Multiple sequence alignment - TraesCS2B01G062800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G062800 chr2B 100.000 2240 0 0 1 2240 29994412 29992173 0.000000e+00 4137
1 TraesCS2B01G062800 chr2B 89.633 1746 145 18 239 1971 28906550 28908272 0.000000e+00 2189
2 TraesCS2B01G062800 chr2B 92.141 1247 70 19 84 1314 29043700 29044934 0.000000e+00 1735
3 TraesCS2B01G062800 chr2B 86.381 514 40 18 1476 1966 29045210 29045716 3.270000e-148 534
4 TraesCS2B01G062800 chr2B 85.068 221 16 13 1267 1484 29044977 29045183 2.250000e-50 209
5 TraesCS2B01G062800 chr2B 85.340 191 26 2 2048 2237 28920445 28920634 1.750000e-46 196
6 TraesCS2B01G062800 chr2B 82.222 135 9 4 1931 2050 28908261 28908395 3.940000e-18 102
7 TraesCS2B01G062800 chr2D 90.744 1761 136 15 221 1971 17309917 17311660 0.000000e+00 2324
8 TraesCS2B01G062800 chr2D 91.643 706 51 4 1271 1971 17167897 17168599 0.000000e+00 970
9 TraesCS2B01G062800 chr2D 84.778 992 112 22 127 1113 17164936 17165893 0.000000e+00 959
10 TraesCS2B01G062800 chr2D 83.333 330 34 5 1931 2240 17311649 17311977 3.640000e-73 285
11 TraesCS2B01G062800 chr2D 82.727 330 36 9 1931 2240 17168588 17168916 7.880000e-70 274
12 TraesCS2B01G062800 chr2D 94.393 107 4 1 1167 1273 17165886 17165990 1.780000e-36 163
13 TraesCS2B01G062800 chr2A 87.890 1346 116 28 926 2240 18634289 18635618 0.000000e+00 1539
14 TraesCS2B01G062800 chr2A 84.873 747 103 10 100 840 18583646 18584388 0.000000e+00 745
15 TraesCS2B01G062800 chr2A 92.172 511 33 4 807 1316 18584402 18584906 0.000000e+00 715
16 TraesCS2B01G062800 chr2A 82.055 730 84 26 1555 2240 18585323 18586049 1.490000e-161 579
17 TraesCS2B01G062800 chr2A 93.966 116 6 1 1370 1484 18585124 18585239 8.220000e-40 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G062800 chr2B 29992173 29994412 2239 True 4137.00 4137 100.000000 1 2240 1 chr2B.!!$R1 2239
1 TraesCS2B01G062800 chr2B 28906550 28908395 1845 False 1145.50 2189 85.927500 239 2050 2 chr2B.!!$F2 1811
2 TraesCS2B01G062800 chr2B 29043700 29045716 2016 False 826.00 1735 87.863333 84 1966 3 chr2B.!!$F3 1882
3 TraesCS2B01G062800 chr2D 17309917 17311977 2060 False 1304.50 2324 87.038500 221 2240 2 chr2D.!!$F2 2019
4 TraesCS2B01G062800 chr2D 17164936 17168916 3980 False 591.50 970 88.385250 127 2240 4 chr2D.!!$F1 2113
5 TraesCS2B01G062800 chr2A 18634289 18635618 1329 False 1539.00 1539 87.890000 926 2240 1 chr2A.!!$F1 1314
6 TraesCS2B01G062800 chr2A 18583646 18586049 2403 False 553.25 745 88.266500 100 2240 4 chr2A.!!$F2 2140

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.107831 GTTGGTATGGGCGAGGCATA 59.892 55.0 0.0 0.0 0.0 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1330 3413 0.238289 GAACCCACGACATGCAACTG 59.762 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.270850 TGTTGGTATGGGCGAGGC 59.729 61.111 0.00 0.00 0.00 4.70
18 19 2.270850 GTTGGTATGGGCGAGGCA 59.729 61.111 0.00 0.00 0.00 4.75
19 20 1.152963 GTTGGTATGGGCGAGGCAT 60.153 57.895 0.00 0.00 0.00 4.40
20 21 0.107831 GTTGGTATGGGCGAGGCATA 59.892 55.000 0.00 0.00 0.00 3.14
21 22 0.396435 TTGGTATGGGCGAGGCATAG 59.604 55.000 0.00 0.00 0.00 2.23
22 23 1.376037 GGTATGGGCGAGGCATAGC 60.376 63.158 0.00 0.00 0.00 2.97
32 33 2.193248 GGCATAGCCCTGGTCACC 59.807 66.667 0.00 0.00 44.06 4.02
33 34 2.193248 GCATAGCCCTGGTCACCC 59.807 66.667 0.00 0.00 0.00 4.61
34 35 2.679342 GCATAGCCCTGGTCACCCA 61.679 63.158 0.00 0.00 38.87 4.51
35 36 1.998530 CATAGCCCTGGTCACCCAA 59.001 57.895 0.00 0.00 41.27 4.12
36 37 0.552848 CATAGCCCTGGTCACCCAAT 59.447 55.000 0.00 0.00 41.27 3.16
37 38 1.774254 CATAGCCCTGGTCACCCAATA 59.226 52.381 0.00 0.00 41.27 1.90
38 39 1.974028 TAGCCCTGGTCACCCAATAA 58.026 50.000 0.00 0.00 41.27 1.40
39 40 1.080638 AGCCCTGGTCACCCAATAAA 58.919 50.000 0.00 0.00 41.27 1.40
40 41 1.005924 AGCCCTGGTCACCCAATAAAG 59.994 52.381 0.00 0.00 41.27 1.85
41 42 1.005450 GCCCTGGTCACCCAATAAAGA 59.995 52.381 0.00 0.00 41.27 2.52
42 43 2.945890 GCCCTGGTCACCCAATAAAGAG 60.946 54.545 0.00 0.00 41.27 2.85
43 44 2.308866 CCCTGGTCACCCAATAAAGAGT 59.691 50.000 0.00 0.00 41.27 3.24
44 45 3.245264 CCCTGGTCACCCAATAAAGAGTT 60.245 47.826 0.00 0.00 41.27 3.01
45 46 4.018779 CCCTGGTCACCCAATAAAGAGTTA 60.019 45.833 0.00 0.00 41.27 2.24
46 47 4.941873 CCTGGTCACCCAATAAAGAGTTAC 59.058 45.833 0.00 0.00 41.27 2.50
47 48 5.514136 CCTGGTCACCCAATAAAGAGTTACA 60.514 44.000 0.00 0.00 41.27 2.41
48 49 5.556915 TGGTCACCCAATAAAGAGTTACAG 58.443 41.667 0.00 0.00 37.98 2.74
49 50 4.941873 GGTCACCCAATAAAGAGTTACAGG 59.058 45.833 0.00 0.00 0.00 4.00
50 51 4.941873 GTCACCCAATAAAGAGTTACAGGG 59.058 45.833 0.00 0.00 40.29 4.45
51 52 4.600111 TCACCCAATAAAGAGTTACAGGGT 59.400 41.667 0.00 0.00 44.75 4.34
52 53 4.918588 ACCCAATAAAGAGTTACAGGGTG 58.081 43.478 0.00 0.00 43.37 4.61
53 54 4.263771 ACCCAATAAAGAGTTACAGGGTGG 60.264 45.833 0.00 0.00 43.37 4.61
54 55 3.694566 CCAATAAAGAGTTACAGGGTGGC 59.305 47.826 0.00 0.00 0.00 5.01
55 56 3.646736 ATAAAGAGTTACAGGGTGGCC 57.353 47.619 0.00 0.00 0.00 5.36
56 57 0.404426 AAAGAGTTACAGGGTGGCCC 59.596 55.000 0.00 0.00 45.90 5.80
66 67 3.681909 GGGTGGCCCATAAAGACAA 57.318 52.632 0.00 0.00 44.65 3.18
67 68 1.182667 GGGTGGCCCATAAAGACAAC 58.817 55.000 0.00 0.00 44.65 3.32
68 69 1.549037 GGGTGGCCCATAAAGACAACA 60.549 52.381 0.00 0.00 44.65 3.33
69 70 2.243810 GGTGGCCCATAAAGACAACAA 58.756 47.619 0.00 0.00 0.00 2.83
70 71 2.231235 GGTGGCCCATAAAGACAACAAG 59.769 50.000 0.00 0.00 0.00 3.16
71 72 2.890945 GTGGCCCATAAAGACAACAAGT 59.109 45.455 0.00 0.00 0.00 3.16
72 73 3.320826 GTGGCCCATAAAGACAACAAGTT 59.679 43.478 0.00 0.00 0.00 2.66
73 74 3.572255 TGGCCCATAAAGACAACAAGTTC 59.428 43.478 0.00 0.00 0.00 3.01
74 75 3.056821 GGCCCATAAAGACAACAAGTTCC 60.057 47.826 0.00 0.00 0.00 3.62
75 76 3.826729 GCCCATAAAGACAACAAGTTCCT 59.173 43.478 0.00 0.00 0.00 3.36
76 77 5.007682 GCCCATAAAGACAACAAGTTCCTA 58.992 41.667 0.00 0.00 0.00 2.94
77 78 5.106277 GCCCATAAAGACAACAAGTTCCTAC 60.106 44.000 0.00 0.00 0.00 3.18
78 79 6.001460 CCCATAAAGACAACAAGTTCCTACA 58.999 40.000 0.00 0.00 0.00 2.74
79 80 6.488683 CCCATAAAGACAACAAGTTCCTACAA 59.511 38.462 0.00 0.00 0.00 2.41
80 81 7.013846 CCCATAAAGACAACAAGTTCCTACAAA 59.986 37.037 0.00 0.00 0.00 2.83
81 82 8.410141 CCATAAAGACAACAAGTTCCTACAAAA 58.590 33.333 0.00 0.00 0.00 2.44
82 83 9.233232 CATAAAGACAACAAGTTCCTACAAAAC 57.767 33.333 0.00 0.00 0.00 2.43
162 163 9.656040 CTTGAACATTTTGAAATCCATGGATTA 57.344 29.630 34.78 21.90 43.26 1.75
270 295 5.873732 AGACATTTTCTGATTTTAGCTCGC 58.126 37.500 0.00 0.00 31.12 5.03
293 318 0.804544 GATCGGTTGTTCATCCGCGA 60.805 55.000 8.23 0.00 45.44 5.87
385 410 8.020253 TGGATCCAGGTTAGGAGGTATATTTTA 58.980 37.037 11.44 0.00 41.90 1.52
445 470 3.195661 GAGGCTAAACCAGGTTATCACG 58.804 50.000 4.87 0.00 43.14 4.35
593 624 8.654230 ACATGTCATATGTCATACTGAAAGAC 57.346 34.615 13.93 0.00 37.43 3.01
686 717 7.752239 CCTTGCATGTTTTTACAGTTATCTCTG 59.248 37.037 0.00 0.00 40.80 3.35
711 742 6.017605 GTCTGGAGCATTATTCCACAATACTG 60.018 42.308 0.00 0.00 39.74 2.74
724 755 5.069648 TCCACAATACTGAAATGTTTGGCAA 59.930 36.000 0.00 0.00 0.00 4.52
779 810 0.178924 AGCCCACCAGAAATTGCCTT 60.179 50.000 0.00 0.00 0.00 4.35
795 826 1.689892 GCCTTACCTAGGTGGAGAGCT 60.690 57.143 25.33 0.00 46.61 4.09
858 948 7.554118 TGGAAATCAACATAGAGAAACTCCATC 59.446 37.037 0.00 0.00 0.00 3.51
921 1012 2.451490 ACTCATCACCAGATCTCGTGT 58.549 47.619 18.38 5.30 30.20 4.49
964 1058 1.616159 TAGGAAAACCAGCAAGCCAC 58.384 50.000 0.00 0.00 0.00 5.01
1029 1123 2.439507 TCTTCCTCTGTTTGTCCTTGCT 59.560 45.455 0.00 0.00 0.00 3.91
1035 1129 4.074970 CTCTGTTTGTCCTTGCTATGGTT 58.925 43.478 0.00 0.00 0.00 3.67
1068 1162 2.355837 GCCGTGTCTTCTCGCACA 60.356 61.111 0.00 0.00 35.51 4.57
1089 1183 1.469940 GCACCGAGAGACCATGTACTG 60.470 57.143 0.00 0.00 0.00 2.74
1113 1207 1.208052 GGAGTAGTGAAGATGGCAGCA 59.792 52.381 5.19 0.00 0.00 4.41
1205 1299 0.893727 GGAAACATGCCCGGAAGTGT 60.894 55.000 0.73 0.59 0.00 3.55
1269 1363 5.359009 GCCTGATATATGCATGCCTTTGTAT 59.641 40.000 16.68 8.15 0.00 2.29
1281 3284 4.002982 TGCCTTTGTATGTAGCAGACTTG 58.997 43.478 0.00 0.00 0.00 3.16
1317 3320 7.859875 GGTACGTATACATACTCTTTTGAGTCC 59.140 40.741 8.84 0.00 43.43 3.85
1352 3435 0.888736 TTGCATGTCGTGGGTTCCTG 60.889 55.000 0.00 0.00 0.00 3.86
1410 3579 7.068348 AGCCGGATCACGTCTATATATTTACAT 59.932 37.037 5.05 0.00 42.24 2.29
1492 3697 4.663334 TGAGCTCTTGAGTACTACCAAGA 58.337 43.478 20.13 20.13 44.38 3.02
1513 3718 7.254590 CCAAGAAGATGAATCAGTCCGAAATAC 60.255 40.741 0.00 0.00 0.00 1.89
1522 3729 7.705325 TGAATCAGTCCGAAATACTAGCTTTAC 59.295 37.037 0.00 0.00 0.00 2.01
1619 3855 7.547227 ACCATTTACTTGAAGTTGATATTGCC 58.453 34.615 1.97 0.00 0.00 4.52
1733 3969 9.736023 AGTGTTGATGTGAGAAAATAAAAGAAC 57.264 29.630 0.00 0.00 0.00 3.01
1777 4013 4.858850 AGACATGAAGGGAAACATGCATA 58.141 39.130 0.00 0.00 45.03 3.14
1802 4038 2.819608 AGACGGCATGCAATTGTTAACT 59.180 40.909 21.36 3.16 0.00 2.24
1813 4049 4.865365 GCAATTGTTAACTAGAGTCTCGCT 59.135 41.667 7.40 0.00 0.00 4.93
1920 4160 1.274712 ACAGCCCTCTCTCCTCAAAG 58.725 55.000 0.00 0.00 0.00 2.77
2004 4290 8.684386 TGATACAATTTCACTGAAACCACTTA 57.316 30.769 6.35 0.00 34.23 2.24
2006 4292 9.959749 GATACAATTTCACTGAAACCACTTAAA 57.040 29.630 6.35 0.00 34.23 1.52
2090 4376 8.086851 ACAATTTCATTGAAAATGCCTTACAC 57.913 30.769 21.55 0.00 42.83 2.90
2119 4406 4.083802 GCTTCATAAAGTATCGACATGGGC 60.084 45.833 0.00 0.00 34.79 5.36
2123 4410 6.119536 TCATAAAGTATCGACATGGGCTTTT 58.880 36.000 0.00 0.00 0.00 2.27
2145 4438 3.873910 AGTCATTAGTGTACATGTGCCC 58.126 45.455 9.11 0.00 0.00 5.36
2176 4469 6.240894 GGGATGCTGGAATAATGAGATGTTA 58.759 40.000 0.00 0.00 0.00 2.41
2196 4489 9.573133 GATGTTATCCTTTGGTTCAGTATTTTG 57.427 33.333 0.00 0.00 0.00 2.44
2219 4512 6.973843 TGGCAAAATGCTAGCTATTATTCTG 58.026 36.000 17.23 5.43 44.28 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.107831 TATGCCTCGCCCATACCAAC 59.892 55.000 0.00 0.00 0.00 3.77
4 5 1.376037 GCTATGCCTCGCCCATACC 60.376 63.158 0.00 0.00 0.00 2.73
5 6 1.376037 GGCTATGCCTCGCCCATAC 60.376 63.158 0.73 0.00 46.69 2.39
6 7 3.068881 GGCTATGCCTCGCCCATA 58.931 61.111 0.73 0.00 46.69 2.74
27 28 4.941873 CCCTGTAACTCTTTATTGGGTGAC 59.058 45.833 0.00 0.00 32.28 3.67
28 29 4.600111 ACCCTGTAACTCTTTATTGGGTGA 59.400 41.667 0.00 0.00 40.95 4.02
29 30 4.700213 CACCCTGTAACTCTTTATTGGGTG 59.300 45.833 12.55 12.55 46.04 4.61
30 31 4.263771 CCACCCTGTAACTCTTTATTGGGT 60.264 45.833 0.00 0.00 42.13 4.51
31 32 4.270008 CCACCCTGTAACTCTTTATTGGG 58.730 47.826 0.00 0.00 38.00 4.12
32 33 3.694566 GCCACCCTGTAACTCTTTATTGG 59.305 47.826 0.00 0.00 0.00 3.16
33 34 3.694566 GGCCACCCTGTAACTCTTTATTG 59.305 47.826 0.00 0.00 0.00 1.90
34 35 3.308904 GGGCCACCCTGTAACTCTTTATT 60.309 47.826 4.39 0.00 41.34 1.40
35 36 2.241430 GGGCCACCCTGTAACTCTTTAT 59.759 50.000 4.39 0.00 41.34 1.40
36 37 1.631898 GGGCCACCCTGTAACTCTTTA 59.368 52.381 4.39 0.00 41.34 1.85
37 38 0.404426 GGGCCACCCTGTAACTCTTT 59.596 55.000 4.39 0.00 41.34 2.52
38 39 0.770557 TGGGCCACCCTGTAACTCTT 60.771 55.000 0.00 0.00 45.70 2.85
39 40 0.550147 ATGGGCCACCCTGTAACTCT 60.550 55.000 9.28 0.00 45.70 3.24
40 41 1.209621 TATGGGCCACCCTGTAACTC 58.790 55.000 9.28 0.00 45.70 3.01
41 42 1.676248 TTATGGGCCACCCTGTAACT 58.324 50.000 9.28 0.00 45.70 2.24
42 43 2.025699 TCTTTATGGGCCACCCTGTAAC 60.026 50.000 9.28 0.00 45.70 2.50
43 44 2.025699 GTCTTTATGGGCCACCCTGTAA 60.026 50.000 9.28 0.00 45.70 2.41
44 45 1.562475 GTCTTTATGGGCCACCCTGTA 59.438 52.381 9.28 0.00 45.70 2.74
45 46 0.331616 GTCTTTATGGGCCACCCTGT 59.668 55.000 9.28 0.00 45.70 4.00
46 47 0.331278 TGTCTTTATGGGCCACCCTG 59.669 55.000 9.28 0.00 45.70 4.45
47 48 1.080638 TTGTCTTTATGGGCCACCCT 58.919 50.000 9.28 0.00 45.70 4.34
48 49 1.182667 GTTGTCTTTATGGGCCACCC 58.817 55.000 9.28 0.00 45.71 4.61
49 50 1.917872 TGTTGTCTTTATGGGCCACC 58.082 50.000 9.28 0.00 37.24 4.61
50 51 2.890945 ACTTGTTGTCTTTATGGGCCAC 59.109 45.455 9.28 0.00 0.00 5.01
51 52 3.237268 ACTTGTTGTCTTTATGGGCCA 57.763 42.857 9.61 9.61 0.00 5.36
52 53 3.056821 GGAACTTGTTGTCTTTATGGGCC 60.057 47.826 0.00 0.00 0.00 5.80
53 54 3.826729 AGGAACTTGTTGTCTTTATGGGC 59.173 43.478 0.00 0.00 27.25 5.36
54 55 6.001460 TGTAGGAACTTGTTGTCTTTATGGG 58.999 40.000 0.00 0.00 41.75 4.00
55 56 7.504924 TTGTAGGAACTTGTTGTCTTTATGG 57.495 36.000 0.00 0.00 41.75 2.74
56 57 9.233232 GTTTTGTAGGAACTTGTTGTCTTTATG 57.767 33.333 0.00 0.00 41.75 1.90
57 58 9.185680 AGTTTTGTAGGAACTTGTTGTCTTTAT 57.814 29.630 0.00 0.00 41.75 1.40
58 59 8.570068 AGTTTTGTAGGAACTTGTTGTCTTTA 57.430 30.769 0.00 0.00 41.75 1.85
59 60 7.462571 AGTTTTGTAGGAACTTGTTGTCTTT 57.537 32.000 0.00 0.00 41.75 2.52
60 61 7.462571 AAGTTTTGTAGGAACTTGTTGTCTT 57.537 32.000 1.80 0.00 43.58 3.01
61 62 7.462571 AAAGTTTTGTAGGAACTTGTTGTCT 57.537 32.000 3.31 0.00 44.24 3.41
62 63 8.528917 AAAAAGTTTTGTAGGAACTTGTTGTC 57.471 30.769 0.61 0.00 44.24 3.18
270 295 2.806288 GGATGAACAACCGATCAACG 57.194 50.000 0.00 0.00 42.18 4.10
299 324 4.634703 TGTCGTGCCGCCATGGTT 62.635 61.111 14.67 0.00 41.21 3.67
445 470 7.201652 GGTGGTAAGATCTTTAAAGCATGAGTC 60.202 40.741 14.36 0.00 0.00 3.36
677 708 6.648725 GGAATAATGCTCCAGACAGAGATAAC 59.351 42.308 0.00 0.00 35.82 1.89
686 717 6.017605 CAGTATTGTGGAATAATGCTCCAGAC 60.018 42.308 0.00 0.00 43.68 3.51
711 742 8.135529 AGTAACTTTCTACTTGCCAAACATTTC 58.864 33.333 0.00 0.00 0.00 2.17
720 751 4.691216 CACCTCAGTAACTTTCTACTTGCC 59.309 45.833 0.00 0.00 29.36 4.52
724 755 5.145564 TGTCCACCTCAGTAACTTTCTACT 58.854 41.667 0.00 0.00 32.13 2.57
779 810 1.639108 TGTGAGCTCTCCACCTAGGTA 59.361 52.381 15.80 0.00 39.02 3.08
795 826 6.094048 GCAGTGCCTCTTTAATTATCTTGTGA 59.906 38.462 2.85 0.00 0.00 3.58
829 919 8.186821 GGAGTTTCTCTATGTTGATTTCCATTG 58.813 37.037 0.00 0.00 0.00 2.82
858 948 9.995003 ATAGATTAATAGAGCTTTCTGAACCAG 57.005 33.333 0.00 0.00 0.00 4.00
903 994 2.685388 GAGACACGAGATCTGGTGATGA 59.315 50.000 35.59 0.00 41.03 2.92
921 1012 1.890489 TGATTTTGGGTCGAGACGAGA 59.110 47.619 0.00 0.00 36.23 4.04
1029 1123 4.095185 GCACAAGCGTTAACCATAACCATA 59.905 41.667 0.00 0.00 38.55 2.74
1035 1129 1.080298 CGGCACAAGCGTTAACCATA 58.920 50.000 0.00 0.00 43.41 2.74
1068 1162 0.818296 GTACATGGTCTCTCGGTGCT 59.182 55.000 0.00 0.00 0.00 4.40
1089 1183 2.435805 TGCCATCTTCACTACTCCATCC 59.564 50.000 0.00 0.00 0.00 3.51
1131 1225 4.389992 GGTATCGCATGATGATTGTCGATT 59.610 41.667 9.48 0.00 36.01 3.34
1205 1299 2.168313 TCTTCGCTAGCAATGTCATGGA 59.832 45.455 16.45 0.00 0.00 3.41
1242 1336 1.404391 GGCATGCATATATCAGGCTGC 59.596 52.381 21.36 12.08 40.62 5.25
1269 1363 0.325933 AGCATGCCAAGTCTGCTACA 59.674 50.000 15.66 0.00 44.08 2.74
1281 3284 2.559668 TGTATACGTACCCTAGCATGCC 59.440 50.000 15.66 0.00 0.00 4.40
1317 3320 6.306596 CGACATGCAACTGCTACTATACATAG 59.693 42.308 2.95 0.00 42.66 2.23
1330 3413 0.238289 GAACCCACGACATGCAACTG 59.762 55.000 0.00 0.00 0.00 3.16
1366 3450 4.401202 CCGGCTCACCCTTAATTTACATTT 59.599 41.667 0.00 0.00 0.00 2.32
1367 3451 3.951680 CCGGCTCACCCTTAATTTACATT 59.048 43.478 0.00 0.00 0.00 2.71
1450 3619 9.190858 GAGCTCATACTGTAAACTATCAATGAG 57.809 37.037 9.40 0.00 41.16 2.90
1492 3697 6.926272 GCTAGTATTTCGGACTGATTCATCTT 59.074 38.462 0.00 0.00 0.00 2.40
1619 3855 9.678941 CTTCAACATCAATCTTATGAATCCATG 57.321 33.333 0.00 0.00 34.31 3.66
1686 3922 8.006298 ACACTTGATTGTTTCATGTTTTCCTA 57.994 30.769 0.00 0.00 39.89 2.94
1739 3975 9.645059 CCTTCATGTCTACATATAGTTATGGTG 57.355 37.037 0.00 0.00 39.69 4.17
1782 4018 3.216147 AGTTAACAATTGCATGCCGTC 57.784 42.857 16.68 0.00 0.00 4.79
1802 4038 2.351835 GCAGACAACAAGCGAGACTCTA 60.352 50.000 0.03 0.00 0.00 2.43
1813 4049 1.913778 ATCATGCCAGCAGACAACAA 58.086 45.000 0.00 0.00 0.00 2.83
1878 4118 7.698628 TGTTTTTCATCAACGTGAAATACTCA 58.301 30.769 17.40 7.67 44.80 3.41
1881 4121 6.129194 GGCTGTTTTTCATCAACGTGAAATAC 60.129 38.462 12.74 12.74 44.80 1.89
1890 4130 3.823304 AGAGAGGGCTGTTTTTCATCAAC 59.177 43.478 0.00 0.00 0.00 3.18
1905 4145 1.631071 GCCCCTTTGAGGAGAGAGGG 61.631 65.000 0.19 0.19 46.89 4.30
1920 4160 2.985957 ACATAAACAATGCATGCCCC 57.014 45.000 16.68 0.00 39.39 5.80
2082 4368 7.762382 ACTTTATGAAGCTATTTGTGTAAGGC 58.238 34.615 0.00 0.00 36.29 4.35
2090 4376 9.803130 CATGTCGATACTTTATGAAGCTATTTG 57.197 33.333 0.00 0.00 36.29 2.32
2119 4406 7.414098 GGGCACATGTACACTAATGACTAAAAG 60.414 40.741 0.00 0.00 0.00 2.27
2123 4410 4.141801 GGGGCACATGTACACTAATGACTA 60.142 45.833 0.00 0.00 0.00 2.59
2151 4444 3.795688 TCTCATTATTCCAGCATCCCC 57.204 47.619 0.00 0.00 0.00 4.81
2157 4450 7.992754 AAGGATAACATCTCATTATTCCAGC 57.007 36.000 0.00 0.00 0.00 4.85
2176 4469 4.837860 TGCCAAAATACTGAACCAAAGGAT 59.162 37.500 0.00 0.00 0.00 3.24
2196 4489 6.015940 ACCAGAATAATAGCTAGCATTTTGCC 60.016 38.462 18.83 1.00 46.52 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.