AutoCloner

Multiple sequence alignment - TraesCS2B01G066700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G066700	chr2B	100.000	2801	0	0	1	2801	33580271	33577471	0.000000e+00	5173.0
1	TraesCS2B01G066700	chr2B	94.257	2159	114	6	564	2721	33728709	33730858	0.000000e+00	3291.0
2	TraesCS2B01G066700	chr2B	88.897	1342	132	9	566	1897	33663403	33664737	0.000000e+00	1637.0
3	TraesCS2B01G066700	chr2B	95.199	729	32	2	2073	2801	33800459	33801184	0.000000e+00	1149.0
4	TraesCS2B01G066700	chr2B	85.889	574	54	8	1	558	33695063	33695625	1.120000e-163	586.0
5	TraesCS2B01G066700	chr2D	91.919	1485	111	6	559	2040	20381438	20382916	0.000000e+00	2069.0
6	TraesCS2B01G066700	chr2D	89.493	1342	125	8	566	1897	20324368	20323033	0.000000e+00	1683.0
7	TraesCS2B01G066700	chr2D	86.113	1253	168	4	560	1809	10313603	10314852	0.000000e+00	1345.0
8	TraesCS2B01G066700	chr2D	84.222	1331	193	8	578	1899	20188699	20187377	0.000000e+00	1279.0
9	TraesCS2B01G066700	chr2D	84.622	1255	188	4	570	1822	20316145	20314894	0.000000e+00	1243.0
10	TraesCS2B01G066700	chr2A	88.897	1342	133	8	566	1897	21177733	21179068	0.000000e+00	1639.0
11	TraesCS2B01G066700	chr2A	84.918	1346	188	10	559	1896	21191974	21193312	0.000000e+00	1347.0
12	TraesCS2B01G066700	chr4D	78.333	420	73	9	1	403	324250264	324249846	3.580000e-64	255.0
13	TraesCS2B01G066700	chr5B	77.510	249	46	8	10	253	709170730	709170973	1.050000e-29	141.0
14	TraesCS2B01G066700	chr5B	79.365	126	24	2	80	204	282062518	282062642	1.380000e-13	87.9
15	TraesCS2B01G066700	chr4B	74.667	300	63	11	257	550	449527065	449527357	1.360000e-23	121.0
16	TraesCS2B01G066700	chr4B	80.583	103	19	1	152	254	428578096	428577995	8.320000e-11	78.7
17	TraesCS2B01G066700	chr3D	72.911	395	85	11	12	388	277217221	277216831	1.760000e-22	117.0
18	TraesCS2B01G066700	chr3D	74.894	235	47	9	25	253	539243980	539243752	2.300000e-16	97.1
19	TraesCS2B01G066700	chr1A	85.149	101	15	0	154	254	155222504	155222404	1.370000e-18	104.0
20	TraesCS2B01G066700	chr1D	83.654	104	12	5	153	254	137625392	137625492	2.970000e-15	93.5
21	TraesCS2B01G066700	chr7D	78.261	138	22	8	123	260	575466842	575466713	6.430000e-12	82.4
22	TraesCS2B01G066700	chr7B	73.656	186	41	7	18	199	329774275	329774094	6.480000e-07	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G066700	chr2B	33577471	33580271	2800	True	5173	5173	100.000	1	2801	1	chr2B.!!$R1	2800
1	TraesCS2B01G066700	chr2B	33728709	33730858	2149	False	3291	3291	94.257	564	2721	1	chr2B.!!$F3	2157
2	TraesCS2B01G066700	chr2B	33663403	33664737	1334	False	1637	1637	88.897	566	1897	1	chr2B.!!$F1	1331
3	TraesCS2B01G066700	chr2B	33800459	33801184	725	False	1149	1149	95.199	2073	2801	1	chr2B.!!$F4	728
4	TraesCS2B01G066700	chr2B	33695063	33695625	562	False	586	586	85.889	1	558	1	chr2B.!!$F2	557
5	TraesCS2B01G066700	chr2D	20381438	20382916	1478	False	2069	2069	91.919	559	2040	1	chr2D.!!$F2	1481
6	TraesCS2B01G066700	chr2D	20323033	20324368	1335	True	1683	1683	89.493	566	1897	1	chr2D.!!$R3	1331
7	TraesCS2B01G066700	chr2D	10313603	10314852	1249	False	1345	1345	86.113	560	1809	1	chr2D.!!$F1	1249
8	TraesCS2B01G066700	chr2D	20187377	20188699	1322	True	1279	1279	84.222	578	1899	1	chr2D.!!$R1	1321
9	TraesCS2B01G066700	chr2D	20314894	20316145	1251	True	1243	1243	84.622	570	1822	1	chr2D.!!$R2	1252
10	TraesCS2B01G066700	chr2A	21177733	21179068	1335	False	1639	1639	88.897	566	1897	1	chr2A.!!$F1	1331
11	TraesCS2B01G066700	chr2A	21191974	21193312	1338	False	1347	1347	84.918	559	1896	1	chr2A.!!$F2	1337

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
378	395	0.023732	CGCGTCTTGTACAGCAATCG	59.976	55.0	0.00	5.08	36.36	3.34	F
440	457	0.035534	ACATATGTTGGCGCCAGTGA	60.036	50.0	30.75	17.67	0.00	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1723	1741	0.250901	ACCTTGCGCTTGATCTTGGT	60.251	50.000	9.73	2.27	0.00	3.67	R
1996	2030	3.511934	CCTCTTAGTAGTGGCACAGTCTT	59.488	47.826	21.41	0.31	43.36	3.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	1.471684	GGAAGACCTCGAGCGAACTTA	59.528	52.381	6.99	0.00	0.00	2.24
42	43	2.517935	GAAGACCTCGAGCGAACTTAC	58.482	52.381	6.99	1.33	0.00	2.34
62	63	3.379682	GGCATACCGTACTCGATCG	57.620	57.895	9.36	9.36	39.71	3.69
69	70	0.883814	CCGTACTCGATCGGCCTAGT	60.884	60.000	16.41	13.49	40.28	2.57
116	117	1.891919	GCGGTCACCTTGTGCTTCA	60.892	57.895	0.00	0.00	32.98	3.02
118	119	1.230635	CGGTCACCTTGTGCTTCAGG	61.231	60.000	0.00	0.00	32.98	3.86
127	128	0.904649	TGTGCTTCAGGTCCGATGAT	59.095	50.000	0.00	0.00	0.00	2.45
134	135	3.866703	TCAGGTCCGATGATAGTCTCT	57.133	47.619	0.00	0.00	0.00	3.10
143	144	3.823304	CGATGATAGTCTCTCCCACATCA	59.177	47.826	0.00	0.00	34.34	3.07
144	145	4.279420	CGATGATAGTCTCTCCCACATCAA	59.721	45.833	0.00	0.00	34.34	2.57
164	165	0.179100	GCTAGAGCTTGCGGTCATCA	60.179	55.000	0.00	0.00	40.07	3.07
209	210	1.974875	TGGAGCGGAAGTAGTGCGA	60.975	57.895	0.00	0.00	45.26	5.10
214	215	0.457853	GCGGAAGTAGTGCGATGTGA	60.458	55.000	0.00	0.00	45.26	3.58
254	255	6.447084	TGACCCTCTTTAAATAGTGGATTCCT	59.553	38.462	3.95	0.00	31.85	3.36
255	256	7.036863	TGACCCTCTTTAAATAGTGGATTCCTT	60.037	37.037	3.95	0.00	31.85	3.36
260	277	7.466804	TCTTTAAATAGTGGATTCCTTGGTGT	58.533	34.615	3.95	0.00	0.00	4.16
269	286	3.003689	GGATTCCTTGGTGTATCAATGCG	59.996	47.826	0.00	0.00	0.00	4.73
274	291	2.053116	GTGTATCAATGCGCGGCG	60.053	61.111	19.62	19.62	0.00	6.46
356	373	1.245732	GACGGGCGTGGTAGATATCT	58.754	55.000	10.73	10.73	0.00	1.98
372	389	0.458543	ATCTGCCGCGTCTTGTACAG	60.459	55.000	4.92	0.98	0.00	2.74
376	393	1.635663	GCCGCGTCTTGTACAGCAAT	61.636	55.000	4.92	0.00	36.36	3.56
378	395	0.023732	CGCGTCTTGTACAGCAATCG	59.976	55.000	0.00	5.08	36.36	3.34
385	402	0.526211	TGTACAGCAATCGTCGCTCT	59.474	50.000	0.00	0.00	37.72	4.09
402	419	1.133253	CTGACATTGAACAGGCGCG	59.867	57.895	0.00	0.00	0.00	6.86
420	437	2.941210	GAACCCACTTCGATTGGCA	58.059	52.632	7.88	0.00	32.13	4.92
421	438	1.243902	GAACCCACTTCGATTGGCAA	58.756	50.000	0.68	0.68	32.13	4.52
422	439	0.958822	AACCCACTTCGATTGGCAAC	59.041	50.000	0.00	0.00	32.13	4.17
438	455	3.264574	AACATATGTTGGCGCCAGT	57.735	47.368	30.75	20.10	36.80	4.00
440	457	0.035534	ACATATGTTGGCGCCAGTGA	60.036	50.000	30.75	17.67	0.00	3.41
449	466	3.423154	CGCCAGTGAAAGGTCGCC	61.423	66.667	0.00	0.00	34.60	5.54
450	467	3.056328	GCCAGTGAAAGGTCGCCC	61.056	66.667	0.00	0.00	34.60	6.13
456	473	2.046217	GAAAGGTCGCCCCCACTC	60.046	66.667	0.00	0.00	0.00	3.51
491	508	2.100631	CGGAGCGCCACTTTACAGG	61.101	63.158	7.44	0.00	0.00	4.00
503	520	3.016736	ACTTTACAGGGGCATGAATTCG	58.983	45.455	0.00	0.00	0.00	3.34
508	525	2.057408	GGGGCATGAATTCGGGCAA	61.057	57.895	20.15	0.00	0.00	4.52
509	526	1.141665	GGGCATGAATTCGGGCAAC	59.858	57.895	20.15	10.83	0.00	4.17
534	551	2.485122	GGAAGGAAACGCATGCGG	59.515	61.111	39.95	23.77	44.69	5.69
562	579	1.202830	AGGATGGTTTTGTGTGCGGTA	60.203	47.619	0.00	0.00	0.00	4.02
568	585	0.538516	TTTTGTGTGCGGTAGGCCAT	60.539	50.000	5.01	0.00	42.61	4.40
668	685	3.998672	GTCGAGACCGGGGCAACA	61.999	66.667	6.32	0.00	36.24	3.33
840	857	3.243434	CCTTGACGCTAGTATGGTCGATT	60.243	47.826	0.00	0.00	33.45	3.34
876	893	3.056313	GCGAACAGGAAGGCCATGC	62.056	63.158	5.01	0.00	36.29	4.06
901	918	0.620556	GACCTCTTCTGGGCAATCCA	59.379	55.000	0.00	0.00	44.79	3.41
1040	1058	0.037419	GCGGTCACCAAATGGCAAAT	60.037	50.000	0.00	0.00	39.32	2.32
1046	1064	0.968405	ACCAAATGGCAAATGCTCGT	59.032	45.000	5.25	0.00	41.70	4.18
1072	1090	4.671590	TCCCCGACGACCTCAGCA	62.672	66.667	0.00	0.00	0.00	4.41
1080	1098	0.109272	ACGACCTCAGCATACGTGTG	60.109	55.000	8.09	8.09	35.91	3.82
1083	1101	1.475280	GACCTCAGCATACGTGTGGTA	59.525	52.381	16.78	5.30	40.93	3.25
1111	1129	0.687354	GAGTCAGGCCAACTTCCAGA	59.313	55.000	5.01	0.00	0.00	3.86
1131	1149	1.120530	CCCTATACCTCGGCAACTGT	58.879	55.000	0.00	0.00	0.00	3.55
1290	1308	2.214216	CCTCCTCAACCGGTCCACA	61.214	63.158	8.04	0.00	0.00	4.17
1407	1425	1.299976	GTCGGGGCAACTCATCCTT	59.700	57.895	0.00	0.00	36.02	3.36
1461	1479	0.037590	CCAACAAGATCCCGTTCCCA	59.962	55.000	0.00	0.00	0.00	4.37
1474	1492	2.747443	TTCCCACACCGGAGCAACA	61.747	57.895	9.46	0.00	36.56	3.33
1491	1509	3.191162	GCAACATGCTCTACAACATCCAA	59.809	43.478	0.00	0.00	40.96	3.53
1548	1566	3.259064	CGACATTACACCGAACTGGATT	58.741	45.455	0.00	0.00	42.00	3.01
1673	1691	2.611971	GGGTCACGTGCTATGAAACTGA	60.612	50.000	11.67	0.00	0.00	3.41
1674	1692	3.064207	GGTCACGTGCTATGAAACTGAA	58.936	45.455	11.67	0.00	0.00	3.02
1723	1741	1.270305	CGGCAAACTTCAGGAGACTCA	60.270	52.381	4.53	0.00	40.21	3.41
1875	1907	6.902771	ATAGTTCTGATGAGCTAATACGGT	57.097	37.500	0.00	0.00	38.99	4.83
1962	1996	5.051891	TCTTTCTTATTTTCAGCTGCAGC	57.948	39.130	31.53	31.53	42.49	5.25
2331	2365	8.412456	TCCGAATTATGTTATGCAATGTTGATT	58.588	29.630	0.00	0.00	0.00	2.57
2436	2470	8.203485	ACAACTTGTCATGTGAAAATAATGGTT	58.797	29.630	0.00	0.00	0.00	3.67
2472	2506	6.308766	GCAACTTATTGGTATCACAAGCTTTG	59.691	38.462	0.00	0.00	36.23	2.77
2480	2514	0.178967	TCACAAGCTTTGGATGGGCA	60.179	50.000	0.00	0.00	34.12	5.36
2525	2559	5.578336	TGATTCGAAGAGAACTAGTTGCATG	59.422	40.000	14.14	0.00	42.39	4.06
2598	2632	3.181431	CCTTCTAGGTATCCCCTTCTCGA	60.181	52.174	0.00	0.00	42.73	4.04
2614	2648	2.353579	TCTCGACGCGACTGATTTCATA	59.646	45.455	15.93	0.00	0.00	2.15
2615	2649	3.105937	CTCGACGCGACTGATTTCATAA	58.894	45.455	15.93	0.00	0.00	1.90
2701	2735	1.074405	ACCATGCCTCCATTCGCATAT	59.926	47.619	0.00	0.00	43.75	1.78
2702	2736	2.165167	CCATGCCTCCATTCGCATATT	58.835	47.619	0.00	0.00	43.75	1.28
2703	2737	2.559668	CCATGCCTCCATTCGCATATTT	59.440	45.455	0.00	0.00	43.75	1.40
2739	2773	7.383843	CACGGTATTAGGAAAACAAGCAAAAAT	59.616	33.333	0.00	0.00	0.00	1.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
13	14	4.863984	GAGGTCTTCCACGACGAC	57.136	61.111	0.00	0.00	34.75	4.34
23	24	1.201880	GGTAAGTTCGCTCGAGGTCTT	59.798	52.381	15.58	14.02	0.00	3.01
32	33	0.179092	GGTATGCCGGTAAGTTCGCT	60.179	55.000	1.90	0.00	0.00	4.93
100	101	0.179018	ACCTGAAGCACAAGGTGACC	60.179	55.000	0.00	0.00	35.23	4.02
116	117	2.224917	GGGAGAGACTATCATCGGACCT	60.225	54.545	0.00	0.00	0.00	3.85
118	119	2.554893	GTGGGAGAGACTATCATCGGAC	59.445	54.545	0.00	0.00	0.00	4.79
127	128	3.107402	AGCTTGATGTGGGAGAGACTA	57.893	47.619	0.00	0.00	0.00	2.59
156	157	2.961721	CCGCGTCCATGATGACCG	60.962	66.667	4.92	0.00	31.35	4.79
186	187	0.824759	ACTACTTCCGCTCCACATCC	59.175	55.000	0.00	0.00	0.00	3.51
209	210	4.154195	GTCACACTCGGCTAAATTTCACAT	59.846	41.667	0.00	0.00	0.00	3.21
214	215	2.039879	AGGGTCACACTCGGCTAAATTT	59.960	45.455	0.00	0.00	0.00	1.82
254	255	1.987704	GCCGCGCATTGATACACCAA	61.988	55.000	8.75	0.00	0.00	3.67
255	256	2.468670	GCCGCGCATTGATACACCA	61.469	57.895	8.75	0.00	0.00	4.17
260	277	3.326981	CGACGCCGCGCATTGATA	61.327	61.111	13.88	0.00	0.00	2.15
274	291	1.235281	GCCAAGGAACCAACTCCGAC	61.235	60.000	0.00	0.00	40.75	4.79
356	373	2.736995	GCTGTACAAGACGCGGCA	60.737	61.111	17.71	0.00	0.00	5.69
360	377	1.059264	GACGATTGCTGTACAAGACGC	59.941	52.381	0.00	0.00	42.87	5.19
361	378	1.317611	CGACGATTGCTGTACAAGACG	59.682	52.381	0.00	1.88	42.87	4.18
378	395	1.728971	CCTGTTCAATGTCAGAGCGAC	59.271	52.381	8.96	0.00	45.61	5.19
385	402	0.882484	TTCGCGCCTGTTCAATGTCA	60.882	50.000	0.00	0.00	0.00	3.58
402	419	1.068541	GTTGCCAATCGAAGTGGGTTC	60.069	52.381	17.57	4.68	36.58	3.62
420	437	0.810648	CACTGGCGCCAACATATGTT	59.189	50.000	32.09	15.47	39.12	2.71
421	438	0.035534	TCACTGGCGCCAACATATGT	60.036	50.000	32.09	20.75	0.00	2.29
422	439	1.093972	TTCACTGGCGCCAACATATG	58.906	50.000	32.09	21.73	0.00	1.78
423	440	1.745087	CTTTCACTGGCGCCAACATAT	59.255	47.619	32.09	10.81	0.00	1.78
424	441	1.164411	CTTTCACTGGCGCCAACATA	58.836	50.000	32.09	13.50	0.00	2.29
432	449	3.423154	GGCGACCTTTCACTGGCG	61.423	66.667	0.00	0.00	0.00	5.69
474	491	1.745489	CCCTGTAAAGTGGCGCTCC	60.745	63.158	7.64	0.00	0.00	4.70
482	499	3.016736	CGAATTCATGCCCCTGTAAAGT	58.983	45.455	6.22	0.00	0.00	2.66
485	502	1.409521	CCCGAATTCATGCCCCTGTAA	60.410	52.381	6.22	0.00	0.00	2.41
491	508	1.141665	GTTGCCCGAATTCATGCCC	59.858	57.895	6.22	0.00	0.00	5.36
508	525	3.948719	TTTCCTTCCGGCGCCAGT	61.949	61.111	28.98	0.00	0.00	4.00
509	526	3.431725	GTTTCCTTCCGGCGCCAG	61.432	66.667	28.98	16.96	0.00	4.85
534	551	1.032114	CAAAACCATCCTCCCTCGCC	61.032	60.000	0.00	0.00	0.00	5.54
546	563	1.448922	GCCTACCGCACACAAAACCA	61.449	55.000	0.00	0.00	37.47	3.67
668	685	1.746516	CGGTAGTAGAGCTCTCCGGTT	60.747	57.143	26.17	10.83	39.43	4.44
840	857	2.429930	CAGCAGGTTCCCGTTGGA	59.570	61.111	0.00	0.00	39.54	3.53
876	893	2.711922	CCCAGAAGAGGTCGTCCCG	61.712	68.421	0.00	0.00	38.74	5.14
972	990	1.419374	CGACTTTGAGGAAGGTCACG	58.581	55.000	0.00	0.00	39.79	4.35
1026	1044	1.337074	ACGAGCATTTGCCATTTGGTG	60.337	47.619	0.00	0.00	43.38	4.17
1072	1090	5.801380	ACTCTTTTGGATTACCACACGTAT	58.199	37.500	0.00	0.00	46.80	3.06
1080	1098	3.017442	GGCCTGACTCTTTTGGATTACC	58.983	50.000	0.00	0.00	0.00	2.85
1083	1101	2.893489	GTTGGCCTGACTCTTTTGGATT	59.107	45.455	3.32	0.00	0.00	3.01
1111	1129	1.120530	CAGTTGCCGAGGTATAGGGT	58.879	55.000	0.00	0.00	0.00	4.34
1131	1149	4.367023	GTCGCCACCACCGTGCTA	62.367	66.667	0.00	0.00	38.79	3.49
1182	1200	4.314440	TCCTTGCAGTCCGCGCTT	62.314	61.111	5.56	0.00	46.97	4.68
1290	1308	1.660242	TAACGAAGGGGCCTAAGGTT	58.340	50.000	0.84	6.17	0.00	3.50
1474	1492	4.811024	CACGTATTGGATGTTGTAGAGCAT	59.189	41.667	0.00	0.00	0.00	3.79
1491	1509	0.537188	CCTTCCACAGCTCCACGTAT	59.463	55.000	0.00	0.00	0.00	3.06
1548	1566	1.344065	TGAACTCGTAAAGGCTCCCA	58.656	50.000	0.00	0.00	0.00	4.37
1673	1691	1.073199	CTCTCGCCCCACACCTTTT	59.927	57.895	0.00	0.00	0.00	2.27
1674	1692	2.750350	CTCTCGCCCCACACCTTT	59.250	61.111	0.00	0.00	0.00	3.11
1723	1741	0.250901	ACCTTGCGCTTGATCTTGGT	60.251	50.000	9.73	2.27	0.00	3.67
1872	1904	8.909708	ATTATGTTGACAAATGTTAATGACCG	57.090	30.769	0.00	0.00	0.00	4.79
1939	1973	5.464168	GCTGCAGCTGAAAATAAGAAAGAA	58.536	37.500	31.33	0.00	38.21	2.52
1994	2028	5.185249	CCTCTTAGTAGTGGCACAGTCTTAA	59.815	44.000	21.41	9.58	43.36	1.85
1995	2029	4.705507	CCTCTTAGTAGTGGCACAGTCTTA	59.294	45.833	21.41	7.67	43.36	2.10
1996	2030	3.511934	CCTCTTAGTAGTGGCACAGTCTT	59.488	47.826	21.41	0.31	43.36	3.01
2003	2037	5.824421	AGTAGTAACCTCTTAGTAGTGGCA	58.176	41.667	0.00	0.00	38.37	4.92
2249	2283	7.819900	TCTTACTTCTTCAAATAGCTCCACTTC	59.180	37.037	0.00	0.00	0.00	3.01
2252	2286	7.907214	TTCTTACTTCTTCAAATAGCTCCAC	57.093	36.000	0.00	0.00	0.00	4.02
2318	2352	6.335471	TCTCTTGAACAATCAACATTGCAT	57.665	33.333	0.00	0.00	43.03	3.96
2319	2353	5.771153	TCTCTTGAACAATCAACATTGCA	57.229	34.783	0.00	0.00	43.03	4.08
2323	2357	9.857656	ATATACCATCTCTTGAACAATCAACAT	57.142	29.630	0.00	0.00	40.59	2.71
2331	2365	5.104569	TGGCACATATACCATCTCTTGAACA	60.105	40.000	0.00	0.00	0.00	3.18
2436	2470	3.609853	CAATAAGTTGCCTGGCTGACTA	58.390	45.455	21.03	12.04	0.00	2.59
2472	2506	0.813184	CTGAATGTGTGTGCCCATCC	59.187	55.000	0.00	0.00	0.00	3.51
2480	2514	3.827008	ACTGTCACTCTGAATGTGTGT	57.173	42.857	0.00	0.00	40.09	3.72
2525	2559	5.063880	TGGTACAGAGCTTTCTTCCTTTTC	58.936	41.667	0.00	0.00	0.00	2.29
2598	2632	5.794687	TGAAATTATGAAATCAGTCGCGT	57.205	34.783	5.77	0.00	0.00	6.01
2639	2673	3.055458	TCCAAAATCTCATGTGCGGTAGA	60.055	43.478	0.00	0.00	0.00	2.59
2767	2801	2.279582	ATGTCCAAAGACGAGTAGCG	57.720	50.000	0.00	0.00	46.74	4.26
2777	2811	2.503331	TGTGGCAGTGTATGTCCAAAG	58.497	47.619	0.00	0.00	37.01	2.77

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.