.63
5382 8068 3.831727 TTTCGGGGGTGGACGAGGA 62.832 63.158 0.00 0.00 40.51 3.71
5383 8069 3.612115 TTCGGGGGTGGACGAGGAT 62.612 63.158 0.00 0.00 40.51 3.24
5384 8070 3.849951 CGGGGGTGGACGAGGATG 61.850 72.222 0.00 0.00 0.00 3.51
5385 8071 2.365105 GGGGGTGGACGAGGATGA 60.365 66.667 0.00 0.00 0.00 2.92
5386 8072 2.435693 GGGGGTGGACGAGGATGAG 61.436 68.421 0.00 0.00 0.00 2.90
5387 8073 1.381327 GGGGTGGACGAGGATGAGA 60.381 63.158 0.00 0.00 0.00 3.27
5388 8074 1.395826 GGGGTGGACGAGGATGAGAG 61.396 65.000 0.00 0.00 0.00 3.20
5389 8075 1.395826 GGGTGGACGAGGATGAGAGG 61.396 65.000 0.00 0.00 0.00 3.69
5390 8076 1.395826 GGTGGACGAGGATGAGAGGG 61.396 65.000 0.00 0.00 0.00 4.30
5391 8077 0.395862 GTGGACGAGGATGAGAGGGA 60.396 60.000 0.00 0.00 0.00 4.20
5392 8078 0.395862 TGGACGAGGATGAGAGGGAC 60.396 60.000 0.00 0.00 0.00 4.46
5393 8079 0.395862 GGACGAGGATGAGAGGGACA 60.396 60.000 0.00 0.00 0.00 4.02
5394 8080 0.741915 GACGAGGATGAGAGGGACAC 59.258 60.000 0.00 0.00 0.00 3.67
5395 8081 1.032657 ACGAGGATGAGAGGGACACG 61.033 60.000 0.00 0.00 0.00 4.49
5396 8082 1.729470 CGAGGATGAGAGGGACACGG 61.729 65.000 0.00 0.00 0.00 4.94
5397 8083 0.684805 GAGGATGAGAGGGACACGGT 60.685 60.000 0.00 0.00 0.00 4.83
5398 8084 0.972983 AGGATGAGAGGGACACGGTG 60.973 60.000 6.58 6.58 0.00 4.94
5399 8085 1.258445 GGATGAGAGGGACACGGTGT 61.258 60.000 14.66 14.66 0.00 4.16
5400 8086 0.108615 GATGAGAGGGACACGGTGTG 60.109 60.000 20.06 0.78 39.75 3.82
5401 8087 0.541998 ATGAGAGGGACACGGTGTGA 60.542 55.000 20.06 0.00 36.96 3.58
5402 8088 0.541998 TGAGAGGGACACGGTGTGAT 60.542 55.000 20.06 3.75 36.96 3.06
5403 8089 0.608640 GAGAGGGACACGGTGTGATT 59.391 55.000 20.06 3.03 36.96 2.57
5404 8090 0.608640 AGAGGGACACGGTGTGATTC 59.391 55.000 20.06 12.16 36.96 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 1.449353 CTACCTCCATGGAGCAGCC 59.551 63.158 32.97 0.00 40.69 4.85
94 95 1.050988 TCCTACCTCCATGGAGCAGC 61.051 60.000 32.97 0.00 40.69 5.25
95 96 1.727062 ATCCTACCTCCATGGAGCAG 58.273 55.000 32.97 28.19 40.69 4.24
96 97 2.173356 CAAATCCTACCTCCATGGAGCA 59.827 50.000 32.97 21.87 40.69 4.26
97 98 2.439507 TCAAATCCTACCTCCATGGAGC 59.560 50.000 32.97 0.00 40.69 4.70
98 99 4.989875 ATCAAATCCTACCTCCATGGAG 57.010 45.455 31.69 31.69 41.63 3.86
99 100 4.287067 GCTATCAAATCCTACCTCCATGGA 59.713 45.833 15.27 15.27 39.71 3.41
100 101 4.566488 GGCTATCAAATCCTACCTCCATGG 60.566 50.000 4.97 4.97 42.93 3.66
101 102 4.288105 AGGCTATCAAATCCTACCTCCATG 59.712 45.833 0.00 0.00 0.00 3.66
102 103 4.507342 AGGCTATCAAATCCTACCTCCAT 58.493 43.478 0.00 0.00 0.00 3.41
103 104 3.904339 GAGGCTATCAAATCCTACCTCCA 59.096 47.826 0.00 0.00 36.95 3.86
119 120 4.406003 GGAGGTTATTGACTTGAGAGGCTA 59.594 45.833 0.00 0.00 0.00 3.93
247 253 5.964958 AAATGTTCAATGAGGTCGACATT 57.035 34.783 18.91 5.89 38.83 2.71
449 455 9.691362 AACACTTAAGAAATATTCGCACATTTT 57.309 25.926 10.09 0.00 34.02 1.82
518 526 4.979197 TGATCGCGCAGTTTTTAAAAATGT 59.021 33.333 16.02 4.88 0.00 2.71
575 583 8.901748 CGAGTTTGAAAATATGTTTCGTGATTT 58.098 29.630 0.00 0.00 0.00 2.17
576 584 8.073768 ACGAGTTTGAAAATATGTTTCGTGATT 58.926 29.630 2.29 0.00 0.00 2.57
577 585 7.533900 CACGAGTTTGAAAATATGTTTCGTGAT 59.466 33.333 18.65 2.73 45.63 3.06
606 614 7.216317 CAGGCTATTCGTGAAATTTAAGAAACG 59.784 37.037 0.00 0.00 32.56 3.60
683 691 8.237267 GGTCATGGTCTTTTTATGAAGTGTTAG 58.763 37.037 0.00 0.00 33.10 2.34
684 692 7.094975 CGGTCATGGTCTTTTTATGAAGTGTTA 60.095 37.037 0.00 0.00 33.10 2.41
732 740 8.110860 ACAAATATGTTCCTGTAGTTTTCAGG 57.889 34.615 5.70 5.70 41.84 3.86
818 826 9.162764 GTCCACGCATTAAACCTATATTGATAT 57.837 33.333 0.00 0.00 0.00 1.63
819 827 8.151596 TGTCCACGCATTAAACCTATATTGATA 58.848 33.333 0.00 0.00 0.00 2.15
822 830 6.260050 ACTGTCCACGCATTAAACCTATATTG 59.740 38.462 0.00 0.00 0.00 1.90
824 832 5.758296 CACTGTCCACGCATTAAACCTATAT 59.242 40.000 0.00 0.00 0.00 0.86
846 854 5.650543 AGTGTTCACCTCATTCAAAAACAC 58.349 37.500 7.24 7.24 43.15 3.32
860 868 6.478344 TCATGTAATTTGCAAAAGTGTTCACC 59.522 34.615 17.19 0.00 0.00 4.02
1199 1236 2.197324 CGAGGGAGGAGGGAGAGG 59.803 72.222 0.00 0.00 0.00 3.69
1366 1403 5.170748 CAATTTGGCTGGATCAAAGGTTAC 58.829 41.667 0.00 0.00 37.50 2.50
1422 1459 8.883954 TCAATACAATTTCACTGCAAATTTCA 57.116 26.923 0.00 0.00 34.37 2.69
1433 1470 8.755696 TGCCAAGTATTTCAATACAATTTCAC 57.244 30.769 11.42 0.00 42.87 3.18
1855 1892 4.098960 CGTCCAGTTGTATACTATGGTGGT 59.901 45.833 16.26 0.00 34.56 4.16
1856 1893 4.340097 TCGTCCAGTTGTATACTATGGTGG 59.660 45.833 16.26 11.65 34.56 4.61
1857 1894 5.509716 TCGTCCAGTTGTATACTATGGTG 57.490 43.478 16.26 12.17 34.56 4.17
1898 1935 5.368145 AGTGTTCAGAAACAGTATTGAGCA 58.632 37.500 0.00 0.00 45.21 4.26
2026 2065 2.819595 ATACCCGCAGCAAGCACG 60.820 61.111 0.00 0.00 46.13 5.34
2047 2086 1.247567 GACACAAACCCCATGACCAG 58.752 55.000 0.00 0.00 0.00 4.00
2119 2158 3.611025 ATTTTCTCACCAAAGGGACCA 57.389 42.857 0.00 0.00 38.05 4.02
2121 2160 4.511454 GCAAAATTTTCTCACCAAAGGGAC 59.489 41.667 0.00 0.00 38.05 4.46
2156 2195 0.171455 CAGGAGAGAAAGGGACGACG 59.829 60.000 0.00 0.00 0.00 5.12
2167 2206 2.117423 TCCACCACGCAGGAGAGA 59.883 61.111 0.93 0.00 41.22 3.10
2317 2356 5.715070 CCATAACAGACGAAGAAAGAGACT 58.285 41.667 0.00 0.00 0.00 3.24
2329 2368 3.849911 TCTCTTTCAGCCATAACAGACG 58.150 45.455 0.00 0.00 0.00 4.18
2617 2656 6.997476 TGCACATATGTACCATGAATACACAT 59.003 34.615 8.32 4.11 35.43 3.21
2697 2736 0.597568 CTCTCTAGCCATCTGAGCGG 59.402 60.000 0.00 0.00 34.64 5.52
2699 2738 4.309099 CAATTCTCTCTAGCCATCTGAGC 58.691 47.826 0.00 0.00 0.00 4.26
2700 2739 4.202233 TGCAATTCTCTCTAGCCATCTGAG 60.202 45.833 0.00 0.00 0.00 3.35
2701 2740 3.708121 TGCAATTCTCTCTAGCCATCTGA 59.292 43.478 0.00 0.00 0.00 3.27
2702 2741 4.069300 TGCAATTCTCTCTAGCCATCTG 57.931 45.455 0.00 0.00 0.00 2.90
2797 2851 2.490903 CTGAGCCCAACAGATCCAAAAG 59.509 50.000 0.00 0.00 37.54 2.27
2798 2852 2.158475 ACTGAGCCCAACAGATCCAAAA 60.158 45.455 0.00 0.00 38.55 2.44
2818 2872 6.015434 ACATCCAAAAATACCAACAGGAAGAC 60.015 38.462 0.00 0.00 0.00 3.01
2889 2943 6.441222 ACTGTCTAGACATATAAGGAACCCA 58.559 40.000 25.35 0.00 41.01 4.51
2915 2969 4.219725 GGCTAACCTTTCAAATAAGCCACA 59.780 41.667 5.61 0.00 45.81 4.17
2984 3038 1.166989 TCGAAATAAACCCGGCAACC 58.833 50.000 0.00 0.00 0.00 3.77
3077 3131 9.105844 ACCACAATAGGAGCAAGTATAATCTAT 57.894 33.333 0.00 0.00 0.00 1.98
3078 3132 8.367911 CACCACAATAGGAGCAAGTATAATCTA 58.632 37.037 0.00 0.00 0.00 1.98
3186 3240 4.809673 CTTTTTCAGCTTCACATTACCCC 58.190 43.478 0.00 0.00 0.00 4.95
3432 5780 0.179150 GCGCAAACTTTGGTGACACA 60.179 50.000 0.30 0.00 42.67 3.72
3520 5868 5.371969 CCTGAAGCAGGTGACTCAAGTCA 62.372 52.174 8.75 8.75 46.07 3.41
3558 5906 9.288576 ACATATATTGTACCAGATCCAACAATG 57.711 33.333 16.66 8.61 41.38 2.82
3663 6011 3.879295 CACACAAAGTTCATCACAGGAGT 59.121 43.478 0.00 0.00 0.00 3.85
3705 6053 9.547753 ACTATATACATTCTGCAACTAGGTTTG 57.452 33.333 0.00 0.00 0.00 2.93
4162 6567 4.083484 TGTCGCACGTATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
4176 6646 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
4177 6647 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
4178 6648 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
4193 6663 0.669077 CTCATACTCCCTCCGTTCCG 59.331 60.000 0.00 0.00 0.00 4.30
4277 6747 3.370840 AAATATCAGCTCCTGCCACAA 57.629 42.857 0.00 0.00 40.80 3.33
4327 6797 2.673368 CAACGGAGGTAGCATCAAAGTC 59.327 50.000 0.00 0.00 0.00 3.01
4334 6804 2.590092 GCCCAACGGAGGTAGCAT 59.410 61.111 0.00 0.00 0.00 3.79
4374 6844 7.070821 ACCAATAACATCTATTACCTCCGTTCT 59.929 37.037 0.00 0.00 0.00 3.01
4378 6848 6.755206 TGACCAATAACATCTATTACCTCCG 58.245 40.000 0.00 0.00 0.00 4.63
4390 6860 8.137745 ACCAAATGAGAAATGACCAATAACAT 57.862 30.769 0.00 0.00 0.00 2.71
4400 7044 6.409524 AAGCTTCAACCAAATGAGAAATGA 57.590 33.333 0.00 0.00 0.00 2.57
4401 7045 6.309737 GCTAAGCTTCAACCAAATGAGAAATG 59.690 38.462 0.00 0.00 0.00 2.32
4402 7046 6.015180 TGCTAAGCTTCAACCAAATGAGAAAT 60.015 34.615 0.00 0.00 0.00 2.17
4403 7047 5.301551 TGCTAAGCTTCAACCAAATGAGAAA 59.698 36.000 0.00 0.00 0.00 2.52
4404 7048 4.826733 TGCTAAGCTTCAACCAAATGAGAA 59.173 37.500 0.00 0.00 0.00 2.87
4405 7049 4.397420 TGCTAAGCTTCAACCAAATGAGA 58.603 39.130 0.00 0.00 0.00 3.27
4406 7050 4.771590 TGCTAAGCTTCAACCAAATGAG 57.228 40.909 0.00 0.00 0.00 2.90
4534 7178 5.101628 CGCAAACCAGCATAAACATTACAT 58.898 37.500 0.00 0.00 0.00 2.29
4546 7190 2.158300 CGTGTATCGCAAACCAGCA 58.842 52.632 0.00 0.00 0.00 4.41
4563 7236 5.418310 AAATAACATAACCGATCAAGGCG 57.582 39.130 0.00 0.00 33.69 5.52
4585 7258 1.632409 AGAGGCAAGAGCATTTCAGGA 59.368 47.619 0.00 0.00 44.61 3.86
4613 7286 7.387948 TCTGAGAGTTTTACAAGCCAATCTTAC 59.612 37.037 0.00 0.00 32.74 2.34
4735 7414 5.123227 CCTCAAGGTCTAACACAAAAGTGA 58.877 41.667 2.22 0.00 0.00 3.41
4918 7597 1.920574 CTCTACGTGCTGATTTCACCG 59.079 52.381 0.00 0.00 0.00 4.94
5049 7735 4.900704 CATGGGGGCCGACATGGG 62.901 72.222 24.25 7.19 40.50 4.00
5050 7736 4.127744 ACATGGGGGCCGACATGG 62.128 66.667 30.76 18.98 46.60 3.66
5052 7738 2.386100 ATGACATGGGGGCCGACAT 61.386 57.895 6.53 6.53 0.00 3.06
5053 7739 3.014538 ATGACATGGGGGCCGACA 61.015 61.111 0.00 0.00 0.00 4.35
5054 7740 2.516930 CATGACATGGGGGCCGAC 60.517 66.667 7.60 0.00 0.00 4.79
5055 7741 2.690510 TCATGACATGGGGGCCGA 60.691 61.111 15.37 0.00 0.00 5.54
5104 7790 3.432051 ATACTGGACGAGCGCTGCC 62.432 63.158 18.48 14.53 0.00 4.85
5105 7791 2.105128 ATACTGGACGAGCGCTGC 59.895 61.111 18.48 5.60 0.00 5.25
5106 7792 1.589993 CCATACTGGACGAGCGCTG 60.590 63.158 18.48 10.31 40.96 5.18
5107 7793 2.786495 CCCATACTGGACGAGCGCT 61.786 63.158 11.27 11.27 40.96 5.92
5108 7794 2.279517 CCCATACTGGACGAGCGC 60.280 66.667 0.00 0.00 40.96 5.92
5109 7795 2.417516 CCCCATACTGGACGAGCG 59.582 66.667 0.00 0.00 40.96 5.03
5110 7796 2.822399 CCCCCATACTGGACGAGC 59.178 66.667 0.00 0.00 40.96 5.03
5128 7814 4.520846 CACCGCCGCGCTCAATTC 62.521 66.667 7.42 0.00 0.00 2.17
5154 7840 3.721706 CACCTCCACCCTCCCTGC 61.722 72.222 0.00 0.00 0.00 4.85
5155 7841 3.011517 CCACCTCCACCCTCCCTG 61.012 72.222 0.00 0.00 0.00 4.45
5158 7844 3.403558 GAGCCACCTCCACCCTCC 61.404 72.222 0.00 0.00 31.68 4.30
5159 7845 3.775654 CGAGCCACCTCCACCCTC 61.776 72.222 0.00 0.00 34.49 4.30
5163 7849 4.767255 CAGGCGAGCCACCTCCAC 62.767 72.222 17.18 0.00 34.42 4.02
5166 7852 4.828925 GAGCAGGCGAGCCACCTC 62.829 72.222 17.18 15.83 34.42 3.85
5168 7854 3.909086 AAAGAGCAGGCGAGCCACC 62.909 63.158 17.18 6.41 38.92 4.61
5169 7855 1.916697 GAAAAGAGCAGGCGAGCCAC 61.917 60.000 17.18 7.93 38.92 5.01
5170 7856 1.672356 GAAAAGAGCAGGCGAGCCA 60.672 57.895 17.18 0.00 38.92 4.75
5171 7857 2.402572 GGAAAAGAGCAGGCGAGCC 61.403 63.158 5.89 5.89 34.23 4.70
5172 7858 1.642952 CTGGAAAAGAGCAGGCGAGC 61.643 60.000 0.00 0.00 0.00 5.03
5173 7859 1.642952 GCTGGAAAAGAGCAGGCGAG 61.643 60.000 0.00 0.00 36.40 5.03
5174 7860 1.672356 GCTGGAAAAGAGCAGGCGA 60.672 57.895 0.00 0.00 36.40 5.54
5175 7861 2.873288 GCTGGAAAAGAGCAGGCG 59.127 61.111 0.00 0.00 36.40 5.52
5176 7862 1.968540 ACGCTGGAAAAGAGCAGGC 60.969 57.895 0.00 0.00 36.12 4.85
5177 7863 0.886490 ACACGCTGGAAAAGAGCAGG 60.886 55.000 0.00 0.00 36.12 4.85
5178 7864 0.236711 CACACGCTGGAAAAGAGCAG 59.763 55.000 0.00 0.00 36.12 4.24
5179 7865 1.165907 CCACACGCTGGAAAAGAGCA 61.166 55.000 0.00 0.00 43.95 4.26
5180 7866 1.576421 CCACACGCTGGAAAAGAGC 59.424 57.895 0.00 0.00 43.95 4.09
5181 7867 1.576421 GCCACACGCTGGAAAAGAG 59.424 57.895 3.87 0.00 43.95 2.85
5182 7868 1.896660 GGCCACACGCTGGAAAAGA 60.897 57.895 0.00 0.00 43.95 2.52
5183 7869 1.898574 AGGCCACACGCTGGAAAAG 60.899 57.895 5.01 0.00 43.95 2.27
5184 7870 2.192861 CAGGCCACACGCTGGAAAA 61.193 57.895 5.01 0.00 43.95 2.29
5185 7871 2.594303 CAGGCCACACGCTGGAAA 60.594 61.111 5.01 0.00 43.95 3.13
5186 7872 4.641645 CCAGGCCACACGCTGGAA 62.642 66.667 5.01 0.00 43.95 3.53
5192 7878 4.704833 CTCCCACCAGGCCACACG 62.705 72.222 5.01 0.00 34.51 4.49
5193 7879 3.249189 TCTCCCACCAGGCCACAC 61.249 66.667 5.01 0.00 34.51 3.82
5194 7880 3.249189 GTCTCCCACCAGGCCACA 61.249 66.667 5.01 0.00 34.51 4.17
5195 7881 3.249189 TGTCTCCCACCAGGCCAC 61.249 66.667 5.01 0.00 34.51 5.01
5196 7882 2.930019 CTGTCTCCCACCAGGCCA 60.930 66.667 5.01 0.00 34.51 5.36
5197 7883 2.607750 TCTGTCTCCCACCAGGCC 60.608 66.667 0.00 0.00 34.51 5.19
5198 7884 1.610673 TCTCTGTCTCCCACCAGGC 60.611 63.158 0.00 0.00 34.51 4.85
5199 7885 1.599606 CGTCTCTGTCTCCCACCAGG 61.600 65.000 0.00 0.00 0.00 4.45
5200 7886 0.609406 TCGTCTCTGTCTCCCACCAG 60.609 60.000 0.00 0.00 0.00 4.00
5201 7887 0.609406 CTCGTCTCTGTCTCCCACCA 60.609 60.000 0.00 0.00 0.00 4.17
5202 7888 1.316706 CCTCGTCTCTGTCTCCCACC 61.317 65.000 0.00 0.00 0.00 4.61
5203 7889 1.939769 GCCTCGTCTCTGTCTCCCAC 61.940 65.000 0.00 0.00 0.00 4.61
5204 7890 1.679305 GCCTCGTCTCTGTCTCCCA 60.679 63.158 0.00 0.00 0.00 4.37
5205 7891 1.662438 CTGCCTCGTCTCTGTCTCCC 61.662 65.000 0.00 0.00 0.00 4.30
5206 7892 0.678366 TCTGCCTCGTCTCTGTCTCC 60.678 60.000 0.00 0.00 0.00 3.71
5207 7893 0.732571 CTCTGCCTCGTCTCTGTCTC 59.267 60.000 0.00 0.00 0.00 3.36
5208 7894 0.326595 TCTCTGCCTCGTCTCTGTCT 59.673 55.000 0.00 0.00 0.00 3.41
5209 7895 0.732571 CTCTCTGCCTCGTCTCTGTC 59.267 60.000 0.00 0.00 0.00 3.51
5210 7896 0.679640 CCTCTCTGCCTCGTCTCTGT 60.680 60.000 0.00 0.00 0.00 3.41
5211 7897 1.383456 CCCTCTCTGCCTCGTCTCTG 61.383 65.000 0.00 0.00 0.00 3.35
5212 7898 1.077068 CCCTCTCTGCCTCGTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
5213 7899 1.077357 TCCCTCTCTGCCTCGTCTC 60.077 63.158 0.00 0.00 0.00 3.36
5214 7900 1.077068 CTCCCTCTCTGCCTCGTCT 60.077 63.158 0.00 0.00 0.00 4.18
5215 7901 2.124693 CCTCCCTCTCTGCCTCGTC 61.125 68.421 0.00 0.00 0.00 4.20
5216 7902 2.043450 CCTCCCTCTCTGCCTCGT 60.043 66.667 0.00 0.00 0.00 4.18
5217 7903 2.837291 CCCTCCCTCTCTGCCTCG 60.837 72.222 0.00 0.00 0.00 4.63
5218 7904 1.760480 GTCCCTCCCTCTCTGCCTC 60.760 68.421 0.00 0.00 0.00 4.70
5219 7905 2.366570 GTCCCTCCCTCTCTGCCT 59.633 66.667 0.00 0.00 0.00 4.75
5220 7906 3.151022 CGTCCCTCCCTCTCTGCC 61.151 72.222 0.00 0.00 0.00 4.85
5221 7907 3.151022 CCGTCCCTCCCTCTCTGC 61.151 72.222 0.00 0.00 0.00 4.26
5222 7908 1.454847 CTCCGTCCCTCCCTCTCTG 60.455 68.421 0.00 0.00 0.00 3.35
5223 7909 2.695970 CCTCCGTCCCTCCCTCTCT 61.696 68.421 0.00 0.00 0.00 3.10
5224 7910 2.123640 CCTCCGTCCCTCCCTCTC 60.124 72.222 0.00 0.00 0.00 3.20
5225 7911 4.467107 GCCTCCGTCCCTCCCTCT 62.467 72.222 0.00 0.00 0.00 3.69
5229 7915 3.839432 CTTCGCCTCCGTCCCTCC 61.839 72.222 0.00 0.00 35.54 4.30
5230 7916 4.516195 GCTTCGCCTCCGTCCCTC 62.516 72.222 0.00 0.00 35.54 4.30
5234 7920 3.346631 TTACCGCTTCGCCTCCGTC 62.347 63.158 0.00 0.00 35.54 4.79
5235 7921 3.352338 CTTACCGCTTCGCCTCCGT 62.352 63.158 0.00 0.00 35.54 4.69
5236 7922 2.582498 CTTACCGCTTCGCCTCCG 60.582 66.667 0.00 0.00 0.00 4.63
5237 7923 2.890961 GCTTACCGCTTCGCCTCC 60.891 66.667 0.00 0.00 35.14 4.30
5238 7924 3.255379 CGCTTACCGCTTCGCCTC 61.255 66.667 0.00 0.00 36.13 4.70
5239 7925 3.584868 AACGCTTACCGCTTCGCCT 62.585 57.895 0.00 0.00 41.76 5.52
5240 7926 3.079941 GAACGCTTACCGCTTCGCC 62.080 63.158 0.00 0.00 41.76 5.54
5241 7927 1.693083 ATGAACGCTTACCGCTTCGC 61.693 55.000 0.00 0.00 41.76 4.70
5242 7928 0.025001 CATGAACGCTTACCGCTTCG 59.975 55.000 0.00 0.00 41.76 3.79
5243 7929 0.373716 CCATGAACGCTTACCGCTTC 59.626 55.000 0.00 0.00 41.76 3.86
5244 7930 0.036765 TCCATGAACGCTTACCGCTT 60.037 50.000 0.00 0.00 41.76 4.68
5245 7931 0.739813 GTCCATGAACGCTTACCGCT 60.740 55.000 0.00 0.00 41.76 5.52
5246 7932 1.713830 GTCCATGAACGCTTACCGC 59.286 57.895 0.00 0.00 41.76 5.68
5247 7933 1.418342 CCGTCCATGAACGCTTACCG 61.418 60.000 0.00 0.00 41.26 4.02
5248 7934 1.702491 GCCGTCCATGAACGCTTACC 61.702 60.000 0.00 0.00 41.26 2.85
5249 7935 1.713830 GCCGTCCATGAACGCTTAC 59.286 57.895 0.00 0.00 41.26 2.34
5250 7936 1.807981 CGCCGTCCATGAACGCTTA 60.808 57.895 0.00 0.00 41.26 3.09
5251 7937 3.118454 CGCCGTCCATGAACGCTT 61.118 61.111 0.00 0.00 41.26 4.68
5252 7938 3.989698 CTCGCCGTCCATGAACGCT 62.990 63.158 0.00 0.00 41.26 5.07
5253 7939 3.554692 CTCGCCGTCCATGAACGC 61.555 66.667 0.00 0.00 41.26 4.84
5254 7940 2.885644 CCTCGCCGTCCATGAACG 60.886 66.667 0.00 0.00 42.24 3.95
5255 7941 2.100631 CACCTCGCCGTCCATGAAC 61.101 63.158 0.00 0.00 0.00 3.18
5256 7942 2.264480 CACCTCGCCGTCCATGAA 59.736 61.111 0.00 0.00 0.00 2.57
5257 7943 4.451150 GCACCTCGCCGTCCATGA 62.451 66.667 0.00 0.00 32.94 3.07
5268 7954 4.148825 AGATCCACGCCGCACCTC 62.149 66.667 0.00 0.00 0.00 3.85
5269 7955 4.457496 CAGATCCACGCCGCACCT 62.457 66.667 0.00 0.00 0.00 4.00
5275 7961 4.101448 ACTGCCCAGATCCACGCC 62.101 66.667 1.69 0.00 0.00 5.68
5276 7962 2.821366 CACTGCCCAGATCCACGC 60.821 66.667 1.69 0.00 0.00 5.34
5277 7963 2.821366 GCACTGCCCAGATCCACG 60.821 66.667 1.69 0.00 0.00 4.94
5278 7964 2.821366 CGCACTGCCCAGATCCAC 60.821 66.667 1.69 0.00 0.00 4.02
5279 7965 3.002583 TCGCACTGCCCAGATCCA 61.003 61.111 1.69 0.00 0.00 3.41
5280 7966 2.202987 CTCGCACTGCCCAGATCC 60.203 66.667 1.69 0.00 0.00 3.36
5281 7967 2.202987 CCTCGCACTGCCCAGATC 60.203 66.667 1.69 0.00 0.00 2.75
5282 7968 4.479993 GCCTCGCACTGCCCAGAT 62.480 66.667 1.69 0.00 0.00 2.90
5291 7977 4.424711 TTCCCCATGGCCTCGCAC 62.425 66.667 6.09 0.00 0.00 5.34
5292 7978 4.113815 CTTCCCCATGGCCTCGCA 62.114 66.667 6.09 0.00 0.00 5.10
5293 7979 4.883354 CCTTCCCCATGGCCTCGC 62.883 72.222 6.09 0.00 0.00 5.03
5294 7980 3.089874 TCCTTCCCCATGGCCTCG 61.090 66.667 6.09 0.00 0.00 4.63
5295 7981 2.003548 ACTCCTTCCCCATGGCCTC 61.004 63.158 6.09 0.00 0.00 4.70
5296 7982 2.128226 ACTCCTTCCCCATGGCCT 59.872 61.111 6.09 0.00 0.00 5.19
5297 7983 2.276740 CACTCCTTCCCCATGGCC 59.723 66.667 6.09 0.00 0.00 5.36
5298 7984 2.440980 GCACTCCTTCCCCATGGC 60.441 66.667 6.09 0.00 0.00 4.40
5299 7985 1.987807 ATCGCACTCCTTCCCCATGG 61.988 60.000 4.14 4.14 0.00 3.66
5300 7986 0.816825 CATCGCACTCCTTCCCCATG 60.817 60.000 0.00 0.00 0.00 3.66
5301 7987 1.528824 CATCGCACTCCTTCCCCAT 59.471 57.895 0.00 0.00 0.00 4.00
5302 7988 2.669133 CCATCGCACTCCTTCCCCA 61.669 63.158 0.00 0.00 0.00 4.96
5303 7989 2.190578 CCATCGCACTCCTTCCCC 59.809 66.667 0.00 0.00 0.00 4.81
5304 7990 2.190578 CCCATCGCACTCCTTCCC 59.809 66.667 0.00 0.00 0.00 3.97
5305 7991 1.910580 TTCCCCATCGCACTCCTTCC 61.911 60.000 0.00 0.00 0.00 3.46
5306 7992 0.035439 TTTCCCCATCGCACTCCTTC 60.035 55.000 0.00 0.00 0.00 3.46
5307 7993 0.404040 TTTTCCCCATCGCACTCCTT 59.596 50.000 0.00 0.00 0.00 3.36
5308 7994 0.035056 CTTTTCCCCATCGCACTCCT 60.035 55.000 0.00 0.00 0.00 3.69
5309 7995 1.032114 CCTTTTCCCCATCGCACTCC 61.032 60.000 0.00 0.00 0.00 3.85
5310 7996 1.032114 CCCTTTTCCCCATCGCACTC 61.032 60.000 0.00 0.00 0.00 3.51
5311 7997 1.000896 CCCTTTTCCCCATCGCACT 60.001 57.895 0.00 0.00 0.00 4.40
5312 7998 1.001393 TCCCTTTTCCCCATCGCAC 60.001 57.895 0.00 0.00 0.00 5.34
5313 7999 1.302949 CTCCCTTTTCCCCATCGCA 59.697 57.895 0.00 0.00 0.00 5.10
5314 8000 2.121538 GCTCCCTTTTCCCCATCGC 61.122 63.158 0.00 0.00 0.00 4.58
5315 8001 1.819632 CGCTCCCTTTTCCCCATCG 60.820 63.158 0.00 0.00 0.00 3.84
5316 8002 0.748367 GTCGCTCCCTTTTCCCCATC 60.748 60.000 0.00 0.00 0.00 3.51
5317 8003 1.303282 GTCGCTCCCTTTTCCCCAT 59.697 57.895 0.00 0.00 0.00 4.00
5318 8004 2.124507 CTGTCGCTCCCTTTTCCCCA 62.125 60.000 0.00 0.00 0.00 4.96
5319 8005 1.377333 CTGTCGCTCCCTTTTCCCC 60.377 63.158 0.00 0.00 0.00 4.81
5320 8006 2.041115 GCTGTCGCTCCCTTTTCCC 61.041 63.158 0.00 0.00 0.00 3.97
5321 8007 2.391389 CGCTGTCGCTCCCTTTTCC 61.391 63.158 0.00 0.00 0.00 3.13
5322 8008 2.391389 CCGCTGTCGCTCCCTTTTC 61.391 63.158 0.00 0.00 0.00 2.29
5323 8009 2.358737 CCGCTGTCGCTCCCTTTT 60.359 61.111 0.00 0.00 0.00 2.27
5333 8019 4.899239 CTCCCCATCGCCGCTGTC 62.899 72.222 0.00 0.00 0.00 3.51
5335 8021 4.161295 TTCTCCCCATCGCCGCTG 62.161 66.667 0.00 0.00 0.00 5.18
5336 8022 3.854669 CTTCTCCCCATCGCCGCT 61.855 66.667 0.00 0.00 0.00 5.52
5337 8023 4.918201 CCTTCTCCCCATCGCCGC 62.918 72.222 0.00 0.00 0.00 6.53
5338 8024 4.241555 CCCTTCTCCCCATCGCCG 62.242 72.222 0.00 0.00 0.00 6.46
5339 8025 2.768344 TCCCTTCTCCCCATCGCC 60.768 66.667 0.00 0.00 0.00 5.54
5340 8026 2.825264 CTCCCTTCTCCCCATCGC 59.175 66.667 0.00 0.00 0.00 4.58
5341 8027 0.470080 TAGCTCCCTTCTCCCCATCG 60.470 60.000 0.00 0.00 0.00 3.84
5342 8028 1.347062 CTAGCTCCCTTCTCCCCATC 58.653 60.000 0.00 0.00 0.00 3.51
5343 8029 0.104725 CCTAGCTCCCTTCTCCCCAT 60.105 60.000 0.00 0.00 0.00 4.00
5344 8030 1.314867 CCTAGCTCCCTTCTCCCCA 59.685 63.158 0.00 0.00 0.00 4.96
5345 8031 1.460497 CCCTAGCTCCCTTCTCCCC 60.460 68.421 0.00 0.00 0.00 4.81
5346 8032 0.326713 AACCCTAGCTCCCTTCTCCC 60.327 60.000 0.00 0.00 0.00 4.30
5347 8033 1.487142 GAAACCCTAGCTCCCTTCTCC 59.513 57.143 0.00 0.00 0.00 3.71
5348 8034 1.137282 CGAAACCCTAGCTCCCTTCTC 59.863 57.143 0.00 0.00 0.00 2.87
5349 8035 1.196012 CGAAACCCTAGCTCCCTTCT 58.804 55.000 0.00 0.00 0.00 2.85
5350 8036 0.178301 CCGAAACCCTAGCTCCCTTC 59.822 60.000 0.00 0.00 0.00 3.46
5351 8037 1.272554 CCCGAAACCCTAGCTCCCTT 61.273 60.000 0.00 0.00 0.00 3.95
5352 8038 1.689582 CCCGAAACCCTAGCTCCCT 60.690 63.158 0.00 0.00 0.00 4.20
5353 8039 2.743179 CCCCGAAACCCTAGCTCCC 61.743 68.421 0.00 0.00 0.00 4.30
5354 8040 2.743179 CCCCCGAAACCCTAGCTCC 61.743 68.421 0.00 0.00 0.00 4.70
5355 8041 1.993948 ACCCCCGAAACCCTAGCTC 60.994 63.158 0.00 0.00 0.00 4.09
5356 8042 2.124312 ACCCCCGAAACCCTAGCT 59.876 61.111 0.00 0.00 0.00 3.32
5357 8043 2.271173 CACCCCCGAAACCCTAGC 59.729 66.667 0.00 0.00 0.00 3.42
5358 8044 1.614226 TCCACCCCCGAAACCCTAG 60.614 63.158 0.00 0.00 0.00 3.02
5359 8045 1.919816 GTCCACCCCCGAAACCCTA 60.920 63.158 0.00 0.00 0.00 3.53
5360 8046 3.254617 GTCCACCCCCGAAACCCT 61.255 66.667 0.00 0.00 0.00 4.34
5361 8047 4.710167 CGTCCACCCCCGAAACCC 62.710 72.222 0.00 0.00 0.00 4.11
5362 8048 3.600898 CTCGTCCACCCCCGAAACC 62.601 68.421 0.00 0.00 31.92 3.27
5363 8049 2.047560 CTCGTCCACCCCCGAAAC 60.048 66.667 0.00 0.00 31.92 2.78
5364 8050 3.315949 CCTCGTCCACCCCCGAAA 61.316 66.667 0.00 0.00 31.92 3.46
5365 8051 3.612115 ATCCTCGTCCACCCCCGAA 62.612 63.158 0.00 0.00 31.92 4.30
5366 8052 4.070265 ATCCTCGTCCACCCCCGA 62.070 66.667 0.00 0.00 0.00 5.14
5367 8053 3.849951 CATCCTCGTCCACCCCCG 61.850 72.222 0.00 0.00 0.00 5.73
5368 8054 2.365105 TCATCCTCGTCCACCCCC 60.365 66.667 0.00 0.00 0.00 5.40
5369 8055 1.381327 TCTCATCCTCGTCCACCCC 60.381 63.158 0.00 0.00 0.00 4.95
5370 8056 1.395826 CCTCTCATCCTCGTCCACCC 61.396 65.000 0.00 0.00 0.00 4.61
5371 8057 1.395826 CCCTCTCATCCTCGTCCACC 61.396 65.000 0.00 0.00 0.00 4.61
5372 8058 0.395862 TCCCTCTCATCCTCGTCCAC 60.396 60.000 0.00 0.00 0.00 4.02
5373 8059 0.395862 GTCCCTCTCATCCTCGTCCA 60.396 60.000 0.00 0.00 0.00 4.02
5374 8060 0.395862 TGTCCCTCTCATCCTCGTCC 60.396 60.000 0.00 0.00 0.00 4.79
5375 8061 0.741915 GTGTCCCTCTCATCCTCGTC 59.258 60.000 0.00 0.00 0.00 4.20
5376 8062 1.032657 CGTGTCCCTCTCATCCTCGT 61.033 60.000 0.00 0.00 0.00 4.18
5377 8063 1.729470 CCGTGTCCCTCTCATCCTCG 61.729 65.000 0.00 0.00 0.00 4.63
5378 8064 0.684805 ACCGTGTCCCTCTCATCCTC 60.685 60.000 0.00 0.00 0.00 3.71
5379 8065 0.972983 CACCGTGTCCCTCTCATCCT 60.973 60.000 0.00 0.00 0.00 3.24
5380 8066 1.258445 ACACCGTGTCCCTCTCATCC 61.258 60.000 0.00 0.00 0.00 3.51
5381 8067 0.108615 CACACCGTGTCCCTCTCATC 60.109 60.000 0.00 0.00 0.00 2.92
5382 8068 0.541998 TCACACCGTGTCCCTCTCAT 60.542 55.000 0.00 0.00 34.79 2.90
5383 8069 0.541998 ATCACACCGTGTCCCTCTCA 60.542 55.000 0.00 0.00 34.79 3.27
5384 8070 0.608640 AATCACACCGTGTCCCTCTC 59.391 55.000 0.00 0.00 34.79 3.20
5385 8071 0.608640 GAATCACACCGTGTCCCTCT 59.391 55.000 0.00 0.00 34.79 3.69
5386 8072 3.139029 GAATCACACCGTGTCCCTC 57.861 57.895 0.00 0.00 34.79 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.