Multiple sequence alignment - TraesCS2B01G063800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G063800 chr2B 100.000 3191 0 0 1 3191 30442834 30439644 0 5893
1 TraesCS2B01G063800 chr2D 94.978 2290 109 3 904 3191 18319642 18317357 0 3587
2 TraesCS2B01G063800 chr2D 96.072 891 35 0 1 891 18320611 18319721 0 1452
3 TraesCS2B01G063800 chr2A 95.680 1574 63 4 890 2463 19465905 19464337 0 2525
4 TraesCS2B01G063800 chr2A 94.731 892 43 2 1 891 19466865 19465977 0 1384
5 TraesCS2B01G063800 chr2A 89.839 620 61 2 2573 3191 19464321 19463703 0 795


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G063800 chr2B 30439644 30442834 3190 True 5893.0 5893 100.000000 1 3191 1 chr2B.!!$R1 3190
1 TraesCS2B01G063800 chr2D 18317357 18320611 3254 True 2519.5 3587 95.525000 1 3191 2 chr2D.!!$R1 3190
2 TraesCS2B01G063800 chr2A 19463703 19466865 3162 True 1568.0 2525 93.416667 1 3191 3 chr2A.!!$R1 3190

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 1019 0.833287 ACTAAGCTCCACCATCGCAT 59.167 50.0 0.0 0.0 0.0 4.73 F
1629 1705 0.042131 TCGGACAACCCCCAGTAGAT 59.958 55.0 0.0 0.0 0.0 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 2190 1.001520 TCTCCCGAAAGCGAAATGTCA 59.998 47.619 0.00 0.00 40.82 3.58 R
3118 3196 0.106149 CTGGGACCGTATAAGGCCAC 59.894 60.000 5.01 3.81 33.69 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 172 1.303309 CTCCGGCATTCACTCATTCC 58.697 55.000 0.00 0.00 0.00 3.01
201 202 4.425520 CCACCTTGTCGTCTTCTTATCTC 58.574 47.826 0.00 0.00 0.00 2.75
229 230 5.220381 GCTTAACCAAGGAAGCAAAGTAAC 58.780 41.667 7.45 0.00 45.99 2.50
248 249 1.134340 ACACCAAACCAGACGCAACTA 60.134 47.619 0.00 0.00 0.00 2.24
301 302 3.579151 ACCTTGTGTTCTTCCTCTCCTAC 59.421 47.826 0.00 0.00 0.00 3.18
330 332 3.074412 ACCAAGAAGCAAAGTCATACCG 58.926 45.455 0.00 0.00 0.00 4.02
458 460 8.477419 TTGGTTTCTTTCTCCATCTATTTTGT 57.523 30.769 0.00 0.00 0.00 2.83
477 479 7.938140 TTTTGTGGTTTCTCCTCCATATAAG 57.062 36.000 0.00 0.00 36.09 1.73
595 597 6.180472 GTTGATCTTCCTCCAAGTATTCCAA 58.820 40.000 0.00 0.00 33.27 3.53
706 708 9.658475 TGTTGTTAAAAGATAATTGAGACAACG 57.342 29.630 0.00 0.00 44.20 4.10
824 826 9.660180 ATTCTTTGGACTCTATTAGACTTTGAC 57.340 33.333 0.00 0.00 0.00 3.18
902 904 8.731275 TGTACAATTTTGATACACATCCTAGG 57.269 34.615 0.82 0.82 0.00 3.02
915 991 6.586344 ACACATCCTAGGATTGTTACATCAG 58.414 40.000 22.29 9.01 31.62 2.90
943 1019 0.833287 ACTAAGCTCCACCATCGCAT 59.167 50.000 0.00 0.00 0.00 4.73
944 1020 2.039418 ACTAAGCTCCACCATCGCATA 58.961 47.619 0.00 0.00 0.00 3.14
945 1021 2.434336 ACTAAGCTCCACCATCGCATAA 59.566 45.455 0.00 0.00 0.00 1.90
946 1022 1.959042 AAGCTCCACCATCGCATAAG 58.041 50.000 0.00 0.00 0.00 1.73
1010 1086 1.684983 CAAGGAATCCATGGCCATGAC 59.315 52.381 41.32 27.64 41.20 3.06
1011 1087 0.186873 AGGAATCCATGGCCATGACC 59.813 55.000 41.32 33.13 41.20 4.02
1048 1124 1.879380 CTGTTCTTGACGATTTGCCCA 59.121 47.619 0.00 0.00 0.00 5.36
1052 1128 1.073125 TCTTGACGATTTGCCCAAGGA 59.927 47.619 0.00 0.00 37.27 3.36
1134 1210 1.806542 GTTCGCAAGTCATGGTGTCAT 59.193 47.619 0.00 0.00 39.48 3.06
1165 1241 1.217882 CAAAGACTTCCTCGTTGCGT 58.782 50.000 0.00 0.00 32.54 5.24
1217 1293 8.131100 AGTCATCAAACAAATCAAGTACAACAG 58.869 33.333 0.00 0.00 0.00 3.16
1233 1309 7.816640 AGTACAACAGCAACCACTATATTTTG 58.183 34.615 0.00 0.00 0.00 2.44
1380 1456 1.953559 TTGTGCCTGTCTGTGAAGAC 58.046 50.000 0.00 0.00 39.15 3.01
1392 1468 3.648067 TCTGTGAAGACATGGGACTCTTT 59.352 43.478 0.00 0.00 0.00 2.52
1431 1507 2.513204 CGTCAGCATGCTCCCCTG 60.513 66.667 19.68 7.47 34.76 4.45
1448 1524 3.793144 GCGGCTGCTTCAAGGACG 61.793 66.667 11.21 0.00 38.39 4.79
1584 1660 6.094603 GCACAATTGATTTCTATGTCCTCACT 59.905 38.462 13.59 0.00 0.00 3.41
1593 1669 2.260639 ATGTCCTCACTGTGGGATCT 57.739 50.000 9.77 3.57 33.89 2.75
1629 1705 0.042131 TCGGACAACCCCCAGTAGAT 59.958 55.000 0.00 0.00 0.00 1.98
1718 1794 5.255397 TGGAAGTTGGGAACATACTCATT 57.745 39.130 0.00 0.00 42.32 2.57
1741 1817 0.385029 TGATGCCGGCAACATAATGC 59.615 50.000 36.33 15.04 45.67 3.56
1789 1865 3.399181 GGATGCTCGGTCCCACCA 61.399 66.667 0.00 0.00 38.47 4.17
1866 1942 6.466308 TGTAGTCAGAATTTCATTGTCACG 57.534 37.500 0.00 0.00 0.00 4.35
2033 2109 0.759346 ATCGAGCTATTGGGTGGGAC 59.241 55.000 0.00 0.00 0.00 4.46
2053 2129 4.482386 GACTGTTCTACACTGCGACATTA 58.518 43.478 0.00 0.00 0.00 1.90
2058 2134 4.465632 TCTACACTGCGACATTAATGGT 57.534 40.909 19.37 8.18 0.00 3.55
2082 2158 8.121086 GGTAAGTTTCTAGGAATTATTGAACGC 58.879 37.037 0.00 0.00 0.00 4.84
2192 2268 3.826729 GGCTTTGGGAAGAACATGTAAGT 59.173 43.478 0.00 0.00 34.71 2.24
2225 2301 5.993748 TCCGCATGGACATAGAATGTATA 57.006 39.130 0.00 0.00 45.03 1.47
2284 2360 2.766263 CTGCTATGGTAGGACTGGACAA 59.234 50.000 0.00 0.00 0.00 3.18
2346 2422 9.796120 GGCATATGCTAAATGTTACAAACTAAA 57.204 29.630 26.12 0.00 41.70 1.85
2465 2541 9.661187 GATGAACAAATAGAAATGCATGTAGAG 57.339 33.333 0.00 0.00 0.00 2.43
2466 2542 8.565896 TGAACAAATAGAAATGCATGTAGAGT 57.434 30.769 0.00 0.00 0.00 3.24
2470 2546 8.796475 ACAAATAGAAATGCATGTAGAGTTGTT 58.204 29.630 0.00 0.00 0.00 2.83
2477 2553 9.495754 GAAATGCATGTAGAGTTGTTATTTCTC 57.504 33.333 0.00 0.00 32.31 2.87
2494 2570 6.839820 ATTTCTCGACGTTTCAAAGTTAGT 57.160 33.333 0.00 0.00 0.00 2.24
2501 2577 6.364165 TCGACGTTTCAAAGTTAGTTAGGATG 59.636 38.462 0.00 0.00 0.00 3.51
2521 2597 4.875544 TGGCTCGAATGCAACTTATTAC 57.124 40.909 0.00 0.00 34.04 1.89
2543 2619 3.184178 CGAAACAACAATTTGGATGCACC 59.816 43.478 0.78 0.00 37.00 5.01
2598 2676 3.875727 CCAACTCCATATGTGCTTCTGAG 59.124 47.826 1.24 1.98 0.00 3.35
2600 2678 4.399004 ACTCCATATGTGCTTCTGAGTC 57.601 45.455 1.24 0.00 0.00 3.36
2642 2720 5.072055 TCATGGATGAACTCTTGCTTTTCA 58.928 37.500 0.00 0.00 33.08 2.69
2644 2722 5.850557 TGGATGAACTCTTGCTTTTCAAA 57.149 34.783 0.00 0.00 33.13 2.69
2733 2811 9.249053 TGTTCCTTTTACCATATTTTCATGCTA 57.751 29.630 0.00 0.00 0.00 3.49
2769 2847 8.325477 ACCTCCAGAAATAGAGCTAAAATAGT 57.675 34.615 0.00 0.00 0.00 2.12
2813 2891 0.394762 GCATGGCTGAACATCAGGGA 60.395 55.000 9.25 0.00 44.43 4.20
2875 2953 9.807386 CTACCAATTTATTGCGCTATACTAAAC 57.193 33.333 11.14 0.00 36.48 2.01
2877 2955 6.795114 CCAATTTATTGCGCTATACTAAACGG 59.205 38.462 11.14 6.33 36.48 4.44
2906 2984 7.824289 ACTTGGAACGAGAATAATTGAATGAGA 59.176 33.333 0.00 0.00 0.00 3.27
2907 2985 8.560355 TTGGAACGAGAATAATTGAATGAGAA 57.440 30.769 0.00 0.00 0.00 2.87
2934 3012 0.382515 GAGATACTCGTCCGCTTGCT 59.617 55.000 0.00 0.00 0.00 3.91
2965 3043 3.141488 CCTGCTACCGCGTCCTCT 61.141 66.667 4.92 0.00 39.65 3.69
2966 3044 1.822613 CCTGCTACCGCGTCCTCTA 60.823 63.158 4.92 0.00 39.65 2.43
2967 3045 1.173444 CCTGCTACCGCGTCCTCTAT 61.173 60.000 4.92 0.00 39.65 1.98
2979 3057 5.124138 CCGCGTCCTCTATAACTCATTCTAT 59.876 44.000 4.92 0.00 0.00 1.98
3000 3078 3.659850 CGTCGTCTGGATGCCATAA 57.340 52.632 0.00 0.00 30.82 1.90
3037 3115 0.319555 TCACAACTTCCTTCTCGCCG 60.320 55.000 0.00 0.00 0.00 6.46
3053 3131 1.601703 CCGACCACCATCACCATCA 59.398 57.895 0.00 0.00 0.00 3.07
3054 3132 0.035534 CCGACCACCATCACCATCAA 60.036 55.000 0.00 0.00 0.00 2.57
3057 3135 2.420547 CGACCACCATCACCATCAATCT 60.421 50.000 0.00 0.00 0.00 2.40
3082 3160 4.321452 CCCTCCACATCATCAAACACTTTG 60.321 45.833 0.00 0.00 41.96 2.77
3115 3193 2.420547 GCTGCATCAGATGACCCTTGTA 60.421 50.000 15.12 0.00 32.44 2.41
3117 3195 4.458397 CTGCATCAGATGACCCTTGTATT 58.542 43.478 15.12 0.00 32.44 1.89
3118 3196 4.201657 TGCATCAGATGACCCTTGTATTG 58.798 43.478 15.12 0.00 0.00 1.90
3120 3198 4.036027 GCATCAGATGACCCTTGTATTGTG 59.964 45.833 15.12 0.00 0.00 3.33
3126 3204 2.645297 TGACCCTTGTATTGTGGCCTTA 59.355 45.455 3.32 0.00 0.00 2.69
3153 3231 1.377725 CAGGAGCAATCGCAACCCT 60.378 57.895 0.00 0.00 42.27 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 5.586243 GCATGGGTGTGGTGATATATATGAC 59.414 44.000 0.00 1.47 0.00 3.06
171 172 2.150424 CGACAAGGTGGCGTTACTG 58.850 57.895 0.00 0.00 45.41 2.74
229 230 1.263217 GTAGTTGCGTCTGGTTTGGTG 59.737 52.381 0.00 0.00 0.00 4.17
357 359 4.509600 CACCTTCCTCGATGAAGAAATAGC 59.490 45.833 26.21 0.00 43.60 2.97
458 460 5.724370 TGTGTCTTATATGGAGGAGAAACCA 59.276 40.000 0.00 0.00 42.04 3.67
477 479 3.344515 GGGAGGTGGATTTTAGTGTGTC 58.655 50.000 0.00 0.00 0.00 3.67
595 597 7.676683 AATCGGGCATATAGACATATTACCT 57.323 36.000 0.00 0.00 0.00 3.08
650 652 8.449251 AAAAACACTAATGCATTTCCACAATT 57.551 26.923 18.75 3.75 0.00 2.32
693 695 9.491675 TTTAGGAAATGTACGTTGTCTCAATTA 57.508 29.630 0.00 0.00 0.00 1.40
696 698 7.972832 ATTTAGGAAATGTACGTTGTCTCAA 57.027 32.000 0.00 1.28 0.00 3.02
815 817 5.598005 TGGAACATGAATTTGGTCAAAGTCT 59.402 36.000 19.76 4.81 43.42 3.24
891 893 6.384015 TCTGATGTAACAATCCTAGGATGTGT 59.616 38.462 25.20 23.94 34.70 3.72
892 894 6.820335 TCTGATGTAACAATCCTAGGATGTG 58.180 40.000 25.20 23.37 34.70 3.21
893 895 7.437713 TTCTGATGTAACAATCCTAGGATGT 57.562 36.000 25.20 20.09 34.70 3.06
894 896 7.989741 ACTTTCTGATGTAACAATCCTAGGATG 59.010 37.037 25.20 19.49 34.70 3.51
895 897 8.095452 ACTTTCTGATGTAACAATCCTAGGAT 57.905 34.615 19.18 19.18 36.23 3.24
896 898 7.496346 ACTTTCTGATGTAACAATCCTAGGA 57.504 36.000 15.46 15.46 0.00 2.94
897 899 8.567285 AAACTTTCTGATGTAACAATCCTAGG 57.433 34.615 0.82 0.82 0.00 3.02
900 902 9.574516 AGTTAAACTTTCTGATGTAACAATCCT 57.425 29.630 0.00 0.00 0.00 3.24
915 991 6.402226 CGATGGTGGAGCTTAGTTAAACTTTC 60.402 42.308 0.00 0.00 0.00 2.62
927 1003 1.210478 ACTTATGCGATGGTGGAGCTT 59.790 47.619 0.00 0.00 0.00 3.74
1032 1108 1.073125 TCCTTGGGCAAATCGTCAAGA 59.927 47.619 0.00 0.00 38.96 3.02
1048 1124 5.301835 ACCTCATCGATGATGATTTCCTT 57.698 39.130 29.91 9.18 46.16 3.36
1052 1128 5.541868 AGGAGTACCTCATCGATGATGATTT 59.458 40.000 29.91 16.57 46.16 2.17
1116 1192 3.933879 ATGACACCATGACTTGCGA 57.066 47.368 0.00 0.00 0.00 5.10
1134 1210 1.150536 GTCTTTGGTGGAGGTGGCA 59.849 57.895 0.00 0.00 0.00 4.92
1165 1241 2.281900 GGGTTGGCGCTTGTGGTA 60.282 61.111 7.64 0.00 0.00 3.25
1217 1293 4.736126 AAGGCCAAAATATAGTGGTTGC 57.264 40.909 5.01 0.00 37.23 4.17
1233 1309 3.958798 TGGTACTAGAGTCACATAAGGCC 59.041 47.826 0.00 0.00 0.00 5.19
1275 1351 1.457346 GGAAGATGGGCAGACAACAG 58.543 55.000 0.00 0.00 0.00 3.16
1380 1456 3.256383 TGCAAACATCAAAGAGTCCCATG 59.744 43.478 0.00 0.00 0.00 3.66
1392 1468 4.154015 CGAGTAGTTGGATTGCAAACATCA 59.846 41.667 1.71 0.00 0.00 3.07
1431 1507 3.793144 CGTCCTTGAAGCAGCCGC 61.793 66.667 0.00 0.00 38.99 6.53
1442 1518 2.128771 ATTTGGTAGCATGCGTCCTT 57.871 45.000 25.91 8.39 0.00 3.36
1443 1519 2.434336 TCTATTTGGTAGCATGCGTCCT 59.566 45.455 25.91 14.22 0.00 3.85
1448 1524 3.403038 ACGGATCTATTTGGTAGCATGC 58.597 45.455 10.51 10.51 0.00 4.06
1512 1588 2.152016 CATATCGAGTAGAGCACCCGA 58.848 52.381 0.00 0.00 0.00 5.14
1584 1660 2.711009 CCTGGGCTTATTAGATCCCACA 59.289 50.000 0.00 0.00 43.40 4.17
1593 1669 0.400213 CGATGGGCCTGGGCTTATTA 59.600 55.000 20.47 2.50 41.60 0.98
1718 1794 3.483808 TTATGTTGCCGGCATCATAGA 57.516 42.857 38.80 30.84 38.80 1.98
1741 1817 2.061773 CTCGGCTGTAGTGTCAAACAG 58.938 52.381 10.81 10.81 44.79 3.16
1789 1865 8.576442 CAACAATGACTTTGAAAGGTAGGTATT 58.424 33.333 10.02 0.00 38.76 1.89
2033 2109 5.220472 CCATTAATGTCGCAGTGTAGAACAG 60.220 44.000 14.25 0.00 0.00 3.16
2058 2134 7.760794 TCGCGTTCAATAATTCCTAGAAACTTA 59.239 33.333 5.77 0.00 0.00 2.24
2099 2175 5.798434 CGAAATGTCATAATATGCATGCTGG 59.202 40.000 20.33 0.63 30.98 4.85
2114 2190 1.001520 TCTCCCGAAAGCGAAATGTCA 59.998 47.619 0.00 0.00 40.82 3.58
2143 2219 4.654915 TGCATCTCAAAGAATGGAAGTGA 58.345 39.130 0.00 0.00 0.00 3.41
2225 2301 8.650143 AGATACCCAAATACAACAATTCAAGT 57.350 30.769 0.00 0.00 0.00 3.16
2386 2462 1.705186 ACAACACAGTAGGCCAGGATT 59.295 47.619 5.01 0.00 0.00 3.01
2465 2541 6.903479 ACTTTGAAACGTCGAGAAATAACAAC 59.097 34.615 0.00 0.00 0.00 3.32
2466 2542 7.007313 ACTTTGAAACGTCGAGAAATAACAA 57.993 32.000 0.00 0.00 0.00 2.83
2470 2546 7.935338 ACTAACTTTGAAACGTCGAGAAATA 57.065 32.000 0.00 0.00 0.00 1.40
2473 2549 6.418819 CCTAACTAACTTTGAAACGTCGAGAA 59.581 38.462 0.00 0.00 0.00 2.87
2477 2553 6.400727 CCATCCTAACTAACTTTGAAACGTCG 60.401 42.308 0.00 0.00 0.00 5.12
2494 2570 2.092968 AGTTGCATTCGAGCCATCCTAA 60.093 45.455 0.00 0.00 0.00 2.69
2501 2577 3.554324 TCGTAATAAGTTGCATTCGAGCC 59.446 43.478 0.00 0.00 0.00 4.70
2521 2597 3.184178 GGTGCATCCAAATTGTTGTTTCG 59.816 43.478 0.00 0.00 35.97 3.46
2570 2648 4.666512 AGCACATATGGAGTTGGAAAGTT 58.333 39.130 7.80 0.00 0.00 2.66
2571 2649 4.307032 AGCACATATGGAGTTGGAAAGT 57.693 40.909 7.80 0.00 0.00 2.66
2598 2676 6.018589 TGATGATACATGCTAGCACTAGAC 57.981 41.667 22.07 12.31 35.21 2.59
2600 2678 5.811100 CCATGATGATACATGCTAGCACTAG 59.189 44.000 22.07 15.43 44.11 2.57
2706 2784 8.761689 AGCATGAAAATATGGTAAAAGGAACAT 58.238 29.630 0.00 0.00 37.04 2.71
2790 2868 1.067060 CTGATGTTCAGCCATGCCATG 59.933 52.381 0.00 0.00 37.72 3.66
2791 2869 1.399714 CTGATGTTCAGCCATGCCAT 58.600 50.000 0.00 0.00 37.72 4.40
2875 2953 2.295253 ATTCTCGTTCCAAGTAGCCG 57.705 50.000 0.00 0.00 0.00 5.52
2877 2955 6.903883 TCAATTATTCTCGTTCCAAGTAGC 57.096 37.500 0.00 0.00 0.00 3.58
2906 2984 2.959707 GGACGAGTATCTCCCAGATGTT 59.040 50.000 0.00 0.00 35.37 2.71
2907 2985 2.588620 GGACGAGTATCTCCCAGATGT 58.411 52.381 0.00 0.00 35.37 3.06
2965 3043 6.856426 CAGACGACGCAATAGAATGAGTTATA 59.144 38.462 0.00 0.00 33.29 0.98
2966 3044 5.687730 CAGACGACGCAATAGAATGAGTTAT 59.312 40.000 0.00 0.00 33.29 1.89
2967 3045 5.034797 CAGACGACGCAATAGAATGAGTTA 58.965 41.667 0.00 0.00 33.29 2.24
2979 3057 2.434185 GGCATCCAGACGACGCAA 60.434 61.111 0.00 0.00 0.00 4.85
2999 3077 2.446994 TGGAGGTCACACGGGGTT 60.447 61.111 0.00 0.00 0.00 4.11
3000 3078 3.239253 GTGGAGGTCACACGGGGT 61.239 66.667 0.00 0.00 45.39 4.95
3037 3115 3.209410 GAGATTGATGGTGATGGTGGTC 58.791 50.000 0.00 0.00 0.00 4.02
3053 3131 2.780414 TGATGATGTGGAGGGGAGATT 58.220 47.619 0.00 0.00 0.00 2.40
3054 3132 2.502068 TGATGATGTGGAGGGGAGAT 57.498 50.000 0.00 0.00 0.00 2.75
3057 3135 1.991813 TGTTTGATGATGTGGAGGGGA 59.008 47.619 0.00 0.00 0.00 4.81
3082 3160 1.071857 TGATGCAGCTCCATCATCCTC 59.928 52.381 16.55 0.00 44.79 3.71
3083 3161 1.137697 TGATGCAGCTCCATCATCCT 58.862 50.000 16.55 0.00 44.79 3.24
3087 3165 1.766496 TCATCTGATGCAGCTCCATCA 59.234 47.619 19.17 19.17 46.78 3.07
3115 3193 1.142262 GGGACCGTATAAGGCCACAAT 59.858 52.381 5.01 0.00 33.69 2.71
3117 3195 0.618107 TGGGACCGTATAAGGCCACA 60.618 55.000 5.01 6.24 33.69 4.17
3118 3196 0.106149 CTGGGACCGTATAAGGCCAC 59.894 60.000 5.01 3.81 33.69 5.01
3120 3198 0.761702 TCCTGGGACCGTATAAGGCC 60.762 60.000 4.42 0.00 33.69 5.19
3126 3204 0.759346 GATTGCTCCTGGGACCGTAT 59.241 55.000 0.00 0.00 0.00 3.06
3153 3231 6.611613 ACTGTCAGGATGTAGAAATCAGAA 57.388 37.500 4.53 0.00 37.40 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.