Multiple sequence alignment - TraesCS2B01G068000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G068000 chr2B 100.000 3179 0 0 1 3179 34537203 34540381 0.000000e+00 5871.0
1 TraesCS2B01G068000 chr2B 100.000 2405 0 0 3626 6030 34540828 34543232 0.000000e+00 4442.0
2 TraesCS2B01G068000 chr2B 93.607 1439 51 9 722 2142 34452402 34453817 0.000000e+00 2109.0
3 TraesCS2B01G068000 chr2B 95.102 980 36 3 3652 4621 560266232 560265255 0.000000e+00 1533.0
4 TraesCS2B01G068000 chr2B 94.194 930 32 3 3626 4545 68341919 68342836 0.000000e+00 1399.0
5 TraesCS2B01G068000 chr2B 99.586 724 3 0 1 724 122660607 122659884 0.000000e+00 1321.0
6 TraesCS2B01G068000 chr2B 97.044 778 23 0 2138 2915 34475398 34476175 0.000000e+00 1310.0
7 TraesCS2B01G068000 chr2B 98.909 733 7 1 1 733 95327104 95326373 0.000000e+00 1308.0
8 TraesCS2B01G068000 chr2B 96.667 780 18 2 2138 2917 34453907 34454678 0.000000e+00 1290.0
9 TraesCS2B01G068000 chr2B 96.282 780 21 1 2138 2917 34434708 34435479 0.000000e+00 1273.0
10 TraesCS2B01G068000 chr2B 90.573 785 47 8 5245 6027 34436068 34436827 0.000000e+00 1014.0
11 TraesCS2B01G068000 chr2B 95.645 620 27 0 4611 5230 34476162 34476781 0.000000e+00 996.0
12 TraesCS2B01G068000 chr2B 95.330 621 27 2 4611 5230 34435464 34436083 0.000000e+00 985.0
13 TraesCS2B01G068000 chr2B 95.169 621 28 2 4611 5230 34454663 34455282 0.000000e+00 979.0
14 TraesCS2B01G068000 chr2B 91.604 536 41 4 722 1255 34439163 34439696 0.000000e+00 737.0
15 TraesCS2B01G068000 chr2B 95.213 376 16 1 1506 1881 34474638 34475011 1.450000e-165 593.0
16 TraesCS2B01G068000 chr2B 90.782 358 32 1 5245 5601 34476766 34477123 1.520000e-130 477.0
17 TraesCS2B01G068000 chr2B 88.674 362 39 2 5242 5601 34455264 34455625 1.990000e-119 440.0
18 TraesCS2B01G068000 chr2B 95.802 262 11 0 1881 2142 34475048 34475309 2.010000e-114 424.0
19 TraesCS2B01G068000 chr2B 79.745 627 90 22 975 1595 34295167 34295762 2.600000e-113 420.0
20 TraesCS2B01G068000 chr2B 93.893 262 16 0 1881 2142 34434357 34434618 4.380000e-106 396.0
21 TraesCS2B01G068000 chr2B 94.318 176 7 2 1706 1881 34434148 34434320 3.580000e-67 267.0
22 TraesCS2B01G068000 chr2B 97.581 124 3 0 2929 3052 560266877 560266754 4.730000e-51 213.0
23 TraesCS2B01G068000 chr2B 78.067 269 52 6 1402 1670 34440127 34440388 4.840000e-36 163.0
24 TraesCS2B01G068000 chr5B 95.110 1002 30 3 3626 4615 491038700 491039694 0.000000e+00 1561.0
25 TraesCS2B01G068000 chr5B 92.713 645 29 7 3628 4262 36601059 36601695 0.000000e+00 915.0
26 TraesCS2B01G068000 chr5B 94.969 159 8 0 3018 3176 36600817 36600975 3.610000e-62 250.0
27 TraesCS2B01G068000 chr5B 78.431 357 54 17 5631 5971 537858790 537859139 1.700000e-50 211.0
28 TraesCS2B01G068000 chr5B 83.824 136 21 1 5634 5768 600483909 600483774 1.760000e-25 128.0
29 TraesCS2B01G068000 chr4A 95.075 995 26 3 3626 4610 718536373 718535392 0.000000e+00 1544.0
30 TraesCS2B01G068000 chr4A 95.436 241 9 2 2939 3179 718536690 718536452 3.410000e-102 383.0
31 TraesCS2B01G068000 chr4A 80.988 405 66 9 5631 6030 624353778 624353380 1.630000e-80 311.0
32 TraesCS2B01G068000 chr3B 95.052 970 31 3 3657 4609 818303769 818302800 0.000000e+00 1509.0
33 TraesCS2B01G068000 chr3B 99.584 722 3 0 1 722 809360516 809361237 0.000000e+00 1317.0
34 TraesCS2B01G068000 chr3B 99.584 722 3 0 1 722 824169013 824169734 0.000000e+00 1317.0
35 TraesCS2B01G068000 chr3B 94.811 212 10 1 2968 3179 818304293 818304083 4.510000e-86 329.0
36 TraesCS2B01G068000 chr1B 95.802 929 29 2 3691 4610 669694956 669694029 0.000000e+00 1491.0
37 TraesCS2B01G068000 chr1B 99.185 736 4 2 1 735 580231862 580231128 0.000000e+00 1325.0
38 TraesCS2B01G068000 chr1B 95.339 236 9 2 2944 3179 669695628 669695395 2.050000e-99 374.0
39 TraesCS2B01G068000 chr1B 77.778 144 25 5 732 873 638760228 638760090 1.390000e-11 82.4
40 TraesCS2B01G068000 chr4B 93.072 996 46 3 3626 4611 498622180 498623162 0.000000e+00 1435.0
41 TraesCS2B01G068000 chr5D 93.203 971 55 2 3649 4608 320324914 320323944 0.000000e+00 1417.0
42 TraesCS2B01G068000 chr5D 84.058 414 43 9 5631 6030 487866180 487865776 1.590000e-100 377.0
43 TraesCS2B01G068000 chr5D 79.137 139 26 3 5634 5770 381150746 381150609 6.440000e-15 93.5
44 TraesCS2B01G068000 chr1A 95.662 876 28 1 3626 4491 582124594 582125469 0.000000e+00 1399.0
45 TraesCS2B01G068000 chr1A 91.209 1001 69 6 3626 4608 583544467 583545466 0.000000e+00 1343.0
46 TraesCS2B01G068000 chr1A 85.000 180 22 3 5798 5975 503549951 503549775 1.730000e-40 178.0
47 TraesCS2B01G068000 chr3A 99.724 724 2 0 1 724 18134928 18135651 0.000000e+00 1327.0
48 TraesCS2B01G068000 chr3A 99.449 726 4 0 1 726 9020934 9020209 0.000000e+00 1319.0
49 TraesCS2B01G068000 chr3A 92.040 892 54 5 3733 4608 1900179 1901069 0.000000e+00 1238.0
50 TraesCS2B01G068000 chr7A 99.586 725 3 0 1 725 9035251 9034527 0.000000e+00 1323.0
51 TraesCS2B01G068000 chr7A 98.912 735 6 2 1 734 31968164 31967431 0.000000e+00 1312.0
52 TraesCS2B01G068000 chr4D 92.308 923 56 5 3697 4608 10284693 10283775 0.000000e+00 1297.0
53 TraesCS2B01G068000 chr7D 91.075 930 63 9 3691 4607 600499340 600498418 0.000000e+00 1240.0
54 TraesCS2B01G068000 chr7D 75.758 231 43 9 728 953 628127321 628127099 2.970000e-18 104.0
55 TraesCS2B01G068000 chr2A 87.774 957 73 31 4652 5601 23288587 23289506 0.000000e+00 1079.0
56 TraesCS2B01G068000 chr2A 87.565 957 75 31 4652 5601 23266524 23267443 0.000000e+00 1068.0
57 TraesCS2B01G068000 chr2A 87.097 961 76 32 4652 5601 22838665 22837742 0.000000e+00 1044.0
58 TraesCS2B01G068000 chr2A 89.217 779 71 5 2138 2915 22939267 22938501 0.000000e+00 961.0
59 TraesCS2B01G068000 chr2A 88.785 214 18 4 1932 2140 22618995 22619207 2.160000e-64 257.0
60 TraesCS2B01G068000 chr2A 88.785 214 18 4 1932 2140 22651377 22651589 2.160000e-64 257.0
61 TraesCS2B01G068000 chr2A 88.785 214 18 4 1932 2140 22664820 22665032 2.160000e-64 257.0
62 TraesCS2B01G068000 chr2A 88.785 214 18 4 1932 2140 23190314 23190526 2.160000e-64 257.0
63 TraesCS2B01G068000 chrUn 87.565 957 75 31 4652 5601 146950007 146950926 0.000000e+00 1068.0
64 TraesCS2B01G068000 chrUn 87.252 957 78 31 4652 5601 233285055 233285974 0.000000e+00 1051.0
65 TraesCS2B01G068000 chrUn 89.217 779 71 5 2138 2915 147072163 147071397 0.000000e+00 961.0
66 TraesCS2B01G068000 chrUn 89.217 779 71 5 2138 2915 154083819 154083053 0.000000e+00 961.0
67 TraesCS2B01G068000 chrUn 89.290 775 70 5 2139 2912 210798988 210799750 0.000000e+00 959.0
68 TraesCS2B01G068000 chrUn 88.960 779 73 5 2138 2915 146913619 146912853 0.000000e+00 950.0
69 TraesCS2B01G068000 chrUn 88.974 780 71 5 2138 2915 154096983 154096217 0.000000e+00 950.0
70 TraesCS2B01G068000 chrUn 88.832 779 74 5 2138 2915 146898643 146897877 0.000000e+00 944.0
71 TraesCS2B01G068000 chrUn 93.782 579 36 0 4652 5230 374625761 374625183 0.000000e+00 870.0
72 TraesCS2B01G068000 chrUn 93.610 579 37 0 4652 5230 236253670 236253092 0.000000e+00 865.0
73 TraesCS2B01G068000 chrUn 91.061 358 30 2 5245 5601 154144980 154144624 3.270000e-132 483.0
74 TraesCS2B01G068000 chrUn 90.854 328 20 3 2586 2912 335749903 335750221 1.200000e-116 431.0
75 TraesCS2B01G068000 chrUn 88.785 214 18 4 1932 2140 210798683 210798895 2.160000e-64 257.0
76 TraesCS2B01G068000 chrUn 88.785 214 18 4 1932 2140 426721339 426721551 2.160000e-64 257.0
77 TraesCS2B01G068000 chrUn 88.318 214 19 4 1932 2140 147072467 147072255 1.000000e-62 252.0
78 TraesCS2B01G068000 chrUn 88.318 214 19 5 1932 2140 154084123 154083911 1.000000e-62 252.0
79 TraesCS2B01G068000 chrUn 87.850 214 20 4 1932 2140 146913923 146913711 4.670000e-61 246.0
80 TraesCS2B01G068000 chrUn 87.850 214 20 4 1932 2140 154097287 154097075 4.670000e-61 246.0
81 TraesCS2B01G068000 chrUn 87.850 214 20 4 1932 2140 413423232 413423444 4.670000e-61 246.0
82 TraesCS2B01G068000 chrUn 87.383 214 21 4 1932 2140 146898951 146898739 2.170000e-59 241.0
83 TraesCS2B01G068000 chr2D 86.885 793 72 8 2140 2912 21088455 21089235 0.000000e+00 859.0
84 TraesCS2B01G068000 chr6D 85.390 397 56 2 5631 6025 98114390 98114786 1.560000e-110 411.0
85 TraesCS2B01G068000 chr7B 82.119 151 13 13 728 873 729859088 729858947 3.820000e-22 117.0
86 TraesCS2B01G068000 chr7B 81.333 150 16 11 728 873 730018991 730018850 1.780000e-20 111.0
87 TraesCS2B01G068000 chr7B 81.081 148 19 8 728 873 729675130 729674990 6.390000e-20 110.0
88 TraesCS2B01G068000 chr7B 74.903 259 48 16 728 978 729595828 729595579 1.070000e-17 102.0
89 TraesCS2B01G068000 chr3D 80.556 144 21 5 732 873 340437558 340437420 2.970000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G068000 chr2B 34537203 34543232 6029 False 5156.500000 5871 100.000000 1 6030 2 chr2B.!!$F6 6029
1 TraesCS2B01G068000 chr2B 68341919 68342836 917 False 1399.000000 1399 94.194000 3626 4545 1 chr2B.!!$F2 919
2 TraesCS2B01G068000 chr2B 122659884 122660607 723 True 1321.000000 1321 99.586000 1 724 1 chr2B.!!$R2 723
3 TraesCS2B01G068000 chr2B 95326373 95327104 731 True 1308.000000 1308 98.909000 1 733 1 chr2B.!!$R1 732
4 TraesCS2B01G068000 chr2B 34452402 34455625 3223 False 1204.500000 2109 93.529250 722 5601 4 chr2B.!!$F4 4879
5 TraesCS2B01G068000 chr2B 560265255 560266877 1622 True 873.000000 1533 96.341500 2929 4621 2 chr2B.!!$R3 1692
6 TraesCS2B01G068000 chr2B 34474638 34477123 2485 False 760.000000 1310 94.897200 1506 5601 5 chr2B.!!$F5 4095
7 TraesCS2B01G068000 chr2B 34434148 34440388 6240 False 690.714286 1273 91.438143 722 6027 7 chr2B.!!$F3 5305
8 TraesCS2B01G068000 chr2B 34295167 34295762 595 False 420.000000 420 79.745000 975 1595 1 chr2B.!!$F1 620
9 TraesCS2B01G068000 chr5B 491038700 491039694 994 False 1561.000000 1561 95.110000 3626 4615 1 chr5B.!!$F1 989
10 TraesCS2B01G068000 chr5B 36600817 36601695 878 False 582.500000 915 93.841000 3018 4262 2 chr5B.!!$F3 1244
11 TraesCS2B01G068000 chr4A 718535392 718536690 1298 True 963.500000 1544 95.255500 2939 4610 2 chr4A.!!$R2 1671
12 TraesCS2B01G068000 chr3B 809360516 809361237 721 False 1317.000000 1317 99.584000 1 722 1 chr3B.!!$F1 721
13 TraesCS2B01G068000 chr3B 824169013 824169734 721 False 1317.000000 1317 99.584000 1 722 1 chr3B.!!$F2 721
14 TraesCS2B01G068000 chr3B 818302800 818304293 1493 True 919.000000 1509 94.931500 2968 4609 2 chr3B.!!$R1 1641
15 TraesCS2B01G068000 chr1B 580231128 580231862 734 True 1325.000000 1325 99.185000 1 735 1 chr1B.!!$R1 734
16 TraesCS2B01G068000 chr1B 669694029 669695628 1599 True 932.500000 1491 95.570500 2944 4610 2 chr1B.!!$R3 1666
17 TraesCS2B01G068000 chr4B 498622180 498623162 982 False 1435.000000 1435 93.072000 3626 4611 1 chr4B.!!$F1 985
18 TraesCS2B01G068000 chr5D 320323944 320324914 970 True 1417.000000 1417 93.203000 3649 4608 1 chr5D.!!$R1 959
19 TraesCS2B01G068000 chr1A 582124594 582125469 875 False 1399.000000 1399 95.662000 3626 4491 1 chr1A.!!$F1 865
20 TraesCS2B01G068000 chr1A 583544467 583545466 999 False 1343.000000 1343 91.209000 3626 4608 1 chr1A.!!$F2 982
21 TraesCS2B01G068000 chr3A 18134928 18135651 723 False 1327.000000 1327 99.724000 1 724 1 chr3A.!!$F2 723
22 TraesCS2B01G068000 chr3A 9020209 9020934 725 True 1319.000000 1319 99.449000 1 726 1 chr3A.!!$R1 725
23 TraesCS2B01G068000 chr3A 1900179 1901069 890 False 1238.000000 1238 92.040000 3733 4608 1 chr3A.!!$F1 875
24 TraesCS2B01G068000 chr7A 9034527 9035251 724 True 1323.000000 1323 99.586000 1 725 1 chr7A.!!$R1 724
25 TraesCS2B01G068000 chr7A 31967431 31968164 733 True 1312.000000 1312 98.912000 1 734 1 chr7A.!!$R2 733
26 TraesCS2B01G068000 chr4D 10283775 10284693 918 True 1297.000000 1297 92.308000 3697 4608 1 chr4D.!!$R1 911
27 TraesCS2B01G068000 chr7D 600498418 600499340 922 True 1240.000000 1240 91.075000 3691 4607 1 chr7D.!!$R1 916
28 TraesCS2B01G068000 chr2A 23288587 23289506 919 False 1079.000000 1079 87.774000 4652 5601 1 chr2A.!!$F6 949
29 TraesCS2B01G068000 chr2A 23266524 23267443 919 False 1068.000000 1068 87.565000 4652 5601 1 chr2A.!!$F5 949
30 TraesCS2B01G068000 chr2A 22837742 22838665 923 True 1044.000000 1044 87.097000 4652 5601 1 chr2A.!!$R1 949
31 TraesCS2B01G068000 chr2A 22938501 22939267 766 True 961.000000 961 89.217000 2138 2915 1 chr2A.!!$R2 777
32 TraesCS2B01G068000 chrUn 146950007 146950926 919 False 1068.000000 1068 87.565000 4652 5601 1 chrUn.!!$F1 949
33 TraesCS2B01G068000 chrUn 233285055 233285974 919 False 1051.000000 1051 87.252000 4652 5601 1 chrUn.!!$F2 949
34 TraesCS2B01G068000 chrUn 374625183 374625761 578 True 870.000000 870 93.782000 4652 5230 1 chrUn.!!$R3 578
35 TraesCS2B01G068000 chrUn 236253092 236253670 578 True 865.000000 865 93.610000 4652 5230 1 chrUn.!!$R2 578
36 TraesCS2B01G068000 chrUn 210798683 210799750 1067 False 608.000000 959 89.037500 1932 2912 2 chrUn.!!$F6 980
37 TraesCS2B01G068000 chrUn 147071397 147072467 1070 True 606.500000 961 88.767500 1932 2915 2 chrUn.!!$R6 983
38 TraesCS2B01G068000 chrUn 154083053 154084123 1070 True 606.500000 961 88.767500 1932 2915 2 chrUn.!!$R7 983
39 TraesCS2B01G068000 chrUn 146912853 146913923 1070 True 598.000000 950 88.405000 1932 2915 2 chrUn.!!$R5 983
40 TraesCS2B01G068000 chrUn 154096217 154097287 1070 True 598.000000 950 88.412000 1932 2915 2 chrUn.!!$R8 983
41 TraesCS2B01G068000 chrUn 146897877 146898951 1074 True 592.500000 944 88.107500 1932 2915 2 chrUn.!!$R4 983
42 TraesCS2B01G068000 chr2D 21088455 21089235 780 False 859.000000 859 86.885000 2140 2912 1 chr2D.!!$F1 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 820 0.473694 TGGCATCCCCATATCCGTCT 60.474 55.000 0.0 0.00 39.18 4.18 F
1420 1428 0.033228 CCATTGGCAGTTTTTCCGCA 59.967 50.000 0.0 0.00 0.00 5.69 F
1513 1533 1.136305 GTATCTGCTGTACCCAAGCGA 59.864 52.381 0.0 1.35 0.00 4.93 F
2539 2706 1.148310 ACGCCATGTGAGTTCTTTCG 58.852 50.000 0.0 0.00 0.00 3.46 F
4079 4279 0.917821 TCGTCCCTCCTCCAGGTCTA 60.918 60.000 0.0 0.00 41.51 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 2167 0.185901 TGAGGAAAAGGGCTTGTGCT 59.814 50.000 0.00 0.0 39.59 4.40 R
2924 3110 0.032267 CGGAGCGAAGGGGATTAGTC 59.968 60.000 0.00 0.0 0.00 2.59 R
2925 3111 2.125178 CGGAGCGAAGGGGATTAGT 58.875 57.895 0.00 0.0 0.00 2.24 R
4396 4597 0.248825 CATCGCGCTTCTAGCACTCT 60.249 55.000 5.56 0.0 42.58 3.24 R
5636 5856 0.743688 TGCAAAGTGCCACATTTCGT 59.256 45.000 0.00 0.0 44.23 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
582 583 0.605319 CTAAAGCCCCTCACGTGCAA 60.605 55.000 11.67 0.00 0.00 4.08
726 727 5.248477 AGCCTCTTTTTCTACCAGTGATACA 59.752 40.000 0.00 0.00 0.00 2.29
816 818 1.492133 CCTGGCATCCCCATATCCGT 61.492 60.000 0.00 0.00 44.33 4.69
818 820 0.473694 TGGCATCCCCATATCCGTCT 60.474 55.000 0.00 0.00 39.18 4.18
831 833 7.255977 CCCCATATCCGTCTAAGATGTATATGG 60.256 44.444 16.90 16.90 42.06 2.74
852 854 1.957177 GCTGGATATCAGGAGTGTCGA 59.043 52.381 4.83 0.00 43.54 4.20
888 890 3.846180 CCAGAAATGGGGCATCGG 58.154 61.111 0.00 0.00 0.00 4.18
900 903 0.965363 GGCATCGGGTTGGTGTCATT 60.965 55.000 0.00 0.00 0.00 2.57
905 908 2.656002 TCGGGTTGGTGTCATTTTTCA 58.344 42.857 0.00 0.00 0.00 2.69
911 914 3.980646 TGGTGTCATTTTTCAGTTCCG 57.019 42.857 0.00 0.00 0.00 4.30
912 915 2.621055 TGGTGTCATTTTTCAGTTCCGG 59.379 45.455 0.00 0.00 0.00 5.14
961 964 2.678470 GGCGGTTATGGGGTCCAA 59.322 61.111 0.00 0.00 36.95 3.53
963 966 1.106944 GGCGGTTATGGGGTCCAATG 61.107 60.000 0.00 0.00 36.95 2.82
965 968 0.548989 CGGTTATGGGGTCCAATGGA 59.451 55.000 0.00 0.00 36.95 3.41
1116 1123 5.291614 TCACGTTATAGTATTTTTGGTCGGC 59.708 40.000 0.00 0.00 0.00 5.54
1293 1300 1.135527 CCGTGTTGGCGTAGGATTAGA 59.864 52.381 0.00 0.00 0.00 2.10
1322 1329 6.990349 CACCGGGATATACAGTAGTGAAAAAT 59.010 38.462 6.32 0.00 0.00 1.82
1326 1333 9.273016 CGGGATATACAGTAGTGAAAAATGATT 57.727 33.333 4.09 0.00 0.00 2.57
1339 1346 0.447801 AATGATTTGGTGTCGCTCGC 59.552 50.000 0.00 0.00 0.00 5.03
1344 1351 1.014044 TTTGGTGTCGCTCGCTCATC 61.014 55.000 0.00 0.00 0.00 2.92
1374 1382 4.806330 CAATGTACGACTAGACACCTTGT 58.194 43.478 0.00 0.00 0.00 3.16
1419 1427 2.826277 CCATTGGCAGTTTTTCCGC 58.174 52.632 0.00 0.00 0.00 5.54
1420 1428 0.033228 CCATTGGCAGTTTTTCCGCA 59.967 50.000 0.00 0.00 0.00 5.69
1421 1429 1.421382 CATTGGCAGTTTTTCCGCAG 58.579 50.000 0.00 0.00 0.00 5.18
1441 1449 4.094887 GCAGGTTGCATATACATATTCCCG 59.905 45.833 0.00 0.00 44.26 5.14
1496 1510 2.715046 CCACCACAGTGCAAGATGTAT 58.285 47.619 0.00 0.00 43.09 2.29
1513 1533 1.136305 GTATCTGCTGTACCCAAGCGA 59.864 52.381 0.00 1.35 0.00 4.93
2106 2167 1.468985 CCACCATAATCCACGGCAAA 58.531 50.000 0.00 0.00 0.00 3.68
2123 2184 1.413812 CAAAGCACAAGCCCTTTTCCT 59.586 47.619 0.00 0.00 43.56 3.36
2185 2352 4.820897 CCTCTGCAGTACTGTCATTGTTA 58.179 43.478 23.44 5.81 0.00 2.41
2353 2520 2.418692 CAGTATGGCCGTGTGTACAAA 58.581 47.619 8.05 0.00 0.00 2.83
2528 2695 1.537990 GGTTCAAAGCAAACGCCATGT 60.538 47.619 0.00 0.00 0.00 3.21
2539 2706 1.148310 ACGCCATGTGAGTTCTTTCG 58.852 50.000 0.00 0.00 0.00 3.46
2912 3098 6.884295 TCAAATTCATTATCAAGAACGGAGGT 59.116 34.615 0.00 0.00 0.00 3.85
2915 3101 5.011090 TCATTATCAAGAACGGAGGTCTG 57.989 43.478 0.00 0.00 0.00 3.51
2916 3102 4.709886 TCATTATCAAGAACGGAGGTCTGA 59.290 41.667 0.00 0.00 0.00 3.27
2917 3103 5.186992 TCATTATCAAGAACGGAGGTCTGAA 59.813 40.000 0.00 0.00 0.00 3.02
2918 3104 3.601443 ATCAAGAACGGAGGTCTGAAG 57.399 47.619 0.00 0.00 0.00 3.02
2919 3105 2.594131 TCAAGAACGGAGGTCTGAAGA 58.406 47.619 0.00 0.00 0.00 2.87
2920 3106 2.558795 TCAAGAACGGAGGTCTGAAGAG 59.441 50.000 0.00 0.00 0.00 2.85
2921 3107 2.558795 CAAGAACGGAGGTCTGAAGAGA 59.441 50.000 0.00 0.00 0.00 3.10
2922 3108 3.094484 AGAACGGAGGTCTGAAGAGAT 57.906 47.619 0.00 0.00 0.00 2.75
2923 3109 2.757868 AGAACGGAGGTCTGAAGAGATG 59.242 50.000 0.00 0.00 0.00 2.90
2924 3110 1.479709 ACGGAGGTCTGAAGAGATGG 58.520 55.000 0.00 0.00 0.00 3.51
2925 3111 1.006043 ACGGAGGTCTGAAGAGATGGA 59.994 52.381 0.00 0.00 0.00 3.41
2926 3112 1.407258 CGGAGGTCTGAAGAGATGGAC 59.593 57.143 0.00 0.00 0.00 4.02
2927 3113 2.745968 GGAGGTCTGAAGAGATGGACT 58.254 52.381 0.00 0.00 0.00 3.85
2976 3162 2.056223 CCTCGCCTAGGGTTTCCGA 61.056 63.158 11.72 9.52 42.32 4.55
3092 3280 4.403502 TCCCGTCCCTGTACCCCC 62.404 72.222 0.00 0.00 0.00 5.40
3165 3353 4.767255 CGCGCTCCCAAGCTCCTT 62.767 66.667 5.56 0.00 46.91 3.36
3714 3902 4.794439 CGGGCGTGTCTGATGCGA 62.794 66.667 7.76 0.00 37.48 5.10
4079 4279 0.917821 TCGTCCCTCCTCCAGGTCTA 60.918 60.000 0.00 0.00 41.51 2.59
4175 4375 3.127352 GAGCGCTTCCGATCGTCCT 62.127 63.158 13.26 0.47 40.26 3.85
4445 4646 2.920384 TGGGTGCAGCGGTCACTA 60.920 61.111 10.24 4.74 34.97 2.74
4617 4831 4.649088 AACCCTTTTTCTTGAAGAACGG 57.351 40.909 7.21 8.37 33.26 4.44
4618 4832 3.893521 ACCCTTTTTCTTGAAGAACGGA 58.106 40.909 7.21 0.00 33.26 4.69
4620 4834 3.253432 CCCTTTTTCTTGAAGAACGGAGG 59.747 47.826 7.21 13.64 33.26 4.30
4662 4876 0.313987 CCATATACTGCAGCCGACGA 59.686 55.000 15.27 0.00 0.00 4.20
4708 4922 1.503542 CGCAACCATCACCAGCTTC 59.496 57.895 0.00 0.00 0.00 3.86
4789 5003 2.341101 CGTAGCTGTGGACGGAGGT 61.341 63.158 0.00 0.00 35.43 3.85
4978 5196 3.726557 ATGGAGAAGGACATTGCAGAA 57.273 42.857 0.00 0.00 0.00 3.02
5032 5250 4.106341 CCTTCATACCCCACCAAATAGGAT 59.894 45.833 0.00 0.00 41.22 3.24
5118 5336 8.803235 TGTCCTATGTATAGTTCATATGTGTCC 58.197 37.037 1.90 0.00 0.00 4.02
5119 5337 8.803235 GTCCTATGTATAGTTCATATGTGTCCA 58.197 37.037 1.90 0.00 0.00 4.02
5142 5360 8.852135 TCCATAAGTTGTGTACGATGATGTATA 58.148 33.333 0.00 0.00 30.72 1.47
5315 5533 6.743575 AACATTTGGCTATGTCAAGAGTAC 57.256 37.500 6.34 0.00 37.76 2.73
5414 5633 6.721318 ACTGAAAATTGAAGGCATCCTACTA 58.279 36.000 0.00 0.00 31.13 1.82
5484 5704 6.575267 TCAATCCATTGCAACAAGATTATGG 58.425 36.000 15.99 11.27 37.68 2.74
5505 5725 4.955811 GGAAAACTCCAACTTCCCAAAT 57.044 40.909 0.00 0.00 33.80 2.32
5519 5739 0.600557 CCAAATTGGCCTAACGCACA 59.399 50.000 3.32 0.00 40.31 4.57
5613 5833 7.172868 TGATGTTCATTGGAGTAAAATGCAT 57.827 32.000 0.00 0.00 35.43 3.96
5622 5842 8.627403 CATTGGAGTAAAATGCATAGAATCACT 58.373 33.333 0.00 0.00 0.00 3.41
5623 5843 7.558161 TGGAGTAAAATGCATAGAATCACTG 57.442 36.000 0.00 0.00 0.00 3.66
5624 5844 7.337938 TGGAGTAAAATGCATAGAATCACTGA 58.662 34.615 0.00 0.00 0.00 3.41
5625 5845 7.994911 TGGAGTAAAATGCATAGAATCACTGAT 59.005 33.333 0.00 0.00 0.00 2.90
5626 5846 8.288208 GGAGTAAAATGCATAGAATCACTGATG 58.712 37.037 0.00 0.00 0.00 3.07
5627 5847 8.743085 AGTAAAATGCATAGAATCACTGATGT 57.257 30.769 0.00 0.00 0.00 3.06
5628 5848 8.618677 AGTAAAATGCATAGAATCACTGATGTG 58.381 33.333 0.00 0.00 45.07 3.21
5629 5849 6.387041 AAATGCATAGAATCACTGATGTGG 57.613 37.500 0.00 0.00 43.94 4.17
5630 5850 3.208594 TGCATAGAATCACTGATGTGGC 58.791 45.455 0.00 0.00 43.94 5.01
5631 5851 3.208594 GCATAGAATCACTGATGTGGCA 58.791 45.455 0.00 0.00 43.94 4.92
5632 5852 3.003068 GCATAGAATCACTGATGTGGCAC 59.997 47.826 11.55 11.55 43.94 5.01
5633 5853 4.449131 CATAGAATCACTGATGTGGCACT 58.551 43.478 19.83 4.13 43.94 4.40
5634 5854 3.430042 AGAATCACTGATGTGGCACTT 57.570 42.857 19.83 12.95 43.94 3.16
5635 5855 3.759581 AGAATCACTGATGTGGCACTTT 58.240 40.909 19.83 6.26 43.94 2.66
5636 5856 4.910195 AGAATCACTGATGTGGCACTTTA 58.090 39.130 19.83 8.50 43.94 1.85
5637 5857 4.697352 AGAATCACTGATGTGGCACTTTAC 59.303 41.667 19.83 7.92 43.94 2.01
5638 5858 2.412870 TCACTGATGTGGCACTTTACG 58.587 47.619 19.83 7.50 43.94 3.18
5639 5859 2.036604 TCACTGATGTGGCACTTTACGA 59.963 45.455 19.83 5.72 43.94 3.43
5640 5860 2.805671 CACTGATGTGGCACTTTACGAA 59.194 45.455 19.83 0.00 40.33 3.85
5653 5873 4.440758 CACTTTACGAAATGTGGCACTTTG 59.559 41.667 19.83 11.80 37.20 2.77
5672 5892 1.935873 TGCATAGCAGTGAAGAATCGC 59.064 47.619 0.00 0.00 33.32 4.58
5717 5937 1.214367 TTCTGAGACCGTTTTGACGC 58.786 50.000 0.00 0.00 0.00 5.19
5730 5950 2.434185 GACGCGGCCAATCACTCA 60.434 61.111 12.47 0.00 0.00 3.41
5731 5951 2.740714 GACGCGGCCAATCACTCAC 61.741 63.158 12.47 0.00 0.00 3.51
5732 5952 3.853330 CGCGGCCAATCACTCACG 61.853 66.667 2.24 0.00 0.00 4.35
5741 5961 2.507110 AATCACTCACGGGCCGACAG 62.507 60.000 35.78 27.43 0.00 3.51
5760 5980 4.409218 GGTGACGACACGCCGCTA 62.409 66.667 11.73 0.00 46.77 4.26
5761 5981 2.429571 GTGACGACACGCCGCTAA 60.430 61.111 1.56 0.00 37.28 3.09
5782 6002 2.021722 CCGTTAATGGCCATGTCCG 58.978 57.895 21.63 19.98 0.00 4.79
5837 6057 3.391296 AGCCGTCTATCTCTCTTCTCTCT 59.609 47.826 0.00 0.00 0.00 3.10
5839 6059 3.987868 CCGTCTATCTCTCTTCTCTCTCG 59.012 52.174 0.00 0.00 0.00 4.04
5843 6063 1.011242 CTCTCTTCTCTCTCGCGCG 60.011 63.158 26.76 26.76 0.00 6.86
5846 6066 3.509757 CTTCTCTCTCGCGCGGGA 61.510 66.667 32.87 32.87 0.00 5.14
5863 6083 3.103213 AAGGGCAGTGGTGGTGGT 61.103 61.111 0.00 0.00 0.00 4.16
5864 6084 3.435525 AAGGGCAGTGGTGGTGGTG 62.436 63.158 0.00 0.00 0.00 4.17
5892 6112 0.609131 CAATTGGCGAGGGAGTGGTT 60.609 55.000 0.00 0.00 0.00 3.67
5920 6140 4.379813 GCAAGGTGTGGTGAACATATTCAG 60.380 45.833 0.00 0.00 45.58 3.02
6008 6228 8.340618 TCTTGGAGGAAAATTTGTTGATCTAG 57.659 34.615 0.00 0.00 0.00 2.43
6010 6230 7.452880 TGGAGGAAAATTTGTTGATCTAGTG 57.547 36.000 0.00 0.00 0.00 2.74
6027 6247 3.430042 AGTGTCAAATGATGCTGGTCT 57.570 42.857 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
726 727 2.356741 CCGACCCCACATAAATTGGACT 60.357 50.000 0.00 0.00 36.02 3.85
797 798 1.300963 CGGATATGGGGATGCCAGG 59.699 63.158 5.30 0.00 0.00 4.45
802 803 4.467795 ACATCTTAGACGGATATGGGGATG 59.532 45.833 0.00 0.00 35.57 3.51
803 804 4.689062 ACATCTTAGACGGATATGGGGAT 58.311 43.478 0.00 0.00 0.00 3.85
816 818 8.067488 TGATATCCAGCCCATATACATCTTAGA 58.933 37.037 0.00 0.00 0.00 2.10
818 820 7.290948 CCTGATATCCAGCCCATATACATCTTA 59.709 40.741 0.00 0.00 41.57 2.10
831 833 1.000283 CGACACTCCTGATATCCAGCC 60.000 57.143 0.00 0.00 41.57 4.85
852 854 0.394352 GCCCAAACATCCGGACTGAT 60.394 55.000 6.12 0.00 0.00 2.90
861 863 1.207811 CCCATTTCTGGCCCAAACATC 59.792 52.381 0.00 0.00 41.64 3.06
884 886 3.226777 TGAAAAATGACACCAACCCGAT 58.773 40.909 0.00 0.00 0.00 4.18
887 889 4.368315 GAACTGAAAAATGACACCAACCC 58.632 43.478 0.00 0.00 0.00 4.11
888 890 4.368315 GGAACTGAAAAATGACACCAACC 58.632 43.478 0.00 0.00 0.00 3.77
937 940 1.304547 CCCATAACCGCCCCAAACA 60.305 57.895 0.00 0.00 0.00 2.83
941 944 3.413300 GACCCCATAACCGCCCCA 61.413 66.667 0.00 0.00 0.00 4.96
943 946 2.292785 ATTGGACCCCATAACCGCCC 62.293 60.000 0.00 0.00 31.53 6.13
963 966 9.062620 TCCTTTAAGGGGATTAGAGCATCTTCC 62.063 44.444 11.50 0.00 38.07 3.46
965 968 5.672194 TCCTTTAAGGGGATTAGAGCATCTT 59.328 40.000 11.50 0.00 38.07 2.40
1053 1057 4.584638 AAGGACAACTAATGCCCACATA 57.415 40.909 0.00 0.00 33.15 2.29
1100 1104 4.577283 GCCATTAGCCGACCAAAAATACTA 59.423 41.667 0.00 0.00 34.35 1.82
1116 1123 2.555199 GTGACCTGCACTAGCCATTAG 58.445 52.381 0.00 0.00 44.27 1.73
1200 1207 8.390354 CAACCGATGCTGGTAAATACATATATG 58.610 37.037 11.29 11.29 42.89 1.78
1293 1300 4.583489 CACTACTGTATATCCCGGTGACTT 59.417 45.833 0.00 0.00 0.00 3.01
1322 1329 1.005037 AGCGAGCGACACCAAATCA 60.005 52.632 0.00 0.00 0.00 2.57
1326 1333 1.446099 GATGAGCGAGCGACACCAA 60.446 57.895 0.00 0.00 0.00 3.67
1339 1346 2.284457 CGTACATTGCACGTTCGATGAG 60.284 50.000 20.38 8.61 34.74 2.90
1344 1351 1.057636 AGTCGTACATTGCACGTTCG 58.942 50.000 9.13 7.82 40.27 3.95
1374 1382 1.070134 GAAGCACTGGTGTACTCCACA 59.930 52.381 12.62 0.00 46.44 4.17
1381 1389 2.452116 AGCAGGAAGCACTGGTGTA 58.548 52.632 6.93 0.00 46.46 2.90
1419 1427 4.094887 GCGGGAATATGTATATGCAACCTG 59.905 45.833 0.00 6.00 0.00 4.00
1420 1428 4.261801 GCGGGAATATGTATATGCAACCT 58.738 43.478 0.00 0.00 0.00 3.50
1421 1429 4.006989 TGCGGGAATATGTATATGCAACC 58.993 43.478 0.00 0.09 0.00 3.77
1424 1432 4.260985 CCTTGCGGGAATATGTATATGCA 58.739 43.478 0.00 0.00 37.23 3.96
1434 1442 0.329931 TTCTTGGCCTTGCGGGAATA 59.670 50.000 3.32 0.00 37.23 1.75
1436 1444 1.603455 CTTCTTGGCCTTGCGGGAA 60.603 57.895 3.32 0.00 37.23 3.97
1441 1449 4.426112 GGCGCTTCTTGGCCTTGC 62.426 66.667 7.64 0.00 45.93 4.01
1482 1490 3.268330 ACAGCAGATACATCTTGCACTG 58.732 45.455 12.82 9.77 34.22 3.66
1496 1510 1.185618 AGTCGCTTGGGTACAGCAGA 61.186 55.000 4.74 0.79 0.00 4.26
1513 1533 0.967887 TTCTAGCCAGCGAGCTCAGT 60.968 55.000 15.40 0.00 43.67 3.41
2106 2167 0.185901 TGAGGAAAAGGGCTTGTGCT 59.814 50.000 0.00 0.00 39.59 4.40
2123 2184 2.029486 GCACGTGTACGAAGTTGTTTGA 59.971 45.455 18.38 0.00 37.78 2.69
2353 2520 2.659610 GCCTTCTCAGTGGCGTCT 59.340 61.111 0.00 0.00 39.71 4.18
2472 2639 5.132502 TGGTTGTCTTGAACTCATCATTGT 58.867 37.500 0.00 0.00 38.03 2.71
2528 2695 4.560128 CTGAATCCTGTCGAAAGAACTCA 58.440 43.478 3.47 2.51 45.01 3.41
2539 2706 7.901029 TCATATTCTCATACCTGAATCCTGTC 58.099 38.462 0.00 0.00 35.01 3.51
2923 3109 0.393448 GGAGCGAAGGGGATTAGTCC 59.607 60.000 0.00 0.00 44.29 3.85
2924 3110 0.032267 CGGAGCGAAGGGGATTAGTC 59.968 60.000 0.00 0.00 0.00 2.59
2925 3111 2.125178 CGGAGCGAAGGGGATTAGT 58.875 57.895 0.00 0.00 0.00 2.24
3948 4147 1.379044 GCTTACCAGGCCTGCACAT 60.379 57.895 28.39 14.16 0.00 3.21
3954 4153 1.229658 ACAGGAGCTTACCAGGCCT 60.230 57.895 0.00 0.00 0.00 5.19
3995 4195 2.682494 ACTACCACCACCGCCGAT 60.682 61.111 0.00 0.00 0.00 4.18
4079 4279 4.363990 CGCTGAGCCACCGACACT 62.364 66.667 0.00 0.00 0.00 3.55
4102 4302 1.800586 CAGTCACTGAACCATCAACGG 59.199 52.381 0.00 0.00 34.49 4.44
4175 4375 0.972983 CAAACAACCACCACCACCCA 60.973 55.000 0.00 0.00 0.00 4.51
4396 4597 0.248825 CATCGCGCTTCTAGCACTCT 60.249 55.000 5.56 0.00 42.58 3.24
4413 4614 0.252558 ACCCACCGGAGAAGTACCAT 60.253 55.000 9.46 0.00 0.00 3.55
4445 4646 2.293399 GGTTGACGAAACAAAGATGGCT 59.707 45.455 7.78 0.00 40.86 4.75
4611 4825 0.898320 CATGGTCAGACCTCCGTTCT 59.102 55.000 20.82 0.00 39.58 3.01
4614 4828 0.972983 CTCCATGGTCAGACCTCCGT 60.973 60.000 20.82 1.61 39.58 4.69
4615 4829 0.972983 ACTCCATGGTCAGACCTCCG 60.973 60.000 20.82 8.60 39.58 4.63
4617 4831 0.827368 GGACTCCATGGTCAGACCTC 59.173 60.000 20.82 8.32 39.58 3.85
4618 4832 0.117140 TGGACTCCATGGTCAGACCT 59.883 55.000 20.82 3.50 39.58 3.85
4620 4834 0.107945 GCTGGACTCCATGGTCAGAC 60.108 60.000 21.82 11.17 37.91 3.51
4662 4876 0.610232 GGATCCAGCCTTGCACTTGT 60.610 55.000 6.95 0.00 0.00 3.16
4703 4917 1.220206 CAGGCACATCCTCGAAGCT 59.780 57.895 0.00 0.00 45.52 3.74
4708 4922 0.179048 TATTGGCAGGCACATCCTCG 60.179 55.000 0.00 0.00 45.52 4.63
4789 5003 6.820152 CAGAGTAGAATTGGAATGTCATGTCA 59.180 38.462 0.00 0.00 0.00 3.58
4978 5196 1.145738 AGACCACACATGCCCTTCTTT 59.854 47.619 0.00 0.00 0.00 2.52
5032 5250 3.448093 TTAGGTGGCATTTGGTGATCA 57.552 42.857 0.00 0.00 0.00 2.92
5231 5449 5.975693 ATTCTTAATCTGACCCGCAAAAA 57.024 34.783 0.00 0.00 0.00 1.94
5232 5450 5.975693 AATTCTTAATCTGACCCGCAAAA 57.024 34.783 0.00 0.00 0.00 2.44
5233 5451 6.601613 ACATAATTCTTAATCTGACCCGCAAA 59.398 34.615 0.00 0.00 0.00 3.68
5234 5452 6.119536 ACATAATTCTTAATCTGACCCGCAA 58.880 36.000 0.00 0.00 0.00 4.85
5235 5453 5.680619 ACATAATTCTTAATCTGACCCGCA 58.319 37.500 0.00 0.00 0.00 5.69
5236 5454 6.260050 TCAACATAATTCTTAATCTGACCCGC 59.740 38.462 0.00 0.00 0.00 6.13
5237 5455 7.786178 TCAACATAATTCTTAATCTGACCCG 57.214 36.000 0.00 0.00 0.00 5.28
5354 5573 7.394923 ACATTCCAATAAATACCGAAAAGACCA 59.605 33.333 0.00 0.00 0.00 4.02
5414 5633 8.596781 AGTATTCTCTAGTGGTACAAATCACT 57.403 34.615 7.51 7.51 44.16 3.41
5484 5704 4.955811 ATTTGGGAAGTTGGAGTTTTCC 57.044 40.909 0.00 0.00 44.31 3.13
5505 5725 1.448922 GGTGTTGTGCGTTAGGCCAA 61.449 55.000 5.01 0.00 42.61 4.52
5622 5842 3.818210 ACATTTCGTAAAGTGCCACATCA 59.182 39.130 0.00 0.00 0.00 3.07
5623 5843 4.158384 CACATTTCGTAAAGTGCCACATC 58.842 43.478 0.00 0.00 0.00 3.06
5624 5844 3.057596 CCACATTTCGTAAAGTGCCACAT 60.058 43.478 4.81 0.00 0.00 3.21
5625 5845 2.292016 CCACATTTCGTAAAGTGCCACA 59.708 45.455 4.81 0.00 0.00 4.17
5626 5846 2.920647 GCCACATTTCGTAAAGTGCCAC 60.921 50.000 4.81 0.00 0.00 5.01
5627 5847 1.268352 GCCACATTTCGTAAAGTGCCA 59.732 47.619 4.81 0.00 0.00 4.92
5628 5848 1.268352 TGCCACATTTCGTAAAGTGCC 59.732 47.619 4.81 0.00 0.00 5.01
5629 5849 2.031157 AGTGCCACATTTCGTAAAGTGC 60.031 45.455 4.81 2.30 0.00 4.40
5630 5850 3.896648 AGTGCCACATTTCGTAAAGTG 57.103 42.857 0.00 3.49 0.00 3.16
5631 5851 4.606961 CAAAGTGCCACATTTCGTAAAGT 58.393 39.130 0.00 0.00 0.00 2.66
5632 5852 3.425193 GCAAAGTGCCACATTTCGTAAAG 59.575 43.478 0.00 0.00 37.42 1.85
5633 5853 3.181486 TGCAAAGTGCCACATTTCGTAAA 60.181 39.130 0.00 0.00 44.23 2.01
5634 5854 2.359214 TGCAAAGTGCCACATTTCGTAA 59.641 40.909 0.00 0.00 44.23 3.18
5635 5855 1.950216 TGCAAAGTGCCACATTTCGTA 59.050 42.857 0.00 0.00 44.23 3.43
5636 5856 0.743688 TGCAAAGTGCCACATTTCGT 59.256 45.000 0.00 0.00 44.23 3.85
5637 5857 2.068837 ATGCAAAGTGCCACATTTCG 57.931 45.000 0.00 0.00 44.23 3.46
5638 5858 2.925563 GCTATGCAAAGTGCCACATTTC 59.074 45.455 0.00 0.00 44.23 2.17
5639 5859 2.299582 TGCTATGCAAAGTGCCACATTT 59.700 40.909 0.00 0.00 44.23 2.32
5640 5860 1.894466 TGCTATGCAAAGTGCCACATT 59.106 42.857 0.00 0.00 44.23 2.71
5653 5873 1.262683 GGCGATTCTTCACTGCTATGC 59.737 52.381 0.00 0.00 0.00 3.14
5662 5882 4.301505 GCCACTGGCGATTCTTCA 57.698 55.556 3.73 0.00 39.62 3.02
5717 5937 2.819595 CCCGTGAGTGATTGGCCG 60.820 66.667 0.00 0.00 0.00 6.13
5721 5941 2.100631 GTCGGCCCGTGAGTGATTG 61.101 63.158 1.63 0.00 0.00 2.67
5722 5942 2.264794 GTCGGCCCGTGAGTGATT 59.735 61.111 1.63 0.00 0.00 2.57
5755 5975 2.317230 CCATTAACGGCCTTAGCGG 58.683 57.895 0.00 0.00 44.47 5.52
5775 5995 2.334946 CCCAACCACTGCGGACATG 61.335 63.158 0.00 0.00 38.63 3.21
5776 5996 2.034066 CCCAACCACTGCGGACAT 59.966 61.111 0.00 0.00 38.63 3.06
5800 6020 0.833834 CGGCTAGGGATGGGAGTGAT 60.834 60.000 0.00 0.00 0.00 3.06
5843 6063 3.580319 ACCACCACTGCCCTTCCC 61.580 66.667 0.00 0.00 0.00 3.97
5846 6066 3.103213 ACCACCACCACTGCCCTT 61.103 61.111 0.00 0.00 0.00 3.95
5863 6083 1.819208 CGCCAATTGATCCGAGCCA 60.819 57.895 7.12 0.00 0.00 4.75
5864 6084 1.502163 CTCGCCAATTGATCCGAGCC 61.502 60.000 21.35 0.00 40.35 4.70
5892 6112 1.640593 TTCACCACACCTTGCTCCCA 61.641 55.000 0.00 0.00 0.00 4.37
6008 6228 4.871993 CTAGACCAGCATCATTTGACAC 57.128 45.455 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.