Multiple sequence alignment - TraesCS2B01G066900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G066900 chr2B 100.000 3584 0 0 1 3584 33727362 33730945 0.000000e+00 6619
1 TraesCS2B01G066900 chr2B 94.257 2159 114 6 1348 3497 33579708 33577551 0.000000e+00 3291
2 TraesCS2B01G066900 chr2B 90.116 1720 156 9 970 2680 33663023 33664737 0.000000e+00 2222
3 TraesCS2B01G066900 chr2B 97.988 646 12 1 2853 3497 33800459 33801104 0.000000e+00 1120
4 TraesCS2B01G066900 chr2B 97.753 89 2 0 3496 3584 77778081 77777993 1.720000e-33 154
5 TraesCS2B01G066900 chr2B 98.795 83 1 0 3502 3584 178455355 178455273 8.020000e-32 148
6 TraesCS2B01G066900 chr2D 91.153 2464 183 15 366 2820 20380479 20382916 0.000000e+00 3310
7 TraesCS2B01G066900 chr2D 90.454 1718 151 8 972 2680 20324746 20323033 0.000000e+00 2252
8 TraesCS2B01G066900 chr2D 85.164 1712 240 8 979 2682 20189082 20187377 0.000000e+00 1742
9 TraesCS2B01G066900 chr2D 88.153 287 32 2 85 369 317851421 317851707 1.230000e-89 340
10 TraesCS2B01G066900 chr2D 93.333 90 3 3 1 88 305563627 305563715 2.900000e-26 130
11 TraesCS2B01G066900 chr2A 90.819 2124 150 15 726 2820 21006919 21004812 0.000000e+00 2800
12 TraesCS2B01G066900 chr2A 89.895 1722 159 9 970 2680 21177351 21179068 0.000000e+00 2202
13 TraesCS2B01G066900 chr2A 85.890 1708 229 7 979 2679 21191610 21193312 0.000000e+00 1808
14 TraesCS2B01G066900 chr2A 86.603 1575 205 3 1006 2580 21148240 21149808 0.000000e+00 1735
15 TraesCS2B01G066900 chr2A 86.455 347 38 4 369 711 21007246 21006905 4.370000e-99 372
16 TraesCS2B01G066900 chr2A 98.795 83 1 0 3502 3584 519547341 519547423 8.020000e-32 148
17 TraesCS2B01G066900 chr2A 94.624 93 3 1 3492 3584 604995965 604995875 3.730000e-30 143
18 TraesCS2B01G066900 chr2A 93.258 89 4 2 1 88 412605816 412605729 2.900000e-26 130
19 TraesCS2B01G066900 chr7B 78.472 1505 281 24 1087 2586 502316817 502318283 0.000000e+00 944
20 TraesCS2B01G066900 chr7B 77.090 646 123 18 1124 1761 25339294 25339922 2.050000e-92 350
21 TraesCS2B01G066900 chr7B 88.621 290 30 3 87 373 226051299 226051010 2.050000e-92 350
22 TraesCS2B01G066900 chr7B 98.810 84 1 0 3501 3584 593909224 593909307 2.230000e-32 150
23 TraesCS2B01G066900 chr7D 78.287 1506 282 29 1087 2586 477659315 477660781 0.000000e+00 928
24 TraesCS2B01G066900 chr7D 75.084 895 185 28 1136 2017 477641789 477642658 2.020000e-102 383
25 TraesCS2B01G066900 chr7D 75.290 862 172 34 1143 1988 78115637 78116473 1.220000e-99 374
26 TraesCS2B01G066900 chr7D 88.316 291 32 2 85 373 296026544 296026254 7.360000e-92 348
27 TraesCS2B01G066900 chr7D 88.462 286 31 2 86 369 188999127 188999412 9.530000e-91 344
28 TraesCS2B01G066900 chr4B 88.621 290 31 2 86 373 29604988 29604699 5.690000e-93 351
29 TraesCS2B01G066900 chr4B 87.889 289 33 2 86 372 66481193 66481481 4.430000e-89 339
30 TraesCS2B01G066900 chr4B 93.258 89 5 1 1 88 515870951 515871039 2.900000e-26 130
31 TraesCS2B01G066900 chr3D 88.581 289 31 2 84 370 302308662 302308950 2.050000e-92 350
32 TraesCS2B01G066900 chr3D 95.506 89 3 1 1 88 459518114 459518026 1.340000e-29 141
33 TraesCS2B01G066900 chr5B 88.194 288 33 1 86 372 593705212 593705499 3.430000e-90 342
34 TraesCS2B01G066900 chr5B 98.795 83 1 0 3502 3584 660346578 660346496 8.020000e-32 148
35 TraesCS2B01G066900 chr5B 95.506 89 3 1 1 88 232939717 232939629 1.340000e-29 141
36 TraesCS2B01G066900 chr4D 87.889 289 33 2 86 372 106383982 106384270 4.430000e-89 339
37 TraesCS2B01G066900 chr4D 93.407 91 3 1 1 88 91110872 91110962 8.070000e-27 132
38 TraesCS2B01G066900 chr3B 97.778 90 2 0 3495 3584 636770606 636770517 4.790000e-34 156
39 TraesCS2B01G066900 chr3B 93.814 97 4 2 3490 3584 754171316 754171220 1.040000e-30 145
40 TraesCS2B01G066900 chr6B 97.701 87 2 0 3498 3584 33508520 33508434 2.230000e-32 150
41 TraesCS2B01G066900 chr1A 95.506 89 3 1 1 88 439566171 439566083 1.340000e-29 141
42 TraesCS2B01G066900 chr1D 93.333 90 3 2 1 88 95580234 95580322 2.900000e-26 130
43 TraesCS2B01G066900 chr6D 92.222 90 5 1 1 88 321652739 321652650 3.760000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G066900 chr2B 33727362 33730945 3583 False 6619 6619 100.000 1 3584 1 chr2B.!!$F2 3583
1 TraesCS2B01G066900 chr2B 33577551 33579708 2157 True 3291 3291 94.257 1348 3497 1 chr2B.!!$R1 2149
2 TraesCS2B01G066900 chr2B 33663023 33664737 1714 False 2222 2222 90.116 970 2680 1 chr2B.!!$F1 1710
3 TraesCS2B01G066900 chr2B 33800459 33801104 645 False 1120 1120 97.988 2853 3497 1 chr2B.!!$F3 644
4 TraesCS2B01G066900 chr2D 20380479 20382916 2437 False 3310 3310 91.153 366 2820 1 chr2D.!!$F1 2454
5 TraesCS2B01G066900 chr2D 20323033 20324746 1713 True 2252 2252 90.454 972 2680 1 chr2D.!!$R2 1708
6 TraesCS2B01G066900 chr2D 20187377 20189082 1705 True 1742 1742 85.164 979 2682 1 chr2D.!!$R1 1703
7 TraesCS2B01G066900 chr2A 21177351 21179068 1717 False 2202 2202 89.895 970 2680 1 chr2A.!!$F2 1710
8 TraesCS2B01G066900 chr2A 21191610 21193312 1702 False 1808 1808 85.890 979 2679 1 chr2A.!!$F3 1700
9 TraesCS2B01G066900 chr2A 21148240 21149808 1568 False 1735 1735 86.603 1006 2580 1 chr2A.!!$F1 1574
10 TraesCS2B01G066900 chr2A 21004812 21007246 2434 True 1586 2800 88.637 369 2820 2 chr2A.!!$R3 2451
11 TraesCS2B01G066900 chr7B 502316817 502318283 1466 False 944 944 78.472 1087 2586 1 chr7B.!!$F2 1499
12 TraesCS2B01G066900 chr7B 25339294 25339922 628 False 350 350 77.090 1124 1761 1 chr7B.!!$F1 637
13 TraesCS2B01G066900 chr7D 477659315 477660781 1466 False 928 928 78.287 1087 2586 1 chr7D.!!$F4 1499
14 TraesCS2B01G066900 chr7D 477641789 477642658 869 False 383 383 75.084 1136 2017 1 chr7D.!!$F3 881
15 TraesCS2B01G066900 chr7D 78115637 78116473 836 False 374 374 75.290 1143 1988 1 chr7D.!!$F1 845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
968 976 0.031585 GCACCGTGTCAGTGTCAGTA 59.968 55.0 0.00 0.00 37.56 2.74 F
1338 1354 0.616111 ACGACAATGAGGGCCTCTCT 60.616 55.0 32.28 18.01 42.86 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2445 2478 1.944024 CACACCTTGGCAGTTTCGTAA 59.056 47.619 0.0 0.0 0.0 3.18 R
3120 3188 2.104792 TCTCAGCTTGGCACATATACCC 59.895 50.000 0.0 0.0 39.3 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 9.877178 ACTCGATAAAACTGAAAATATGACTCT 57.123 29.630 0.00 0.00 0.00 3.24
83 84 6.522625 TGACTCTATATGAATGCCTCTAGC 57.477 41.667 0.00 0.00 44.14 3.42
99 100 4.701663 GCAGTGGCTGAGCTACAA 57.298 55.556 22.84 0.00 42.47 2.41
100 101 2.464682 GCAGTGGCTGAGCTACAAG 58.535 57.895 22.84 15.17 42.47 3.16
101 102 0.321122 GCAGTGGCTGAGCTACAAGT 60.321 55.000 22.84 0.00 42.47 3.16
102 103 1.066858 GCAGTGGCTGAGCTACAAGTA 60.067 52.381 22.84 0.00 42.47 2.24
103 104 2.612972 GCAGTGGCTGAGCTACAAGTAA 60.613 50.000 22.84 0.00 42.47 2.24
104 105 3.866651 CAGTGGCTGAGCTACAAGTAAT 58.133 45.455 22.84 0.00 42.47 1.89
105 106 4.680708 GCAGTGGCTGAGCTACAAGTAATA 60.681 45.833 22.84 0.00 42.47 0.98
106 107 5.605534 CAGTGGCTGAGCTACAAGTAATAT 58.394 41.667 22.84 0.00 42.47 1.28
107 108 5.464722 CAGTGGCTGAGCTACAAGTAATATG 59.535 44.000 22.84 5.98 42.47 1.78
108 109 5.129485 AGTGGCTGAGCTACAAGTAATATGT 59.871 40.000 22.84 0.00 42.47 2.29
109 110 5.463724 GTGGCTGAGCTACAAGTAATATGTC 59.536 44.000 16.37 0.00 39.80 3.06
110 111 5.128663 TGGCTGAGCTACAAGTAATATGTCA 59.871 40.000 3.72 0.00 32.27 3.58
111 112 5.694006 GGCTGAGCTACAAGTAATATGTCAG 59.306 44.000 3.72 0.00 32.27 3.51
112 113 5.176590 GCTGAGCTACAAGTAATATGTCAGC 59.823 44.000 0.00 4.88 37.58 4.26
113 114 6.471233 TGAGCTACAAGTAATATGTCAGCT 57.529 37.500 0.00 0.00 38.86 4.24
114 115 7.582667 TGAGCTACAAGTAATATGTCAGCTA 57.417 36.000 0.00 0.00 37.61 3.32
115 116 8.183104 TGAGCTACAAGTAATATGTCAGCTAT 57.817 34.615 0.00 0.00 37.61 2.97
116 117 9.297037 TGAGCTACAAGTAATATGTCAGCTATA 57.703 33.333 0.00 0.00 37.61 1.31
130 131 7.137490 TGTCAGCTATATGATAATGCAAAGC 57.863 36.000 0.00 0.00 0.00 3.51
131 132 6.711645 TGTCAGCTATATGATAATGCAAAGCA 59.288 34.615 0.00 0.00 44.86 3.91
132 133 7.229106 TGTCAGCTATATGATAATGCAAAGCAA 59.771 33.333 0.00 0.00 43.62 3.91
133 134 8.242053 GTCAGCTATATGATAATGCAAAGCAAT 58.758 33.333 0.00 0.00 43.62 3.56
134 135 9.452287 TCAGCTATATGATAATGCAAAGCAATA 57.548 29.630 0.00 0.00 43.62 1.90
143 144 9.819267 TGATAATGCAAAGCAATATGAAAATGA 57.181 25.926 4.45 0.00 43.62 2.57
146 147 6.971527 TGCAAAGCAATATGAAAATGAAGG 57.028 33.333 0.00 0.00 34.76 3.46
147 148 6.465948 TGCAAAGCAATATGAAAATGAAGGT 58.534 32.000 0.00 0.00 34.76 3.50
148 149 6.935771 TGCAAAGCAATATGAAAATGAAGGTT 59.064 30.769 0.00 0.00 34.76 3.50
149 150 7.444792 TGCAAAGCAATATGAAAATGAAGGTTT 59.555 29.630 0.00 0.00 34.76 3.27
150 151 8.934825 GCAAAGCAATATGAAAATGAAGGTTTA 58.065 29.630 0.00 0.00 0.00 2.01
172 173 8.818141 TTTATGAAATAAAAATGAACGGTGCA 57.182 26.923 0.00 0.00 45.14 4.57
173 174 8.818141 TTATGAAATAAAAATGAACGGTGCAA 57.182 26.923 0.00 0.00 35.49 4.08
174 175 6.761731 TGAAATAAAAATGAACGGTGCAAG 57.238 33.333 0.00 0.00 0.00 4.01
175 176 6.276847 TGAAATAAAAATGAACGGTGCAAGT 58.723 32.000 0.00 0.00 0.00 3.16
176 177 6.758886 TGAAATAAAAATGAACGGTGCAAGTT 59.241 30.769 8.36 8.36 34.07 2.66
177 178 6.523676 AATAAAAATGAACGGTGCAAGTTG 57.476 33.333 12.77 0.00 31.14 3.16
178 179 1.851658 AAATGAACGGTGCAAGTTGC 58.148 45.000 21.17 21.17 45.29 4.17
194 195 7.085797 GCAAGTTGCATGACAATATATTTCG 57.914 36.000 22.90 0.00 44.26 3.46
195 196 6.142798 GCAAGTTGCATGACAATATATTTCGG 59.857 38.462 22.90 0.00 44.26 4.30
196 197 7.416817 CAAGTTGCATGACAATATATTTCGGA 58.583 34.615 0.00 0.00 41.27 4.55
197 198 7.566760 AGTTGCATGACAATATATTTCGGAA 57.433 32.000 0.00 0.00 41.27 4.30
198 199 8.169977 AGTTGCATGACAATATATTTCGGAAT 57.830 30.769 0.00 0.00 41.27 3.01
199 200 8.077991 AGTTGCATGACAATATATTTCGGAATG 58.922 33.333 0.00 0.00 41.27 2.67
200 201 6.912082 TGCATGACAATATATTTCGGAATGG 58.088 36.000 0.00 0.00 0.00 3.16
201 202 5.801947 GCATGACAATATATTTCGGAATGGC 59.198 40.000 0.00 0.00 0.00 4.40
202 203 6.349611 GCATGACAATATATTTCGGAATGGCT 60.350 38.462 0.00 0.00 0.00 4.75
203 204 7.148255 GCATGACAATATATTTCGGAATGGCTA 60.148 37.037 0.00 0.00 0.00 3.93
204 205 8.896744 CATGACAATATATTTCGGAATGGCTAT 58.103 33.333 0.00 0.00 0.00 2.97
205 206 8.267620 TGACAATATATTTCGGAATGGCTATG 57.732 34.615 0.00 0.00 0.00 2.23
206 207 8.100164 TGACAATATATTTCGGAATGGCTATGA 58.900 33.333 0.00 0.00 0.00 2.15
207 208 8.862325 ACAATATATTTCGGAATGGCTATGAA 57.138 30.769 0.00 0.00 0.00 2.57
208 209 9.295825 ACAATATATTTCGGAATGGCTATGAAA 57.704 29.630 0.00 0.00 33.56 2.69
212 213 3.988379 TCGGAATGGCTATGAAAATGC 57.012 42.857 0.00 0.00 0.00 3.56
213 214 2.622942 TCGGAATGGCTATGAAAATGCC 59.377 45.455 0.00 0.00 46.26 4.40
223 224 7.559590 GGCTATGAAAATGCCATATAGGTAG 57.440 40.000 0.00 0.00 45.46 3.18
224 225 6.543831 GGCTATGAAAATGCCATATAGGTAGG 59.456 42.308 0.00 0.00 45.46 3.18
225 226 7.112779 GCTATGAAAATGCCATATAGGTAGGT 58.887 38.462 0.00 0.00 40.61 3.08
226 227 8.265055 GCTATGAAAATGCCATATAGGTAGGTA 58.735 37.037 0.00 0.00 40.61 3.08
229 230 7.402054 TGAAAATGCCATATAGGTAGGTATGG 58.598 38.462 6.97 6.97 46.54 2.74
230 231 6.970165 AAATGCCATATAGGTAGGTATGGT 57.030 37.500 11.73 0.00 45.87 3.55
231 232 5.957771 ATGCCATATAGGTAGGTATGGTG 57.042 43.478 11.73 0.00 45.87 4.17
232 233 4.101114 TGCCATATAGGTAGGTATGGTGG 58.899 47.826 11.73 0.00 45.87 4.61
233 234 4.202847 TGCCATATAGGTAGGTATGGTGGA 60.203 45.833 11.73 0.00 45.87 4.02
234 235 4.969359 GCCATATAGGTAGGTATGGTGGAT 59.031 45.833 11.73 0.00 45.87 3.41
235 236 5.163301 GCCATATAGGTAGGTATGGTGGATG 60.163 48.000 11.73 0.00 45.87 3.51
236 237 5.964477 CCATATAGGTAGGTATGGTGGATGT 59.036 44.000 3.77 0.00 41.47 3.06
237 238 6.443849 CCATATAGGTAGGTATGGTGGATGTT 59.556 42.308 3.77 0.00 41.47 2.71
238 239 7.037586 CCATATAGGTAGGTATGGTGGATGTTT 60.038 40.741 3.77 0.00 41.47 2.83
239 240 6.841781 ATAGGTAGGTATGGTGGATGTTTT 57.158 37.500 0.00 0.00 0.00 2.43
240 241 4.855340 AGGTAGGTATGGTGGATGTTTTG 58.145 43.478 0.00 0.00 0.00 2.44
241 242 3.951680 GGTAGGTATGGTGGATGTTTTGG 59.048 47.826 0.00 0.00 0.00 3.28
242 243 3.100207 AGGTATGGTGGATGTTTTGGG 57.900 47.619 0.00 0.00 0.00 4.12
243 244 2.107366 GGTATGGTGGATGTTTTGGGG 58.893 52.381 0.00 0.00 0.00 4.96
244 245 2.291930 GGTATGGTGGATGTTTTGGGGA 60.292 50.000 0.00 0.00 0.00 4.81
245 246 2.711895 ATGGTGGATGTTTTGGGGAA 57.288 45.000 0.00 0.00 0.00 3.97
246 247 2.008242 TGGTGGATGTTTTGGGGAAG 57.992 50.000 0.00 0.00 0.00 3.46
247 248 1.266178 GGTGGATGTTTTGGGGAAGG 58.734 55.000 0.00 0.00 0.00 3.46
248 249 1.482365 GGTGGATGTTTTGGGGAAGGT 60.482 52.381 0.00 0.00 0.00 3.50
249 250 2.225167 GGTGGATGTTTTGGGGAAGGTA 60.225 50.000 0.00 0.00 0.00 3.08
250 251 3.565670 GGTGGATGTTTTGGGGAAGGTAT 60.566 47.826 0.00 0.00 0.00 2.73
251 252 4.325501 GGTGGATGTTTTGGGGAAGGTATA 60.326 45.833 0.00 0.00 0.00 1.47
252 253 5.265989 GTGGATGTTTTGGGGAAGGTATAA 58.734 41.667 0.00 0.00 0.00 0.98
253 254 5.359860 GTGGATGTTTTGGGGAAGGTATAAG 59.640 44.000 0.00 0.00 0.00 1.73
254 255 4.893524 GGATGTTTTGGGGAAGGTATAAGG 59.106 45.833 0.00 0.00 0.00 2.69
255 256 5.340528 GGATGTTTTGGGGAAGGTATAAGGA 60.341 44.000 0.00 0.00 0.00 3.36
256 257 5.187621 TGTTTTGGGGAAGGTATAAGGAG 57.812 43.478 0.00 0.00 0.00 3.69
257 258 4.017867 TGTTTTGGGGAAGGTATAAGGAGG 60.018 45.833 0.00 0.00 0.00 4.30
258 259 1.815757 TGGGGAAGGTATAAGGAGGC 58.184 55.000 0.00 0.00 0.00 4.70
259 260 1.297141 TGGGGAAGGTATAAGGAGGCT 59.703 52.381 0.00 0.00 0.00 4.58
260 261 2.294263 TGGGGAAGGTATAAGGAGGCTT 60.294 50.000 0.00 0.00 0.00 4.35
261 262 3.050876 TGGGGAAGGTATAAGGAGGCTTA 60.051 47.826 0.00 0.00 0.00 3.09
262 263 4.176753 GGGGAAGGTATAAGGAGGCTTAT 58.823 47.826 0.00 0.00 34.34 1.73
263 264 4.019231 GGGGAAGGTATAAGGAGGCTTATG 60.019 50.000 0.00 0.00 32.44 1.90
264 265 4.597940 GGGAAGGTATAAGGAGGCTTATGT 59.402 45.833 0.00 0.00 32.44 2.29
265 266 5.513267 GGGAAGGTATAAGGAGGCTTATGTG 60.513 48.000 0.00 0.00 32.44 3.21
266 267 5.071923 GGAAGGTATAAGGAGGCTTATGTGT 59.928 44.000 0.00 0.00 32.44 3.72
267 268 5.552870 AGGTATAAGGAGGCTTATGTGTG 57.447 43.478 0.00 0.00 32.44 3.82
268 269 5.216622 AGGTATAAGGAGGCTTATGTGTGA 58.783 41.667 0.00 0.00 32.44 3.58
269 270 5.846714 AGGTATAAGGAGGCTTATGTGTGAT 59.153 40.000 0.00 0.00 32.44 3.06
270 271 7.016914 AGGTATAAGGAGGCTTATGTGTGATA 58.983 38.462 0.00 0.00 32.44 2.15
271 272 7.179338 AGGTATAAGGAGGCTTATGTGTGATAG 59.821 40.741 0.00 0.00 32.44 2.08
272 273 7.178628 GGTATAAGGAGGCTTATGTGTGATAGA 59.821 40.741 0.00 0.00 32.44 1.98
273 274 5.543507 AAGGAGGCTTATGTGTGATAGAG 57.456 43.478 0.00 0.00 0.00 2.43
274 275 3.323403 AGGAGGCTTATGTGTGATAGAGC 59.677 47.826 0.00 0.00 0.00 4.09
275 276 3.070159 GGAGGCTTATGTGTGATAGAGCA 59.930 47.826 0.00 0.00 32.01 4.26
276 277 4.262808 GGAGGCTTATGTGTGATAGAGCAT 60.263 45.833 0.00 0.00 32.01 3.79
277 278 5.047021 GGAGGCTTATGTGTGATAGAGCATA 60.047 44.000 0.00 0.00 32.01 3.14
278 279 6.351711 GGAGGCTTATGTGTGATAGAGCATAT 60.352 42.308 0.00 0.00 32.01 1.78
279 280 6.638610 AGGCTTATGTGTGATAGAGCATATC 58.361 40.000 2.78 2.78 32.01 1.63
280 281 6.212187 AGGCTTATGTGTGATAGAGCATATCA 59.788 38.462 7.38 7.38 32.01 2.15
281 282 7.046652 GGCTTATGTGTGATAGAGCATATCAT 58.953 38.462 12.99 2.76 36.48 2.45
282 283 7.224362 GGCTTATGTGTGATAGAGCATATCATC 59.776 40.741 12.99 10.48 36.48 2.92
283 284 7.980662 GCTTATGTGTGATAGAGCATATCATCT 59.019 37.037 12.99 0.00 36.48 2.90
284 285 9.518906 CTTATGTGTGATAGAGCATATCATCTC 57.481 37.037 12.99 9.21 36.48 2.75
285 286 6.906157 TGTGTGATAGAGCATATCATCTCA 57.094 37.500 12.99 10.90 36.48 3.27
286 287 6.685657 TGTGTGATAGAGCATATCATCTCAC 58.314 40.000 12.99 14.91 38.58 3.51
287 288 5.799435 GTGTGATAGAGCATATCATCTCACG 59.201 44.000 12.99 0.00 36.45 4.35
288 289 5.105997 TGTGATAGAGCATATCATCTCACGG 60.106 44.000 12.99 0.00 36.45 4.94
289 290 4.400567 TGATAGAGCATATCATCTCACGGG 59.599 45.833 7.38 0.00 0.00 5.28
290 291 1.898472 AGAGCATATCATCTCACGGGG 59.102 52.381 0.00 0.00 0.00 5.73
291 292 1.620819 GAGCATATCATCTCACGGGGT 59.379 52.381 0.00 0.00 0.00 4.95
292 293 2.037772 GAGCATATCATCTCACGGGGTT 59.962 50.000 0.00 0.00 0.00 4.11
293 294 2.439507 AGCATATCATCTCACGGGGTTT 59.560 45.455 0.00 0.00 0.00 3.27
294 295 2.549754 GCATATCATCTCACGGGGTTTG 59.450 50.000 0.00 0.00 0.00 2.93
295 296 3.744214 GCATATCATCTCACGGGGTTTGA 60.744 47.826 0.00 0.00 0.00 2.69
296 297 4.450976 CATATCATCTCACGGGGTTTGAA 58.549 43.478 0.00 0.00 0.00 2.69
297 298 3.652057 ATCATCTCACGGGGTTTGAAT 57.348 42.857 0.00 0.00 0.00 2.57
298 299 2.710377 TCATCTCACGGGGTTTGAATG 58.290 47.619 0.00 0.00 0.00 2.67
299 300 1.133025 CATCTCACGGGGTTTGAATGC 59.867 52.381 0.00 0.00 0.00 3.56
300 301 0.109532 TCTCACGGGGTTTGAATGCA 59.890 50.000 0.00 0.00 0.00 3.96
301 302 0.240945 CTCACGGGGTTTGAATGCAC 59.759 55.000 0.00 0.00 0.00 4.57
302 303 1.175983 TCACGGGGTTTGAATGCACC 61.176 55.000 0.00 0.00 0.00 5.01
303 304 2.265182 ACGGGGTTTGAATGCACCG 61.265 57.895 8.96 8.96 46.16 4.94
304 305 1.969064 CGGGGTTTGAATGCACCGA 60.969 57.895 5.22 0.00 43.69 4.69
305 306 1.584495 GGGGTTTGAATGCACCGAC 59.416 57.895 0.00 0.00 33.34 4.79
306 307 1.209127 GGGTTTGAATGCACCGACG 59.791 57.895 0.00 0.00 33.34 5.12
307 308 1.231958 GGGTTTGAATGCACCGACGA 61.232 55.000 0.00 0.00 33.34 4.20
308 309 0.589223 GGTTTGAATGCACCGACGAA 59.411 50.000 0.00 0.00 0.00 3.85
309 310 1.002251 GGTTTGAATGCACCGACGAAA 60.002 47.619 0.00 0.00 0.00 3.46
310 311 2.351350 GGTTTGAATGCACCGACGAAAT 60.351 45.455 0.00 0.00 0.00 2.17
311 312 3.305110 GTTTGAATGCACCGACGAAATT 58.695 40.909 0.00 0.00 0.00 1.82
312 313 3.634568 TTGAATGCACCGACGAAATTT 57.365 38.095 0.00 0.00 0.00 1.82
313 314 2.927429 TGAATGCACCGACGAAATTTG 58.073 42.857 0.00 0.00 0.00 2.32
314 315 1.648681 GAATGCACCGACGAAATTTGC 59.351 47.619 0.00 0.00 0.00 3.68
315 316 0.595588 ATGCACCGACGAAATTTGCA 59.404 45.000 0.00 0.00 46.59 4.08
316 317 0.317436 TGCACCGACGAAATTTGCAC 60.317 50.000 0.00 0.00 38.25 4.57
317 318 1.001745 GCACCGACGAAATTTGCACC 61.002 55.000 0.00 0.00 33.24 5.01
318 319 0.309302 CACCGACGAAATTTGCACCA 59.691 50.000 0.00 0.00 0.00 4.17
319 320 1.025812 ACCGACGAAATTTGCACCAA 58.974 45.000 0.00 0.00 0.00 3.67
320 321 1.268845 ACCGACGAAATTTGCACCAAC 60.269 47.619 0.00 0.00 0.00 3.77
321 322 1.001815 CCGACGAAATTTGCACCAACT 60.002 47.619 0.00 0.00 0.00 3.16
322 323 2.307049 CGACGAAATTTGCACCAACTC 58.693 47.619 0.00 0.00 0.00 3.01
323 324 2.032030 CGACGAAATTTGCACCAACTCT 60.032 45.455 0.00 0.00 0.00 3.24
324 325 3.555518 GACGAAATTTGCACCAACTCTC 58.444 45.455 0.00 0.00 0.00 3.20
325 326 2.032030 ACGAAATTTGCACCAACTCTCG 60.032 45.455 0.00 0.00 0.00 4.04
326 327 2.223144 CGAAATTTGCACCAACTCTCGA 59.777 45.455 0.00 0.00 0.00 4.04
327 328 3.665323 CGAAATTTGCACCAACTCTCGAG 60.665 47.826 5.93 5.93 0.00 4.04
328 329 1.813513 ATTTGCACCAACTCTCGAGG 58.186 50.000 13.56 5.96 0.00 4.63
329 330 0.468226 TTTGCACCAACTCTCGAGGT 59.532 50.000 13.56 6.66 35.65 3.85
336 337 2.086054 CAACTCTCGAGGTGGGAAAG 57.914 55.000 13.56 2.88 42.28 2.62
337 338 0.977395 AACTCTCGAGGTGGGAAAGG 59.023 55.000 13.56 0.00 0.00 3.11
338 339 0.905337 ACTCTCGAGGTGGGAAAGGG 60.905 60.000 13.56 0.00 0.00 3.95
339 340 2.245438 CTCTCGAGGTGGGAAAGGGC 62.245 65.000 13.56 0.00 0.00 5.19
340 341 2.528127 TCGAGGTGGGAAAGGGCA 60.528 61.111 0.00 0.00 0.00 5.36
341 342 2.124507 CTCGAGGTGGGAAAGGGCAA 62.125 60.000 3.91 0.00 0.00 4.52
342 343 1.000896 CGAGGTGGGAAAGGGCAAT 60.001 57.895 0.00 0.00 0.00 3.56
343 344 1.315257 CGAGGTGGGAAAGGGCAATG 61.315 60.000 0.00 0.00 0.00 2.82
344 345 1.607801 GAGGTGGGAAAGGGCAATGC 61.608 60.000 0.00 0.00 0.00 3.56
345 346 1.912763 GGTGGGAAAGGGCAATGCA 60.913 57.895 7.79 0.00 0.00 3.96
346 347 1.266867 GGTGGGAAAGGGCAATGCAT 61.267 55.000 7.79 0.00 0.00 3.96
347 348 0.108041 GTGGGAAAGGGCAATGCATG 60.108 55.000 7.79 0.00 0.00 4.06
348 349 1.266160 TGGGAAAGGGCAATGCATGG 61.266 55.000 7.79 0.00 0.00 3.66
349 350 1.266867 GGGAAAGGGCAATGCATGGT 61.267 55.000 7.79 0.00 0.00 3.55
350 351 1.484038 GGAAAGGGCAATGCATGGTA 58.516 50.000 7.79 0.00 0.00 3.25
351 352 2.041701 GGAAAGGGCAATGCATGGTAT 58.958 47.619 7.79 0.00 0.00 2.73
352 353 2.036346 GGAAAGGGCAATGCATGGTATC 59.964 50.000 7.79 0.00 0.00 2.24
353 354 1.321474 AAGGGCAATGCATGGTATCG 58.679 50.000 7.79 0.00 0.00 2.92
354 355 0.473755 AGGGCAATGCATGGTATCGA 59.526 50.000 7.79 0.00 0.00 3.59
355 356 1.133823 AGGGCAATGCATGGTATCGAA 60.134 47.619 7.79 0.00 0.00 3.71
356 357 1.267806 GGGCAATGCATGGTATCGAAG 59.732 52.381 7.79 0.00 0.00 3.79
357 358 2.221169 GGCAATGCATGGTATCGAAGA 58.779 47.619 7.79 0.00 45.75 2.87
358 359 2.225019 GGCAATGCATGGTATCGAAGAG 59.775 50.000 7.79 0.00 43.63 2.85
359 360 2.225019 GCAATGCATGGTATCGAAGAGG 59.775 50.000 0.00 0.00 43.63 3.69
360 361 2.175878 ATGCATGGTATCGAAGAGGC 57.824 50.000 0.00 0.00 43.63 4.70
361 362 1.123077 TGCATGGTATCGAAGAGGCT 58.877 50.000 0.00 0.00 43.63 4.58
362 363 2.316108 TGCATGGTATCGAAGAGGCTA 58.684 47.619 0.00 0.00 43.63 3.93
363 364 2.297315 TGCATGGTATCGAAGAGGCTAG 59.703 50.000 0.00 0.00 43.63 3.42
364 365 2.928731 GCATGGTATCGAAGAGGCTAGC 60.929 54.545 6.04 6.04 43.63 3.42
367 368 2.764010 TGGTATCGAAGAGGCTAGCAAA 59.236 45.455 18.24 0.00 43.63 3.68
391 392 2.967362 CACATACTTGGGCAACGTCTA 58.033 47.619 0.00 0.00 37.60 2.59
399 400 1.448893 GGCAACGTCTAATGGCGGA 60.449 57.895 0.00 0.00 32.19 5.54
403 404 1.135083 CAACGTCTAATGGCGGAGACT 60.135 52.381 10.36 0.00 40.01 3.24
410 411 1.813513 AATGGCGGAGACTTTGTCTG 58.186 50.000 4.85 0.00 43.53 3.51
440 441 0.037697 AGTCGGCTGCGTTGTTGATA 60.038 50.000 0.00 0.00 0.00 2.15
456 457 1.306654 ATAGGGCCCTTCGGTGACA 60.307 57.895 34.04 9.92 0.00 3.58
471 472 1.078426 GACAGCGCTATGGGTTGGT 60.078 57.895 10.99 0.00 31.71 3.67
475 476 1.128200 AGCGCTATGGGTTGGTGATA 58.872 50.000 8.99 0.00 0.00 2.15
481 482 0.395173 ATGGGTTGGTGATAACGGCC 60.395 55.000 0.00 0.00 0.00 6.13
488 489 0.596859 GGTGATAACGGCCGAGCTAC 60.597 60.000 35.90 21.82 0.00 3.58
490 491 1.358046 GATAACGGCCGAGCTACGT 59.642 57.895 35.90 3.57 43.43 3.57
499 500 1.153978 CGAGCTACGTTGGCGGTTA 60.154 57.895 0.00 0.00 43.45 2.85
521 523 3.364549 TGTGGATAGGCAAAAATGAGGG 58.635 45.455 0.00 0.00 0.00 4.30
528 530 3.794911 AGGCAAAAATGAGGGGAGAAAT 58.205 40.909 0.00 0.00 0.00 2.17
529 531 4.946646 AGGCAAAAATGAGGGGAGAAATA 58.053 39.130 0.00 0.00 0.00 1.40
534 536 4.423625 AAATGAGGGGAGAAATAGGACG 57.576 45.455 0.00 0.00 0.00 4.79
549 551 1.681327 GACGGGTCAGGCTAGGTCA 60.681 63.158 0.00 0.00 0.00 4.02
559 564 1.008938 AGGCTAGGTCAGGGTTCTCAT 59.991 52.381 0.00 0.00 0.00 2.90
572 577 9.396022 GTCAGGGTTCTCATAAGATTTGAAATA 57.604 33.333 0.00 0.00 0.00 1.40
582 587 1.338020 GATTTGAAATAGGCCCTGGCG 59.662 52.381 0.00 0.00 43.06 5.69
588 593 1.201429 AATAGGCCCTGGCGGATAGG 61.201 60.000 0.00 0.00 43.06 2.57
604 609 0.963856 TAGGCCGACATGTCAGACGT 60.964 55.000 24.93 16.03 0.00 4.34
632 637 1.384783 ACCCCATACCGCCCACATA 60.385 57.895 0.00 0.00 0.00 2.29
633 638 0.770557 ACCCCATACCGCCCACATAT 60.771 55.000 0.00 0.00 0.00 1.78
634 639 1.281419 CCCCATACCGCCCACATATA 58.719 55.000 0.00 0.00 0.00 0.86
635 640 1.843851 CCCCATACCGCCCACATATAT 59.156 52.381 0.00 0.00 0.00 0.86
669 674 3.233231 TGCCAGGCAGCCCAAAAC 61.233 61.111 11.22 0.00 33.32 2.43
886 891 4.229582 AGGCCTTATCTTTGGGTCACATTA 59.770 41.667 0.00 0.00 0.00 1.90
919 924 3.581101 TGATATGGGGAGAGACTTCCAG 58.419 50.000 0.00 0.00 39.09 3.86
930 935 5.775701 GGAGAGACTTCCAGGCTATATAACA 59.224 44.000 0.00 0.00 30.20 2.41
939 947 7.149202 TCCAGGCTATATAACAAGGTGAATT 57.851 36.000 0.00 0.00 0.00 2.17
957 965 0.105964 TTAGCACAGAAGCACCGTGT 59.894 50.000 0.00 0.00 36.85 4.49
958 966 0.319555 TAGCACAGAAGCACCGTGTC 60.320 55.000 0.00 0.00 36.85 3.67
959 967 1.887242 GCACAGAAGCACCGTGTCA 60.887 57.895 0.00 0.00 33.13 3.58
960 968 1.835483 GCACAGAAGCACCGTGTCAG 61.835 60.000 0.00 0.00 33.13 3.51
961 969 0.530650 CACAGAAGCACCGTGTCAGT 60.531 55.000 0.00 0.00 0.00 3.41
962 970 0.530650 ACAGAAGCACCGTGTCAGTG 60.531 55.000 0.00 0.00 38.30 3.66
963 971 0.530650 CAGAAGCACCGTGTCAGTGT 60.531 55.000 0.00 0.00 37.56 3.55
964 972 0.249489 AGAAGCACCGTGTCAGTGTC 60.249 55.000 0.00 0.00 37.56 3.67
965 973 0.529773 GAAGCACCGTGTCAGTGTCA 60.530 55.000 0.00 0.00 37.56 3.58
966 974 0.530650 AAGCACCGTGTCAGTGTCAG 60.531 55.000 0.00 0.00 37.56 3.51
967 975 1.227263 GCACCGTGTCAGTGTCAGT 60.227 57.895 0.00 0.00 37.56 3.41
968 976 0.031585 GCACCGTGTCAGTGTCAGTA 59.968 55.000 0.00 0.00 37.56 2.74
1110 1126 2.681778 CTCCGGTGCCTCTCCACT 60.682 66.667 0.00 0.00 36.03 4.00
1167 1183 4.415332 TCGTTCACGCCGCTCCTC 62.415 66.667 0.00 0.00 39.60 3.71
1338 1354 0.616111 ACGACAATGAGGGCCTCTCT 60.616 55.000 32.28 18.01 42.86 3.10
1419 1435 2.358247 GTCCACGTCAACCCGCAT 60.358 61.111 0.00 0.00 0.00 4.73
1482 1498 0.750546 TCTACTACCGCATCGCCACT 60.751 55.000 0.00 0.00 0.00 4.00
1620 1642 1.002684 GTCCTCGACGCTAGTATGGTG 60.003 57.143 0.00 0.00 0.00 4.17
1638 1660 3.397230 GTGGATGCCAACGGGAACCTA 62.397 57.143 2.65 0.00 40.97 3.08
1899 1926 1.002011 GGCCAACTTCCAGTCCCTC 60.002 63.158 0.00 0.00 0.00 4.30
2088 2115 1.993948 GACGACCCTAGGCCCCTTT 60.994 63.158 2.05 0.00 0.00 3.11
2445 2478 2.747686 GTCGGTGGGGTCATGTGT 59.252 61.111 0.00 0.00 0.00 3.72
2481 2514 0.988832 TGTGGGGCGAGAGGTATTTT 59.011 50.000 0.00 0.00 0.00 1.82
2607 2660 3.057033 GGTCAAGCTGTGCAAATCAATCT 60.057 43.478 0.00 0.00 0.00 2.40
2614 2667 4.508861 GCTGTGCAAATCAATCTTGTTTGT 59.491 37.500 13.98 0.00 34.59 2.83
2658 2719 9.883142 ATAATAGTTCTGATGAGCTAATAAGGC 57.117 33.333 0.00 0.00 38.99 4.35
2767 2830 8.550376 GCAAGTGAATTTGTGTGAAATTTATGT 58.450 29.630 0.00 0.00 30.68 2.29
3201 3269 1.691196 ACCACCACAACTTGTCATGG 58.309 50.000 15.33 15.33 38.03 3.66
3203 3271 0.961019 CACCACAACTTGTCATGGGG 59.039 55.000 0.00 0.00 45.95 4.96
3497 3567 7.247728 TCGCATAATTTTTGGTTCACAGTATC 58.752 34.615 0.00 0.00 0.00 2.24
3498 3568 7.120579 TCGCATAATTTTTGGTTCACAGTATCT 59.879 33.333 0.00 0.00 0.00 1.98
3499 3569 8.394877 CGCATAATTTTTGGTTCACAGTATCTA 58.605 33.333 0.00 0.00 0.00 1.98
3548 3618 9.328721 GCAAACATAATTTTCTTTAAATGCACC 57.671 29.630 0.00 0.00 36.57 5.01
3549 3619 9.824534 CAAACATAATTTTCTTTAAATGCACCC 57.175 29.630 0.00 0.00 36.57 4.61
3550 3620 8.560355 AACATAATTTTCTTTAAATGCACCCC 57.440 30.769 0.00 0.00 36.57 4.95
3551 3621 7.684529 ACATAATTTTCTTTAAATGCACCCCA 58.315 30.769 0.00 0.00 36.57 4.96
3552 3622 7.606073 ACATAATTTTCTTTAAATGCACCCCAC 59.394 33.333 0.00 0.00 36.57 4.61
3553 3623 5.559148 ATTTTCTTTAAATGCACCCCACA 57.441 34.783 0.00 0.00 35.15 4.17
3554 3624 5.359194 TTTTCTTTAAATGCACCCCACAA 57.641 34.783 0.00 0.00 0.00 3.33
3555 3625 5.359194 TTTCTTTAAATGCACCCCACAAA 57.641 34.783 0.00 0.00 0.00 2.83
3556 3626 5.359194 TTCTTTAAATGCACCCCACAAAA 57.641 34.783 0.00 0.00 0.00 2.44
3557 3627 4.698575 TCTTTAAATGCACCCCACAAAAC 58.301 39.130 0.00 0.00 0.00 2.43
3558 3628 2.802787 TAAATGCACCCCACAAAACG 57.197 45.000 0.00 0.00 0.00 3.60
3559 3629 0.827368 AAATGCACCCCACAAAACGT 59.173 45.000 0.00 0.00 0.00 3.99
3560 3630 1.693627 AATGCACCCCACAAAACGTA 58.306 45.000 0.00 0.00 0.00 3.57
3561 3631 0.955905 ATGCACCCCACAAAACGTAC 59.044 50.000 0.00 0.00 0.00 3.67
3562 3632 0.393944 TGCACCCCACAAAACGTACA 60.394 50.000 0.00 0.00 0.00 2.90
3563 3633 0.029700 GCACCCCACAAAACGTACAC 59.970 55.000 0.00 0.00 0.00 2.90
3564 3634 0.305313 CACCCCACAAAACGTACACG 59.695 55.000 0.00 0.00 46.33 4.49
3565 3635 0.814812 ACCCCACAAAACGTACACGG 60.815 55.000 6.72 0.00 44.95 4.94
3566 3636 0.532417 CCCCACAAAACGTACACGGA 60.532 55.000 6.72 0.00 44.95 4.69
3567 3637 1.515081 CCCACAAAACGTACACGGAT 58.485 50.000 6.72 0.00 44.95 4.18
3568 3638 2.612471 CCCCACAAAACGTACACGGATA 60.612 50.000 6.72 0.00 44.95 2.59
3569 3639 2.412770 CCCACAAAACGTACACGGATAC 59.587 50.000 6.72 0.00 44.95 2.24
3570 3640 3.058450 CCACAAAACGTACACGGATACA 58.942 45.455 6.72 0.00 44.95 2.29
3571 3641 3.680937 CCACAAAACGTACACGGATACAT 59.319 43.478 6.72 0.00 44.95 2.29
3572 3642 4.152759 CCACAAAACGTACACGGATACATT 59.847 41.667 6.72 0.00 44.95 2.71
3573 3643 5.348179 CCACAAAACGTACACGGATACATTA 59.652 40.000 6.72 0.00 44.95 1.90
3574 3644 6.235642 CACAAAACGTACACGGATACATTAC 58.764 40.000 6.72 0.00 44.95 1.89
3575 3645 5.348451 ACAAAACGTACACGGATACATTACC 59.652 40.000 6.72 0.00 44.95 2.85
3576 3646 4.717233 AACGTACACGGATACATTACCA 57.283 40.909 6.72 0.00 44.95 3.25
3577 3647 4.032703 ACGTACACGGATACATTACCAC 57.967 45.455 6.72 0.00 44.95 4.16
3578 3648 3.181487 ACGTACACGGATACATTACCACC 60.181 47.826 6.72 0.00 44.95 4.61
3580 3650 1.214367 CACGGATACATTACCACCGC 58.786 55.000 0.00 0.00 46.18 5.68
3581 3651 0.825410 ACGGATACATTACCACCGCA 59.175 50.000 0.00 0.00 46.18 5.69
3582 3652 1.414919 ACGGATACATTACCACCGCAT 59.585 47.619 0.00 0.00 46.18 4.73
3583 3653 1.798223 CGGATACATTACCACCGCATG 59.202 52.381 0.00 0.00 37.32 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.877178 AGAGTCATATTTTCAGTTTTATCGAGT 57.123 29.630 0.00 0.00 0.00 4.18
57 58 8.859090 GCTAGAGGCATTCATATAGAGTCATAT 58.141 37.037 0.00 0.00 41.35 1.78
58 59 8.231692 GCTAGAGGCATTCATATAGAGTCATA 57.768 38.462 0.00 0.00 41.35 2.15
59 60 7.111247 GCTAGAGGCATTCATATAGAGTCAT 57.889 40.000 0.00 0.00 41.35 3.06
60 61 6.522625 GCTAGAGGCATTCATATAGAGTCA 57.477 41.667 0.00 0.00 41.35 3.41
82 83 0.321122 ACTTGTAGCTCAGCCACTGC 60.321 55.000 0.00 0.00 37.95 4.40
83 84 3.319137 TTACTTGTAGCTCAGCCACTG 57.681 47.619 0.00 0.00 0.00 3.66
84 85 5.129485 ACATATTACTTGTAGCTCAGCCACT 59.871 40.000 0.00 0.00 0.00 4.00
85 86 5.360591 ACATATTACTTGTAGCTCAGCCAC 58.639 41.667 0.00 0.00 0.00 5.01
86 87 5.128663 TGACATATTACTTGTAGCTCAGCCA 59.871 40.000 0.00 0.00 0.00 4.75
87 88 5.601662 TGACATATTACTTGTAGCTCAGCC 58.398 41.667 0.00 0.00 0.00 4.85
88 89 5.176590 GCTGACATATTACTTGTAGCTCAGC 59.823 44.000 0.00 0.00 35.47 4.26
89 90 6.511416 AGCTGACATATTACTTGTAGCTCAG 58.489 40.000 0.00 0.00 33.09 3.35
90 91 6.471233 AGCTGACATATTACTTGTAGCTCA 57.529 37.500 0.00 0.00 33.09 4.26
104 105 8.886719 GCTTTGCATTATCATATAGCTGACATA 58.113 33.333 0.00 0.00 0.00 2.29
105 106 7.392393 TGCTTTGCATTATCATATAGCTGACAT 59.608 33.333 0.00 0.00 31.71 3.06
106 107 6.711645 TGCTTTGCATTATCATATAGCTGACA 59.288 34.615 0.00 0.00 31.71 3.58
107 108 7.137490 TGCTTTGCATTATCATATAGCTGAC 57.863 36.000 0.00 0.00 31.71 3.51
108 109 7.748691 TTGCTTTGCATTATCATATAGCTGA 57.251 32.000 0.00 0.00 38.76 4.26
117 118 9.819267 TCATTTTCATATTGCTTTGCATTATCA 57.181 25.926 0.00 0.00 38.76 2.15
120 121 9.100554 CCTTCATTTTCATATTGCTTTGCATTA 57.899 29.630 0.00 0.00 38.76 1.90
121 122 7.608761 ACCTTCATTTTCATATTGCTTTGCATT 59.391 29.630 0.00 0.00 38.76 3.56
122 123 7.107542 ACCTTCATTTTCATATTGCTTTGCAT 58.892 30.769 0.00 0.00 38.76 3.96
123 124 6.465948 ACCTTCATTTTCATATTGCTTTGCA 58.534 32.000 0.00 0.00 36.47 4.08
124 125 6.973229 ACCTTCATTTTCATATTGCTTTGC 57.027 33.333 0.00 0.00 0.00 3.68
143 144 9.990360 ACCGTTCATTTTTATTTCATAAACCTT 57.010 25.926 0.00 0.00 34.68 3.50
144 145 9.418045 CACCGTTCATTTTTATTTCATAAACCT 57.582 29.630 0.00 0.00 34.68 3.50
145 146 8.166066 GCACCGTTCATTTTTATTTCATAAACC 58.834 33.333 0.00 0.00 34.68 3.27
146 147 8.704234 TGCACCGTTCATTTTTATTTCATAAAC 58.296 29.630 0.00 0.00 34.68 2.01
147 148 8.818141 TGCACCGTTCATTTTTATTTCATAAA 57.182 26.923 0.00 0.00 33.20 1.40
148 149 8.818141 TTGCACCGTTCATTTTTATTTCATAA 57.182 26.923 0.00 0.00 0.00 1.90
149 150 8.085296 ACTTGCACCGTTCATTTTTATTTCATA 58.915 29.630 0.00 0.00 0.00 2.15
150 151 6.928492 ACTTGCACCGTTCATTTTTATTTCAT 59.072 30.769 0.00 0.00 0.00 2.57
151 152 6.276847 ACTTGCACCGTTCATTTTTATTTCA 58.723 32.000 0.00 0.00 0.00 2.69
152 153 6.763303 ACTTGCACCGTTCATTTTTATTTC 57.237 33.333 0.00 0.00 0.00 2.17
153 154 6.510960 GCAACTTGCACCGTTCATTTTTATTT 60.511 34.615 8.97 0.00 44.26 1.40
154 155 5.050431 GCAACTTGCACCGTTCATTTTTATT 60.050 36.000 8.97 0.00 44.26 1.40
155 156 4.447389 GCAACTTGCACCGTTCATTTTTAT 59.553 37.500 8.97 0.00 44.26 1.40
156 157 3.799420 GCAACTTGCACCGTTCATTTTTA 59.201 39.130 8.97 0.00 44.26 1.52
157 158 2.607180 GCAACTTGCACCGTTCATTTTT 59.393 40.909 8.97 0.00 44.26 1.94
158 159 2.200899 GCAACTTGCACCGTTCATTTT 58.799 42.857 8.97 0.00 44.26 1.82
159 160 1.851658 GCAACTTGCACCGTTCATTT 58.148 45.000 8.97 0.00 44.26 2.32
160 161 3.568093 GCAACTTGCACCGTTCATT 57.432 47.368 8.97 0.00 44.26 2.57
170 171 6.142798 CCGAAATATATTGTCATGCAACTTGC 59.857 38.462 6.82 6.82 45.29 4.01
171 172 7.416817 TCCGAAATATATTGTCATGCAACTTG 58.583 34.615 0.00 0.00 40.28 3.16
172 173 7.566760 TCCGAAATATATTGTCATGCAACTT 57.433 32.000 0.00 0.19 40.28 2.66
173 174 7.566760 TTCCGAAATATATTGTCATGCAACT 57.433 32.000 0.00 0.33 40.28 3.16
174 175 7.326789 CCATTCCGAAATATATTGTCATGCAAC 59.673 37.037 0.00 0.00 40.28 4.17
175 176 7.369607 CCATTCCGAAATATATTGTCATGCAA 58.630 34.615 0.00 5.27 41.89 4.08
176 177 6.570186 GCCATTCCGAAATATATTGTCATGCA 60.570 38.462 0.00 0.00 0.00 3.96
177 178 5.801947 GCCATTCCGAAATATATTGTCATGC 59.198 40.000 0.00 0.00 0.00 4.06
178 179 7.149569 AGCCATTCCGAAATATATTGTCATG 57.850 36.000 0.00 0.00 0.00 3.07
179 180 8.896744 CATAGCCATTCCGAAATATATTGTCAT 58.103 33.333 0.00 0.00 0.00 3.06
180 181 8.100164 TCATAGCCATTCCGAAATATATTGTCA 58.900 33.333 0.00 0.00 0.00 3.58
181 182 8.492673 TCATAGCCATTCCGAAATATATTGTC 57.507 34.615 0.00 0.00 0.00 3.18
182 183 8.862325 TTCATAGCCATTCCGAAATATATTGT 57.138 30.769 0.00 0.00 0.00 2.71
186 187 8.243426 GCATTTTCATAGCCATTCCGAAATATA 58.757 33.333 0.00 0.00 0.00 0.86
187 188 7.092716 GCATTTTCATAGCCATTCCGAAATAT 58.907 34.615 0.00 0.00 0.00 1.28
188 189 6.446318 GCATTTTCATAGCCATTCCGAAATA 58.554 36.000 0.00 0.00 0.00 1.40
189 190 5.291971 GCATTTTCATAGCCATTCCGAAAT 58.708 37.500 0.00 0.00 0.00 2.17
190 191 4.681744 GCATTTTCATAGCCATTCCGAAA 58.318 39.130 0.00 0.00 0.00 3.46
191 192 4.305989 GCATTTTCATAGCCATTCCGAA 57.694 40.909 0.00 0.00 0.00 4.30
192 193 3.988379 GCATTTTCATAGCCATTCCGA 57.012 42.857 0.00 0.00 0.00 4.55
200 201 7.112779 ACCTACCTATATGGCATTTTCATAGC 58.887 38.462 4.78 0.00 40.22 2.97
203 204 8.055181 CCATACCTACCTATATGGCATTTTCAT 58.945 37.037 4.78 0.00 41.01 2.57
204 205 7.402054 CCATACCTACCTATATGGCATTTTCA 58.598 38.462 4.78 0.00 41.01 2.69
205 206 7.865706 CCATACCTACCTATATGGCATTTTC 57.134 40.000 4.78 0.00 41.01 2.29
213 214 7.496346 AACATCCACCATACCTACCTATATG 57.504 40.000 0.00 0.00 0.00 1.78
214 215 8.383175 CAAAACATCCACCATACCTACCTATAT 58.617 37.037 0.00 0.00 0.00 0.86
215 216 7.202149 CCAAAACATCCACCATACCTACCTATA 60.202 40.741 0.00 0.00 0.00 1.31
216 217 6.410388 CCAAAACATCCACCATACCTACCTAT 60.410 42.308 0.00 0.00 0.00 2.57
217 218 5.104277 CCAAAACATCCACCATACCTACCTA 60.104 44.000 0.00 0.00 0.00 3.08
218 219 4.325030 CCAAAACATCCACCATACCTACCT 60.325 45.833 0.00 0.00 0.00 3.08
219 220 3.951680 CCAAAACATCCACCATACCTACC 59.048 47.826 0.00 0.00 0.00 3.18
220 221 3.951680 CCCAAAACATCCACCATACCTAC 59.048 47.826 0.00 0.00 0.00 3.18
221 222 3.053245 CCCCAAAACATCCACCATACCTA 60.053 47.826 0.00 0.00 0.00 3.08
222 223 2.292192 CCCCAAAACATCCACCATACCT 60.292 50.000 0.00 0.00 0.00 3.08
223 224 2.107366 CCCCAAAACATCCACCATACC 58.893 52.381 0.00 0.00 0.00 2.73
224 225 3.094484 TCCCCAAAACATCCACCATAC 57.906 47.619 0.00 0.00 0.00 2.39
225 226 3.565449 CCTTCCCCAAAACATCCACCATA 60.565 47.826 0.00 0.00 0.00 2.74
226 227 2.539302 CTTCCCCAAAACATCCACCAT 58.461 47.619 0.00 0.00 0.00 3.55
227 228 1.482177 CCTTCCCCAAAACATCCACCA 60.482 52.381 0.00 0.00 0.00 4.17
228 229 1.266178 CCTTCCCCAAAACATCCACC 58.734 55.000 0.00 0.00 0.00 4.61
229 230 2.009681 ACCTTCCCCAAAACATCCAC 57.990 50.000 0.00 0.00 0.00 4.02
230 231 5.515106 CTTATACCTTCCCCAAAACATCCA 58.485 41.667 0.00 0.00 0.00 3.41
231 232 4.893524 CCTTATACCTTCCCCAAAACATCC 59.106 45.833 0.00 0.00 0.00 3.51
232 233 5.762279 TCCTTATACCTTCCCCAAAACATC 58.238 41.667 0.00 0.00 0.00 3.06
233 234 5.340863 CCTCCTTATACCTTCCCCAAAACAT 60.341 44.000 0.00 0.00 0.00 2.71
234 235 4.017867 CCTCCTTATACCTTCCCCAAAACA 60.018 45.833 0.00 0.00 0.00 2.83
235 236 4.533815 CCTCCTTATACCTTCCCCAAAAC 58.466 47.826 0.00 0.00 0.00 2.43
236 237 3.053170 GCCTCCTTATACCTTCCCCAAAA 60.053 47.826 0.00 0.00 0.00 2.44
237 238 2.512476 GCCTCCTTATACCTTCCCCAAA 59.488 50.000 0.00 0.00 0.00 3.28
238 239 2.132686 GCCTCCTTATACCTTCCCCAA 58.867 52.381 0.00 0.00 0.00 4.12
239 240 1.297141 AGCCTCCTTATACCTTCCCCA 59.703 52.381 0.00 0.00 0.00 4.96
240 241 2.119939 AGCCTCCTTATACCTTCCCC 57.880 55.000 0.00 0.00 0.00 4.81
241 242 4.597940 ACATAAGCCTCCTTATACCTTCCC 59.402 45.833 0.00 0.00 41.23 3.97
242 243 5.071923 ACACATAAGCCTCCTTATACCTTCC 59.928 44.000 0.00 0.00 41.23 3.46
243 244 5.992217 CACACATAAGCCTCCTTATACCTTC 59.008 44.000 0.00 0.00 41.23 3.46
244 245 5.665812 TCACACATAAGCCTCCTTATACCTT 59.334 40.000 0.00 0.00 41.23 3.50
245 246 5.216622 TCACACATAAGCCTCCTTATACCT 58.783 41.667 0.00 0.00 41.23 3.08
246 247 5.546621 TCACACATAAGCCTCCTTATACC 57.453 43.478 0.00 0.00 41.23 2.73
247 248 8.123639 TCTATCACACATAAGCCTCCTTATAC 57.876 38.462 0.00 0.00 41.23 1.47
248 249 7.093727 GCTCTATCACACATAAGCCTCCTTATA 60.094 40.741 0.00 0.00 41.23 0.98
249 250 6.295575 GCTCTATCACACATAAGCCTCCTTAT 60.296 42.308 0.00 0.00 43.35 1.73
250 251 5.011125 GCTCTATCACACATAAGCCTCCTTA 59.989 44.000 0.00 0.00 37.90 2.69
251 252 4.202305 GCTCTATCACACATAAGCCTCCTT 60.202 45.833 0.00 0.00 35.05 3.36
252 253 3.323403 GCTCTATCACACATAAGCCTCCT 59.677 47.826 0.00 0.00 0.00 3.69
253 254 3.070159 TGCTCTATCACACATAAGCCTCC 59.930 47.826 0.00 0.00 0.00 4.30
254 255 4.327982 TGCTCTATCACACATAAGCCTC 57.672 45.455 0.00 0.00 0.00 4.70
255 256 4.970860 ATGCTCTATCACACATAAGCCT 57.029 40.909 0.00 0.00 0.00 4.58
256 257 6.401394 TGATATGCTCTATCACACATAAGCC 58.599 40.000 5.71 0.00 0.00 4.35
257 258 7.980662 AGATGATATGCTCTATCACACATAAGC 59.019 37.037 10.50 0.00 36.84 3.09
258 259 9.518906 GAGATGATATGCTCTATCACACATAAG 57.481 37.037 10.50 0.00 36.84 1.73
259 260 9.028284 TGAGATGATATGCTCTATCACACATAA 57.972 33.333 10.50 0.00 36.84 1.90
260 261 8.465201 GTGAGATGATATGCTCTATCACACATA 58.535 37.037 10.50 0.00 39.40 2.29
261 262 7.321908 GTGAGATGATATGCTCTATCACACAT 58.678 38.462 10.50 0.00 39.40 3.21
262 263 6.569226 CGTGAGATGATATGCTCTATCACACA 60.569 42.308 18.24 13.16 39.49 3.72
263 264 5.799435 CGTGAGATGATATGCTCTATCACAC 59.201 44.000 10.50 12.13 36.84 3.82
264 265 5.105997 CCGTGAGATGATATGCTCTATCACA 60.106 44.000 10.50 4.14 36.84 3.58
265 266 5.339177 CCGTGAGATGATATGCTCTATCAC 58.661 45.833 10.50 0.00 36.84 3.06
266 267 4.400567 CCCGTGAGATGATATGCTCTATCA 59.599 45.833 10.64 10.64 38.20 2.15
267 268 4.202101 CCCCGTGAGATGATATGCTCTATC 60.202 50.000 0.00 0.00 32.44 2.08
268 269 3.703556 CCCCGTGAGATGATATGCTCTAT 59.296 47.826 0.00 0.00 32.44 1.98
269 270 3.092301 CCCCGTGAGATGATATGCTCTA 58.908 50.000 0.00 0.00 32.44 2.43
270 271 1.898472 CCCCGTGAGATGATATGCTCT 59.102 52.381 0.00 0.00 32.44 4.09
271 272 1.620819 ACCCCGTGAGATGATATGCTC 59.379 52.381 0.00 0.00 0.00 4.26
272 273 1.722034 ACCCCGTGAGATGATATGCT 58.278 50.000 0.00 0.00 0.00 3.79
273 274 2.549754 CAAACCCCGTGAGATGATATGC 59.450 50.000 0.00 0.00 0.00 3.14
274 275 4.071961 TCAAACCCCGTGAGATGATATG 57.928 45.455 0.00 0.00 0.00 1.78
275 276 4.771114 TTCAAACCCCGTGAGATGATAT 57.229 40.909 0.00 0.00 0.00 1.63
276 277 4.450976 CATTCAAACCCCGTGAGATGATA 58.549 43.478 0.00 0.00 0.00 2.15
277 278 3.282021 CATTCAAACCCCGTGAGATGAT 58.718 45.455 0.00 0.00 0.00 2.45
278 279 2.710377 CATTCAAACCCCGTGAGATGA 58.290 47.619 0.00 0.00 0.00 2.92
279 280 1.133025 GCATTCAAACCCCGTGAGATG 59.867 52.381 0.00 0.00 0.00 2.90
280 281 1.271871 TGCATTCAAACCCCGTGAGAT 60.272 47.619 0.00 0.00 0.00 2.75
281 282 0.109532 TGCATTCAAACCCCGTGAGA 59.890 50.000 0.00 0.00 0.00 3.27
282 283 0.240945 GTGCATTCAAACCCCGTGAG 59.759 55.000 0.00 0.00 0.00 3.51
283 284 1.175983 GGTGCATTCAAACCCCGTGA 61.176 55.000 0.00 0.00 0.00 4.35
284 285 1.288752 GGTGCATTCAAACCCCGTG 59.711 57.895 0.00 0.00 0.00 4.94
285 286 2.265182 CGGTGCATTCAAACCCCGT 61.265 57.895 0.00 0.00 32.44 5.28
286 287 1.969064 TCGGTGCATTCAAACCCCG 60.969 57.895 1.96 1.96 36.83 5.73
287 288 1.584495 GTCGGTGCATTCAAACCCC 59.416 57.895 0.00 0.00 32.44 4.95
288 289 1.209127 CGTCGGTGCATTCAAACCC 59.791 57.895 0.00 0.00 32.44 4.11
289 290 0.589223 TTCGTCGGTGCATTCAAACC 59.411 50.000 0.00 0.00 0.00 3.27
290 291 2.392933 TTTCGTCGGTGCATTCAAAC 57.607 45.000 0.00 0.00 0.00 2.93
291 292 3.634568 AATTTCGTCGGTGCATTCAAA 57.365 38.095 0.00 0.00 0.00 2.69
292 293 3.304257 CAAATTTCGTCGGTGCATTCAA 58.696 40.909 0.00 0.00 0.00 2.69
293 294 2.920227 GCAAATTTCGTCGGTGCATTCA 60.920 45.455 0.00 0.00 35.28 2.57
294 295 1.648681 GCAAATTTCGTCGGTGCATTC 59.351 47.619 0.00 0.00 35.28 2.67
295 296 1.000827 TGCAAATTTCGTCGGTGCATT 60.001 42.857 0.00 0.00 40.14 3.56
296 297 0.595588 TGCAAATTTCGTCGGTGCAT 59.404 45.000 0.00 0.00 40.14 3.96
297 298 0.317436 GTGCAAATTTCGTCGGTGCA 60.317 50.000 0.00 0.00 42.62 4.57
298 299 1.001745 GGTGCAAATTTCGTCGGTGC 61.002 55.000 0.00 0.00 35.75 5.01
299 300 0.309302 TGGTGCAAATTTCGTCGGTG 59.691 50.000 0.00 0.00 0.00 4.94
300 301 1.025812 TTGGTGCAAATTTCGTCGGT 58.974 45.000 0.00 0.00 0.00 4.69
301 302 1.001815 AGTTGGTGCAAATTTCGTCGG 60.002 47.619 0.00 0.00 0.00 4.79
302 303 2.032030 AGAGTTGGTGCAAATTTCGTCG 60.032 45.455 0.00 0.00 0.00 5.12
303 304 3.555518 GAGAGTTGGTGCAAATTTCGTC 58.444 45.455 0.00 0.00 0.00 4.20
304 305 2.032030 CGAGAGTTGGTGCAAATTTCGT 60.032 45.455 0.00 0.00 39.74 3.85
305 306 2.223144 TCGAGAGTTGGTGCAAATTTCG 59.777 45.455 0.00 0.00 43.60 3.46
306 307 3.365364 CCTCGAGAGTTGGTGCAAATTTC 60.365 47.826 15.71 0.00 0.00 2.17
307 308 2.554032 CCTCGAGAGTTGGTGCAAATTT 59.446 45.455 15.71 0.00 0.00 1.82
308 309 2.154462 CCTCGAGAGTTGGTGCAAATT 58.846 47.619 15.71 0.00 0.00 1.82
309 310 1.072331 ACCTCGAGAGTTGGTGCAAAT 59.928 47.619 15.71 0.00 37.55 2.32
310 311 0.468226 ACCTCGAGAGTTGGTGCAAA 59.532 50.000 15.71 0.00 37.55 3.68
311 312 0.249868 CACCTCGAGAGTTGGTGCAA 60.250 55.000 15.71 0.00 44.39 4.08
312 313 1.367471 CACCTCGAGAGTTGGTGCA 59.633 57.895 15.71 0.00 44.39 4.57
313 314 1.374758 CCACCTCGAGAGTTGGTGC 60.375 63.158 15.71 0.00 46.76 5.01
315 316 0.471211 TTCCCACCTCGAGAGTTGGT 60.471 55.000 15.71 0.00 38.93 3.67
316 317 0.685097 TTTCCCACCTCGAGAGTTGG 59.315 55.000 15.71 16.31 0.00 3.77
317 318 1.338200 CCTTTCCCACCTCGAGAGTTG 60.338 57.143 15.71 7.81 0.00 3.16
318 319 0.977395 CCTTTCCCACCTCGAGAGTT 59.023 55.000 15.71 0.00 0.00 3.01
319 320 0.905337 CCCTTTCCCACCTCGAGAGT 60.905 60.000 15.71 7.40 0.00 3.24
320 321 1.901085 CCCTTTCCCACCTCGAGAG 59.099 63.158 15.71 6.69 0.00 3.20
321 322 2.291043 GCCCTTTCCCACCTCGAGA 61.291 63.158 15.71 0.00 0.00 4.04
322 323 2.124507 TTGCCCTTTCCCACCTCGAG 62.125 60.000 5.13 5.13 0.00 4.04
323 324 1.497309 ATTGCCCTTTCCCACCTCGA 61.497 55.000 0.00 0.00 0.00 4.04
324 325 1.000896 ATTGCCCTTTCCCACCTCG 60.001 57.895 0.00 0.00 0.00 4.63
325 326 1.607801 GCATTGCCCTTTCCCACCTC 61.608 60.000 0.00 0.00 0.00 3.85
326 327 1.610379 GCATTGCCCTTTCCCACCT 60.610 57.895 0.00 0.00 0.00 4.00
327 328 1.266867 ATGCATTGCCCTTTCCCACC 61.267 55.000 6.12 0.00 0.00 4.61
328 329 0.108041 CATGCATTGCCCTTTCCCAC 60.108 55.000 6.12 0.00 0.00 4.61
329 330 1.266160 CCATGCATTGCCCTTTCCCA 61.266 55.000 6.12 0.00 0.00 4.37
330 331 1.266867 ACCATGCATTGCCCTTTCCC 61.267 55.000 6.12 0.00 0.00 3.97
331 332 1.484038 TACCATGCATTGCCCTTTCC 58.516 50.000 6.12 0.00 0.00 3.13
332 333 2.287788 CGATACCATGCATTGCCCTTTC 60.288 50.000 6.12 0.00 0.00 2.62
333 334 1.682854 CGATACCATGCATTGCCCTTT 59.317 47.619 6.12 0.00 0.00 3.11
334 335 1.133823 TCGATACCATGCATTGCCCTT 60.134 47.619 6.12 0.00 0.00 3.95
335 336 0.473755 TCGATACCATGCATTGCCCT 59.526 50.000 6.12 0.00 0.00 5.19
336 337 1.267806 CTTCGATACCATGCATTGCCC 59.732 52.381 6.12 0.00 0.00 5.36
337 338 2.221169 TCTTCGATACCATGCATTGCC 58.779 47.619 6.12 0.00 0.00 4.52
338 339 2.225019 CCTCTTCGATACCATGCATTGC 59.775 50.000 0.00 0.46 0.00 3.56
339 340 2.225019 GCCTCTTCGATACCATGCATTG 59.775 50.000 0.00 0.00 0.00 2.82
340 341 2.105477 AGCCTCTTCGATACCATGCATT 59.895 45.455 0.00 0.00 0.00 3.56
341 342 1.696336 AGCCTCTTCGATACCATGCAT 59.304 47.619 0.00 0.00 0.00 3.96
342 343 1.123077 AGCCTCTTCGATACCATGCA 58.877 50.000 0.00 0.00 0.00 3.96
343 344 2.928731 GCTAGCCTCTTCGATACCATGC 60.929 54.545 2.29 0.00 0.00 4.06
344 345 2.297315 TGCTAGCCTCTTCGATACCATG 59.703 50.000 13.29 0.00 0.00 3.66
345 346 2.598565 TGCTAGCCTCTTCGATACCAT 58.401 47.619 13.29 0.00 0.00 3.55
346 347 2.067365 TGCTAGCCTCTTCGATACCA 57.933 50.000 13.29 0.00 0.00 3.25
347 348 3.454371 TTTGCTAGCCTCTTCGATACC 57.546 47.619 13.29 0.00 0.00 2.73
348 349 4.319118 GCAATTTGCTAGCCTCTTCGATAC 60.319 45.833 13.29 0.00 40.96 2.24
349 350 3.809832 GCAATTTGCTAGCCTCTTCGATA 59.190 43.478 13.29 0.00 40.96 2.92
350 351 2.615912 GCAATTTGCTAGCCTCTTCGAT 59.384 45.455 13.29 0.00 40.96 3.59
351 352 2.009774 GCAATTTGCTAGCCTCTTCGA 58.990 47.619 13.29 0.00 40.96 3.71
352 353 1.739466 TGCAATTTGCTAGCCTCTTCG 59.261 47.619 21.19 0.00 45.31 3.79
353 354 2.489329 TGTGCAATTTGCTAGCCTCTTC 59.511 45.455 21.19 0.00 45.31 2.87
354 355 2.517959 TGTGCAATTTGCTAGCCTCTT 58.482 42.857 21.19 0.00 45.31 2.85
355 356 2.205022 TGTGCAATTTGCTAGCCTCT 57.795 45.000 21.19 0.00 45.31 3.69
356 357 3.629398 AGTATGTGCAATTTGCTAGCCTC 59.371 43.478 21.19 8.43 45.31 4.70
357 358 3.624777 AGTATGTGCAATTTGCTAGCCT 58.375 40.909 21.19 8.65 45.31 4.58
358 359 4.107622 CAAGTATGTGCAATTTGCTAGCC 58.892 43.478 21.19 8.11 45.31 3.93
359 360 4.107622 CCAAGTATGTGCAATTTGCTAGC 58.892 43.478 21.19 8.10 45.31 3.42
360 361 4.675510 CCCAAGTATGTGCAATTTGCTAG 58.324 43.478 21.19 3.71 45.31 3.42
361 362 3.119173 GCCCAAGTATGTGCAATTTGCTA 60.119 43.478 21.19 11.36 45.31 3.49
362 363 2.354003 GCCCAAGTATGTGCAATTTGCT 60.354 45.455 21.19 5.00 45.31 3.91
363 364 2.001872 GCCCAAGTATGTGCAATTTGC 58.998 47.619 14.49 14.49 45.29 3.68
364 365 3.316071 TGCCCAAGTATGTGCAATTTG 57.684 42.857 0.00 0.00 36.98 2.32
374 375 3.541632 CCATTAGACGTTGCCCAAGTAT 58.458 45.455 0.00 0.00 0.00 2.12
391 392 1.611673 CCAGACAAAGTCTCCGCCATT 60.612 52.381 0.00 0.00 41.37 3.16
399 400 1.421268 TGCCATCACCAGACAAAGTCT 59.579 47.619 0.00 0.00 44.44 3.24
403 404 1.133823 ACTGTGCCATCACCAGACAAA 60.134 47.619 0.00 0.00 42.46 2.83
410 411 3.127533 GCCGACTGTGCCATCACC 61.128 66.667 0.00 0.00 42.46 4.02
428 429 1.377987 GGGCCCTATCAACAACGCA 60.378 57.895 17.04 0.00 0.00 5.24
456 457 1.128200 TATCACCAACCCATAGCGCT 58.872 50.000 17.26 17.26 0.00 5.92
458 459 1.864711 CGTTATCACCAACCCATAGCG 59.135 52.381 0.00 0.00 0.00 4.26
471 472 1.357690 CGTAGCTCGGCCGTTATCA 59.642 57.895 27.15 3.71 35.71 2.15
475 476 2.431942 CAACGTAGCTCGGCCGTT 60.432 61.111 27.15 14.62 44.81 4.44
481 482 0.526954 ATAACCGCCAACGTAGCTCG 60.527 55.000 8.65 0.00 46.00 5.03
488 489 1.864711 CTATCCACATAACCGCCAACG 59.135 52.381 0.00 0.00 39.67 4.10
490 491 1.476110 GCCTATCCACATAACCGCCAA 60.476 52.381 0.00 0.00 0.00 4.52
499 500 3.962718 CCCTCATTTTTGCCTATCCACAT 59.037 43.478 0.00 0.00 0.00 3.21
521 523 1.413077 CCTGACCCGTCCTATTTCTCC 59.587 57.143 0.00 0.00 0.00 3.71
528 530 1.229359 CCTAGCCTGACCCGTCCTA 59.771 63.158 0.00 0.00 0.00 2.94
529 531 2.042843 CCTAGCCTGACCCGTCCT 60.043 66.667 0.00 0.00 0.00 3.85
534 536 2.066999 CCCTGACCTAGCCTGACCC 61.067 68.421 0.00 0.00 0.00 4.46
549 551 7.503902 GCCTATTTCAAATCTTATGAGAACCCT 59.496 37.037 0.00 0.00 35.07 4.34
559 564 4.215109 GCCAGGGCCTATTTCAAATCTTA 58.785 43.478 5.28 0.00 34.56 2.10
582 587 1.040646 TCTGACATGTCGGCCTATCC 58.959 55.000 26.94 0.00 35.96 2.59
588 593 1.344942 GACACGTCTGACATGTCGGC 61.345 60.000 26.94 20.36 33.94 5.54
594 599 2.970639 CCCGGACACGTCTGACAT 59.029 61.111 0.73 0.00 38.21 3.06
613 618 1.412453 TATGTGGGCGGTATGGGGTC 61.412 60.000 0.00 0.00 0.00 4.46
632 637 3.502119 GCACCCATTCCCAACCCATATAT 60.502 47.826 0.00 0.00 0.00 0.86
633 638 2.158385 GCACCCATTCCCAACCCATATA 60.158 50.000 0.00 0.00 0.00 0.86
634 639 1.412937 GCACCCATTCCCAACCCATAT 60.413 52.381 0.00 0.00 0.00 1.78
635 640 0.032615 GCACCCATTCCCAACCCATA 60.033 55.000 0.00 0.00 0.00 2.74
641 646 2.444696 CCTGGCACCCATTCCCAA 59.555 61.111 0.00 0.00 30.82 4.12
728 733 9.227777 GTTAGAAAGGAAGGCTTTTAATGAGTA 57.772 33.333 0.00 0.00 0.00 2.59
844 849 7.453141 AGGCCTCTCCAATTTAATTACTACT 57.547 36.000 0.00 0.00 37.29 2.57
886 891 7.350921 TCTCTCCCCATATCAAAGTAGGAAATT 59.649 37.037 0.00 0.00 0.00 1.82
919 924 7.444183 TGTGCTAATTCACCTTGTTATATAGCC 59.556 37.037 0.00 0.00 36.17 3.93
930 935 3.503748 GTGCTTCTGTGCTAATTCACCTT 59.496 43.478 0.00 0.00 36.17 3.50
939 947 4.673403 CACGGTGCTTCTGTGCTA 57.327 55.556 0.00 0.00 44.87 3.49
957 965 4.918588 TCCTACACTGATACTGACACTGA 58.081 43.478 0.00 0.00 0.00 3.41
958 966 5.416013 TCTTCCTACACTGATACTGACACTG 59.584 44.000 0.00 0.00 0.00 3.66
959 967 5.571285 TCTTCCTACACTGATACTGACACT 58.429 41.667 0.00 0.00 0.00 3.55
960 968 5.677598 GCTCTTCCTACACTGATACTGACAC 60.678 48.000 0.00 0.00 0.00 3.67
961 969 4.399618 GCTCTTCCTACACTGATACTGACA 59.600 45.833 0.00 0.00 0.00 3.58
962 970 4.496673 CGCTCTTCCTACACTGATACTGAC 60.497 50.000 0.00 0.00 0.00 3.51
963 971 3.628032 CGCTCTTCCTACACTGATACTGA 59.372 47.826 0.00 0.00 0.00 3.41
964 972 3.243234 CCGCTCTTCCTACACTGATACTG 60.243 52.174 0.00 0.00 0.00 2.74
965 973 2.952978 CCGCTCTTCCTACACTGATACT 59.047 50.000 0.00 0.00 0.00 2.12
966 974 2.544069 GCCGCTCTTCCTACACTGATAC 60.544 54.545 0.00 0.00 0.00 2.24
967 975 1.681793 GCCGCTCTTCCTACACTGATA 59.318 52.381 0.00 0.00 0.00 2.15
968 976 0.461961 GCCGCTCTTCCTACACTGAT 59.538 55.000 0.00 0.00 0.00 2.90
1167 1183 1.280982 CGTTCCTGATGGATGACACG 58.719 55.000 0.00 0.00 42.81 4.49
1338 1354 3.472726 GGGGTGGCCGATCGGTAA 61.473 66.667 33.33 20.05 37.65 2.85
1620 1642 0.746923 GTAGGTTCCCGTTGGCATCC 60.747 60.000 0.00 0.00 0.00 3.51
1638 1660 1.600916 GGCCTTCTTGTTCGGCAGT 60.601 57.895 0.00 0.00 45.53 4.40
1899 1926 2.103042 GCTGCAGTTGCCGAGGTAG 61.103 63.158 16.64 0.00 41.18 3.18
2088 2115 4.036734 ACGTAGTCGGACTTGTTCTTAACA 59.963 41.667 16.95 0.00 29.74 2.41
2445 2478 1.944024 CACACCTTGGCAGTTTCGTAA 59.056 47.619 0.00 0.00 0.00 3.18
2481 2514 2.123683 TTGAAGTTTGCGGGGCCA 60.124 55.556 4.39 0.00 0.00 5.36
2607 2660 4.817464 AGCAGTTACAATACGGACAAACAA 59.183 37.500 0.00 0.00 0.00 2.83
2875 2941 5.188434 TCATTCAAAGAGGGCTCTAATGTG 58.812 41.667 6.04 0.00 39.39 3.21
2876 2942 5.441718 TCATTCAAAGAGGGCTCTAATGT 57.558 39.130 6.04 0.00 39.39 2.71
2877 2943 5.826737 ACATCATTCAAAGAGGGCTCTAATG 59.173 40.000 0.29 0.29 39.39 1.90
2878 2944 5.826737 CACATCATTCAAAGAGGGCTCTAAT 59.173 40.000 0.00 0.00 39.39 1.73
2879 2945 5.188434 CACATCATTCAAAGAGGGCTCTAA 58.812 41.667 0.00 0.00 39.39 2.10
3120 3188 2.104792 TCTCAGCTTGGCACATATACCC 59.895 50.000 0.00 0.00 39.30 3.69
3201 3269 2.952310 GGCTGACTCACCATTATTTCCC 59.048 50.000 0.00 0.00 0.00 3.97
3203 3271 3.629398 CCTGGCTGACTCACCATTATTTC 59.371 47.826 0.00 0.00 34.82 2.17
3522 3592 9.328721 GGTGCATTTAAAGAAAATTATGTTTGC 57.671 29.630 0.00 0.00 35.54 3.68
3523 3593 9.824534 GGGTGCATTTAAAGAAAATTATGTTTG 57.175 29.630 0.00 0.00 35.54 2.93
3524 3594 9.008965 GGGGTGCATTTAAAGAAAATTATGTTT 57.991 29.630 0.00 0.00 35.54 2.83
3525 3595 8.160106 TGGGGTGCATTTAAAGAAAATTATGTT 58.840 29.630 0.00 0.00 35.54 2.71
3526 3596 7.606073 GTGGGGTGCATTTAAAGAAAATTATGT 59.394 33.333 0.00 0.00 35.54 2.29
3527 3597 7.605691 TGTGGGGTGCATTTAAAGAAAATTATG 59.394 33.333 0.00 0.00 35.54 1.90
3528 3598 7.684529 TGTGGGGTGCATTTAAAGAAAATTAT 58.315 30.769 0.00 0.00 35.54 1.28
3529 3599 7.067496 TGTGGGGTGCATTTAAAGAAAATTA 57.933 32.000 0.00 0.00 35.54 1.40
3530 3600 5.934781 TGTGGGGTGCATTTAAAGAAAATT 58.065 33.333 0.00 0.00 35.54 1.82
3531 3601 5.559148 TGTGGGGTGCATTTAAAGAAAAT 57.441 34.783 0.00 0.00 38.36 1.82
3532 3602 5.359194 TTGTGGGGTGCATTTAAAGAAAA 57.641 34.783 0.00 0.00 0.00 2.29
3533 3603 5.359194 TTTGTGGGGTGCATTTAAAGAAA 57.641 34.783 0.00 0.00 0.00 2.52
3534 3604 5.119694 GTTTTGTGGGGTGCATTTAAAGAA 58.880 37.500 0.00 0.00 0.00 2.52
3535 3605 4.698575 GTTTTGTGGGGTGCATTTAAAGA 58.301 39.130 0.00 0.00 0.00 2.52
3536 3606 3.492756 CGTTTTGTGGGGTGCATTTAAAG 59.507 43.478 0.00 0.00 0.00 1.85
3537 3607 3.118738 ACGTTTTGTGGGGTGCATTTAAA 60.119 39.130 0.00 0.00 0.00 1.52
3538 3608 2.431057 ACGTTTTGTGGGGTGCATTTAA 59.569 40.909 0.00 0.00 0.00 1.52
3539 3609 2.032620 ACGTTTTGTGGGGTGCATTTA 58.967 42.857 0.00 0.00 0.00 1.40
3540 3610 0.827368 ACGTTTTGTGGGGTGCATTT 59.173 45.000 0.00 0.00 0.00 2.32
3541 3611 1.338655 GTACGTTTTGTGGGGTGCATT 59.661 47.619 0.00 0.00 0.00 3.56
3542 3612 0.955905 GTACGTTTTGTGGGGTGCAT 59.044 50.000 0.00 0.00 0.00 3.96
3543 3613 0.393944 TGTACGTTTTGTGGGGTGCA 60.394 50.000 0.00 0.00 0.00 4.57
3544 3614 0.029700 GTGTACGTTTTGTGGGGTGC 59.970 55.000 0.00 0.00 0.00 5.01
3545 3615 0.305313 CGTGTACGTTTTGTGGGGTG 59.695 55.000 0.00 0.00 34.11 4.61
3546 3616 0.814812 CCGTGTACGTTTTGTGGGGT 60.815 55.000 0.00 0.00 37.74 4.95
3547 3617 0.532417 TCCGTGTACGTTTTGTGGGG 60.532 55.000 0.00 0.00 37.74 4.96
3548 3618 1.515081 ATCCGTGTACGTTTTGTGGG 58.485 50.000 0.00 0.00 37.74 4.61
3549 3619 3.058450 TGTATCCGTGTACGTTTTGTGG 58.942 45.455 0.00 0.00 37.74 4.17
3550 3620 4.914312 ATGTATCCGTGTACGTTTTGTG 57.086 40.909 0.00 0.00 37.74 3.33
3551 3621 5.348451 GGTAATGTATCCGTGTACGTTTTGT 59.652 40.000 0.00 0.00 35.84 2.83
3552 3622 5.348179 TGGTAATGTATCCGTGTACGTTTTG 59.652 40.000 0.00 0.00 35.84 2.44
3553 3623 5.348451 GTGGTAATGTATCCGTGTACGTTTT 59.652 40.000 0.00 0.00 35.84 2.43
3554 3624 4.864247 GTGGTAATGTATCCGTGTACGTTT 59.136 41.667 0.00 0.00 35.84 3.60
3555 3625 4.423732 GTGGTAATGTATCCGTGTACGTT 58.576 43.478 0.00 6.98 37.51 3.99
3556 3626 3.181487 GGTGGTAATGTATCCGTGTACGT 60.181 47.826 3.57 0.00 37.74 3.57
3557 3627 3.374745 GGTGGTAATGTATCCGTGTACG 58.625 50.000 0.00 0.00 39.44 3.67
3558 3628 3.374745 CGGTGGTAATGTATCCGTGTAC 58.625 50.000 0.00 0.00 36.99 2.90
3559 3629 2.223782 GCGGTGGTAATGTATCCGTGTA 60.224 50.000 0.00 0.00 42.62 2.90
3560 3630 1.472026 GCGGTGGTAATGTATCCGTGT 60.472 52.381 0.00 0.00 42.62 4.49
3561 3631 1.214367 GCGGTGGTAATGTATCCGTG 58.786 55.000 0.00 0.00 42.62 4.94
3562 3632 0.825410 TGCGGTGGTAATGTATCCGT 59.175 50.000 0.00 0.00 42.62 4.69
3563 3633 1.798223 CATGCGGTGGTAATGTATCCG 59.202 52.381 0.00 0.00 43.37 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.