Multiple sequence alignment - TraesCS2B01G068100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G068100 chr2B 100.000 3303 0 0 1 3303 34577778 34581080 0.000000e+00 6100.0
1 TraesCS2B01G068100 chr2B 93.750 112 6 1 3139 3250 79325240 79325350 2.040000e-37 167.0
2 TraesCS2B01G068100 chr2B 94.118 102 4 1 2964 3065 79325031 79325130 1.590000e-33 154.0
3 TraesCS2B01G068100 chr2B 97.778 45 1 0 2919 2963 772337096 772337052 9.830000e-11 78.7
4 TraesCS2B01G068100 chr2A 91.597 1559 80 28 924 2457 23631996 23630464 0.000000e+00 2106.0
5 TraesCS2B01G068100 chr2A 95.825 479 15 2 2460 2933 23630362 23629884 0.000000e+00 769.0
6 TraesCS2B01G068100 chr2A 88.448 277 29 3 383 656 2393058 2393334 6.830000e-87 331.0
7 TraesCS2B01G068100 chr2A 88.182 220 11 6 680 896 23632965 23632758 7.080000e-62 248.0
8 TraesCS2B01G068100 chr7B 91.077 919 43 8 1535 2417 547273169 547274084 0.000000e+00 1206.0
9 TraesCS2B01G068100 chr7B 94.462 650 31 5 1 647 547271512 547272159 0.000000e+00 996.0
10 TraesCS2B01G068100 chr7B 93.854 602 14 3 939 1534 547272545 547273129 0.000000e+00 885.0
11 TraesCS2B01G068100 chr7B 91.139 237 11 2 2613 2849 547274215 547274441 2.470000e-81 313.0
12 TraesCS2B01G068100 chr7B 87.255 204 8 7 680 882 547272221 547272407 2.000000e-52 217.0
13 TraesCS2B01G068100 chr7B 96.667 60 1 1 2866 2924 547275794 547275853 7.540000e-17 99.0
14 TraesCS2B01G068100 chr4D 94.097 288 14 3 2964 3251 464364820 464365104 5.060000e-118 435.0
15 TraesCS2B01G068100 chr6D 93.772 289 14 4 2964 3251 129164777 129164492 6.550000e-117 431.0
16 TraesCS2B01G068100 chr2D 93.056 288 17 2 2964 3251 511675153 511675437 5.100000e-113 418.0
17 TraesCS2B01G068100 chr7A 88.489 278 28 4 382 656 709594249 709593973 1.900000e-87 333.0
18 TraesCS2B01G068100 chr3B 88.214 280 31 2 379 656 106701441 106701162 1.900000e-87 333.0
19 TraesCS2B01G068100 chr3B 97.778 45 1 0 2919 2963 194756002 194755958 9.830000e-11 78.7
20 TraesCS2B01G068100 chr5A 88.129 278 29 4 386 661 647359554 647359829 8.840000e-86 327.0
21 TraesCS2B01G068100 chr6A 88.278 273 30 2 386 656 181909849 181910121 3.180000e-85 326.0
22 TraesCS2B01G068100 chr6A 97.778 45 1 0 2919 2963 97092703 97092747 9.830000e-11 78.7
23 TraesCS2B01G068100 chr3D 88.321 274 29 3 386 656 12369084 12368811 3.180000e-85 326.0
24 TraesCS2B01G068100 chr3D 95.531 179 5 2 2959 3136 562518739 562518915 1.940000e-72 283.0
25 TraesCS2B01G068100 chr3D 95.238 105 5 0 3147 3251 562519132 562519236 2.040000e-37 167.0
26 TraesCS2B01G068100 chr1B 88.278 273 30 2 386 656 592409009 592409281 3.180000e-85 326.0
27 TraesCS2B01G068100 chrUn 87.500 280 33 2 379 656 379959192 379959471 4.110000e-84 322.0
28 TraesCS2B01G068100 chr4A 91.429 70 1 4 2964 3030 744439735 744439802 1.260000e-14 91.6
29 TraesCS2B01G068100 chr1D 100.000 45 0 0 2919 2963 70893269 70893313 2.110000e-12 84.2
30 TraesCS2B01G068100 chr1D 97.778 45 1 0 2919 2963 87837138 87837094 9.830000e-11 78.7
31 TraesCS2B01G068100 chr1D 97.778 45 1 0 2919 2963 411749289 411749245 9.830000e-11 78.7
32 TraesCS2B01G068100 chr7D 97.778 45 1 0 2919 2963 538520691 538520647 9.830000e-11 78.7
33 TraesCS2B01G068100 chr5D 97.778 45 1 0 2919 2963 421982426 421982470 9.830000e-11 78.7
34 TraesCS2B01G068100 chr1A 97.778 45 1 0 2919 2963 3123990 3123946 9.830000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G068100 chr2B 34577778 34581080 3302 False 6100.000000 6100 100.000 1 3303 1 chr2B.!!$F1 3302
1 TraesCS2B01G068100 chr2A 23629884 23632965 3081 True 1041.000000 2106 91.868 680 2933 3 chr2A.!!$R1 2253
2 TraesCS2B01G068100 chr7B 547271512 547275853 4341 False 619.333333 1206 92.409 1 2924 6 chr7B.!!$F1 2923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 584 0.027194 CCACTGAAAGCGCATCATCG 59.973 55.0 11.47 5.58 37.6 3.84 F
637 640 0.798776 CATGACTTGAACCCTCGTGC 59.201 55.0 0.00 0.00 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2160 3097 1.062587 GCCATTCACGACTGCACATAC 59.937 52.381 0.00 0.0 0.0 2.39 R
2379 3317 3.390311 GGAGTCAAACCCGGATAATAGGT 59.610 47.826 0.73 0.0 34.6 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
379 381 3.627395 ATTACTTGCGGTGAATCCTGA 57.373 42.857 0.00 0.00 0.00 3.86
425 428 5.281376 GCAAATGCAAGCGTTCATATATACG 59.719 40.000 0.00 4.05 41.59 3.06
468 471 0.676782 GCACACACCCACATCCTACC 60.677 60.000 0.00 0.00 0.00 3.18
480 483 3.046374 ACATCCTACCCCTATGAACACC 58.954 50.000 0.00 0.00 0.00 4.16
490 493 3.639094 CCCTATGAACACCTTCGAGAGAT 59.361 47.826 0.00 0.00 41.60 2.75
507 510 2.935201 GAGATTGAGCCGGCATATCATC 59.065 50.000 31.54 20.52 0.00 2.92
551 554 4.570663 GCCTCATCGTCGACGGGG 62.571 72.222 35.05 28.65 40.29 5.73
581 584 0.027194 CCACTGAAAGCGCATCATCG 59.973 55.000 11.47 5.58 37.60 3.84
582 585 1.001624 CACTGAAAGCGCATCATCGA 58.998 50.000 11.47 0.00 37.60 3.59
590 593 3.329743 AGCGCATCATCGAAAATTCTG 57.670 42.857 11.47 0.00 0.00 3.02
634 637 1.442769 CACCATGACTTGAACCCTCG 58.557 55.000 0.00 0.00 0.00 4.63
637 640 0.798776 CATGACTTGAACCCTCGTGC 59.201 55.000 0.00 0.00 0.00 5.34
642 645 4.680237 TGAACCCTCGTGCGCTGG 62.680 66.667 9.73 5.63 0.00 4.85
646 649 3.536917 CCCTCGTGCGCTGGGATA 61.537 66.667 17.16 0.00 43.47 2.59
647 650 2.279517 CCTCGTGCGCTGGGATAC 60.280 66.667 9.73 0.00 0.00 2.24
662 695 3.199880 GGATACCACTGTCCCATCTTG 57.800 52.381 0.00 0.00 0.00 3.02
667 700 4.118168 ACCACTGTCCCATCTTGAAAAT 57.882 40.909 0.00 0.00 0.00 1.82
668 701 3.828451 ACCACTGTCCCATCTTGAAAATG 59.172 43.478 0.00 0.00 0.00 2.32
673 706 7.255381 CCACTGTCCCATCTTGAAAATGATATC 60.255 40.741 0.00 0.00 0.00 1.63
675 708 6.591001 TGTCCCATCTTGAAAATGATATCGA 58.409 36.000 0.00 0.00 0.00 3.59
677 710 7.720957 TGTCCCATCTTGAAAATGATATCGATT 59.279 33.333 1.71 0.00 0.00 3.34
678 711 8.019669 GTCCCATCTTGAAAATGATATCGATTG 58.980 37.037 1.71 0.00 0.00 2.67
767 800 4.396668 CGTTTTGCGTGTGTAGTTTTTC 57.603 40.909 0.00 0.00 35.54 2.29
768 801 4.092816 CGTTTTGCGTGTGTAGTTTTTCT 58.907 39.130 0.00 0.00 35.54 2.52
769 802 4.555747 CGTTTTGCGTGTGTAGTTTTTCTT 59.444 37.500 0.00 0.00 35.54 2.52
770 803 5.275096 CGTTTTGCGTGTGTAGTTTTTCTTC 60.275 40.000 0.00 0.00 35.54 2.87
771 804 5.554822 TTTGCGTGTGTAGTTTTTCTTCT 57.445 34.783 0.00 0.00 0.00 2.85
869 906 1.202830 AGTTATGTTGGTGGCGGAACA 60.203 47.619 0.00 0.00 36.54 3.18
878 915 2.288025 TGGCGGAACAGGACCTACC 61.288 63.158 0.00 0.00 39.35 3.18
935 1752 4.994756 CCCGTGCCCCTTTTGCCT 62.995 66.667 0.00 0.00 0.00 4.75
1174 1999 6.014584 TCTGCTTGGATGTTCTACAAGTTAGA 60.015 38.462 0.00 0.00 42.60 2.10
1175 2000 6.711277 TGCTTGGATGTTCTACAAGTTAGAT 58.289 36.000 0.00 0.00 42.60 1.98
1176 2001 6.818644 TGCTTGGATGTTCTACAAGTTAGATC 59.181 38.462 0.00 0.00 42.60 2.75
1282 2107 2.747446 ACCGCGATTTTGCTAGTTTCAT 59.253 40.909 8.23 0.00 0.00 2.57
1283 2108 3.936453 ACCGCGATTTTGCTAGTTTCATA 59.064 39.130 8.23 0.00 0.00 2.15
1284 2109 4.393680 ACCGCGATTTTGCTAGTTTCATAA 59.606 37.500 8.23 0.00 0.00 1.90
1285 2110 5.106475 ACCGCGATTTTGCTAGTTTCATAAA 60.106 36.000 8.23 0.00 0.00 1.40
1286 2111 5.971202 CCGCGATTTTGCTAGTTTCATAAAT 59.029 36.000 8.23 0.00 0.00 1.40
1287 2112 6.140737 CCGCGATTTTGCTAGTTTCATAAATC 59.859 38.462 8.23 0.00 0.00 2.17
1288 2113 6.686679 CGCGATTTTGCTAGTTTCATAAATCA 59.313 34.615 0.00 0.00 33.69 2.57
1289 2114 7.097289 CGCGATTTTGCTAGTTTCATAAATCAG 60.097 37.037 0.00 0.00 33.69 2.90
1290 2115 7.698130 GCGATTTTGCTAGTTTCATAAATCAGT 59.302 33.333 0.00 0.00 33.69 3.41
1291 2116 9.214953 CGATTTTGCTAGTTTCATAAATCAGTC 57.785 33.333 0.00 0.00 33.69 3.51
1295 2120 8.791327 TTGCTAGTTTCATAAATCAGTCATCA 57.209 30.769 0.00 0.00 0.00 3.07
1527 2393 4.675408 CGATTTTGCTCTTTTCCCCTTAGC 60.675 45.833 0.00 0.00 0.00 3.09
1796 2707 7.435068 TGCACTTTAACATTAGGAAGAAGAC 57.565 36.000 0.00 0.00 0.00 3.01
1866 2777 2.727798 CGCAATGAAGCAAGTTTTGAGG 59.272 45.455 0.00 0.00 0.00 3.86
1883 2794 3.870274 TGAGGAGAGCATGAAGAATGTG 58.130 45.455 0.00 0.00 38.65 3.21
2160 3097 7.611855 ACTTTTCCTCTAACATAATCACCCTTG 59.388 37.037 0.00 0.00 0.00 3.61
2202 3139 4.775236 CCTGATCCTCGAGAAAATTTCCT 58.225 43.478 15.71 0.00 0.00 3.36
2379 3317 5.509163 CGAGGCTTTAGGCATTAAGTAGCTA 60.509 44.000 6.07 0.00 44.01 3.32
2380 3318 5.612351 AGGCTTTAGGCATTAAGTAGCTAC 58.388 41.667 16.43 16.43 44.01 3.58
2457 3402 6.537301 TCAACGTTCCAGGCATTATTAAGTAG 59.463 38.462 0.00 0.00 0.00 2.57
2469 3513 6.602009 GCATTATTAAGTAGTGGGTTTGACCT 59.398 38.462 0.00 0.00 38.64 3.85
2506 3550 6.374333 TGAACTTGTCCAAGCTATAATGGTTC 59.626 38.462 6.94 5.89 41.99 3.62
2553 3599 5.423704 TGTATTATCCGGGTTTGACTTCA 57.576 39.130 0.00 0.00 0.00 3.02
2555 3601 5.820423 TGTATTATCCGGGTTTGACTTCATG 59.180 40.000 0.00 0.00 0.00 3.07
2784 3920 2.975851 CGTTTTCAGCAGCTCATTCAAC 59.024 45.455 0.00 0.00 0.00 3.18
2853 3989 0.251341 ATTGGCGCCCAGTCTTTTCT 60.251 50.000 26.77 0.00 33.81 2.52
2933 5405 8.276453 ACTTGCACCCCTCTAATATAAACTAT 57.724 34.615 0.00 0.00 0.00 2.12
2934 5406 9.388672 ACTTGCACCCCTCTAATATAAACTATA 57.611 33.333 0.00 0.00 0.00 1.31
2961 5433 8.943909 AACACAAAAATTATACCGTTTGGAAA 57.056 26.923 3.75 0.00 39.21 3.13
2962 5434 9.549078 AACACAAAAATTATACCGTTTGGAAAT 57.451 25.926 3.75 0.00 39.21 2.17
2963 5435 9.198837 ACACAAAAATTATACCGTTTGGAAATC 57.801 29.630 3.75 0.00 39.21 2.17
2964 5436 8.369588 CACAAAAATTATACCGTTTGGAAATCG 58.630 33.333 3.75 0.00 38.66 3.34
2981 5453 1.971481 TCGGAATCGATAACTCCCGA 58.029 50.000 16.40 16.40 42.92 5.14
2982 5454 2.300433 TCGGAATCGATAACTCCCGAA 58.700 47.619 17.39 7.01 42.31 4.30
2983 5455 2.033801 TCGGAATCGATAACTCCCGAAC 59.966 50.000 17.39 0.00 42.31 3.95
2984 5456 2.391879 GGAATCGATAACTCCCGAACG 58.608 52.381 0.00 0.00 38.36 3.95
2985 5457 1.785430 GAATCGATAACTCCCGAACGC 59.215 52.381 0.00 0.00 38.36 4.84
2986 5458 0.317603 ATCGATAACTCCCGAACGCG 60.318 55.000 3.53 3.53 38.36 6.01
2987 5459 2.574222 CGATAACTCCCGAACGCGC 61.574 63.158 5.73 0.00 35.83 6.86
2988 5460 2.574222 GATAACTCCCGAACGCGCG 61.574 63.158 30.96 30.96 35.83 6.86
3003 5475 4.226803 GCGCTGCGTTTTGATGTT 57.773 50.000 24.04 0.00 0.00 2.71
3004 5476 2.505447 GCGCTGCGTTTTGATGTTT 58.495 47.368 24.04 0.00 0.00 2.83
3005 5477 0.430858 GCGCTGCGTTTTGATGTTTC 59.569 50.000 24.04 0.00 0.00 2.78
3006 5478 1.052287 CGCTGCGTTTTGATGTTTCC 58.948 50.000 14.93 0.00 0.00 3.13
3007 5479 1.052287 GCTGCGTTTTGATGTTTCCG 58.948 50.000 0.00 0.00 0.00 4.30
3008 5480 1.599419 GCTGCGTTTTGATGTTTCCGT 60.599 47.619 0.00 0.00 0.00 4.69
3009 5481 2.307049 CTGCGTTTTGATGTTTCCGTC 58.693 47.619 0.00 0.00 0.00 4.79
3010 5482 1.002251 TGCGTTTTGATGTTTCCGTCC 60.002 47.619 0.00 0.00 0.00 4.79
3011 5483 1.945207 CGTTTTGATGTTTCCGTCCG 58.055 50.000 0.00 0.00 0.00 4.79
3012 5484 1.527736 CGTTTTGATGTTTCCGTCCGA 59.472 47.619 0.00 0.00 0.00 4.55
3013 5485 2.032722 CGTTTTGATGTTTCCGTCCGAA 60.033 45.455 0.00 0.00 0.00 4.30
3014 5486 3.294102 GTTTTGATGTTTCCGTCCGAAC 58.706 45.455 0.00 0.00 0.00 3.95
3033 5505 3.842923 CCTCCTGCGGCGTCAGAT 61.843 66.667 25.48 0.00 36.19 2.90
3034 5506 2.185350 CTCCTGCGGCGTCAGATT 59.815 61.111 25.48 0.00 36.19 2.40
3035 5507 1.448540 CTCCTGCGGCGTCAGATTT 60.449 57.895 25.48 0.00 36.19 2.17
3036 5508 0.179111 CTCCTGCGGCGTCAGATTTA 60.179 55.000 25.48 11.65 36.19 1.40
3037 5509 0.459585 TCCTGCGGCGTCAGATTTAC 60.460 55.000 25.48 1.15 36.19 2.01
3038 5510 0.739462 CCTGCGGCGTCAGATTTACA 60.739 55.000 25.48 5.56 36.19 2.41
3039 5511 0.647410 CTGCGGCGTCAGATTTACAG 59.353 55.000 21.28 8.00 36.19 2.74
3040 5512 0.037697 TGCGGCGTCAGATTTACAGT 60.038 50.000 9.37 0.00 0.00 3.55
3041 5513 1.202817 TGCGGCGTCAGATTTACAGTA 59.797 47.619 9.37 0.00 0.00 2.74
3042 5514 1.587034 GCGGCGTCAGATTTACAGTAC 59.413 52.381 9.37 0.00 0.00 2.73
3043 5515 1.844357 CGGCGTCAGATTTACAGTACG 59.156 52.381 0.00 0.00 0.00 3.67
3044 5516 2.476686 CGGCGTCAGATTTACAGTACGA 60.477 50.000 0.00 0.00 32.35 3.43
3045 5517 3.504863 GGCGTCAGATTTACAGTACGAA 58.495 45.455 0.00 0.00 32.35 3.85
3046 5518 4.110482 GGCGTCAGATTTACAGTACGAAT 58.890 43.478 0.00 0.00 32.35 3.34
3047 5519 4.206609 GGCGTCAGATTTACAGTACGAATC 59.793 45.833 0.00 0.00 32.35 2.52
3048 5520 5.035443 GCGTCAGATTTACAGTACGAATCT 58.965 41.667 0.00 2.69 39.91 2.40
3049 5521 5.515626 GCGTCAGATTTACAGTACGAATCTT 59.484 40.000 5.16 0.00 37.88 2.40
3050 5522 6.690098 GCGTCAGATTTACAGTACGAATCTTA 59.310 38.462 5.16 0.00 37.88 2.10
3051 5523 7.219535 GCGTCAGATTTACAGTACGAATCTTAA 59.780 37.037 5.16 0.00 37.88 1.85
3052 5524 9.069078 CGTCAGATTTACAGTACGAATCTTAAA 57.931 33.333 5.16 2.08 37.88 1.52
3056 5528 9.245962 AGATTTACAGTACGAATCTTAAATCGG 57.754 33.333 9.06 0.00 43.11 4.18
3057 5529 6.817270 TTACAGTACGAATCTTAAATCGGC 57.183 37.500 9.06 3.29 43.11 5.54
3058 5530 5.007385 ACAGTACGAATCTTAAATCGGCT 57.993 39.130 9.06 4.97 43.11 5.52
3059 5531 4.804139 ACAGTACGAATCTTAAATCGGCTG 59.196 41.667 18.59 18.59 44.22 4.85
3060 5532 4.804139 CAGTACGAATCTTAAATCGGCTGT 59.196 41.667 15.39 0.00 43.11 4.40
3061 5533 4.804139 AGTACGAATCTTAAATCGGCTGTG 59.196 41.667 9.06 0.00 43.11 3.66
3062 5534 3.596214 ACGAATCTTAAATCGGCTGTGT 58.404 40.909 9.06 0.00 43.11 3.72
3063 5535 4.000988 ACGAATCTTAAATCGGCTGTGTT 58.999 39.130 9.06 0.00 43.11 3.32
3064 5536 4.142902 ACGAATCTTAAATCGGCTGTGTTG 60.143 41.667 9.06 0.00 43.11 3.33
3065 5537 4.142902 CGAATCTTAAATCGGCTGTGTTGT 60.143 41.667 0.00 0.00 35.49 3.32
3066 5538 4.946784 ATCTTAAATCGGCTGTGTTGTC 57.053 40.909 0.00 0.00 0.00 3.18
3067 5539 3.734463 TCTTAAATCGGCTGTGTTGTCA 58.266 40.909 0.00 0.00 0.00 3.58
3068 5540 3.496884 TCTTAAATCGGCTGTGTTGTCAC 59.503 43.478 0.00 0.00 44.08 3.67
3069 5541 0.586319 AAATCGGCTGTGTTGTCACG 59.414 50.000 0.00 0.00 46.49 4.35
3070 5542 0.531974 AATCGGCTGTGTTGTCACGT 60.532 50.000 0.00 0.00 46.49 4.49
3071 5543 0.944311 ATCGGCTGTGTTGTCACGTC 60.944 55.000 0.00 0.00 46.49 4.34
3072 5544 1.880796 CGGCTGTGTTGTCACGTCA 60.881 57.895 0.00 0.00 46.49 4.35
3073 5545 1.641677 GGCTGTGTTGTCACGTCAC 59.358 57.895 0.00 0.00 46.49 3.67
3074 5546 1.272715 GCTGTGTTGTCACGTCACG 59.727 57.895 0.00 0.00 46.49 4.35
3075 5547 1.272715 CTGTGTTGTCACGTCACGC 59.727 57.895 0.00 0.00 46.49 5.34
3076 5548 1.417577 CTGTGTTGTCACGTCACGCA 61.418 55.000 0.00 0.00 46.49 5.24
3077 5549 1.014564 TGTGTTGTCACGTCACGCAA 61.015 50.000 0.00 0.00 46.49 4.85
3078 5550 0.095589 GTGTTGTCACGTCACGCAAA 59.904 50.000 0.00 0.00 34.79 3.68
3079 5551 0.796927 TGTTGTCACGTCACGCAAAA 59.203 45.000 0.00 0.00 0.00 2.44
3080 5552 1.197036 TGTTGTCACGTCACGCAAAAA 59.803 42.857 0.00 0.00 0.00 1.94
3094 5566 3.754068 AAAAACTCGTTCGGGCCC 58.246 55.556 13.57 13.57 0.00 5.80
3095 5567 2.255881 AAAAACTCGTTCGGGCCCG 61.256 57.895 39.13 39.13 41.35 6.13
3106 5578 4.231439 GGGCCCGATACCACCGAC 62.231 72.222 5.69 0.00 0.00 4.79
3107 5579 4.231439 GGCCCGATACCACCGACC 62.231 72.222 0.00 0.00 0.00 4.79
3108 5580 4.231439 GCCCGATACCACCGACCC 62.231 72.222 0.00 0.00 0.00 4.46
3109 5581 3.543641 CCCGATACCACCGACCCC 61.544 72.222 0.00 0.00 0.00 4.95
3110 5582 3.908081 CCGATACCACCGACCCCG 61.908 72.222 0.00 0.00 0.00 5.73
3111 5583 2.829914 CGATACCACCGACCCCGA 60.830 66.667 0.00 0.00 38.22 5.14
3112 5584 2.417257 CGATACCACCGACCCCGAA 61.417 63.158 0.00 0.00 38.22 4.30
3113 5585 1.142531 GATACCACCGACCCCGAAC 59.857 63.158 0.00 0.00 38.22 3.95
3114 5586 2.618312 GATACCACCGACCCCGAACG 62.618 65.000 0.00 0.00 38.22 3.95
3120 5592 4.796231 CGACCCCGAACGCCTCAG 62.796 72.222 0.00 0.00 38.22 3.35
3121 5593 3.692406 GACCCCGAACGCCTCAGT 61.692 66.667 0.00 0.00 0.00 3.41
3122 5594 3.644399 GACCCCGAACGCCTCAGTC 62.644 68.421 0.00 0.00 0.00 3.51
3123 5595 3.382832 CCCCGAACGCCTCAGTCT 61.383 66.667 0.00 0.00 0.00 3.24
3124 5596 2.125912 CCCGAACGCCTCAGTCTG 60.126 66.667 0.00 0.00 0.00 3.51
3125 5597 2.651361 CCGAACGCCTCAGTCTGT 59.349 61.111 0.00 0.00 0.00 3.41
3126 5598 1.444553 CCGAACGCCTCAGTCTGTC 60.445 63.158 0.00 0.00 0.00 3.51
3127 5599 1.581954 CGAACGCCTCAGTCTGTCT 59.418 57.895 0.00 0.00 0.00 3.41
3128 5600 0.455295 CGAACGCCTCAGTCTGTCTC 60.455 60.000 0.00 0.00 0.00 3.36
3129 5601 0.885196 GAACGCCTCAGTCTGTCTCT 59.115 55.000 0.00 0.00 0.00 3.10
3130 5602 0.885196 AACGCCTCAGTCTGTCTCTC 59.115 55.000 0.00 0.00 0.00 3.20
3131 5603 0.037590 ACGCCTCAGTCTGTCTCTCT 59.962 55.000 0.00 0.00 0.00 3.10
3132 5604 0.732571 CGCCTCAGTCTGTCTCTCTC 59.267 60.000 0.00 0.00 0.00 3.20
3133 5605 1.678728 CGCCTCAGTCTGTCTCTCTCT 60.679 57.143 0.00 0.00 0.00 3.10
3134 5606 2.017049 GCCTCAGTCTGTCTCTCTCTC 58.983 57.143 0.00 0.00 0.00 3.20
3135 5607 2.356125 GCCTCAGTCTGTCTCTCTCTCT 60.356 54.545 0.00 0.00 0.00 3.10
3136 5608 3.873801 GCCTCAGTCTGTCTCTCTCTCTT 60.874 52.174 0.00 0.00 0.00 2.85
3137 5609 4.625324 GCCTCAGTCTGTCTCTCTCTCTTA 60.625 50.000 0.00 0.00 0.00 2.10
3138 5610 5.684704 CCTCAGTCTGTCTCTCTCTCTTAT 58.315 45.833 0.00 0.00 0.00 1.73
3139 5611 5.760253 CCTCAGTCTGTCTCTCTCTCTTATC 59.240 48.000 0.00 0.00 0.00 1.75
3140 5612 5.680619 TCAGTCTGTCTCTCTCTCTTATCC 58.319 45.833 0.00 0.00 0.00 2.59
3141 5613 5.428457 TCAGTCTGTCTCTCTCTCTTATCCT 59.572 44.000 0.00 0.00 0.00 3.24
3142 5614 6.069673 TCAGTCTGTCTCTCTCTCTTATCCTT 60.070 42.308 0.00 0.00 0.00 3.36
3143 5615 6.603201 CAGTCTGTCTCTCTCTCTTATCCTTT 59.397 42.308 0.00 0.00 0.00 3.11
3144 5616 7.122650 CAGTCTGTCTCTCTCTCTTATCCTTTT 59.877 40.741 0.00 0.00 0.00 2.27
3145 5617 7.339466 AGTCTGTCTCTCTCTCTTATCCTTTTC 59.661 40.741 0.00 0.00 0.00 2.29
3146 5618 6.605594 TCTGTCTCTCTCTCTTATCCTTTTCC 59.394 42.308 0.00 0.00 0.00 3.13
3147 5619 5.659079 TGTCTCTCTCTCTTATCCTTTTCCC 59.341 44.000 0.00 0.00 0.00 3.97
3148 5620 5.069914 GTCTCTCTCTCTTATCCTTTTCCCC 59.930 48.000 0.00 0.00 0.00 4.81
3149 5621 4.960332 TCTCTCTCTTATCCTTTTCCCCA 58.040 43.478 0.00 0.00 0.00 4.96
3150 5622 5.350547 TCTCTCTCTTATCCTTTTCCCCAA 58.649 41.667 0.00 0.00 0.00 4.12
3151 5623 5.189934 TCTCTCTCTTATCCTTTTCCCCAAC 59.810 44.000 0.00 0.00 0.00 3.77
3152 5624 4.227527 TCTCTCTTATCCTTTTCCCCAACC 59.772 45.833 0.00 0.00 0.00 3.77
3153 5625 3.920197 TCTCTTATCCTTTTCCCCAACCA 59.080 43.478 0.00 0.00 0.00 3.67
3154 5626 4.017126 CTCTTATCCTTTTCCCCAACCAC 58.983 47.826 0.00 0.00 0.00 4.16
3155 5627 3.399644 TCTTATCCTTTTCCCCAACCACA 59.600 43.478 0.00 0.00 0.00 4.17
3156 5628 2.009681 ATCCTTTTCCCCAACCACAC 57.990 50.000 0.00 0.00 0.00 3.82
3157 5629 0.105913 TCCTTTTCCCCAACCACACC 60.106 55.000 0.00 0.00 0.00 4.16
3158 5630 0.105709 CCTTTTCCCCAACCACACCT 60.106 55.000 0.00 0.00 0.00 4.00
3159 5631 1.328279 CTTTTCCCCAACCACACCTC 58.672 55.000 0.00 0.00 0.00 3.85
3160 5632 0.930726 TTTTCCCCAACCACACCTCT 59.069 50.000 0.00 0.00 0.00 3.69
3161 5633 0.184933 TTTCCCCAACCACACCTCTG 59.815 55.000 0.00 0.00 0.00 3.35
3162 5634 2.282462 CCCCAACCACACCTCTGC 60.282 66.667 0.00 0.00 0.00 4.26
3163 5635 2.833913 CCCCAACCACACCTCTGCT 61.834 63.158 0.00 0.00 0.00 4.24
3164 5636 1.302832 CCCAACCACACCTCTGCTC 60.303 63.158 0.00 0.00 0.00 4.26
3165 5637 1.451504 CCAACCACACCTCTGCTCA 59.548 57.895 0.00 0.00 0.00 4.26
3166 5638 0.886490 CCAACCACACCTCTGCTCAC 60.886 60.000 0.00 0.00 0.00 3.51
3167 5639 0.107456 CAACCACACCTCTGCTCACT 59.893 55.000 0.00 0.00 0.00 3.41
3168 5640 0.839946 AACCACACCTCTGCTCACTT 59.160 50.000 0.00 0.00 0.00 3.16
3169 5641 0.839946 ACCACACCTCTGCTCACTTT 59.160 50.000 0.00 0.00 0.00 2.66
3170 5642 1.233019 CCACACCTCTGCTCACTTTG 58.767 55.000 0.00 0.00 0.00 2.77
3171 5643 0.590195 CACACCTCTGCTCACTTTGC 59.410 55.000 0.00 0.00 0.00 3.68
3172 5644 0.471617 ACACCTCTGCTCACTTTGCT 59.528 50.000 0.00 0.00 0.00 3.91
3173 5645 0.873054 CACCTCTGCTCACTTTGCTG 59.127 55.000 0.00 0.00 0.00 4.41
3174 5646 0.888285 ACCTCTGCTCACTTTGCTGC 60.888 55.000 0.00 0.00 0.00 5.25
3175 5647 0.887836 CCTCTGCTCACTTTGCTGCA 60.888 55.000 0.00 0.00 0.00 4.41
3176 5648 0.237761 CTCTGCTCACTTTGCTGCAC 59.762 55.000 0.00 0.00 0.00 4.57
3177 5649 0.464193 TCTGCTCACTTTGCTGCACA 60.464 50.000 0.00 0.00 0.00 4.57
3178 5650 0.596577 CTGCTCACTTTGCTGCACAT 59.403 50.000 0.00 0.00 0.00 3.21
3179 5651 1.000607 CTGCTCACTTTGCTGCACATT 60.001 47.619 0.00 0.00 0.00 2.71
3180 5652 1.001048 TGCTCACTTTGCTGCACATTC 60.001 47.619 0.00 0.00 0.00 2.67
3181 5653 1.268899 GCTCACTTTGCTGCACATTCT 59.731 47.619 0.00 0.00 0.00 2.40
3182 5654 2.667724 GCTCACTTTGCTGCACATTCTC 60.668 50.000 0.00 0.00 0.00 2.87
3183 5655 1.532437 TCACTTTGCTGCACATTCTCG 59.468 47.619 0.00 0.00 0.00 4.04
3184 5656 0.239347 ACTTTGCTGCACATTCTCGC 59.761 50.000 0.00 0.00 0.00 5.03
3185 5657 0.455633 CTTTGCTGCACATTCTCGCC 60.456 55.000 0.00 0.00 0.00 5.54
3186 5658 1.171549 TTTGCTGCACATTCTCGCCA 61.172 50.000 0.00 0.00 0.00 5.69
3187 5659 1.855213 TTGCTGCACATTCTCGCCAC 61.855 55.000 0.00 0.00 0.00 5.01
3188 5660 3.044059 GCTGCACATTCTCGCCACC 62.044 63.158 0.00 0.00 0.00 4.61
3189 5661 1.672030 CTGCACATTCTCGCCACCA 60.672 57.895 0.00 0.00 0.00 4.17
3190 5662 1.002257 TGCACATTCTCGCCACCAT 60.002 52.632 0.00 0.00 0.00 3.55
3191 5663 1.026182 TGCACATTCTCGCCACCATC 61.026 55.000 0.00 0.00 0.00 3.51
3192 5664 2.009108 CACATTCTCGCCACCATCG 58.991 57.895 0.00 0.00 0.00 3.84
3193 5665 1.815421 ACATTCTCGCCACCATCGC 60.815 57.895 0.00 0.00 0.00 4.58
3194 5666 2.203070 ATTCTCGCCACCATCGCC 60.203 61.111 0.00 0.00 0.00 5.54
3195 5667 3.030168 ATTCTCGCCACCATCGCCA 62.030 57.895 0.00 0.00 0.00 5.69
3196 5668 2.535485 ATTCTCGCCACCATCGCCAA 62.535 55.000 0.00 0.00 0.00 4.52
3197 5669 3.499737 CTCGCCACCATCGCCAAC 61.500 66.667 0.00 0.00 0.00 3.77
3198 5670 4.321966 TCGCCACCATCGCCAACA 62.322 61.111 0.00 0.00 0.00 3.33
3199 5671 3.133464 CGCCACCATCGCCAACAT 61.133 61.111 0.00 0.00 0.00 2.71
3200 5672 2.800736 GCCACCATCGCCAACATC 59.199 61.111 0.00 0.00 0.00 3.06
3201 5673 3.101209 CCACCATCGCCAACATCG 58.899 61.111 0.00 0.00 0.00 3.84
3202 5674 1.449423 CCACCATCGCCAACATCGA 60.449 57.895 0.00 0.00 40.45 3.59
3203 5675 1.705337 CCACCATCGCCAACATCGAC 61.705 60.000 0.00 0.00 38.88 4.20
3204 5676 1.449601 ACCATCGCCAACATCGACC 60.450 57.895 0.00 0.00 38.88 4.79
3205 5677 2.525248 CCATCGCCAACATCGACCG 61.525 63.158 0.00 0.00 38.88 4.79
3206 5678 2.890474 ATCGCCAACATCGACCGC 60.890 61.111 0.00 0.00 38.88 5.68
3207 5679 3.657448 ATCGCCAACATCGACCGCA 62.657 57.895 0.00 0.00 38.88 5.69
3208 5680 3.853330 CGCCAACATCGACCGCAG 61.853 66.667 0.00 0.00 0.00 5.18
3209 5681 2.434185 GCCAACATCGACCGCAGA 60.434 61.111 0.00 0.00 0.00 4.26
3210 5682 1.815421 GCCAACATCGACCGCAGAT 60.815 57.895 0.00 0.00 0.00 2.90
3211 5683 1.766143 GCCAACATCGACCGCAGATC 61.766 60.000 0.00 0.00 0.00 2.75
3212 5684 0.460109 CCAACATCGACCGCAGATCA 60.460 55.000 0.00 0.00 0.00 2.92
3213 5685 0.926155 CAACATCGACCGCAGATCAG 59.074 55.000 0.00 0.00 0.00 2.90
3214 5686 0.807667 AACATCGACCGCAGATCAGC 60.808 55.000 0.00 0.00 0.00 4.26
3215 5687 1.067084 CATCGACCGCAGATCAGCT 59.933 57.895 8.57 0.00 0.00 4.24
3216 5688 0.938637 CATCGACCGCAGATCAGCTC 60.939 60.000 8.57 0.00 0.00 4.09
3217 5689 2.081425 ATCGACCGCAGATCAGCTCC 62.081 60.000 8.57 0.00 0.00 4.70
3218 5690 2.107953 GACCGCAGATCAGCTCCC 59.892 66.667 8.57 0.00 0.00 4.30
3219 5691 3.781770 GACCGCAGATCAGCTCCCG 62.782 68.421 8.57 0.00 0.00 5.14
3222 5694 4.925861 GCAGATCAGCTCCCGCCC 62.926 72.222 2.32 0.00 36.60 6.13
3223 5695 4.598894 CAGATCAGCTCCCGCCCG 62.599 72.222 0.00 0.00 36.60 6.13
3224 5696 4.841617 AGATCAGCTCCCGCCCGA 62.842 66.667 0.00 0.00 36.60 5.14
3225 5697 4.593864 GATCAGCTCCCGCCCGAC 62.594 72.222 0.00 0.00 36.60 4.79
3255 5727 4.925307 CGCGCGCATCGACCATTG 62.925 66.667 32.61 6.38 41.67 2.82
3256 5728 4.596180 GCGCGCATCGACCATTGG 62.596 66.667 29.10 0.00 41.67 3.16
3257 5729 3.195002 CGCGCATCGACCATTGGT 61.195 61.111 8.42 8.42 41.67 3.67
3258 5730 2.404789 GCGCATCGACCATTGGTG 59.595 61.111 14.44 6.02 35.25 4.17
3259 5731 2.404789 CGCATCGACCATTGGTGC 59.595 61.111 14.44 9.48 35.25 5.01
3260 5732 2.404789 GCATCGACCATTGGTGCG 59.595 61.111 14.44 15.84 35.25 5.34
3261 5733 3.101209 CATCGACCATTGGTGCGG 58.899 61.111 14.44 2.39 35.25 5.69
3262 5734 2.124736 ATCGACCATTGGTGCGGG 60.125 61.111 14.44 0.00 35.25 6.13
3265 5737 3.443045 GACCATTGGTGCGGGCAG 61.443 66.667 14.44 0.00 35.25 4.85
3266 5738 3.918253 GACCATTGGTGCGGGCAGA 62.918 63.158 14.44 0.00 35.25 4.26
3267 5739 3.136123 CCATTGGTGCGGGCAGAG 61.136 66.667 0.00 0.00 0.00 3.35
3268 5740 2.046023 CATTGGTGCGGGCAGAGA 60.046 61.111 0.00 0.00 0.00 3.10
3269 5741 2.110967 CATTGGTGCGGGCAGAGAG 61.111 63.158 0.00 0.00 0.00 3.20
3270 5742 3.335356 ATTGGTGCGGGCAGAGAGG 62.335 63.158 0.00 0.00 0.00 3.69
3272 5744 4.154347 GGTGCGGGCAGAGAGGAG 62.154 72.222 0.00 0.00 0.00 3.69
3273 5745 4.828925 GTGCGGGCAGAGAGGAGC 62.829 72.222 0.00 0.00 0.00 4.70
3277 5749 4.154347 GGGCAGAGAGGAGCGGTG 62.154 72.222 0.00 0.00 0.00 4.94
3278 5750 3.071206 GGCAGAGAGGAGCGGTGA 61.071 66.667 0.00 0.00 0.00 4.02
3279 5751 2.493973 GCAGAGAGGAGCGGTGAG 59.506 66.667 0.00 0.00 0.00 3.51
3280 5752 2.049185 GCAGAGAGGAGCGGTGAGA 61.049 63.158 0.00 0.00 0.00 3.27
3281 5753 2.003658 GCAGAGAGGAGCGGTGAGAG 62.004 65.000 0.00 0.00 0.00 3.20
3282 5754 1.077068 AGAGAGGAGCGGTGAGAGG 60.077 63.158 0.00 0.00 0.00 3.69
3283 5755 2.043450 AGAGGAGCGGTGAGAGGG 60.043 66.667 0.00 0.00 0.00 4.30
3284 5756 2.043852 GAGGAGCGGTGAGAGGGA 60.044 66.667 0.00 0.00 0.00 4.20
3285 5757 2.043450 AGGAGCGGTGAGAGGGAG 60.043 66.667 0.00 0.00 0.00 4.30
3286 5758 2.043852 GGAGCGGTGAGAGGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
3287 5759 1.456705 GGAGCGGTGAGAGGGAGAT 60.457 63.158 0.00 0.00 0.00 2.75
3288 5760 1.739049 GAGCGGTGAGAGGGAGATG 59.261 63.158 0.00 0.00 0.00 2.90
3289 5761 1.743321 GAGCGGTGAGAGGGAGATGG 61.743 65.000 0.00 0.00 0.00 3.51
3290 5762 2.801631 GCGGTGAGAGGGAGATGGG 61.802 68.421 0.00 0.00 0.00 4.00
3291 5763 2.136878 CGGTGAGAGGGAGATGGGG 61.137 68.421 0.00 0.00 0.00 4.96
3292 5764 1.768077 GGTGAGAGGGAGATGGGGG 60.768 68.421 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 4.096382 ACATTTTCTGAATATGCGGACACC 59.904 41.667 17.21 0.00 0.00 4.16
135 136 9.559958 AAGTTAAGAACATTTTCTGAATATGCG 57.440 29.630 17.21 0.26 41.56 4.73
425 428 2.434336 TCATAGGGGTGAGTGTATGCAC 59.566 50.000 5.71 5.71 45.57 4.57
468 471 3.024547 TCTCTCGAAGGTGTTCATAGGG 58.975 50.000 0.00 0.00 32.36 3.53
480 483 0.873743 GCCGGCTCAATCTCTCGAAG 60.874 60.000 22.15 0.00 0.00 3.79
490 493 2.104622 TCAAGATGATATGCCGGCTCAA 59.895 45.455 29.70 13.42 0.00 3.02
507 510 2.348666 CGGTGGCTTCGTAAATCTCAAG 59.651 50.000 0.00 0.00 0.00 3.02
551 554 1.827399 TTTCAGTGGGAGGAGGCGTC 61.827 60.000 0.00 0.00 0.00 5.19
554 557 1.377856 GCTTTCAGTGGGAGGAGGC 60.378 63.158 0.00 0.00 0.00 4.70
555 558 1.078848 CGCTTTCAGTGGGAGGAGG 60.079 63.158 0.00 0.00 0.00 4.30
590 593 7.487829 TGCTCGCACTATTTTTGGATTTATTTC 59.512 33.333 0.00 0.00 0.00 2.17
599 602 1.539388 TGGTGCTCGCACTATTTTTGG 59.461 47.619 20.05 0.00 45.52 3.28
608 611 0.950555 TCAAGTCATGGTGCTCGCAC 60.951 55.000 13.37 13.37 45.49 5.34
634 637 1.815421 CAGTGGTATCCCAGCGCAC 60.815 63.158 11.47 0.00 42.94 5.34
637 640 1.144057 GGACAGTGGTATCCCAGCG 59.856 63.158 0.00 0.00 42.94 5.18
652 655 7.678947 ATCGATATCATTTTCAAGATGGGAC 57.321 36.000 0.00 0.00 0.00 4.46
655 688 8.102800 TCCAATCGATATCATTTTCAAGATGG 57.897 34.615 0.00 0.00 0.00 3.51
660 693 9.531942 CCAATTTCCAATCGATATCATTTTCAA 57.468 29.630 0.00 0.00 0.00 2.69
662 695 9.185192 GTCCAATTTCCAATCGATATCATTTTC 57.815 33.333 0.00 0.00 0.00 2.29
667 700 6.262944 CCAAGTCCAATTTCCAATCGATATCA 59.737 38.462 0.00 0.00 0.00 2.15
668 701 6.294176 CCCAAGTCCAATTTCCAATCGATATC 60.294 42.308 0.00 0.00 0.00 1.63
673 706 2.825532 ACCCAAGTCCAATTTCCAATCG 59.174 45.455 0.00 0.00 0.00 3.34
675 708 4.040339 GTCAACCCAAGTCCAATTTCCAAT 59.960 41.667 0.00 0.00 0.00 3.16
677 710 2.962421 GTCAACCCAAGTCCAATTTCCA 59.038 45.455 0.00 0.00 0.00 3.53
678 711 2.962421 TGTCAACCCAAGTCCAATTTCC 59.038 45.455 0.00 0.00 0.00 3.13
751 784 5.554822 AAAGAAGAAAAACTACACACGCA 57.445 34.783 0.00 0.00 0.00 5.24
778 811 3.131396 ACACACGCTAAAACTCTCCAAG 58.869 45.455 0.00 0.00 0.00 3.61
781 814 3.673809 CAGTACACACGCTAAAACTCTCC 59.326 47.826 0.00 0.00 0.00 3.71
786 819 4.525411 AACACAGTACACACGCTAAAAC 57.475 40.909 0.00 0.00 0.00 2.43
878 915 3.326747 CAAGTTTCCAACTCCTCGGTAG 58.673 50.000 0.00 0.00 41.91 3.18
892 929 7.255277 GGAGCCTCACATTATATTCCAAGTTTC 60.255 40.741 0.00 0.00 0.00 2.78
897 934 4.202567 GGGGAGCCTCACATTATATTCCAA 60.203 45.833 0.00 0.00 0.00 3.53
898 935 3.330701 GGGGAGCCTCACATTATATTCCA 59.669 47.826 0.00 0.00 0.00 3.53
900 937 3.008049 ACGGGGAGCCTCACATTATATTC 59.992 47.826 0.00 0.00 0.00 1.75
935 1752 0.690192 TGGTCTGATTTCGCTTCCCA 59.310 50.000 0.00 0.00 0.00 4.37
1174 1999 1.188219 ACCGCCGGCTATCAGATGAT 61.188 55.000 26.68 0.31 38.51 2.45
1175 2000 1.399744 AACCGCCGGCTATCAGATGA 61.400 55.000 26.68 0.00 0.00 2.92
1176 2001 0.946221 GAACCGCCGGCTATCAGATG 60.946 60.000 26.68 5.71 0.00 2.90
1198 2023 7.012799 AGGAAACTAGAGAAAGAAACAGCAAAG 59.987 37.037 0.00 0.00 40.61 2.77
1244 2069 1.194218 GGTGGGGGTGATTGAATTGG 58.806 55.000 0.00 0.00 0.00 3.16
1285 2110 7.664731 GGGAATCAGATATTTGTGATGACTGAT 59.335 37.037 0.00 0.00 42.69 2.90
1286 2111 6.994496 GGGAATCAGATATTTGTGATGACTGA 59.006 38.462 0.00 0.00 36.10 3.41
1287 2112 6.073385 CGGGAATCAGATATTTGTGATGACTG 60.073 42.308 0.00 0.00 36.10 3.51
1288 2113 5.994054 CGGGAATCAGATATTTGTGATGACT 59.006 40.000 0.00 0.00 36.10 3.41
1289 2114 5.334414 GCGGGAATCAGATATTTGTGATGAC 60.334 44.000 0.00 0.00 36.10 3.06
1290 2115 4.756642 GCGGGAATCAGATATTTGTGATGA 59.243 41.667 0.00 0.00 36.10 2.92
1291 2116 4.083110 GGCGGGAATCAGATATTTGTGATG 60.083 45.833 0.00 0.00 36.10 3.07
1292 2117 4.074970 GGCGGGAATCAGATATTTGTGAT 58.925 43.478 0.00 0.00 37.45 3.06
1293 2118 3.476552 GGCGGGAATCAGATATTTGTGA 58.523 45.455 0.00 0.00 0.00 3.58
1294 2119 2.224079 CGGCGGGAATCAGATATTTGTG 59.776 50.000 0.00 0.00 0.00 3.33
1295 2120 2.494059 CGGCGGGAATCAGATATTTGT 58.506 47.619 0.00 0.00 0.00 2.83
1429 2295 7.516943 GCTGTAAATTAGATGAAACTAGACGGC 60.517 40.741 0.00 0.00 0.00 5.68
1500 2366 3.588955 GGGAAAAGAGCAAAATCGCATT 58.411 40.909 0.00 0.00 0.00 3.56
1563 2471 5.599999 AACATCCTCTCATATATACGGGC 57.400 43.478 0.00 0.00 0.00 6.13
1696 2604 1.179152 TCATGCATGCCTCAAGTTGG 58.821 50.000 22.25 0.00 0.00 3.77
1796 2707 4.346129 GCGCTTCATCAGAATAAAACAGG 58.654 43.478 0.00 0.00 32.31 4.00
1837 2748 3.983344 ACTTGCTTCATTGCGTTTGATTC 59.017 39.130 0.00 0.00 35.36 2.52
1866 2777 3.268330 TCTGCACATTCTTCATGCTCTC 58.732 45.455 0.00 0.00 40.13 3.20
2160 3097 1.062587 GCCATTCACGACTGCACATAC 59.937 52.381 0.00 0.00 0.00 2.39
2324 3262 7.865706 ACAACCATGATAGCTAAAACTAAGG 57.134 36.000 0.00 0.00 0.00 2.69
2379 3317 3.390311 GGAGTCAAACCCGGATAATAGGT 59.610 47.826 0.73 0.00 34.60 3.08
2380 3318 3.646637 AGGAGTCAAACCCGGATAATAGG 59.353 47.826 0.73 0.00 0.00 2.57
2457 3402 6.002082 AGATTACTACAAAGGTCAAACCCAC 58.998 40.000 0.00 0.00 39.75 4.61
2469 3513 7.041372 GCTTGGACAAGTTCAGATTACTACAAA 60.041 37.037 13.08 0.00 40.45 2.83
2506 3550 6.307776 TGATACCTGGAACCTCTATCACTAG 58.692 44.000 0.00 0.00 0.00 2.57
2553 3599 7.173907 GCATAAGTAGGTGCATTCAGATTACAT 59.826 37.037 0.00 0.00 40.94 2.29
2555 3601 6.708054 AGCATAAGTAGGTGCATTCAGATTAC 59.292 38.462 0.00 0.00 43.63 1.89
2753 3889 3.610114 GCTGCTGAAAACGATGTTGACAT 60.610 43.478 0.00 0.00 39.70 3.06
2784 3920 5.730568 GCCGGAAATGCTGTATAAAGACTTG 60.731 44.000 5.05 0.00 0.00 3.16
2853 3989 7.097192 GGCGGACATATTCATATTCAGTAGAA 58.903 38.462 0.00 0.00 38.31 2.10
2936 5408 8.943909 TTTCCAAACGGTATAATTTTTGTGTT 57.056 26.923 0.00 0.00 0.00 3.32
2937 5409 9.198837 GATTTCCAAACGGTATAATTTTTGTGT 57.801 29.630 0.00 0.00 0.00 3.72
2938 5410 8.369588 CGATTTCCAAACGGTATAATTTTTGTG 58.630 33.333 0.00 0.00 0.00 3.33
2939 5411 7.542824 CCGATTTCCAAACGGTATAATTTTTGT 59.457 33.333 0.00 0.00 41.47 2.83
2940 5412 7.755822 TCCGATTTCCAAACGGTATAATTTTTG 59.244 33.333 0.00 0.00 45.71 2.44
2941 5413 7.828712 TCCGATTTCCAAACGGTATAATTTTT 58.171 30.769 0.00 0.00 45.71 1.94
2942 5414 7.393841 TCCGATTTCCAAACGGTATAATTTT 57.606 32.000 0.00 0.00 45.71 1.82
2943 5415 7.393841 TTCCGATTTCCAAACGGTATAATTT 57.606 32.000 0.00 0.00 45.71 1.82
2944 5416 7.519328 CGATTCCGATTTCCAAACGGTATAATT 60.519 37.037 0.00 0.00 45.71 1.40
2945 5417 6.073440 CGATTCCGATTTCCAAACGGTATAAT 60.073 38.462 0.00 0.00 45.71 1.28
2946 5418 5.234757 CGATTCCGATTTCCAAACGGTATAA 59.765 40.000 0.00 0.00 45.71 0.98
2947 5419 4.746115 CGATTCCGATTTCCAAACGGTATA 59.254 41.667 0.00 0.00 45.71 1.47
2948 5420 3.558418 CGATTCCGATTTCCAAACGGTAT 59.442 43.478 0.00 0.00 45.71 2.73
2949 5421 2.931325 CGATTCCGATTTCCAAACGGTA 59.069 45.455 0.00 0.00 45.71 4.02
2950 5422 1.735571 CGATTCCGATTTCCAAACGGT 59.264 47.619 0.00 0.00 45.71 4.83
2951 5423 2.004017 TCGATTCCGATTTCCAAACGG 58.996 47.619 0.00 0.00 46.71 4.44
2963 5435 2.391879 GTTCGGGAGTTATCGATTCCG 58.608 52.381 1.71 9.97 35.06 4.30
2964 5436 2.391879 CGTTCGGGAGTTATCGATTCC 58.608 52.381 1.71 4.42 35.25 3.01
2965 5437 1.785430 GCGTTCGGGAGTTATCGATTC 59.215 52.381 1.71 0.00 35.25 2.52
2966 5438 1.849097 GCGTTCGGGAGTTATCGATT 58.151 50.000 1.71 0.00 35.25 3.34
2967 5439 0.317603 CGCGTTCGGGAGTTATCGAT 60.318 55.000 2.16 2.16 35.25 3.59
2968 5440 1.063006 CGCGTTCGGGAGTTATCGA 59.937 57.895 0.00 0.00 0.00 3.59
2969 5441 2.574222 GCGCGTTCGGGAGTTATCG 61.574 63.158 8.43 0.00 35.95 2.92
2970 5442 3.306634 GCGCGTTCGGGAGTTATC 58.693 61.111 8.43 0.00 35.95 1.75
2986 5458 0.430858 GAAACATCAAAACGCAGCGC 59.569 50.000 16.61 0.00 0.00 5.92
2987 5459 1.052287 GGAAACATCAAAACGCAGCG 58.948 50.000 14.82 14.82 0.00 5.18
2988 5460 1.052287 CGGAAACATCAAAACGCAGC 58.948 50.000 0.00 0.00 0.00 5.25
2989 5461 2.307049 GACGGAAACATCAAAACGCAG 58.693 47.619 0.00 0.00 0.00 5.18
2990 5462 1.002251 GGACGGAAACATCAAAACGCA 60.002 47.619 0.00 0.00 0.00 5.24
2991 5463 1.681825 GGACGGAAACATCAAAACGC 58.318 50.000 0.00 0.00 0.00 4.84
2992 5464 1.527736 TCGGACGGAAACATCAAAACG 59.472 47.619 0.00 0.00 0.00 3.60
2993 5465 3.294102 GTTCGGACGGAAACATCAAAAC 58.706 45.455 0.00 0.00 36.14 2.43
2994 5466 2.032722 CGTTCGGACGGAAACATCAAAA 60.033 45.455 8.83 0.00 45.32 2.44
2995 5467 1.527736 CGTTCGGACGGAAACATCAAA 59.472 47.619 8.83 0.00 45.32 2.69
2996 5468 1.141645 CGTTCGGACGGAAACATCAA 58.858 50.000 8.83 0.00 45.32 2.57
2997 5469 2.817035 CGTTCGGACGGAAACATCA 58.183 52.632 8.83 0.00 45.32 3.07
3020 5492 0.647410 CTGTAAATCTGACGCCGCAG 59.353 55.000 2.73 2.73 37.24 5.18
3021 5493 0.037697 ACTGTAAATCTGACGCCGCA 60.038 50.000 0.00 0.00 0.00 5.69
3022 5494 1.587034 GTACTGTAAATCTGACGCCGC 59.413 52.381 0.00 0.00 0.00 6.53
3023 5495 1.844357 CGTACTGTAAATCTGACGCCG 59.156 52.381 0.00 0.00 0.00 6.46
3024 5496 3.141002 TCGTACTGTAAATCTGACGCC 57.859 47.619 0.00 0.00 0.00 5.68
3025 5497 5.035443 AGATTCGTACTGTAAATCTGACGC 58.965 41.667 11.91 0.00 38.11 5.19
3026 5498 8.610855 TTAAGATTCGTACTGTAAATCTGACG 57.389 34.615 12.95 3.72 39.17 4.35
3030 5502 9.245962 CCGATTTAAGATTCGTACTGTAAATCT 57.754 33.333 8.32 8.32 40.55 2.40
3031 5503 8.002665 GCCGATTTAAGATTCGTACTGTAAATC 58.997 37.037 4.72 4.72 35.81 2.17
3032 5504 7.709613 AGCCGATTTAAGATTCGTACTGTAAAT 59.290 33.333 0.00 0.00 33.60 1.40
3033 5505 7.009815 CAGCCGATTTAAGATTCGTACTGTAAA 59.990 37.037 12.00 0.00 35.05 2.01
3034 5506 6.474427 CAGCCGATTTAAGATTCGTACTGTAA 59.526 38.462 12.00 0.00 35.05 2.41
3035 5507 5.975344 CAGCCGATTTAAGATTCGTACTGTA 59.025 40.000 12.00 0.00 35.05 2.74
3036 5508 4.804139 CAGCCGATTTAAGATTCGTACTGT 59.196 41.667 12.00 0.00 35.05 3.55
3037 5509 4.804139 ACAGCCGATTTAAGATTCGTACTG 59.196 41.667 15.39 15.39 40.53 2.74
3038 5510 4.804139 CACAGCCGATTTAAGATTCGTACT 59.196 41.667 0.00 0.00 33.60 2.73
3039 5511 4.565564 ACACAGCCGATTTAAGATTCGTAC 59.434 41.667 0.00 0.00 33.60 3.67
3040 5512 4.751060 ACACAGCCGATTTAAGATTCGTA 58.249 39.130 0.00 0.00 33.60 3.43
3041 5513 3.596214 ACACAGCCGATTTAAGATTCGT 58.404 40.909 0.00 0.00 33.60 3.85
3042 5514 4.142902 ACAACACAGCCGATTTAAGATTCG 60.143 41.667 0.00 0.00 35.19 3.34
3043 5515 5.106712 TGACAACACAGCCGATTTAAGATTC 60.107 40.000 0.00 0.00 0.00 2.52
3044 5516 4.759693 TGACAACACAGCCGATTTAAGATT 59.240 37.500 0.00 0.00 0.00 2.40
3045 5517 4.154195 GTGACAACACAGCCGATTTAAGAT 59.846 41.667 0.00 0.00 45.32 2.40
3046 5518 3.496884 GTGACAACACAGCCGATTTAAGA 59.503 43.478 0.00 0.00 45.32 2.10
3047 5519 3.664276 CGTGACAACACAGCCGATTTAAG 60.664 47.826 0.00 0.00 46.20 1.85
3048 5520 2.222213 CGTGACAACACAGCCGATTTAA 59.778 45.455 0.00 0.00 46.20 1.52
3049 5521 1.795872 CGTGACAACACAGCCGATTTA 59.204 47.619 0.00 0.00 46.20 1.40
3050 5522 0.586319 CGTGACAACACAGCCGATTT 59.414 50.000 0.00 0.00 46.20 2.17
3051 5523 0.531974 ACGTGACAACACAGCCGATT 60.532 50.000 0.00 0.00 46.20 3.34
3052 5524 0.944311 GACGTGACAACACAGCCGAT 60.944 55.000 0.00 0.00 46.20 4.18
3053 5525 1.590525 GACGTGACAACACAGCCGA 60.591 57.895 0.00 0.00 46.20 5.54
3054 5526 1.880796 TGACGTGACAACACAGCCG 60.881 57.895 0.00 0.00 46.20 5.52
3055 5527 1.641677 GTGACGTGACAACACAGCC 59.358 57.895 0.00 0.00 46.20 4.85
3056 5528 1.272715 CGTGACGTGACAACACAGC 59.727 57.895 5.87 0.00 46.20 4.40
3057 5529 1.272715 GCGTGACGTGACAACACAG 59.727 57.895 6.91 0.00 46.20 3.66
3058 5530 1.014564 TTGCGTGACGTGACAACACA 61.015 50.000 6.91 0.00 46.20 3.72
3059 5531 0.095589 TTTGCGTGACGTGACAACAC 59.904 50.000 6.91 0.00 42.88 3.32
3060 5532 0.796927 TTTTGCGTGACGTGACAACA 59.203 45.000 6.91 0.00 0.00 3.33
3061 5533 1.884756 TTTTTGCGTGACGTGACAAC 58.115 45.000 6.91 0.00 0.00 3.32
3077 5549 2.255881 CGGGCCCGAACGAGTTTTT 61.256 57.895 41.82 0.00 42.83 1.94
3078 5550 2.667199 CGGGCCCGAACGAGTTTT 60.667 61.111 41.82 0.00 42.83 2.43
3079 5551 3.618750 TCGGGCCCGAACGAGTTT 61.619 61.111 43.93 0.00 46.01 2.66
3089 5561 4.231439 GTCGGTGGTATCGGGCCC 62.231 72.222 13.57 13.57 0.00 5.80
3090 5562 4.231439 GGTCGGTGGTATCGGGCC 62.231 72.222 0.00 0.00 0.00 5.80
3091 5563 4.231439 GGGTCGGTGGTATCGGGC 62.231 72.222 0.00 0.00 0.00 6.13
3092 5564 3.543641 GGGGTCGGTGGTATCGGG 61.544 72.222 0.00 0.00 0.00 5.14
3093 5565 3.908081 CGGGGTCGGTGGTATCGG 61.908 72.222 0.00 0.00 0.00 4.18
3094 5566 2.417257 TTCGGGGTCGGTGGTATCG 61.417 63.158 0.00 0.00 36.95 2.92
3095 5567 1.142531 GTTCGGGGTCGGTGGTATC 59.857 63.158 0.00 0.00 36.95 2.24
3096 5568 2.713967 CGTTCGGGGTCGGTGGTAT 61.714 63.158 0.00 0.00 36.95 2.73
3097 5569 3.372730 CGTTCGGGGTCGGTGGTA 61.373 66.667 0.00 0.00 36.95 3.25
3103 5575 4.796231 CTGAGGCGTTCGGGGTCG 62.796 72.222 0.00 0.00 37.82 4.79
3104 5576 3.644399 GACTGAGGCGTTCGGGGTC 62.644 68.421 3.51 0.00 36.43 4.46
3105 5577 3.692406 GACTGAGGCGTTCGGGGT 61.692 66.667 3.51 0.00 36.43 4.95
3106 5578 3.382832 AGACTGAGGCGTTCGGGG 61.383 66.667 3.51 0.00 36.43 5.73
3107 5579 2.125912 CAGACTGAGGCGTTCGGG 60.126 66.667 0.00 0.00 36.43 5.14
3108 5580 1.444553 GACAGACTGAGGCGTTCGG 60.445 63.158 10.08 0.00 38.22 4.30
3109 5581 0.455295 GAGACAGACTGAGGCGTTCG 60.455 60.000 10.08 0.00 0.00 3.95
3110 5582 0.885196 AGAGACAGACTGAGGCGTTC 59.115 55.000 10.08 0.00 0.00 3.95
3111 5583 0.885196 GAGAGACAGACTGAGGCGTT 59.115 55.000 10.08 0.00 0.00 4.84
3112 5584 0.037590 AGAGAGACAGACTGAGGCGT 59.962 55.000 10.08 0.00 0.00 5.68
3113 5585 0.732571 GAGAGAGACAGACTGAGGCG 59.267 60.000 10.08 0.00 0.00 5.52
3114 5586 2.017049 GAGAGAGAGACAGACTGAGGC 58.983 57.143 10.08 0.00 0.00 4.70
3115 5587 3.634397 AGAGAGAGAGACAGACTGAGG 57.366 52.381 10.08 0.00 0.00 3.86
3116 5588 5.760253 GGATAAGAGAGAGAGACAGACTGAG 59.240 48.000 10.08 0.00 0.00 3.35
3117 5589 5.428457 AGGATAAGAGAGAGAGACAGACTGA 59.572 44.000 10.08 0.00 0.00 3.41
3118 5590 5.684704 AGGATAAGAGAGAGAGACAGACTG 58.315 45.833 0.00 0.00 0.00 3.51
3119 5591 5.975988 AGGATAAGAGAGAGAGACAGACT 57.024 43.478 0.00 0.00 0.00 3.24
3120 5592 7.404671 AAAAGGATAAGAGAGAGAGACAGAC 57.595 40.000 0.00 0.00 0.00 3.51
3121 5593 6.605594 GGAAAAGGATAAGAGAGAGAGACAGA 59.394 42.308 0.00 0.00 0.00 3.41
3122 5594 6.183360 GGGAAAAGGATAAGAGAGAGAGACAG 60.183 46.154 0.00 0.00 0.00 3.51
3123 5595 5.659079 GGGAAAAGGATAAGAGAGAGAGACA 59.341 44.000 0.00 0.00 0.00 3.41
3124 5596 5.069914 GGGGAAAAGGATAAGAGAGAGAGAC 59.930 48.000 0.00 0.00 0.00 3.36
3125 5597 5.212745 GGGGAAAAGGATAAGAGAGAGAGA 58.787 45.833 0.00 0.00 0.00 3.10
3126 5598 4.965532 TGGGGAAAAGGATAAGAGAGAGAG 59.034 45.833 0.00 0.00 0.00 3.20
3127 5599 4.960332 TGGGGAAAAGGATAAGAGAGAGA 58.040 43.478 0.00 0.00 0.00 3.10
3128 5600 5.432645 GTTGGGGAAAAGGATAAGAGAGAG 58.567 45.833 0.00 0.00 0.00 3.20
3129 5601 4.227527 GGTTGGGGAAAAGGATAAGAGAGA 59.772 45.833 0.00 0.00 0.00 3.10
3130 5602 4.018415 TGGTTGGGGAAAAGGATAAGAGAG 60.018 45.833 0.00 0.00 0.00 3.20
3131 5603 3.920197 TGGTTGGGGAAAAGGATAAGAGA 59.080 43.478 0.00 0.00 0.00 3.10
3132 5604 4.017126 GTGGTTGGGGAAAAGGATAAGAG 58.983 47.826 0.00 0.00 0.00 2.85
3133 5605 3.399644 TGTGGTTGGGGAAAAGGATAAGA 59.600 43.478 0.00 0.00 0.00 2.10
3134 5606 3.509967 GTGTGGTTGGGGAAAAGGATAAG 59.490 47.826 0.00 0.00 0.00 1.73
3135 5607 3.502356 GTGTGGTTGGGGAAAAGGATAA 58.498 45.455 0.00 0.00 0.00 1.75
3136 5608 2.225167 GGTGTGGTTGGGGAAAAGGATA 60.225 50.000 0.00 0.00 0.00 2.59
3137 5609 1.482365 GGTGTGGTTGGGGAAAAGGAT 60.482 52.381 0.00 0.00 0.00 3.24
3138 5610 0.105913 GGTGTGGTTGGGGAAAAGGA 60.106 55.000 0.00 0.00 0.00 3.36
3139 5611 0.105709 AGGTGTGGTTGGGGAAAAGG 60.106 55.000 0.00 0.00 0.00 3.11
3140 5612 1.133482 AGAGGTGTGGTTGGGGAAAAG 60.133 52.381 0.00 0.00 0.00 2.27
3141 5613 0.930726 AGAGGTGTGGTTGGGGAAAA 59.069 50.000 0.00 0.00 0.00 2.29
3142 5614 0.184933 CAGAGGTGTGGTTGGGGAAA 59.815 55.000 0.00 0.00 0.00 3.13
3143 5615 1.843421 CAGAGGTGTGGTTGGGGAA 59.157 57.895 0.00 0.00 0.00 3.97
3144 5616 2.829384 GCAGAGGTGTGGTTGGGGA 61.829 63.158 0.00 0.00 0.00 4.81
3145 5617 2.282462 GCAGAGGTGTGGTTGGGG 60.282 66.667 0.00 0.00 0.00 4.96
3146 5618 1.302832 GAGCAGAGGTGTGGTTGGG 60.303 63.158 0.00 0.00 0.00 4.12
3147 5619 0.886490 GTGAGCAGAGGTGTGGTTGG 60.886 60.000 0.00 0.00 0.00 3.77
3148 5620 0.107456 AGTGAGCAGAGGTGTGGTTG 59.893 55.000 0.00 0.00 0.00 3.77
3149 5621 0.839946 AAGTGAGCAGAGGTGTGGTT 59.160 50.000 0.00 0.00 0.00 3.67
3150 5622 0.839946 AAAGTGAGCAGAGGTGTGGT 59.160 50.000 0.00 0.00 0.00 4.16
3151 5623 1.233019 CAAAGTGAGCAGAGGTGTGG 58.767 55.000 0.00 0.00 0.00 4.17
3152 5624 0.590195 GCAAAGTGAGCAGAGGTGTG 59.410 55.000 0.00 0.00 0.00 3.82
3153 5625 0.471617 AGCAAAGTGAGCAGAGGTGT 59.528 50.000 0.00 0.00 0.00 4.16
3154 5626 0.873054 CAGCAAAGTGAGCAGAGGTG 59.127 55.000 0.00 0.00 0.00 4.00
3155 5627 0.888285 GCAGCAAAGTGAGCAGAGGT 60.888 55.000 0.00 0.00 0.00 3.85
3156 5628 0.887836 TGCAGCAAAGTGAGCAGAGG 60.888 55.000 0.00 0.00 32.48 3.69
3157 5629 0.237761 GTGCAGCAAAGTGAGCAGAG 59.762 55.000 0.00 0.00 37.72 3.35
3158 5630 0.464193 TGTGCAGCAAAGTGAGCAGA 60.464 50.000 0.00 0.00 37.72 4.26
3159 5631 0.596577 ATGTGCAGCAAAGTGAGCAG 59.403 50.000 0.00 0.00 37.72 4.24
3160 5632 1.001048 GAATGTGCAGCAAAGTGAGCA 60.001 47.619 0.00 0.00 34.10 4.26
3161 5633 1.268899 AGAATGTGCAGCAAAGTGAGC 59.731 47.619 0.00 0.00 0.00 4.26
3162 5634 2.412455 CGAGAATGTGCAGCAAAGTGAG 60.412 50.000 0.00 0.00 0.00 3.51
3163 5635 1.532437 CGAGAATGTGCAGCAAAGTGA 59.468 47.619 0.00 0.00 0.00 3.41
3164 5636 1.959747 CGAGAATGTGCAGCAAAGTG 58.040 50.000 0.00 0.00 0.00 3.16
3165 5637 0.239347 GCGAGAATGTGCAGCAAAGT 59.761 50.000 0.00 0.00 0.00 2.66
3166 5638 0.455633 GGCGAGAATGTGCAGCAAAG 60.456 55.000 0.00 0.00 0.00 2.77
3167 5639 1.171549 TGGCGAGAATGTGCAGCAAA 61.172 50.000 0.00 0.00 0.00 3.68
3168 5640 1.600356 TGGCGAGAATGTGCAGCAA 60.600 52.632 0.00 0.00 0.00 3.91
3169 5641 2.032376 TGGCGAGAATGTGCAGCA 59.968 55.556 0.00 0.00 0.00 4.41
3170 5642 2.482374 GTGGCGAGAATGTGCAGC 59.518 61.111 0.00 0.00 0.00 5.25
3171 5643 1.028330 ATGGTGGCGAGAATGTGCAG 61.028 55.000 0.00 0.00 0.00 4.41
3172 5644 1.002257 ATGGTGGCGAGAATGTGCA 60.002 52.632 0.00 0.00 0.00 4.57
3173 5645 1.723870 GATGGTGGCGAGAATGTGC 59.276 57.895 0.00 0.00 0.00 4.57
3174 5646 2.009108 CGATGGTGGCGAGAATGTG 58.991 57.895 0.00 0.00 0.00 3.21
3175 5647 1.815421 GCGATGGTGGCGAGAATGT 60.815 57.895 0.00 0.00 0.00 2.71
3176 5648 2.537560 GGCGATGGTGGCGAGAATG 61.538 63.158 0.00 0.00 0.00 2.67
3177 5649 2.203070 GGCGATGGTGGCGAGAAT 60.203 61.111 0.00 0.00 0.00 2.40
3178 5650 3.247056 TTGGCGATGGTGGCGAGAA 62.247 57.895 0.00 0.00 37.19 2.87
3179 5651 3.700970 TTGGCGATGGTGGCGAGA 61.701 61.111 0.00 0.00 37.19 4.04
3180 5652 3.499737 GTTGGCGATGGTGGCGAG 61.500 66.667 0.00 0.00 37.19 5.03
3181 5653 3.620419 ATGTTGGCGATGGTGGCGA 62.620 57.895 0.00 0.00 37.19 5.54
3182 5654 3.112126 GATGTTGGCGATGGTGGCG 62.112 63.158 0.00 0.00 37.19 5.69
3183 5655 2.800736 GATGTTGGCGATGGTGGC 59.199 61.111 0.00 0.00 0.00 5.01
3184 5656 1.449423 TCGATGTTGGCGATGGTGG 60.449 57.895 0.00 0.00 32.09 4.61
3185 5657 1.705337 GGTCGATGTTGGCGATGGTG 61.705 60.000 0.00 0.00 40.19 4.17
3186 5658 1.449601 GGTCGATGTTGGCGATGGT 60.450 57.895 0.00 0.00 40.19 3.55
3187 5659 2.525248 CGGTCGATGTTGGCGATGG 61.525 63.158 0.00 0.00 40.19 3.51
3188 5660 3.005898 CGGTCGATGTTGGCGATG 58.994 61.111 0.00 0.00 40.19 3.84
3189 5661 2.890474 GCGGTCGATGTTGGCGAT 60.890 61.111 0.00 0.00 40.19 4.58
3190 5662 4.365505 TGCGGTCGATGTTGGCGA 62.366 61.111 0.00 0.00 35.08 5.54
3191 5663 3.853330 CTGCGGTCGATGTTGGCG 61.853 66.667 0.00 0.00 0.00 5.69
3192 5664 1.766143 GATCTGCGGTCGATGTTGGC 61.766 60.000 0.00 0.00 0.00 4.52
3193 5665 0.460109 TGATCTGCGGTCGATGTTGG 60.460 55.000 0.00 0.00 0.00 3.77
3194 5666 0.926155 CTGATCTGCGGTCGATGTTG 59.074 55.000 0.00 0.00 0.00 3.33
3195 5667 0.807667 GCTGATCTGCGGTCGATGTT 60.808 55.000 8.95 0.00 0.00 2.71
3196 5668 1.227089 GCTGATCTGCGGTCGATGT 60.227 57.895 8.95 0.00 0.00 3.06
3197 5669 0.938637 GAGCTGATCTGCGGTCGATG 60.939 60.000 17.62 0.00 38.13 3.84
3198 5670 1.361993 GAGCTGATCTGCGGTCGAT 59.638 57.895 17.62 0.40 38.13 3.59
3199 5671 2.775856 GGAGCTGATCTGCGGTCGA 61.776 63.158 17.62 0.00 38.13 4.20
3200 5672 2.279120 GGAGCTGATCTGCGGTCG 60.279 66.667 17.62 0.00 38.13 4.79
3201 5673 2.107953 GGGAGCTGATCTGCGGTC 59.892 66.667 17.62 11.24 38.13 4.79
3202 5674 3.842923 CGGGAGCTGATCTGCGGT 61.843 66.667 17.62 2.58 38.13 5.68
3238 5710 4.925307 CAATGGTCGATGCGCGCG 62.925 66.667 28.44 28.44 40.61 6.86
3239 5711 4.596180 CCAATGGTCGATGCGCGC 62.596 66.667 27.26 27.26 40.61 6.86
3240 5712 3.195002 ACCAATGGTCGATGCGCG 61.195 61.111 0.00 0.00 42.69 6.86
3241 5713 2.404789 CACCAATGGTCGATGCGC 59.595 61.111 0.00 0.00 31.02 6.09
3242 5714 2.404789 GCACCAATGGTCGATGCG 59.595 61.111 0.00 0.00 31.02 4.73
3243 5715 2.404789 CGCACCAATGGTCGATGC 59.595 61.111 15.66 9.84 31.02 3.91
3244 5716 2.472059 CCCGCACCAATGGTCGATG 61.472 63.158 20.22 4.81 31.02 3.84
3245 5717 2.124736 CCCGCACCAATGGTCGAT 60.125 61.111 20.22 0.00 31.02 3.59
3248 5720 3.443045 CTGCCCGCACCAATGGTC 61.443 66.667 0.00 0.00 31.02 4.02
3249 5721 3.925630 CTCTGCCCGCACCAATGGT 62.926 63.158 0.00 0.00 35.62 3.55
3250 5722 3.136123 CTCTGCCCGCACCAATGG 61.136 66.667 0.00 0.00 0.00 3.16
3251 5723 2.046023 TCTCTGCCCGCACCAATG 60.046 61.111 0.00 0.00 0.00 2.82
3252 5724 2.270205 CTCTCTGCCCGCACCAAT 59.730 61.111 0.00 0.00 0.00 3.16
3253 5725 4.020617 CCTCTCTGCCCGCACCAA 62.021 66.667 0.00 0.00 0.00 3.67
3255 5727 4.154347 CTCCTCTCTGCCCGCACC 62.154 72.222 0.00 0.00 0.00 5.01
3256 5728 4.828925 GCTCCTCTCTGCCCGCAC 62.829 72.222 0.00 0.00 0.00 5.34
3260 5732 4.154347 CACCGCTCCTCTCTGCCC 62.154 72.222 0.00 0.00 0.00 5.36
3261 5733 3.071206 TCACCGCTCCTCTCTGCC 61.071 66.667 0.00 0.00 0.00 4.85
3262 5734 2.003658 CTCTCACCGCTCCTCTCTGC 62.004 65.000 0.00 0.00 0.00 4.26
3263 5735 1.383456 CCTCTCACCGCTCCTCTCTG 61.383 65.000 0.00 0.00 0.00 3.35
3264 5736 1.077068 CCTCTCACCGCTCCTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
3265 5737 2.124693 CCCTCTCACCGCTCCTCTC 61.125 68.421 0.00 0.00 0.00 3.20
3266 5738 2.043450 CCCTCTCACCGCTCCTCT 60.043 66.667 0.00 0.00 0.00 3.69
3267 5739 2.043852 TCCCTCTCACCGCTCCTC 60.044 66.667 0.00 0.00 0.00 3.71
3268 5740 1.943730 ATCTCCCTCTCACCGCTCCT 61.944 60.000 0.00 0.00 0.00 3.69
3269 5741 1.456705 ATCTCCCTCTCACCGCTCC 60.457 63.158 0.00 0.00 0.00 4.70
3270 5742 1.739049 CATCTCCCTCTCACCGCTC 59.261 63.158 0.00 0.00 0.00 5.03
3271 5743 1.760086 CCATCTCCCTCTCACCGCT 60.760 63.158 0.00 0.00 0.00 5.52
3272 5744 2.801631 CCCATCTCCCTCTCACCGC 61.802 68.421 0.00 0.00 0.00 5.68
3273 5745 2.136878 CCCCATCTCCCTCTCACCG 61.137 68.421 0.00 0.00 0.00 4.94
3274 5746 1.768077 CCCCCATCTCCCTCTCACC 60.768 68.421 0.00 0.00 0.00 4.02
3275 5747 3.978164 CCCCCATCTCCCTCTCAC 58.022 66.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.