Multiple sequence alignment - TraesCS2B01G066800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G066800 chr2B 100.000 3587 0 0 1 3587 33662054 33665640 0.000000e+00 6625.0
1 TraesCS2B01G066800 chr2B 90.116 1720 156 9 970 2684 33728331 33730041 0.000000e+00 2222.0
2 TraesCS2B01G066800 chr2B 78.545 275 46 10 3320 3586 456621577 456621308 6.160000e-38 169.0
3 TraesCS2B01G066800 chr2B 100.000 28 0 0 1 28 33688867 33688840 6.000000e-03 52.8
4 TraesCS2B01G066800 chr2A 92.112 2865 194 20 739 3586 21177123 21179972 0.000000e+00 4010.0
5 TraesCS2B01G066800 chr2A 89.221 1707 155 16 922 2609 21006729 21005033 0.000000e+00 2106.0
6 TraesCS2B01G066800 chr2A 85.129 1856 241 24 841 2683 21191479 21193312 0.000000e+00 1866.0
7 TraesCS2B01G066800 chr2A 86.049 1620 216 6 1006 2625 21148240 21149849 0.000000e+00 1731.0
8 TraesCS2B01G066800 chr2A 85.119 168 19 6 585 747 245782480 245782646 2.220000e-37 167.0
9 TraesCS2B01G066800 chr2A 93.000 100 5 2 381 479 422563300 422563202 1.040000e-30 145.0
10 TraesCS2B01G066800 chr2A 86.239 109 9 2 2808 2916 21150128 21150230 2.930000e-21 113.0
11 TraesCS2B01G066800 chr2A 98.182 55 1 0 2645 2699 21181018 21181072 2.950000e-16 97.1
12 TraesCS2B01G066800 chr2D 94.695 2036 104 4 924 2956 20324794 20322760 0.000000e+00 3158.0
13 TraesCS2B01G066800 chr2D 89.592 1739 165 8 953 2684 20381045 20382774 0.000000e+00 2194.0
14 TraesCS2B01G066800 chr2D 85.370 1784 237 11 987 2753 20189074 20187298 0.000000e+00 1827.0
15 TraesCS2B01G066800 chr2D 85.679 1641 223 5 986 2625 20316507 20314878 0.000000e+00 1718.0
16 TraesCS2B01G066800 chr2D 85.665 579 60 16 3017 3585 20322471 20321906 3.990000e-164 588.0
17 TraesCS2B01G066800 chr2D 92.000 150 12 0 733 882 20324956 20324807 1.010000e-50 211.0
18 TraesCS2B01G066800 chr2D 84.689 209 16 7 179 387 20326134 20325942 1.020000e-45 195.0
19 TraesCS2B01G066800 chr2D 98.182 55 1 0 2645 2699 20308965 20308911 2.950000e-16 97.1
20 TraesCS2B01G066800 chr4D 80.882 408 56 18 3194 3586 84607135 84606735 5.820000e-78 302.0
21 TraesCS2B01G066800 chr4D 85.455 165 17 7 587 747 401095861 401095700 7.970000e-37 165.0
22 TraesCS2B01G066800 chr4D 82.692 156 18 8 3436 3586 421111949 421111798 2.910000e-26 130.0
23 TraesCS2B01G066800 chr4D 80.337 178 26 6 3393 3566 84606886 84606714 3.760000e-25 126.0
24 TraesCS2B01G066800 chr4D 80.000 170 26 5 3393 3558 416049743 416049578 6.290000e-23 119.0
25 TraesCS2B01G066800 chr4D 77.833 203 36 6 3389 3586 57054249 57054051 2.260000e-22 117.0
26 TraesCS2B01G066800 chr4D 78.857 175 30 5 3415 3586 132772470 132772640 1.050000e-20 111.0
27 TraesCS2B01G066800 chr4B 79.772 351 53 14 3250 3586 119855017 119854671 4.630000e-59 239.0
28 TraesCS2B01G066800 chr4B 80.263 228 38 7 3364 3586 629232960 629233185 7.970000e-37 165.0
29 TraesCS2B01G066800 chr1B 80.268 299 34 16 3287 3570 375424447 375424159 6.070000e-48 202.0
30 TraesCS2B01G066800 chr1B 80.597 201 30 9 3389 3586 363447884 363448078 2.890000e-31 147.0
31 TraesCS2B01G066800 chr1A 76.596 423 63 22 3194 3586 449465180 449464764 2.180000e-47 200.0
32 TraesCS2B01G066800 chr1A 81.675 191 27 6 3389 3576 353654599 353654784 6.200000e-33 152.0
33 TraesCS2B01G066800 chr1A 79.602 201 35 5 3389 3586 331927307 331927504 4.830000e-29 139.0
34 TraesCS2B01G066800 chr7A 77.311 357 50 24 3251 3585 144649091 144648744 7.910000e-42 182.0
35 TraesCS2B01G066800 chr7A 86.503 163 16 5 588 746 32959796 32959956 1.320000e-39 174.0
36 TraesCS2B01G066800 chr5A 87.117 163 15 5 588 746 697731785 697731945 2.850000e-41 180.0
37 TraesCS2B01G066800 chr5B 86.310 168 18 4 584 747 712462370 712462204 1.020000e-40 178.0
38 TraesCS2B01G066800 chr5B 81.407 199 31 6 3391 3586 629082515 629082320 1.330000e-34 158.0
39 TraesCS2B01G066800 chr3B 83.756 197 23 9 3394 3586 27380884 27381075 1.020000e-40 178.0
40 TraesCS2B01G066800 chr3B 85.629 167 17 5 585 746 78399839 78400003 6.160000e-38 169.0
41 TraesCS2B01G066800 chr5D 85.632 174 18 5 580 747 12270511 12270339 3.680000e-40 176.0
42 TraesCS2B01G066800 chr5D 80.905 199 32 5 3391 3586 498931630 498931435 6.200000e-33 152.0
43 TraesCS2B01G066800 chr5D 95.699 93 3 1 383 474 413056172 413056264 8.020000e-32 148.0
44 TraesCS2B01G066800 chr5D 81.977 172 21 8 3391 3558 498931587 498931422 1.740000e-28 137.0
45 TraesCS2B01G066800 chr3A 84.127 189 22 7 3403 3586 580810685 580810870 3.680000e-40 176.0
46 TraesCS2B01G066800 chr4A 85.119 168 19 5 585 747 204180664 204180498 2.220000e-37 167.0
47 TraesCS2B01G066800 chr4A 85.030 167 19 5 585 746 244230025 244230190 7.970000e-37 165.0
48 TraesCS2B01G066800 chr7B 75.467 428 54 29 3191 3586 64065739 64065331 1.030000e-35 161.0
49 TraesCS2B01G066800 chr7B 82.857 175 23 6 3403 3572 31592379 31592207 2.230000e-32 150.0
50 TraesCS2B01G066800 chr3D 81.683 202 28 7 3390 3586 10004923 10004726 3.710000e-35 159.0
51 TraesCS2B01G066800 chr7D 80.905 199 29 8 3393 3586 188983762 188983568 8.020000e-32 148.0
52 TraesCS2B01G066800 chr7D 92.233 103 5 3 384 483 505592733 505592835 3.730000e-30 143.0
53 TraesCS2B01G066800 chr6B 94.737 95 5 0 381 475 719861644 719861550 8.020000e-32 148.0
54 TraesCS2B01G066800 chrUn 93.814 97 4 2 384 479 82709975 82710070 1.040000e-30 145.0
55 TraesCS2B01G066800 chrUn 92.857 98 7 0 386 483 48472395 48472298 3.730000e-30 143.0
56 TraesCS2B01G066800 chrUn 92.857 98 7 0 386 483 235114496 235114399 3.730000e-30 143.0
57 TraesCS2B01G066800 chrUn 92.857 98 7 0 386 483 433967108 433967205 3.730000e-30 143.0
58 TraesCS2B01G066800 chrUn 81.429 140 17 7 3443 3576 21365578 21365442 4.900000e-19 106.0
59 TraesCS2B01G066800 chrUn 82.114 123 19 3 3464 3585 21365755 21365635 6.340000e-18 102.0
60 TraesCS2B01G066800 chrUn 74.648 213 41 10 3383 3586 22042954 22042746 8.250000e-12 82.4
61 TraesCS2B01G066800 chr1D 79.803 203 34 6 3389 3586 2385854 2386054 1.340000e-29 141.0
62 TraesCS2B01G066800 chr1D 91.429 105 6 3 372 476 464771387 464771286 1.340000e-29 141.0
63 TraesCS2B01G066800 chr1D 80.000 185 25 10 3394 3572 17655106 17654928 3.760000e-25 126.0
64 TraesCS2B01G066800 chr6D 77.833 203 33 10 3389 3586 801004 801199 8.140000e-22 115.0
65 TraesCS2B01G066800 chr6D 85.714 105 13 2 3482 3585 82087109 82087212 3.790000e-20 110.0
66 TraesCS2B01G066800 chr6D 77.720 193 32 11 3390 3575 138391284 138391472 1.360000e-19 108.0
67 TraesCS2B01G066800 chr6D 90.769 65 4 2 3524 3586 800925 800989 6.380000e-13 86.1
68 TraesCS2B01G066800 chr6D 86.111 72 5 5 3517 3586 115639590 115639658 4.970000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G066800 chr2B 33662054 33665640 3586 False 6625.00 6625 100.00000 1 3587 1 chr2B.!!$F1 3586
1 TraesCS2B01G066800 chr2B 33728331 33730041 1710 False 2222.00 2222 90.11600 970 2684 1 chr2B.!!$F2 1714
2 TraesCS2B01G066800 chr2A 21005033 21006729 1696 True 2106.00 2106 89.22100 922 2609 1 chr2A.!!$R1 1687
3 TraesCS2B01G066800 chr2A 21177123 21181072 3949 False 2053.55 4010 95.14700 739 3586 2 chr2A.!!$F4 2847
4 TraesCS2B01G066800 chr2A 21191479 21193312 1833 False 1866.00 1866 85.12900 841 2683 1 chr2A.!!$F1 1842
5 TraesCS2B01G066800 chr2A 21148240 21150230 1990 False 922.00 1731 86.14400 1006 2916 2 chr2A.!!$F3 1910
6 TraesCS2B01G066800 chr2D 20381045 20382774 1729 False 2194.00 2194 89.59200 953 2684 1 chr2D.!!$F1 1731
7 TraesCS2B01G066800 chr2D 20187298 20189074 1776 True 1827.00 1827 85.37000 987 2753 1 chr2D.!!$R1 1766
8 TraesCS2B01G066800 chr2D 20314878 20316507 1629 True 1718.00 1718 85.67900 986 2625 1 chr2D.!!$R3 1639
9 TraesCS2B01G066800 chr2D 20321906 20326134 4228 True 1038.00 3158 89.26225 179 3585 4 chr2D.!!$R4 3406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.649992 TCCTCCCAATGATCCCCTCT 59.35 55.0 0.0 0.0 0.00 3.69 F
1827 2547 0.749649 TGACCAAATGGCAAACGCTT 59.25 45.0 0.0 0.0 39.32 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 2568 0.382873 TGACAACACGTACGCTGAGT 59.617 50.0 16.72 15.26 0.00 3.41 R
2927 5720 0.171903 ATGCGGCAGCTGATGTTTTC 59.828 50.0 20.43 0.00 45.42 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.846665 TTTTCCTCCCAATGATCCCC 57.153 50.000 0.00 0.00 0.00 4.81
31 32 2.000290 TTTCCTCCCAATGATCCCCT 58.000 50.000 0.00 0.00 0.00 4.79
32 33 1.522900 TTCCTCCCAATGATCCCCTC 58.477 55.000 0.00 0.00 0.00 4.30
33 34 0.649992 TCCTCCCAATGATCCCCTCT 59.350 55.000 0.00 0.00 0.00 3.69
34 35 1.011293 TCCTCCCAATGATCCCCTCTT 59.989 52.381 0.00 0.00 0.00 2.85
35 36 1.423161 CCTCCCAATGATCCCCTCTTC 59.577 57.143 0.00 0.00 0.00 2.87
36 37 1.423161 CTCCCAATGATCCCCTCTTCC 59.577 57.143 0.00 0.00 0.00 3.46
37 38 1.011293 TCCCAATGATCCCCTCTTCCT 59.989 52.381 0.00 0.00 0.00 3.36
38 39 1.423161 CCCAATGATCCCCTCTTCCTC 59.577 57.143 0.00 0.00 0.00 3.71
39 40 2.416638 CCAATGATCCCCTCTTCCTCT 58.583 52.381 0.00 0.00 0.00 3.69
40 41 2.782341 CCAATGATCCCCTCTTCCTCTT 59.218 50.000 0.00 0.00 0.00 2.85
41 42 3.203934 CCAATGATCCCCTCTTCCTCTTT 59.796 47.826 0.00 0.00 0.00 2.52
42 43 4.205587 CAATGATCCCCTCTTCCTCTTTG 58.794 47.826 0.00 0.00 0.00 2.77
43 44 2.200081 TGATCCCCTCTTCCTCTTTGG 58.800 52.381 0.00 0.00 37.10 3.28
44 45 2.200955 GATCCCCTCTTCCTCTTTGGT 58.799 52.381 0.00 0.00 37.07 3.67
45 46 2.133858 TCCCCTCTTCCTCTTTGGTT 57.866 50.000 0.00 0.00 37.07 3.67
46 47 2.428901 TCCCCTCTTCCTCTTTGGTTT 58.571 47.619 0.00 0.00 37.07 3.27
47 48 2.789399 TCCCCTCTTCCTCTTTGGTTTT 59.211 45.455 0.00 0.00 37.07 2.43
48 49 3.157881 CCCCTCTTCCTCTTTGGTTTTC 58.842 50.000 0.00 0.00 37.07 2.29
49 50 3.181428 CCCCTCTTCCTCTTTGGTTTTCT 60.181 47.826 0.00 0.00 37.07 2.52
50 51 4.042934 CCCCTCTTCCTCTTTGGTTTTCTA 59.957 45.833 0.00 0.00 37.07 2.10
51 52 5.281245 CCCCTCTTCCTCTTTGGTTTTCTAT 60.281 44.000 0.00 0.00 37.07 1.98
52 53 6.249192 CCCTCTTCCTCTTTGGTTTTCTATT 58.751 40.000 0.00 0.00 37.07 1.73
53 54 6.151817 CCCTCTTCCTCTTTGGTTTTCTATTG 59.848 42.308 0.00 0.00 37.07 1.90
54 55 6.942576 CCTCTTCCTCTTTGGTTTTCTATTGA 59.057 38.462 0.00 0.00 37.07 2.57
55 56 7.613411 CCTCTTCCTCTTTGGTTTTCTATTGAT 59.387 37.037 0.00 0.00 37.07 2.57
56 57 8.940397 TCTTCCTCTTTGGTTTTCTATTGATT 57.060 30.769 0.00 0.00 37.07 2.57
57 58 9.367160 TCTTCCTCTTTGGTTTTCTATTGATTT 57.633 29.630 0.00 0.00 37.07 2.17
58 59 9.987272 CTTCCTCTTTGGTTTTCTATTGATTTT 57.013 29.630 0.00 0.00 37.07 1.82
60 61 9.762933 TCCTCTTTGGTTTTCTATTGATTTTTG 57.237 29.630 0.00 0.00 37.07 2.44
61 62 8.992073 CCTCTTTGGTTTTCTATTGATTTTTGG 58.008 33.333 0.00 0.00 0.00 3.28
62 63 9.546428 CTCTTTGGTTTTCTATTGATTTTTGGT 57.454 29.630 0.00 0.00 0.00 3.67
66 67 9.974980 TTGGTTTTCTATTGATTTTTGGTACTC 57.025 29.630 0.00 0.00 0.00 2.59
67 68 9.362151 TGGTTTTCTATTGATTTTTGGTACTCT 57.638 29.630 0.00 0.00 0.00 3.24
68 69 9.841880 GGTTTTCTATTGATTTTTGGTACTCTC 57.158 33.333 0.00 0.00 0.00 3.20
71 72 9.567776 TTTCTATTGATTTTTGGTACTCTCACA 57.432 29.630 0.00 0.00 0.00 3.58
72 73 8.547967 TCTATTGATTTTTGGTACTCTCACAC 57.452 34.615 0.00 0.00 0.00 3.82
73 74 5.666969 TTGATTTTTGGTACTCTCACACG 57.333 39.130 0.00 0.00 0.00 4.49
74 75 4.951254 TGATTTTTGGTACTCTCACACGA 58.049 39.130 0.00 0.00 0.00 4.35
75 76 5.547465 TGATTTTTGGTACTCTCACACGAT 58.453 37.500 0.00 0.00 0.00 3.73
76 77 5.408299 TGATTTTTGGTACTCTCACACGATG 59.592 40.000 0.00 0.00 0.00 3.84
77 78 2.363788 TTGGTACTCTCACACGATGC 57.636 50.000 0.00 0.00 0.00 3.91
78 79 1.253100 TGGTACTCTCACACGATGCA 58.747 50.000 0.00 0.00 0.00 3.96
79 80 1.616374 TGGTACTCTCACACGATGCAA 59.384 47.619 0.00 0.00 0.00 4.08
80 81 1.993370 GGTACTCTCACACGATGCAAC 59.007 52.381 0.00 0.00 0.00 4.17
81 82 2.609491 GGTACTCTCACACGATGCAACA 60.609 50.000 0.00 0.00 0.00 3.33
82 83 1.502231 ACTCTCACACGATGCAACAC 58.498 50.000 0.00 0.00 0.00 3.32
83 84 1.202521 ACTCTCACACGATGCAACACA 60.203 47.619 0.00 0.00 0.00 3.72
84 85 1.866601 CTCTCACACGATGCAACACAA 59.133 47.619 0.00 0.00 0.00 3.33
85 86 2.284190 TCTCACACGATGCAACACAAA 58.716 42.857 0.00 0.00 0.00 2.83
86 87 2.680339 TCTCACACGATGCAACACAAAA 59.320 40.909 0.00 0.00 0.00 2.44
87 88 3.314913 TCTCACACGATGCAACACAAAAT 59.685 39.130 0.00 0.00 0.00 1.82
88 89 4.039151 TCACACGATGCAACACAAAATT 57.961 36.364 0.00 0.00 0.00 1.82
89 90 5.008118 TCTCACACGATGCAACACAAAATTA 59.992 36.000 0.00 0.00 0.00 1.40
90 91 5.582550 TCACACGATGCAACACAAAATTAA 58.417 33.333 0.00 0.00 0.00 1.40
91 92 6.036470 TCACACGATGCAACACAAAATTAAA 58.964 32.000 0.00 0.00 0.00 1.52
92 93 6.531594 TCACACGATGCAACACAAAATTAAAA 59.468 30.769 0.00 0.00 0.00 1.52
93 94 6.622962 CACACGATGCAACACAAAATTAAAAC 59.377 34.615 0.00 0.00 0.00 2.43
94 95 6.533367 ACACGATGCAACACAAAATTAAAACT 59.467 30.769 0.00 0.00 0.00 2.66
95 96 6.840292 CACGATGCAACACAAAATTAAAACTG 59.160 34.615 0.00 0.00 0.00 3.16
96 97 6.754209 ACGATGCAACACAAAATTAAAACTGA 59.246 30.769 0.00 0.00 0.00 3.41
97 98 7.056800 CGATGCAACACAAAATTAAAACTGAC 58.943 34.615 0.00 0.00 0.00 3.51
98 99 7.253917 CGATGCAACACAAAATTAAAACTGACA 60.254 33.333 0.00 0.00 0.00 3.58
99 100 7.840342 TGCAACACAAAATTAAAACTGACAT 57.160 28.000 0.00 0.00 0.00 3.06
100 101 8.932945 TGCAACACAAAATTAAAACTGACATA 57.067 26.923 0.00 0.00 0.00 2.29
101 102 9.371136 TGCAACACAAAATTAAAACTGACATAA 57.629 25.926 0.00 0.00 0.00 1.90
144 145 7.996098 ATATAAACCAAATCCATACCTTCCG 57.004 36.000 0.00 0.00 0.00 4.30
145 146 4.310022 AAACCAAATCCATACCTTCCGA 57.690 40.909 0.00 0.00 0.00 4.55
146 147 4.310022 AACCAAATCCATACCTTCCGAA 57.690 40.909 0.00 0.00 0.00 4.30
147 148 4.310022 ACCAAATCCATACCTTCCGAAA 57.690 40.909 0.00 0.00 0.00 3.46
148 149 4.668636 ACCAAATCCATACCTTCCGAAAA 58.331 39.130 0.00 0.00 0.00 2.29
149 150 5.269189 ACCAAATCCATACCTTCCGAAAAT 58.731 37.500 0.00 0.00 0.00 1.82
150 151 5.359860 ACCAAATCCATACCTTCCGAAAATC 59.640 40.000 0.00 0.00 0.00 2.17
151 152 5.359576 CCAAATCCATACCTTCCGAAAATCA 59.640 40.000 0.00 0.00 0.00 2.57
152 153 6.127479 CCAAATCCATACCTTCCGAAAATCAA 60.127 38.462 0.00 0.00 0.00 2.57
153 154 7.417797 CCAAATCCATACCTTCCGAAAATCAAT 60.418 37.037 0.00 0.00 0.00 2.57
154 155 7.660030 AATCCATACCTTCCGAAAATCAATT 57.340 32.000 0.00 0.00 0.00 2.32
155 156 7.660030 ATCCATACCTTCCGAAAATCAATTT 57.340 32.000 0.00 0.00 0.00 1.82
156 157 7.095695 TCCATACCTTCCGAAAATCAATTTC 57.904 36.000 0.00 0.00 43.32 2.17
157 158 6.889722 TCCATACCTTCCGAAAATCAATTTCT 59.110 34.615 0.00 0.00 44.35 2.52
158 159 6.974622 CCATACCTTCCGAAAATCAATTTCTG 59.025 38.462 0.00 0.00 44.35 3.02
159 160 7.148086 CCATACCTTCCGAAAATCAATTTCTGA 60.148 37.037 0.00 0.00 44.35 3.27
160 161 6.648879 ACCTTCCGAAAATCAATTTCTGAA 57.351 33.333 7.31 7.31 44.14 3.02
161 162 7.232118 ACCTTCCGAAAATCAATTTCTGAAT 57.768 32.000 7.80 0.00 44.77 2.57
162 163 7.670364 ACCTTCCGAAAATCAATTTCTGAATT 58.330 30.769 7.80 0.00 44.77 2.17
163 164 8.802267 ACCTTCCGAAAATCAATTTCTGAATTA 58.198 29.630 7.80 0.00 44.77 1.40
164 165 9.638239 CCTTCCGAAAATCAATTTCTGAATTAA 57.362 29.630 7.80 0.00 44.77 1.40
167 168 9.840427 TCCGAAAATCAATTTCTGAATTAACTC 57.160 29.630 0.00 0.00 44.35 3.01
168 169 9.846248 CCGAAAATCAATTTCTGAATTAACTCT 57.154 29.630 0.00 0.00 44.35 3.24
203 204 7.729124 ATCAAATCTTCCCAAAATCACATCT 57.271 32.000 0.00 0.00 0.00 2.90
209 210 8.827832 ATCTTCCCAAAATCACATCTAAATCA 57.172 30.769 0.00 0.00 0.00 2.57
319 320 4.243125 TCCTTCCATTCCCTACCCATAT 57.757 45.455 0.00 0.00 0.00 1.78
387 388 8.593492 GTGTAATGCACATGTCAGATCTAATA 57.407 34.615 0.00 0.00 46.91 0.98
388 389 8.491152 GTGTAATGCACATGTCAGATCTAATAC 58.509 37.037 0.00 0.00 46.91 1.89
390 391 9.265901 GTAATGCACATGTCAGATCTAATACTT 57.734 33.333 0.00 0.00 0.00 2.24
391 392 7.959689 ATGCACATGTCAGATCTAATACTTC 57.040 36.000 0.00 0.00 0.00 3.01
392 393 6.283694 TGCACATGTCAGATCTAATACTTCC 58.716 40.000 0.00 0.00 0.00 3.46
393 394 6.098838 TGCACATGTCAGATCTAATACTTCCT 59.901 38.462 0.00 0.00 0.00 3.36
394 395 6.644592 GCACATGTCAGATCTAATACTTCCTC 59.355 42.308 0.00 0.00 0.00 3.71
395 396 7.151308 CACATGTCAGATCTAATACTTCCTCC 58.849 42.308 0.00 0.00 0.00 4.30
396 397 6.015856 ACATGTCAGATCTAATACTTCCTCCG 60.016 42.308 0.00 0.00 0.00 4.63
397 398 5.446860 TGTCAGATCTAATACTTCCTCCGT 58.553 41.667 0.00 0.00 0.00 4.69
398 399 5.892119 TGTCAGATCTAATACTTCCTCCGTT 59.108 40.000 0.00 0.00 0.00 4.44
399 400 6.380274 TGTCAGATCTAATACTTCCTCCGTTT 59.620 38.462 0.00 0.00 0.00 3.60
400 401 6.919115 GTCAGATCTAATACTTCCTCCGTTTC 59.081 42.308 0.00 0.00 0.00 2.78
401 402 6.605995 TCAGATCTAATACTTCCTCCGTTTCA 59.394 38.462 0.00 0.00 0.00 2.69
407 408 9.595823 TCTAATACTTCCTCCGTTTCAAAATAG 57.404 33.333 0.00 0.00 0.00 1.73
408 409 9.595823 CTAATACTTCCTCCGTTTCAAAATAGA 57.404 33.333 0.00 0.00 0.00 1.98
410 411 6.743575 ACTTCCTCCGTTTCAAAATAGATG 57.256 37.500 0.00 0.00 0.00 2.90
411 412 6.472887 ACTTCCTCCGTTTCAAAATAGATGA 58.527 36.000 0.00 0.00 0.00 2.92
412 413 6.371825 ACTTCCTCCGTTTCAAAATAGATGAC 59.628 38.462 0.00 0.00 0.00 3.06
413 414 6.049955 TCCTCCGTTTCAAAATAGATGACT 57.950 37.500 0.00 0.00 0.00 3.41
414 415 6.106673 TCCTCCGTTTCAAAATAGATGACTC 58.893 40.000 0.00 0.00 0.00 3.36
415 416 5.874810 CCTCCGTTTCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
416 417 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
417 418 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
418 419 6.934645 TCCGTTTCAAAATAGATGACTCAACT 59.065 34.615 0.00 0.00 0.00 3.16
421 422 8.895845 CGTTTCAAAATAGATGACTCAACTTTG 58.104 33.333 0.00 0.00 0.00 2.77
422 423 9.736023 GTTTCAAAATAGATGACTCAACTTTGT 57.264 29.630 0.00 0.00 0.00 2.83
425 426 9.778741 TCAAAATAGATGACTCAACTTTGTACT 57.221 29.630 0.00 0.00 0.00 2.73
429 430 9.654663 AATAGATGACTCAACTTTGTACTAACC 57.345 33.333 0.00 0.00 0.00 2.85
430 431 7.304497 AGATGACTCAACTTTGTACTAACCT 57.696 36.000 0.00 0.00 0.00 3.50
431 432 7.736893 AGATGACTCAACTTTGTACTAACCTT 58.263 34.615 0.00 0.00 0.00 3.50
432 433 8.867097 AGATGACTCAACTTTGTACTAACCTTA 58.133 33.333 0.00 0.00 0.00 2.69
433 434 9.141400 GATGACTCAACTTTGTACTAACCTTAG 57.859 37.037 0.00 0.00 36.82 2.18
434 435 8.015185 TGACTCAACTTTGTACTAACCTTAGT 57.985 34.615 3.29 3.29 45.39 2.24
435 436 9.135189 TGACTCAACTTTGTACTAACCTTAGTA 57.865 33.333 1.45 1.45 43.36 1.82
446 447 9.325248 TGTACTAACCTTAGTATAAAGTTGGGT 57.675 33.333 7.94 0.00 45.11 4.51
447 448 9.809096 GTACTAACCTTAGTATAAAGTTGGGTC 57.191 37.037 7.94 0.00 45.11 4.46
448 449 8.439964 ACTAACCTTAGTATAAAGTTGGGTCA 57.560 34.615 0.00 0.00 41.92 4.02
449 450 9.054580 ACTAACCTTAGTATAAAGTTGGGTCAT 57.945 33.333 0.00 0.00 41.92 3.06
450 451 9.543783 CTAACCTTAGTATAAAGTTGGGTCATC 57.456 37.037 0.00 0.00 0.00 2.92
451 452 7.750947 ACCTTAGTATAAAGTTGGGTCATCT 57.249 36.000 0.00 0.00 0.00 2.90
452 453 8.849543 ACCTTAGTATAAAGTTGGGTCATCTA 57.150 34.615 0.00 0.00 0.00 1.98
453 454 9.448587 ACCTTAGTATAAAGTTGGGTCATCTAT 57.551 33.333 0.00 0.00 0.00 1.98
458 459 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
459 460 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
460 461 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
461 462 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
462 463 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
463 464 4.561500 TGGGTCATCTATTTTGGAACGA 57.438 40.909 0.00 0.00 0.00 3.85
464 465 4.912586 TGGGTCATCTATTTTGGAACGAA 58.087 39.130 0.00 0.00 0.00 3.85
465 466 4.941263 TGGGTCATCTATTTTGGAACGAAG 59.059 41.667 0.00 0.00 0.00 3.79
466 467 4.335594 GGGTCATCTATTTTGGAACGAAGG 59.664 45.833 0.00 0.00 0.00 3.46
467 468 4.335594 GGTCATCTATTTTGGAACGAAGGG 59.664 45.833 0.00 0.00 0.00 3.95
468 469 5.183228 GTCATCTATTTTGGAACGAAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
469 470 5.294552 GTCATCTATTTTGGAACGAAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
470 471 4.903045 TCTATTTTGGAACGAAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
471 472 6.155565 TCATCTATTTTGGAACGAAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
472 473 5.974108 TCTATTTTGGAACGAAGGGAGTAG 58.026 41.667 0.00 0.00 0.00 2.57
473 474 4.635699 ATTTTGGAACGAAGGGAGTAGT 57.364 40.909 0.00 0.00 0.00 2.73
474 475 5.750352 ATTTTGGAACGAAGGGAGTAGTA 57.250 39.130 0.00 0.00 0.00 1.82
475 476 5.750352 TTTTGGAACGAAGGGAGTAGTAT 57.250 39.130 0.00 0.00 0.00 2.12
476 477 4.730949 TTGGAACGAAGGGAGTAGTATG 57.269 45.455 0.00 0.00 0.00 2.39
480 481 3.521947 ACGAAGGGAGTAGTATGCAAC 57.478 47.619 0.00 0.00 0.00 4.17
503 504 5.987347 ACACACGTGCAATTAGTTAGTTAGT 59.013 36.000 17.22 0.00 0.00 2.24
549 570 5.687285 GTCAATGAACCTGTGAAAACATGAC 59.313 40.000 0.00 0.00 0.00 3.06
550 571 4.853924 ATGAACCTGTGAAAACATGACC 57.146 40.909 0.00 0.00 0.00 4.02
556 577 5.197451 ACCTGTGAAAACATGACCTAACAA 58.803 37.500 0.00 0.00 0.00 2.83
557 578 5.067283 ACCTGTGAAAACATGACCTAACAAC 59.933 40.000 0.00 0.00 0.00 3.32
563 584 3.508845 ACATGACCTAACAACCTTGCT 57.491 42.857 0.00 0.00 0.00 3.91
565 586 2.270352 TGACCTAACAACCTTGCTGG 57.730 50.000 0.00 0.00 42.93 4.85
576 597 1.066143 ACCTTGCTGGATTGGTAGTCG 60.066 52.381 3.40 0.00 39.71 4.18
583 605 3.119955 GCTGGATTGGTAGTCGGTTTTTC 60.120 47.826 0.00 0.00 0.00 2.29
592 614 4.687948 GGTAGTCGGTTTTTCAACTACTCC 59.312 45.833 10.35 0.00 42.29 3.85
600 622 5.238868 GGTTTTTCAACTACTCCCTCTGTTC 59.761 44.000 0.00 0.00 32.90 3.18
613 635 8.625467 ACTCCCTCTGTTCCTAAATATAAGTT 57.375 34.615 0.00 0.00 0.00 2.66
668 690 5.565259 CGAAGCAAAATGAGTGAATGTACAC 59.435 40.000 0.00 0.00 40.60 2.90
701 724 8.865420 ATGTCTATATACATCCGTGTCTAGTT 57.135 34.615 0.00 0.00 39.77 2.24
716 1028 6.262496 CGTGTCTAGTTCATAGTGGAATCCTA 59.738 42.308 0.00 0.00 32.85 2.94
759 1459 8.732746 ATGTAGGCAGTATCGTTTTATTTCTT 57.267 30.769 0.00 0.00 0.00 2.52
853 1553 6.889198 TGATTCGGAGATCTTAATCTTTGGT 58.111 36.000 19.08 0.00 42.46 3.67
861 1561 7.283127 GGAGATCTTAATCTTTGGTGCACAATA 59.717 37.037 20.43 0.85 42.46 1.90
897 1597 6.270927 TGATTTGGGGAGAGATATCCTAACAG 59.729 42.308 0.00 0.00 39.50 3.16
898 1598 3.511477 TGGGGAGAGATATCCTAACAGC 58.489 50.000 0.00 0.00 39.50 4.40
900 1600 4.164204 GGGGAGAGATATCCTAACAGCTT 58.836 47.826 0.00 0.00 39.50 3.74
901 1601 4.020662 GGGGAGAGATATCCTAACAGCTTG 60.021 50.000 0.00 0.00 39.50 4.01
936 1645 4.079558 AGGATGGGCCATGGCTATATAAAG 60.080 45.833 34.70 0.00 41.60 1.85
983 1692 3.058224 GCACCATGTCAGTGTAGGAAAAC 60.058 47.826 3.08 0.00 37.56 2.43
993 1702 3.584848 AGTGTAGGAAAACAGGCAGATCT 59.415 43.478 0.00 0.00 0.00 2.75
1395 2109 1.153549 GATCGACCTCGCCAAGCTT 60.154 57.895 0.00 0.00 39.60 3.74
1476 2190 2.228059 GGACAGCTCTACTACCGCATA 58.772 52.381 0.00 0.00 0.00 3.14
1481 2195 1.340248 GCTCTACTACCGCATAGCCAA 59.660 52.381 0.00 0.00 33.73 4.52
1599 2319 1.330655 ATGGACTCTCGGCCGACAAT 61.331 55.000 27.28 11.01 0.00 2.71
1731 2451 1.956170 CGTGCTGTCGTGGAAGCTT 60.956 57.895 0.00 0.00 40.21 3.74
1827 2547 0.749649 TGACCAAATGGCAAACGCTT 59.250 45.000 0.00 0.00 39.32 4.68
1848 2568 3.744719 CCGACGCTCCCTGACGAA 61.745 66.667 0.00 0.00 0.00 3.85
1920 2640 2.337532 CTTGGCAACTGCAGCACC 59.662 61.111 15.27 13.43 44.36 5.01
2255 2975 2.114411 GTTCCCCCACCGAAGCAA 59.886 61.111 0.00 0.00 0.00 3.91
2409 3135 0.033796 TGAACTACCGGGACCTCGAT 60.034 55.000 6.32 0.00 0.00 3.59
2450 3176 0.940126 GACGGCATGACAAGCTATGG 59.060 55.000 0.00 0.00 0.00 2.74
2640 5417 5.121768 GTGTTTGACCGAATGTAACTGCTAT 59.878 40.000 0.00 0.00 0.00 2.97
2711 5502 8.778358 GTCCCTAACTAATTATTTCTGCATGAG 58.222 37.037 0.00 0.00 0.00 2.90
2757 5548 4.399303 AGCCCGATAGAATTCAAAACCAAG 59.601 41.667 8.44 0.00 39.76 3.61
2763 5554 8.726988 CCGATAGAATTCAAAACCAAGAAGTTA 58.273 33.333 8.44 0.00 39.76 2.24
2796 5587 2.154567 AATGGGCAGCATCATTCACT 57.845 45.000 7.23 0.00 0.00 3.41
2797 5588 2.154567 ATGGGCAGCATCATTCACTT 57.845 45.000 0.00 0.00 0.00 3.16
2879 5672 6.941436 ACTATAGTCCTAATAACGTCAGGAGG 59.059 42.308 0.00 4.70 39.13 4.30
2927 5720 1.135699 GCATCATGTTCGGCTTTGCG 61.136 55.000 0.00 0.00 0.00 4.85
2935 5728 1.713932 GTTCGGCTTTGCGAAAACATC 59.286 47.619 0.00 0.00 0.00 3.06
2943 5736 1.512734 GCGAAAACATCAGCTGCCG 60.513 57.895 9.47 4.61 0.00 5.69
2945 5738 1.580942 GAAAACATCAGCTGCCGCA 59.419 52.632 9.47 0.00 39.10 5.69
2956 5749 1.818060 AGCTGCCGCATTACAAAATCA 59.182 42.857 2.05 0.00 39.10 2.57
2958 5751 2.992543 GCTGCCGCATTACAAAATCAAA 59.007 40.909 0.00 0.00 35.78 2.69
2959 5752 3.061161 GCTGCCGCATTACAAAATCAAAG 59.939 43.478 0.00 0.00 35.78 2.77
2960 5753 3.583806 TGCCGCATTACAAAATCAAAGG 58.416 40.909 0.00 0.00 0.00 3.11
2961 5754 2.929398 GCCGCATTACAAAATCAAAGGG 59.071 45.455 0.00 0.00 0.00 3.95
2962 5755 3.616317 GCCGCATTACAAAATCAAAGGGT 60.616 43.478 0.00 0.00 0.00 4.34
2963 5756 3.925913 CCGCATTACAAAATCAAAGGGTG 59.074 43.478 0.00 0.00 0.00 4.61
2964 5757 3.367630 CGCATTACAAAATCAAAGGGTGC 59.632 43.478 0.00 0.00 0.00 5.01
2965 5758 3.367630 GCATTACAAAATCAAAGGGTGCG 59.632 43.478 0.00 0.00 0.00 5.34
2966 5759 3.651803 TTACAAAATCAAAGGGTGCGG 57.348 42.857 0.00 0.00 0.00 5.69
2967 5760 0.678950 ACAAAATCAAAGGGTGCGGG 59.321 50.000 0.00 0.00 0.00 6.13
2968 5761 0.037419 CAAAATCAAAGGGTGCGGGG 60.037 55.000 0.00 0.00 0.00 5.73
2969 5762 0.178947 AAAATCAAAGGGTGCGGGGA 60.179 50.000 0.00 0.00 0.00 4.81
2970 5763 0.041090 AAATCAAAGGGTGCGGGGAT 59.959 50.000 0.00 0.00 0.00 3.85
2971 5764 0.684153 AATCAAAGGGTGCGGGGATG 60.684 55.000 0.00 0.00 0.00 3.51
2972 5765 1.570857 ATCAAAGGGTGCGGGGATGA 61.571 55.000 0.00 0.00 0.00 2.92
2973 5766 2.046285 CAAAGGGTGCGGGGATGAC 61.046 63.158 0.00 0.00 0.00 3.06
2974 5767 2.534396 AAAGGGTGCGGGGATGACA 61.534 57.895 0.00 0.00 0.00 3.58
2975 5768 2.484287 AAAGGGTGCGGGGATGACAG 62.484 60.000 0.00 0.00 0.00 3.51
2978 5771 4.451150 GTGCGGGGATGACAGCGA 62.451 66.667 0.00 0.00 0.00 4.93
2979 5772 3.469970 TGCGGGGATGACAGCGAT 61.470 61.111 0.00 0.00 0.00 4.58
2980 5773 2.131067 TGCGGGGATGACAGCGATA 61.131 57.895 0.00 0.00 0.00 2.92
2981 5774 1.069090 GCGGGGATGACAGCGATAA 59.931 57.895 0.00 0.00 0.00 1.75
2982 5775 0.320771 GCGGGGATGACAGCGATAAT 60.321 55.000 0.00 0.00 0.00 1.28
2983 5776 1.067142 GCGGGGATGACAGCGATAATA 60.067 52.381 0.00 0.00 0.00 0.98
2984 5777 2.881074 CGGGGATGACAGCGATAATAG 58.119 52.381 0.00 0.00 0.00 1.73
2985 5778 2.231478 CGGGGATGACAGCGATAATAGT 59.769 50.000 0.00 0.00 0.00 2.12
2986 5779 3.589988 GGGGATGACAGCGATAATAGTG 58.410 50.000 0.00 0.00 0.00 2.74
2987 5780 3.258372 GGGGATGACAGCGATAATAGTGA 59.742 47.826 0.00 0.00 0.00 3.41
2988 5781 4.262463 GGGGATGACAGCGATAATAGTGAA 60.262 45.833 0.00 0.00 0.00 3.18
2989 5782 4.686554 GGGATGACAGCGATAATAGTGAAC 59.313 45.833 0.00 0.00 0.00 3.18
2990 5783 5.509840 GGGATGACAGCGATAATAGTGAACT 60.510 44.000 0.00 0.00 0.00 3.01
2991 5784 5.986135 GGATGACAGCGATAATAGTGAACTT 59.014 40.000 0.00 0.00 0.00 2.66
2992 5785 7.145985 GGATGACAGCGATAATAGTGAACTTA 58.854 38.462 0.00 0.00 0.00 2.24
2993 5786 7.115095 GGATGACAGCGATAATAGTGAACTTAC 59.885 40.741 0.00 0.00 0.00 2.34
2994 5787 6.859017 TGACAGCGATAATAGTGAACTTACA 58.141 36.000 0.00 0.00 0.00 2.41
2995 5788 7.489160 TGACAGCGATAATAGTGAACTTACAT 58.511 34.615 0.00 0.00 0.00 2.29
2996 5789 7.435192 TGACAGCGATAATAGTGAACTTACATG 59.565 37.037 0.00 0.00 0.00 3.21
2997 5790 7.265673 ACAGCGATAATAGTGAACTTACATGT 58.734 34.615 2.69 2.69 0.00 3.21
2998 5791 8.410912 ACAGCGATAATAGTGAACTTACATGTA 58.589 33.333 0.08 0.08 0.00 2.29
2999 5792 9.244799 CAGCGATAATAGTGAACTTACATGTAA 57.755 33.333 17.16 17.16 0.00 2.41
3000 5793 9.982651 AGCGATAATAGTGAACTTACATGTAAT 57.017 29.630 18.35 5.09 0.00 1.89
3027 6048 2.283298 CATGCGGTAAGTGCTCTCATT 58.717 47.619 0.00 0.00 0.00 2.57
3036 6057 0.253044 GTGCTCTCATTAGTGGGCCA 59.747 55.000 0.00 0.00 0.00 5.36
3112 6133 1.477740 GGAAGATGGGCTAAAGGGAGC 60.478 57.143 0.00 0.00 42.05 4.70
3114 6135 1.298953 AGATGGGCTAAAGGGAGCAA 58.701 50.000 0.00 0.00 44.76 3.91
3118 6139 2.178580 TGGGCTAAAGGGAGCAAAATG 58.821 47.619 0.00 0.00 44.76 2.32
3126 6147 1.384222 GGGAGCAAAATGGCCCTACG 61.384 60.000 0.00 0.00 37.59 3.51
3164 6185 1.825474 CCAGACTACATCGGGACAACT 59.175 52.381 0.00 0.00 45.06 3.16
3174 6195 1.133598 TCGGGACAACTGCTACATACG 59.866 52.381 0.00 0.00 0.00 3.06
3176 6197 0.921347 GGACAACTGCTACATACGCG 59.079 55.000 3.53 3.53 0.00 6.01
3213 6234 4.514401 CACCCCTATTTCTCGCTTTAAGT 58.486 43.478 0.00 0.00 0.00 2.24
3228 6249 0.984230 TAAGTGAGCACAGGGGAAGG 59.016 55.000 3.19 0.00 0.00 3.46
3229 6250 1.062488 AAGTGAGCACAGGGGAAGGT 61.062 55.000 3.19 0.00 0.00 3.50
3231 6252 0.606673 GTGAGCACAGGGGAAGGTTC 60.607 60.000 0.00 0.00 0.00 3.62
3234 6255 2.742372 CACAGGGGAAGGTTCGCG 60.742 66.667 0.00 0.00 40.65 5.87
3236 6257 2.032071 CAGGGGAAGGTTCGCGTT 59.968 61.111 5.77 0.00 40.65 4.84
3247 6268 2.939261 TTCGCGTTGGGAGGAGACC 61.939 63.158 5.77 0.00 0.00 3.85
3497 6521 9.683069 ATTTGACAATTGTTGAATGAGTACTTC 57.317 29.630 13.36 0.00 0.00 3.01
3498 6522 7.800155 TGACAATTGTTGAATGAGTACTTCA 57.200 32.000 13.36 0.00 40.85 3.02
3499 6523 8.219546 TGACAATTGTTGAATGAGTACTTCAA 57.780 30.769 13.36 4.67 39.77 2.69
3500 6524 8.681806 TGACAATTGTTGAATGAGTACTTCAAA 58.318 29.630 13.36 0.00 42.49 2.69
3501 6525 9.515020 GACAATTGTTGAATGAGTACTTCAAAA 57.485 29.630 13.36 2.87 42.49 2.44
3502 6526 9.868277 ACAATTGTTGAATGAGTACTTCAAAAA 57.132 25.926 4.92 11.89 42.49 1.94
3572 6596 9.248291 GTTGAACAAGTACATGAAAATGTTGAT 57.752 29.630 4.87 0.00 36.08 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.659521 AGGGGATCATTGGGAGGAAAAA 59.340 45.455 0.00 0.00 0.00 1.94
11 12 2.244769 GAGGGGATCATTGGGAGGAAAA 59.755 50.000 0.00 0.00 0.00 2.29
12 13 1.852965 GAGGGGATCATTGGGAGGAAA 59.147 52.381 0.00 0.00 0.00 3.13
13 14 1.011293 AGAGGGGATCATTGGGAGGAA 59.989 52.381 0.00 0.00 0.00 3.36
14 15 0.649992 AGAGGGGATCATTGGGAGGA 59.350 55.000 0.00 0.00 0.00 3.71
15 16 1.423161 GAAGAGGGGATCATTGGGAGG 59.577 57.143 0.00 0.00 0.00 4.30
16 17 1.423161 GGAAGAGGGGATCATTGGGAG 59.577 57.143 0.00 0.00 0.00 4.30
17 18 1.011293 AGGAAGAGGGGATCATTGGGA 59.989 52.381 0.00 0.00 0.00 4.37
18 19 1.423161 GAGGAAGAGGGGATCATTGGG 59.577 57.143 0.00 0.00 0.00 4.12
19 20 2.416638 AGAGGAAGAGGGGATCATTGG 58.583 52.381 0.00 0.00 0.00 3.16
20 21 4.205587 CAAAGAGGAAGAGGGGATCATTG 58.794 47.826 0.00 0.00 0.00 2.82
21 22 3.203934 CCAAAGAGGAAGAGGGGATCATT 59.796 47.826 0.00 0.00 41.22 2.57
22 23 2.782341 CCAAAGAGGAAGAGGGGATCAT 59.218 50.000 0.00 0.00 41.22 2.45
23 24 2.200081 CCAAAGAGGAAGAGGGGATCA 58.800 52.381 0.00 0.00 41.22 2.92
24 25 2.200955 ACCAAAGAGGAAGAGGGGATC 58.799 52.381 0.00 0.00 41.22 3.36
25 26 2.367947 ACCAAAGAGGAAGAGGGGAT 57.632 50.000 0.00 0.00 41.22 3.85
26 27 2.133858 AACCAAAGAGGAAGAGGGGA 57.866 50.000 0.00 0.00 41.22 4.81
27 28 2.980246 AAACCAAAGAGGAAGAGGGG 57.020 50.000 0.00 0.00 41.22 4.79
28 29 4.105754 AGAAAACCAAAGAGGAAGAGGG 57.894 45.455 0.00 0.00 41.22 4.30
29 30 6.942576 TCAATAGAAAACCAAAGAGGAAGAGG 59.057 38.462 0.00 0.00 41.22 3.69
30 31 7.986085 TCAATAGAAAACCAAAGAGGAAGAG 57.014 36.000 0.00 0.00 41.22 2.85
31 32 8.940397 AATCAATAGAAAACCAAAGAGGAAGA 57.060 30.769 0.00 0.00 41.22 2.87
32 33 9.987272 AAAATCAATAGAAAACCAAAGAGGAAG 57.013 29.630 0.00 0.00 41.22 3.46
34 35 9.762933 CAAAAATCAATAGAAAACCAAAGAGGA 57.237 29.630 0.00 0.00 41.22 3.71
35 36 8.992073 CCAAAAATCAATAGAAAACCAAAGAGG 58.008 33.333 0.00 0.00 45.67 3.69
36 37 9.546428 ACCAAAAATCAATAGAAAACCAAAGAG 57.454 29.630 0.00 0.00 0.00 2.85
40 41 9.974980 GAGTACCAAAAATCAATAGAAAACCAA 57.025 29.630 0.00 0.00 0.00 3.67
41 42 9.362151 AGAGTACCAAAAATCAATAGAAAACCA 57.638 29.630 0.00 0.00 0.00 3.67
42 43 9.841880 GAGAGTACCAAAAATCAATAGAAAACC 57.158 33.333 0.00 0.00 0.00 3.27
45 46 9.567776 TGTGAGAGTACCAAAAATCAATAGAAA 57.432 29.630 0.00 0.00 0.00 2.52
46 47 8.999431 GTGTGAGAGTACCAAAAATCAATAGAA 58.001 33.333 0.00 0.00 0.00 2.10
47 48 7.330946 CGTGTGAGAGTACCAAAAATCAATAGA 59.669 37.037 0.00 0.00 0.00 1.98
48 49 7.330946 TCGTGTGAGAGTACCAAAAATCAATAG 59.669 37.037 0.00 0.00 0.00 1.73
49 50 7.156000 TCGTGTGAGAGTACCAAAAATCAATA 58.844 34.615 0.00 0.00 0.00 1.90
50 51 5.995282 TCGTGTGAGAGTACCAAAAATCAAT 59.005 36.000 0.00 0.00 0.00 2.57
51 52 5.361427 TCGTGTGAGAGTACCAAAAATCAA 58.639 37.500 0.00 0.00 0.00 2.57
52 53 4.951254 TCGTGTGAGAGTACCAAAAATCA 58.049 39.130 0.00 0.00 0.00 2.57
53 54 5.671329 GCATCGTGTGAGAGTACCAAAAATC 60.671 44.000 0.00 0.00 0.00 2.17
54 55 4.154195 GCATCGTGTGAGAGTACCAAAAAT 59.846 41.667 0.00 0.00 0.00 1.82
55 56 3.496884 GCATCGTGTGAGAGTACCAAAAA 59.503 43.478 0.00 0.00 0.00 1.94
56 57 3.064207 GCATCGTGTGAGAGTACCAAAA 58.936 45.455 0.00 0.00 0.00 2.44
57 58 2.036604 TGCATCGTGTGAGAGTACCAAA 59.963 45.455 0.00 0.00 0.00 3.28
58 59 1.616374 TGCATCGTGTGAGAGTACCAA 59.384 47.619 0.00 0.00 0.00 3.67
59 60 1.253100 TGCATCGTGTGAGAGTACCA 58.747 50.000 0.00 0.00 0.00 3.25
60 61 1.993370 GTTGCATCGTGTGAGAGTACC 59.007 52.381 0.00 0.00 0.00 3.34
61 62 2.408704 GTGTTGCATCGTGTGAGAGTAC 59.591 50.000 0.00 0.00 0.00 2.73
62 63 2.035321 TGTGTTGCATCGTGTGAGAGTA 59.965 45.455 0.00 0.00 0.00 2.59
63 64 1.202521 TGTGTTGCATCGTGTGAGAGT 60.203 47.619 0.00 0.00 0.00 3.24
64 65 1.501169 TGTGTTGCATCGTGTGAGAG 58.499 50.000 0.00 0.00 0.00 3.20
65 66 1.946745 TTGTGTTGCATCGTGTGAGA 58.053 45.000 0.00 0.00 0.00 3.27
66 67 2.753989 TTTGTGTTGCATCGTGTGAG 57.246 45.000 0.00 0.00 0.00 3.51
67 68 3.706802 ATTTTGTGTTGCATCGTGTGA 57.293 38.095 0.00 0.00 0.00 3.58
68 69 5.879948 TTAATTTTGTGTTGCATCGTGTG 57.120 34.783 0.00 0.00 0.00 3.82
69 70 6.533367 AGTTTTAATTTTGTGTTGCATCGTGT 59.467 30.769 0.00 0.00 0.00 4.49
70 71 6.840292 CAGTTTTAATTTTGTGTTGCATCGTG 59.160 34.615 0.00 0.00 0.00 4.35
71 72 6.754209 TCAGTTTTAATTTTGTGTTGCATCGT 59.246 30.769 0.00 0.00 0.00 3.73
72 73 7.056800 GTCAGTTTTAATTTTGTGTTGCATCG 58.943 34.615 0.00 0.00 0.00 3.84
73 74 7.904094 TGTCAGTTTTAATTTTGTGTTGCATC 58.096 30.769 0.00 0.00 0.00 3.91
74 75 7.840342 TGTCAGTTTTAATTTTGTGTTGCAT 57.160 28.000 0.00 0.00 0.00 3.96
75 76 7.840342 ATGTCAGTTTTAATTTTGTGTTGCA 57.160 28.000 0.00 0.00 0.00 4.08
118 119 9.509956 CGGAAGGTATGGATTTGGTTTATATTA 57.490 33.333 0.00 0.00 0.00 0.98
119 120 8.221944 TCGGAAGGTATGGATTTGGTTTATATT 58.778 33.333 0.00 0.00 0.00 1.28
120 121 7.751646 TCGGAAGGTATGGATTTGGTTTATAT 58.248 34.615 0.00 0.00 0.00 0.86
121 122 7.139287 TCGGAAGGTATGGATTTGGTTTATA 57.861 36.000 0.00 0.00 0.00 0.98
122 123 6.008696 TCGGAAGGTATGGATTTGGTTTAT 57.991 37.500 0.00 0.00 0.00 1.40
123 124 5.438698 TCGGAAGGTATGGATTTGGTTTA 57.561 39.130 0.00 0.00 0.00 2.01
124 125 4.310022 TCGGAAGGTATGGATTTGGTTT 57.690 40.909 0.00 0.00 0.00 3.27
125 126 4.310022 TTCGGAAGGTATGGATTTGGTT 57.690 40.909 0.00 0.00 0.00 3.67
126 127 4.310022 TTTCGGAAGGTATGGATTTGGT 57.690 40.909 0.00 0.00 0.00 3.67
127 128 5.359576 TGATTTTCGGAAGGTATGGATTTGG 59.640 40.000 0.00 0.00 0.00 3.28
128 129 6.449635 TGATTTTCGGAAGGTATGGATTTG 57.550 37.500 0.00 0.00 0.00 2.32
129 130 7.660030 ATTGATTTTCGGAAGGTATGGATTT 57.340 32.000 0.00 0.00 0.00 2.17
130 131 7.660030 AATTGATTTTCGGAAGGTATGGATT 57.340 32.000 0.00 0.00 0.00 3.01
131 132 7.561356 AGAAATTGATTTTCGGAAGGTATGGAT 59.439 33.333 0.00 0.00 46.89 3.41
132 133 6.889722 AGAAATTGATTTTCGGAAGGTATGGA 59.110 34.615 0.00 0.00 46.89 3.41
133 134 6.974622 CAGAAATTGATTTTCGGAAGGTATGG 59.025 38.462 0.00 0.00 46.89 2.74
134 135 7.761409 TCAGAAATTGATTTTCGGAAGGTATG 58.239 34.615 1.26 0.00 46.89 2.39
135 136 7.938140 TCAGAAATTGATTTTCGGAAGGTAT 57.062 32.000 1.26 0.00 46.89 2.73
136 137 7.753309 TTCAGAAATTGATTTTCGGAAGGTA 57.247 32.000 9.99 0.00 46.60 3.08
137 138 6.648879 TTCAGAAATTGATTTTCGGAAGGT 57.351 33.333 9.99 0.00 46.60 3.50
141 142 9.840427 GAGTTAATTCAGAAATTGATTTTCGGA 57.160 29.630 0.00 0.00 46.89 4.55
142 143 9.846248 AGAGTTAATTCAGAAATTGATTTTCGG 57.154 29.630 0.44 0.00 46.89 4.30
176 177 9.223099 GATGTGATTTTGGGAAGATTTGATTTT 57.777 29.630 0.00 0.00 0.00 1.82
177 178 8.599792 AGATGTGATTTTGGGAAGATTTGATTT 58.400 29.630 0.00 0.00 0.00 2.17
186 187 9.709495 TTTTGATTTAGATGTGATTTTGGGAAG 57.291 29.630 0.00 0.00 0.00 3.46
290 291 5.958380 GGTAGGGAATGGAAGGAAATCTTTT 59.042 40.000 0.00 0.00 35.50 2.27
294 295 3.204382 TGGGTAGGGAATGGAAGGAAATC 59.796 47.826 0.00 0.00 0.00 2.17
300 301 5.582950 TGAATATGGGTAGGGAATGGAAG 57.417 43.478 0.00 0.00 0.00 3.46
303 304 6.314120 TGATTTGAATATGGGTAGGGAATGG 58.686 40.000 0.00 0.00 0.00 3.16
338 339 9.726232 CACACACCATATTGAAGATTTTGATAG 57.274 33.333 0.00 0.00 0.00 2.08
387 388 6.371825 GTCATCTATTTTGAAACGGAGGAAGT 59.628 38.462 0.00 0.00 0.00 3.01
388 389 6.595716 AGTCATCTATTTTGAAACGGAGGAAG 59.404 38.462 0.00 0.00 0.00 3.46
390 391 6.049955 AGTCATCTATTTTGAAACGGAGGA 57.950 37.500 0.00 0.00 0.00 3.71
391 392 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
392 393 6.968131 TGAGTCATCTATTTTGAAACGGAG 57.032 37.500 0.00 0.00 0.00 4.63
393 394 6.934645 AGTTGAGTCATCTATTTTGAAACGGA 59.065 34.615 1.70 0.00 0.00 4.69
394 395 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
395 396 8.895845 CAAAGTTGAGTCATCTATTTTGAAACG 58.104 33.333 4.14 0.00 38.91 3.60
396 397 9.736023 ACAAAGTTGAGTCATCTATTTTGAAAC 57.264 29.630 15.99 0.00 38.91 2.78
399 400 9.778741 AGTACAAAGTTGAGTCATCTATTTTGA 57.221 29.630 15.99 3.46 38.91 2.69
407 408 7.964604 AAGGTTAGTACAAAGTTGAGTCATC 57.035 36.000 0.00 0.00 0.00 2.92
408 409 8.648693 ACTAAGGTTAGTACAAAGTTGAGTCAT 58.351 33.333 0.32 0.00 41.92 3.06
421 422 9.809096 GACCCAACTTTATACTAAGGTTAGTAC 57.191 37.037 11.02 0.00 45.86 2.73
422 423 9.545928 TGACCCAACTTTATACTAAGGTTAGTA 57.454 33.333 11.17 11.17 46.74 1.82
423 424 8.439964 TGACCCAACTTTATACTAAGGTTAGT 57.560 34.615 7.52 7.52 45.39 2.24
424 425 9.543783 GATGACCCAACTTTATACTAAGGTTAG 57.456 37.037 0.00 0.00 36.82 2.34
425 426 9.275572 AGATGACCCAACTTTATACTAAGGTTA 57.724 33.333 0.00 0.00 0.00 2.85
426 427 8.159229 AGATGACCCAACTTTATACTAAGGTT 57.841 34.615 0.00 0.00 0.00 3.50
427 428 7.750947 AGATGACCCAACTTTATACTAAGGT 57.249 36.000 0.00 0.00 0.00 3.50
432 433 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
433 434 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
434 435 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
435 436 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
436 437 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
437 438 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
438 439 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
439 440 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
440 441 4.698304 TCGTTCCAAAATAGATGACCCAAC 59.302 41.667 0.00 0.00 0.00 3.77
441 442 4.912586 TCGTTCCAAAATAGATGACCCAA 58.087 39.130 0.00 0.00 0.00 4.12
442 443 4.561500 TCGTTCCAAAATAGATGACCCA 57.438 40.909 0.00 0.00 0.00 4.51
443 444 4.335594 CCTTCGTTCCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
444 445 4.335594 CCCTTCGTTCCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
445 446 5.183228 TCCCTTCGTTCCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
446 447 5.045869 ACTCCCTTCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
447 448 5.186198 ACTCCCTTCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
448 449 5.437191 ACTCCCTTCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
449 450 4.903045 ACTCCCTTCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
450 451 5.731591 ACTACTCCCTTCGTTCCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
451 452 5.750352 ACTACTCCCTTCGTTCCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
452 453 4.635699 ACTACTCCCTTCGTTCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
453 454 5.484715 CATACTACTCCCTTCGTTCCAAAA 58.515 41.667 0.00 0.00 0.00 2.44
454 455 4.622220 GCATACTACTCCCTTCGTTCCAAA 60.622 45.833 0.00 0.00 0.00 3.28
455 456 3.118884 GCATACTACTCCCTTCGTTCCAA 60.119 47.826 0.00 0.00 0.00 3.53
456 457 2.429610 GCATACTACTCCCTTCGTTCCA 59.570 50.000 0.00 0.00 0.00 3.53
457 458 2.429610 TGCATACTACTCCCTTCGTTCC 59.570 50.000 0.00 0.00 0.00 3.62
458 459 3.795623 TGCATACTACTCCCTTCGTTC 57.204 47.619 0.00 0.00 0.00 3.95
459 460 3.259876 TGTTGCATACTACTCCCTTCGTT 59.740 43.478 0.00 0.00 0.00 3.85
460 461 2.829720 TGTTGCATACTACTCCCTTCGT 59.170 45.455 0.00 0.00 0.00 3.85
461 462 3.187700 GTGTTGCATACTACTCCCTTCG 58.812 50.000 0.00 0.00 0.00 3.79
462 463 3.933332 GTGTGTTGCATACTACTCCCTTC 59.067 47.826 0.00 0.00 0.00 3.46
463 464 3.616560 CGTGTGTTGCATACTACTCCCTT 60.617 47.826 0.00 0.00 0.00 3.95
464 465 2.094182 CGTGTGTTGCATACTACTCCCT 60.094 50.000 0.00 0.00 0.00 4.20
465 466 2.268298 CGTGTGTTGCATACTACTCCC 58.732 52.381 0.00 0.00 0.00 4.30
466 467 2.666508 CACGTGTGTTGCATACTACTCC 59.333 50.000 7.58 0.00 0.00 3.85
467 468 2.092211 GCACGTGTGTTGCATACTACTC 59.908 50.000 18.38 0.00 0.00 2.59
468 469 2.066262 GCACGTGTGTTGCATACTACT 58.934 47.619 18.38 0.00 0.00 2.57
469 470 1.795872 TGCACGTGTGTTGCATACTAC 59.204 47.619 18.38 0.00 33.24 2.73
470 471 2.156343 TGCACGTGTGTTGCATACTA 57.844 45.000 18.38 0.00 33.24 1.82
471 472 1.304254 TTGCACGTGTGTTGCATACT 58.696 45.000 18.38 0.00 38.43 2.12
472 473 2.330231 ATTGCACGTGTGTTGCATAC 57.670 45.000 18.38 0.00 38.43 2.39
473 474 3.500299 ACTAATTGCACGTGTGTTGCATA 59.500 39.130 18.38 0.00 38.43 3.14
474 475 2.293122 ACTAATTGCACGTGTGTTGCAT 59.707 40.909 18.38 0.00 38.43 3.96
475 476 1.673400 ACTAATTGCACGTGTGTTGCA 59.327 42.857 18.38 5.36 36.72 4.08
476 477 2.399396 ACTAATTGCACGTGTGTTGC 57.601 45.000 18.38 2.22 0.00 4.17
480 481 6.462073 ACTAACTAACTAATTGCACGTGTG 57.538 37.500 18.38 0.00 0.00 3.82
503 504 8.211116 TGACGACAAAAACTGGAATACTTAAA 57.789 30.769 0.00 0.00 0.00 1.52
521 522 2.900716 TCACAGGTTCATTGACGACA 57.099 45.000 0.00 0.00 0.00 4.35
549 570 2.493278 CCAATCCAGCAAGGTTGTTAGG 59.507 50.000 0.00 0.00 39.02 2.69
550 571 3.157087 ACCAATCCAGCAAGGTTGTTAG 58.843 45.455 0.00 0.00 39.02 2.34
556 577 1.066143 CGACTACCAATCCAGCAAGGT 60.066 52.381 0.00 0.00 39.02 3.50
557 578 1.656652 CGACTACCAATCCAGCAAGG 58.343 55.000 0.00 0.00 39.47 3.61
563 584 4.088056 TGAAAAACCGACTACCAATCCA 57.912 40.909 0.00 0.00 0.00 3.41
565 586 5.684550 AGTTGAAAAACCGACTACCAATC 57.315 39.130 0.00 0.00 0.00 2.67
576 597 4.715713 ACAGAGGGAGTAGTTGAAAAACC 58.284 43.478 0.00 0.00 0.00 3.27
583 605 5.740290 TTTAGGAACAGAGGGAGTAGTTG 57.260 43.478 0.00 0.00 0.00 3.16
635 657 8.352752 TCACTCATTTTGCTTCGTATATAGTG 57.647 34.615 0.00 0.00 0.00 2.74
636 658 8.942338 TTCACTCATTTTGCTTCGTATATAGT 57.058 30.769 0.00 0.00 0.00 2.12
645 667 6.672147 AGTGTACATTCACTCATTTTGCTTC 58.328 36.000 0.00 0.00 44.07 3.86
690 713 4.713824 TTCCACTATGAACTAGACACGG 57.286 45.455 0.00 0.00 0.00 4.94
691 714 5.067936 AGGATTCCACTATGAACTAGACACG 59.932 44.000 5.29 0.00 0.00 4.49
694 717 8.915036 TCTTTAGGATTCCACTATGAACTAGAC 58.085 37.037 5.29 0.00 0.00 2.59
735 1047 9.826574 ATAAGAAATAAAACGATACTGCCTACA 57.173 29.630 0.00 0.00 0.00 2.74
812 1512 6.260936 TCCGAATCAAGAATAGAATGAAAGGC 59.739 38.462 0.00 0.00 0.00 4.35
826 1526 7.712639 CCAAAGATTAAGATCTCCGAATCAAGA 59.287 37.037 19.38 0.00 41.78 3.02
853 1553 8.034215 CCAAATCAAGTAGGAATTTATTGTGCA 58.966 33.333 0.00 0.00 0.00 4.57
861 1561 6.011628 TCTCTCCCCAAATCAAGTAGGAATTT 60.012 38.462 0.00 0.00 0.00 1.82
900 1600 2.423373 GCCCATCCTTATCTTGAAGGCA 60.423 50.000 0.00 0.00 44.98 4.75
901 1601 2.234143 GCCCATCCTTATCTTGAAGGC 58.766 52.381 0.00 0.00 44.98 4.35
919 1628 3.267031 ACCTCCTTTATATAGCCATGGCC 59.733 47.826 33.14 15.39 43.17 5.36
920 1629 4.019321 TCACCTCCTTTATATAGCCATGGC 60.019 45.833 30.12 30.12 42.33 4.40
936 1645 6.777213 TCTGTTCTACTCTATTTCACCTCC 57.223 41.667 0.00 0.00 0.00 4.30
993 1702 1.337703 GCCATGCTTGCCATTTCGATA 59.662 47.619 0.00 0.00 29.71 2.92
1070 1781 1.208535 AGTCGTTGTTGTTGGAGGACA 59.791 47.619 0.00 0.00 32.31 4.02
1108 1822 2.825836 CTGGCTGGGGATGTTCGC 60.826 66.667 0.00 0.00 0.00 4.70
1363 2077 3.554692 GATCACCGCGAACGCCTG 61.555 66.667 8.23 9.00 38.22 4.85
1459 2173 1.068194 GGCTATGCGGTAGTAGAGCTG 60.068 57.143 0.00 0.00 44.78 4.24
1599 2319 1.306148 CCATACTAGCGTCGAGGACA 58.694 55.000 9.75 0.00 32.09 4.02
1834 2554 1.901948 TGAGTTCGTCAGGGAGCGT 60.902 57.895 0.00 0.00 0.00 5.07
1848 2568 0.382873 TGACAACACGTACGCTGAGT 59.617 50.000 16.72 15.26 0.00 3.41
1920 2640 4.444024 CGCATTGTCGCCACCACG 62.444 66.667 0.00 0.00 0.00 4.94
1971 2691 1.066358 CAGCTCATCTCCTTGCAGTCA 60.066 52.381 0.00 0.00 0.00 3.41
2172 2892 2.447379 AGGATGAGCTGCCCCGAT 60.447 61.111 0.00 0.00 0.00 4.18
2196 2916 0.395173 GGCCCATTATTCCACCGTGT 60.395 55.000 0.00 0.00 0.00 4.49
2228 2948 1.229690 TGGGGGAACGGGATCTTGA 60.230 57.895 0.00 0.00 0.00 3.02
2255 2975 1.618837 ACTGGATGTTGTAGAGCACGT 59.381 47.619 0.00 0.00 0.00 4.49
2409 3135 1.216977 CACCTGGTTCGTGCCGATA 59.783 57.895 0.00 0.00 35.23 2.92
2422 3148 2.815211 CATGCCGTCGACCACCTG 60.815 66.667 10.58 1.75 0.00 4.00
2437 3163 2.025981 TGGCACTTCCATAGCTTGTCAT 60.026 45.455 0.00 0.00 40.72 3.06
2450 3176 1.903404 CCCCACACCTTGGCACTTC 60.903 63.158 0.00 0.00 45.37 3.01
2569 5219 4.223032 CACTAGCTACTCCTTCAAGGGAAA 59.777 45.833 2.75 0.00 35.59 3.13
2598 5252 5.793026 AACACGATTGTTTTGTTTTGCAT 57.207 30.435 0.00 0.00 43.89 3.96
2628 5285 7.655328 GCTCATCAGAACTAATAGCAGTTACAT 59.345 37.037 0.00 0.00 38.86 2.29
2640 5417 9.959721 ATAACCTTTTTAGCTCATCAGAACTAA 57.040 29.630 0.00 0.00 32.20 2.24
2711 5502 7.390918 CTACGTTATATCTGTAGCACCAAAC 57.609 40.000 0.00 0.00 30.29 2.93
2777 5568 2.154567 AGTGAATGATGCTGCCCATT 57.845 45.000 14.43 14.43 35.87 3.16
2865 5658 5.670792 TCAATGTACCTCCTGACGTTATT 57.329 39.130 0.00 0.00 0.00 1.40
2879 5672 4.829064 TGCTGGTTCAAGTTCAATGTAC 57.171 40.909 0.00 0.00 0.00 2.90
2927 5720 0.171903 ATGCGGCAGCTGATGTTTTC 59.828 50.000 20.43 0.00 45.42 2.29
2935 5728 2.187707 GATTTTGTAATGCGGCAGCTG 58.812 47.619 10.11 10.11 45.42 4.24
2943 5736 3.367630 CGCACCCTTTGATTTTGTAATGC 59.632 43.478 0.00 0.00 0.00 3.56
2945 5738 3.056179 CCCGCACCCTTTGATTTTGTAAT 60.056 43.478 0.00 0.00 0.00 1.89
2956 5749 2.355115 GTCATCCCCGCACCCTTT 59.645 61.111 0.00 0.00 0.00 3.11
2958 5751 3.402681 CTGTCATCCCCGCACCCT 61.403 66.667 0.00 0.00 0.00 4.34
2961 5754 2.363711 TATCGCTGTCATCCCCGCAC 62.364 60.000 0.00 0.00 0.00 5.34
2962 5755 1.681486 TTATCGCTGTCATCCCCGCA 61.681 55.000 0.00 0.00 0.00 5.69
2963 5756 0.320771 ATTATCGCTGTCATCCCCGC 60.321 55.000 0.00 0.00 0.00 6.13
2964 5757 2.231478 ACTATTATCGCTGTCATCCCCG 59.769 50.000 0.00 0.00 0.00 5.73
2965 5758 3.258372 TCACTATTATCGCTGTCATCCCC 59.742 47.826 0.00 0.00 0.00 4.81
2966 5759 4.521130 TCACTATTATCGCTGTCATCCC 57.479 45.455 0.00 0.00 0.00 3.85
2967 5760 5.533482 AGTTCACTATTATCGCTGTCATCC 58.467 41.667 0.00 0.00 0.00 3.51
2968 5761 7.648112 TGTAAGTTCACTATTATCGCTGTCATC 59.352 37.037 0.00 0.00 0.00 2.92
2969 5762 7.489160 TGTAAGTTCACTATTATCGCTGTCAT 58.511 34.615 0.00 0.00 0.00 3.06
2970 5763 6.859017 TGTAAGTTCACTATTATCGCTGTCA 58.141 36.000 0.00 0.00 0.00 3.58
2971 5764 7.435488 ACATGTAAGTTCACTATTATCGCTGTC 59.565 37.037 0.00 0.00 0.00 3.51
2972 5765 7.265673 ACATGTAAGTTCACTATTATCGCTGT 58.734 34.615 0.00 0.00 0.00 4.40
2973 5766 7.700322 ACATGTAAGTTCACTATTATCGCTG 57.300 36.000 0.00 0.00 0.00 5.18
2974 5767 9.982651 ATTACATGTAAGTTCACTATTATCGCT 57.017 29.630 22.03 0.00 0.00 4.93
2996 5789 5.501897 GCACTTACCGCATGTAACTGATTAC 60.502 44.000 0.00 0.00 41.07 1.89
2997 5790 4.569162 GCACTTACCGCATGTAACTGATTA 59.431 41.667 0.00 0.00 34.50 1.75
2998 5791 3.374058 GCACTTACCGCATGTAACTGATT 59.626 43.478 0.00 0.00 34.50 2.57
2999 5792 2.936498 GCACTTACCGCATGTAACTGAT 59.064 45.455 0.00 0.00 34.50 2.90
3000 5793 2.028476 AGCACTTACCGCATGTAACTGA 60.028 45.455 0.00 0.00 34.50 3.41
3001 5794 2.346803 AGCACTTACCGCATGTAACTG 58.653 47.619 0.00 0.00 34.50 3.16
3002 5795 2.233922 AGAGCACTTACCGCATGTAACT 59.766 45.455 0.00 0.00 34.50 2.24
3003 5796 2.603560 GAGAGCACTTACCGCATGTAAC 59.396 50.000 0.00 0.00 34.50 2.50
3004 5797 2.232696 TGAGAGCACTTACCGCATGTAA 59.767 45.455 0.00 0.00 37.09 2.41
3005 5798 1.822371 TGAGAGCACTTACCGCATGTA 59.178 47.619 0.00 0.00 0.00 2.29
3006 5799 0.608130 TGAGAGCACTTACCGCATGT 59.392 50.000 0.00 0.00 0.00 3.21
3007 5800 1.945387 ATGAGAGCACTTACCGCATG 58.055 50.000 0.00 0.00 0.00 4.06
3008 5801 2.698855 AATGAGAGCACTTACCGCAT 57.301 45.000 0.00 0.00 0.00 4.73
3009 5802 2.496070 ACTAATGAGAGCACTTACCGCA 59.504 45.455 0.00 0.00 0.00 5.69
3010 5803 2.860735 CACTAATGAGAGCACTTACCGC 59.139 50.000 0.00 0.00 0.00 5.68
3011 5804 3.448686 CCACTAATGAGAGCACTTACCG 58.551 50.000 0.00 0.00 0.00 4.02
3012 5805 3.798202 CCCACTAATGAGAGCACTTACC 58.202 50.000 0.00 0.00 0.00 2.85
3013 5806 3.198872 GCCCACTAATGAGAGCACTTAC 58.801 50.000 0.00 0.00 0.00 2.34
3014 5807 2.170607 GGCCCACTAATGAGAGCACTTA 59.829 50.000 0.00 0.00 0.00 2.24
3015 5808 1.065126 GGCCCACTAATGAGAGCACTT 60.065 52.381 0.00 0.00 0.00 3.16
3036 6057 1.466856 TACGACGCCTATTGTGGACT 58.533 50.000 0.00 0.00 0.00 3.85
3076 6097 0.907704 TTCCTTTCCTAGCCCGAGCA 60.908 55.000 0.00 0.00 43.56 4.26
3078 6099 1.486211 TCTTCCTTTCCTAGCCCGAG 58.514 55.000 0.00 0.00 0.00 4.63
3126 6147 2.957060 GTGCTTTTCACCCCTACCC 58.043 57.895 0.00 0.00 39.79 3.69
3151 6172 0.973632 TGTAGCAGTTGTCCCGATGT 59.026 50.000 0.00 0.00 0.00 3.06
3154 6175 1.133598 CGTATGTAGCAGTTGTCCCGA 59.866 52.381 0.00 0.00 0.00 5.14
3164 6185 4.033129 GGTTATTTTGTCGCGTATGTAGCA 59.967 41.667 5.77 0.00 34.19 3.49
3174 6195 1.323791 GTGCACGGTTATTTTGTCGC 58.676 50.000 0.00 0.00 0.00 5.19
3176 6197 1.068125 GGGGTGCACGGTTATTTTGTC 60.068 52.381 11.45 0.00 0.00 3.18
3213 6234 1.761174 GAACCTTCCCCTGTGCTCA 59.239 57.895 0.00 0.00 0.00 4.26
3228 6249 1.737008 GTCTCCTCCCAACGCGAAC 60.737 63.158 15.93 0.00 0.00 3.95
3229 6250 2.654877 GTCTCCTCCCAACGCGAA 59.345 61.111 15.93 0.00 0.00 4.70
3231 6252 4.452733 GGGTCTCCTCCCAACGCG 62.453 72.222 3.53 3.53 46.30 6.01
3455 6479 9.528018 AATTGTCAAATACTTGTTCGACATTTT 57.472 25.926 0.00 0.00 33.94 1.82
3456 6480 8.967218 CAATTGTCAAATACTTGTTCGACATTT 58.033 29.630 0.00 0.00 33.94 2.32
3457 6481 8.134895 ACAATTGTCAAATACTTGTTCGACATT 58.865 29.630 4.92 0.00 33.94 2.71
3458 6482 7.648142 ACAATTGTCAAATACTTGTTCGACAT 58.352 30.769 4.92 0.00 33.94 3.06
3459 6483 7.022055 ACAATTGTCAAATACTTGTTCGACA 57.978 32.000 4.92 0.00 33.94 4.35
3460 6484 7.642194 TCAACAATTGTCAAATACTTGTTCGAC 59.358 33.333 12.39 0.00 35.44 4.20
3461 6485 7.698628 TCAACAATTGTCAAATACTTGTTCGA 58.301 30.769 12.39 9.54 35.44 3.71
3462 6486 7.906611 TCAACAATTGTCAAATACTTGTTCG 57.093 32.000 12.39 8.02 35.44 3.95
3475 6499 9.515020 TTTTGAAGTACTCATTCAACAATTGTC 57.485 29.630 12.39 0.00 44.17 3.18
3476 6500 9.868277 TTTTTGAAGTACTCATTCAACAATTGT 57.132 25.926 4.92 4.92 44.17 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.