Multiple sequence alignment - TraesCS2B01G062600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G062600 chr2B 100.000 3134 0 0 1 3134 29871571 29868438 0.000000e+00 5788.0
1 TraesCS2B01G062600 chr2B 84.232 983 99 32 135 1074 29055630 29056599 0.000000e+00 905.0
2 TraesCS2B01G062600 chr2B 89.150 682 57 8 2468 3134 29000630 29001309 0.000000e+00 833.0
3 TraesCS2B01G062600 chr2B 88.563 682 61 6 2468 3134 29058501 29059180 0.000000e+00 811.0
4 TraesCS2B01G062600 chr2B 86.942 605 72 7 468 1069 29979637 29979037 0.000000e+00 673.0
5 TraesCS2B01G062600 chr2B 87.047 579 59 9 488 1064 28998157 28998721 9.480000e-180 640.0
6 TraesCS2B01G062600 chr2B 85.375 547 57 10 1950 2479 28998725 28999265 2.130000e-151 545.0
7 TraesCS2B01G062600 chr2B 84.335 549 62 9 1948 2479 29056592 29057133 1.670000e-142 516.0
8 TraesCS2B01G062600 chr2B 93.056 288 18 2 1663 1950 160212932 160213217 1.340000e-113 420.0
9 TraesCS2B01G062600 chr2B 92.414 290 10 4 1666 1946 704956 704670 1.350000e-108 403.0
10 TraesCS2B01G062600 chr2B 92.941 255 17 1 1704 1958 117922739 117922486 1.370000e-98 370.0
11 TraesCS2B01G062600 chr2B 84.706 255 33 6 1709 1960 529864403 529864152 1.870000e-62 250.0
12 TraesCS2B01G062600 chr2B 90.503 179 17 0 1400 1578 691072 690894 1.450000e-58 237.0
13 TraesCS2B01G062600 chr2B 91.379 58 3 2 1608 1665 790420783 790420838 9.320000e-11 78.7
14 TraesCS2B01G062600 chr2B 89.655 58 4 2 1608 1665 790426393 790426448 4.340000e-09 73.1
15 TraesCS2B01G062600 chr2D 93.942 1073 54 5 1 1069 17238055 17239120 0.000000e+00 1611.0
16 TraesCS2B01G062600 chr2D 87.767 1218 111 16 1948 3134 17239117 17240327 0.000000e+00 1389.0
17 TraesCS2B01G062600 chr2D 86.740 822 80 10 1948 2743 17184384 17185202 0.000000e+00 887.0
18 TraesCS2B01G062600 chr2D 85.714 721 76 10 1948 2644 17337037 17337754 0.000000e+00 736.0
19 TraesCS2B01G062600 chr2D 85.714 721 76 10 1948 2644 17347193 17347910 0.000000e+00 736.0
20 TraesCS2B01G062600 chr2D 85.714 721 76 10 1948 2644 17356411 17357128 0.000000e+00 736.0
21 TraesCS2B01G062600 chr2D 93.820 356 20 2 2781 3134 17338043 17338398 4.600000e-148 534.0
22 TraesCS2B01G062600 chr2D 93.820 356 20 2 2781 3134 17348394 17348749 4.600000e-148 534.0
23 TraesCS2B01G062600 chr2D 93.820 356 20 2 2781 3134 17358060 17358415 4.600000e-148 534.0
24 TraesCS2B01G062600 chr2D 86.375 389 36 12 690 1069 17184007 17184387 2.910000e-110 409.0
25 TraesCS2B01G062600 chr2D 88.750 320 28 6 750 1069 17336729 17337040 4.900000e-103 385.0
26 TraesCS2B01G062600 chr2D 88.818 313 27 6 750 1062 17346382 17346686 8.200000e-101 377.0
27 TraesCS2B01G062600 chr2D 88.818 313 27 6 750 1062 17355689 17355993 8.200000e-101 377.0
28 TraesCS2B01G062600 chr2D 81.268 347 48 12 133 473 17327430 17327765 6.660000e-67 265.0
29 TraesCS2B01G062600 chr2D 80.980 347 50 11 133 473 17183097 17183433 8.620000e-66 261.0
30 TraesCS2B01G062600 chr2A 86.796 1083 100 26 1948 3021 18677009 18678057 0.000000e+00 1168.0
31 TraesCS2B01G062600 chr2A 84.594 1058 101 25 1948 2984 18615499 18616515 0.000000e+00 994.0
32 TraesCS2B01G062600 chr2A 85.481 978 92 30 135 1074 18614541 18615506 0.000000e+00 974.0
33 TraesCS2B01G062600 chr2A 95.357 603 26 2 468 1069 18676411 18677012 0.000000e+00 957.0
34 TraesCS2B01G062600 chr2A 84.768 604 75 9 468 1069 18647569 18648157 9.680000e-165 590.0
35 TraesCS2B01G062600 chr2A 92.010 413 26 3 2729 3134 18650577 18650989 9.750000e-160 573.0
36 TraesCS2B01G062600 chr2A 88.889 477 34 9 1 473 18675925 18676386 1.260000e-158 569.0
37 TraesCS2B01G062600 chr2A 84.153 549 62 8 1948 2479 18648154 18648694 2.790000e-140 508.0
38 TraesCS2B01G062600 chr2A 91.765 85 7 0 46 130 18647079 18647163 5.490000e-23 119.0
39 TraesCS2B01G062600 chr5B 95.109 552 24 2 1068 1617 584257668 584257118 0.000000e+00 867.0
40 TraesCS2B01G062600 chr5B 94.203 552 29 2 1068 1617 584263242 584262692 0.000000e+00 839.0
41 TraesCS2B01G062600 chr5B 94.182 550 29 2 1070 1617 584272722 584272174 0.000000e+00 835.0
42 TraesCS2B01G062600 chr5B 93.388 484 29 1 1068 1548 648670961 648670478 0.000000e+00 713.0
43 TraesCS2B01G062600 chr3D 81.626 898 133 25 1068 1946 37449096 37449980 0.000000e+00 715.0
44 TraesCS2B01G062600 chr1B 92.500 480 30 1 1068 1547 142095543 142095070 0.000000e+00 682.0
45 TraesCS2B01G062600 chr1B 93.527 448 29 0 1068 1515 685091221 685091668 0.000000e+00 667.0
46 TraesCS2B01G062600 chr1B 93.031 287 8 8 1666 1946 101239763 101239483 2.910000e-110 409.0
47 TraesCS2B01G062600 chr1B 92.414 290 10 9 1663 1946 652476992 652477275 1.350000e-108 403.0
48 TraesCS2B01G062600 chr3B 91.561 474 39 1 1068 1541 10751904 10752376 0.000000e+00 652.0
49 TraesCS2B01G062600 chr3B 97.727 44 1 0 1622 1665 10746945 10746988 3.350000e-10 76.8
50 TraesCS2B01G062600 chr7A 88.910 523 53 4 1068 1586 669192955 669193476 9.480000e-180 640.0
51 TraesCS2B01G062600 chr7A 88.528 523 54 5 1068 1586 669148997 669149517 2.050000e-176 628.0
52 TraesCS2B01G062600 chr7A 87.189 523 62 4 1068 1586 669130655 669131176 9.680000e-165 590.0
53 TraesCS2B01G062600 chr7A 87.747 506 60 2 1068 1572 669174443 669174947 9.680000e-165 590.0
54 TraesCS2B01G062600 chrUn 85.321 545 77 3 1069 1612 216752972 216753514 7.590000e-156 560.0
55 TraesCS2B01G062600 chrUn 93.820 356 20 2 2781 3134 384030397 384030752 4.600000e-148 534.0
56 TraesCS2B01G062600 chrUn 92.388 289 14 6 1666 1948 76531542 76531256 3.760000e-109 405.0
57 TraesCS2B01G062600 chr7B 94.464 289 9 3 1663 1946 499615467 499615753 3.710000e-119 438.0
58 TraesCS2B01G062600 chr4B 94.737 285 9 6 1666 1947 112933287 112933006 3.710000e-119 438.0
59 TraesCS2B01G062600 chr5D 93.972 282 9 8 1666 1946 554486752 554486478 1.340000e-113 420.0
60 TraesCS2B01G062600 chr6B 92.440 291 12 4 1666 1946 717773441 717773151 1.050000e-109 407.0
61 TraesCS2B01G062600 chr6B 91.379 58 3 2 1608 1665 20021210 20021155 9.320000e-11 78.7
62 TraesCS2B01G062600 chr6B 91.379 58 3 2 1608 1665 20026809 20026754 9.320000e-11 78.7
63 TraesCS2B01G062600 chr6B 100.000 41 0 0 1625 1665 206842447 206842407 3.350000e-10 76.8
64 TraesCS2B01G062600 chr6B 89.655 58 4 2 1608 1665 206836831 206836776 4.340000e-09 73.1
65 TraesCS2B01G062600 chr6B 89.655 58 4 2 1608 1665 695154801 695154746 4.340000e-09 73.1
66 TraesCS2B01G062600 chr5A 84.641 306 31 13 1666 1958 103002544 103002242 1.100000e-74 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G062600 chr2B 29868438 29871571 3133 True 5788.000000 5788 100.000000 1 3134 1 chr2B.!!$R3 3133
1 TraesCS2B01G062600 chr2B 29055630 29059180 3550 False 744.000000 905 85.710000 135 3134 3 chr2B.!!$F5 2999
2 TraesCS2B01G062600 chr2B 29979037 29979637 600 True 673.000000 673 86.942000 468 1069 1 chr2B.!!$R4 601
3 TraesCS2B01G062600 chr2B 28998157 29001309 3152 False 672.666667 833 87.190667 488 3134 3 chr2B.!!$F4 2646
4 TraesCS2B01G062600 chr2D 17238055 17240327 2272 False 1500.000000 1611 90.854500 1 3134 2 chr2D.!!$F3 3133
5 TraesCS2B01G062600 chr2D 17336729 17338398 1669 False 551.666667 736 89.428000 750 3134 3 chr2D.!!$F4 2384
6 TraesCS2B01G062600 chr2D 17346382 17348749 2367 False 549.000000 736 89.450667 750 3134 3 chr2D.!!$F5 2384
7 TraesCS2B01G062600 chr2D 17355689 17358415 2726 False 549.000000 736 89.450667 750 3134 3 chr2D.!!$F6 2384
8 TraesCS2B01G062600 chr2D 17183097 17185202 2105 False 519.000000 887 84.698333 133 2743 3 chr2D.!!$F2 2610
9 TraesCS2B01G062600 chr2A 18614541 18616515 1974 False 984.000000 994 85.037500 135 2984 2 chr2A.!!$F1 2849
10 TraesCS2B01G062600 chr2A 18675925 18678057 2132 False 898.000000 1168 90.347333 1 3021 3 chr2A.!!$F3 3020
11 TraesCS2B01G062600 chr2A 18647079 18650989 3910 False 447.500000 590 88.174000 46 3134 4 chr2A.!!$F2 3088
12 TraesCS2B01G062600 chr5B 584257118 584257668 550 True 867.000000 867 95.109000 1068 1617 1 chr5B.!!$R1 549
13 TraesCS2B01G062600 chr5B 584262692 584263242 550 True 839.000000 839 94.203000 1068 1617 1 chr5B.!!$R2 549
14 TraesCS2B01G062600 chr5B 584272174 584272722 548 True 835.000000 835 94.182000 1070 1617 1 chr5B.!!$R3 547
15 TraesCS2B01G062600 chr3D 37449096 37449980 884 False 715.000000 715 81.626000 1068 1946 1 chr3D.!!$F1 878
16 TraesCS2B01G062600 chr7A 669192955 669193476 521 False 640.000000 640 88.910000 1068 1586 1 chr7A.!!$F4 518
17 TraesCS2B01G062600 chr7A 669148997 669149517 520 False 628.000000 628 88.528000 1068 1586 1 chr7A.!!$F2 518
18 TraesCS2B01G062600 chr7A 669130655 669131176 521 False 590.000000 590 87.189000 1068 1586 1 chr7A.!!$F1 518
19 TraesCS2B01G062600 chr7A 669174443 669174947 504 False 590.000000 590 87.747000 1068 1572 1 chr7A.!!$F3 504
20 TraesCS2B01G062600 chrUn 216752972 216753514 542 False 560.000000 560 85.321000 1069 1612 1 chrUn.!!$F1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
726 1143 0.252193 CCCACCACCATTTCCCACAT 60.252 55.0 0.0 0.0 0.0 3.21 F
1639 2583 0.535102 AACAGGAGGTGAAGCAACGG 60.535 55.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1653 2597 0.033781 TTTTGCCATGCTGCCTGTTC 59.966 50.0 4.26 0.0 0.00 3.18 R
2451 3454 0.543749 CTCTTCCCGAGGGATGCTTT 59.456 55.0 12.27 0.0 44.74 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.673337 TTTCATCATATTACGCTCCTTGC 57.327 39.130 0.00 0.00 38.57 4.01
43 44 4.335400 TCATCATATTACGCTCCTTGCA 57.665 40.909 0.00 0.00 43.06 4.08
44 45 4.702831 TCATCATATTACGCTCCTTGCAA 58.297 39.130 0.00 0.00 43.06 4.08
79 80 8.597227 TGACGGTATTGTTAATCGTTCTATTTG 58.403 33.333 0.00 0.00 34.06 2.32
82 83 7.225145 CGGTATTGTTAATCGTTCTATTTGGGA 59.775 37.037 0.00 0.00 0.00 4.37
145 189 6.063640 ACCAAAATTTGCTTGCTCATTTTC 57.936 33.333 0.00 0.00 28.44 2.29
181 225 3.489398 GGTCAGCCAGTCTCAGTATTACG 60.489 52.174 0.00 0.00 34.09 3.18
199 243 8.372459 AGTATTACGCTCCATGGATTTGTATTA 58.628 33.333 16.63 14.41 0.00 0.98
302 346 7.755373 GCAAATGGTAATCTTGGTTCTTAGTTC 59.245 37.037 0.00 0.00 0.00 3.01
309 353 5.063180 TCTTGGTTCTTAGTTCGCGAATA 57.937 39.130 26.23 14.83 0.00 1.75
328 372 7.095774 CGCGAATAACTAGCTAAAATGGTGTAT 60.096 37.037 0.00 0.00 0.00 2.29
336 380 9.113838 ACTAGCTAAAATGGTGTATTGAATCTG 57.886 33.333 0.00 0.00 0.00 2.90
338 382 8.353423 AGCTAAAATGGTGTATTGAATCTGTT 57.647 30.769 0.00 0.00 0.00 3.16
339 383 9.461312 AGCTAAAATGGTGTATTGAATCTGTTA 57.539 29.630 0.00 0.00 0.00 2.41
380 428 1.317613 TTGCCGCACTCTTTCATGTT 58.682 45.000 0.00 0.00 0.00 2.71
598 684 7.618019 ATTTTACCACTGGAGATGATAGCTA 57.382 36.000 0.71 0.00 0.00 3.32
647 734 7.547227 AGTAAATCTTTGGATTGTGCCATAAC 58.453 34.615 0.00 0.00 40.86 1.89
649 736 6.610075 AATCTTTGGATTGTGCCATAACTT 57.390 33.333 0.00 0.00 40.30 2.66
726 1143 0.252193 CCCACCACCATTTCCCACAT 60.252 55.000 0.00 0.00 0.00 3.21
738 1163 7.069826 CACCATTTCCCACATAATATCCAGTTT 59.930 37.037 0.00 0.00 0.00 2.66
805 1235 4.219288 ACAAAGAGGCAAACATCCATTCTC 59.781 41.667 0.00 0.00 0.00 2.87
812 1242 2.281070 CATCCATTCTCGCCCCCG 60.281 66.667 0.00 0.00 0.00 5.73
857 1287 8.549338 ACACTAAGTTTATTCTCCACTAAAGC 57.451 34.615 0.00 0.00 0.00 3.51
884 1314 6.323739 AGTTGTACAAAACCATCCAGTTCAAT 59.676 34.615 10.51 0.00 0.00 2.57
946 1376 3.002791 TGAAGAGCTTTGTATTCCTGCG 58.997 45.455 0.00 0.00 0.00 5.18
1051 1487 4.678287 GGCTGATTTTCATCAACATATGCG 59.322 41.667 1.58 0.00 39.04 4.73
1176 2115 3.744846 GCCATGCAATCTGACAGAGAGAT 60.745 47.826 11.52 0.00 32.80 2.75
1208 2147 5.292765 ACGTCTGCATATATGAACTTGAGG 58.707 41.667 17.10 8.00 0.00 3.86
1265 2204 7.534085 TGCTTATATGAAACAGAACCTAACG 57.466 36.000 0.00 0.00 0.00 3.18
1300 2239 4.810191 AACTAGAGCCAAGAACTGTAGG 57.190 45.455 0.00 0.00 35.79 3.18
1369 2308 4.329545 GCGCTGGACTTGGGGTCA 62.330 66.667 0.00 0.00 46.16 4.02
1377 2316 0.765510 GACTTGGGGTCAGTGTCCTT 59.234 55.000 6.37 0.00 43.94 3.36
1581 2523 2.763448 GGATGAGGAAGACAGCAGTAGT 59.237 50.000 0.00 0.00 0.00 2.73
1617 2561 2.776913 GGCGAGAGGAAGAGGACCG 61.777 68.421 0.00 0.00 0.00 4.79
1619 2563 2.802106 GAGAGGAAGAGGACCGCG 59.198 66.667 0.00 0.00 32.70 6.46
1620 2564 1.749638 GAGAGGAAGAGGACCGCGA 60.750 63.158 8.23 0.00 32.70 5.87
1621 2565 1.304217 AGAGGAAGAGGACCGCGAA 60.304 57.895 8.23 0.00 32.70 4.70
1622 2566 1.153804 GAGGAAGAGGACCGCGAAC 60.154 63.158 8.23 0.00 0.00 3.95
1623 2567 1.874345 GAGGAAGAGGACCGCGAACA 61.874 60.000 8.23 0.00 0.00 3.18
1624 2568 1.446272 GGAAGAGGACCGCGAACAG 60.446 63.158 8.23 0.00 0.00 3.16
1626 2570 1.874345 GAAGAGGACCGCGAACAGGA 61.874 60.000 8.23 0.00 0.00 3.86
1627 2571 1.878656 AAGAGGACCGCGAACAGGAG 61.879 60.000 8.23 0.00 0.00 3.69
1628 2572 3.358076 GAGGACCGCGAACAGGAGG 62.358 68.421 8.23 0.00 0.00 4.30
1629 2573 3.692406 GGACCGCGAACAGGAGGT 61.692 66.667 8.23 0.00 43.18 3.85
1630 2574 2.432628 GACCGCGAACAGGAGGTG 60.433 66.667 8.23 0.00 40.40 4.00
1631 2575 2.915659 ACCGCGAACAGGAGGTGA 60.916 61.111 8.23 0.00 38.76 4.02
1632 2576 2.342279 CCGCGAACAGGAGGTGAA 59.658 61.111 8.23 0.00 0.00 3.18
1634 2578 2.383527 CGCGAACAGGAGGTGAAGC 61.384 63.158 0.00 0.00 0.00 3.86
1635 2579 1.301716 GCGAACAGGAGGTGAAGCA 60.302 57.895 0.00 0.00 0.00 3.91
1637 2581 0.868406 CGAACAGGAGGTGAAGCAAC 59.132 55.000 0.00 0.00 0.00 4.17
1639 2583 0.535102 AACAGGAGGTGAAGCAACGG 60.535 55.000 0.00 0.00 0.00 4.44
1640 2584 1.371183 CAGGAGGTGAAGCAACGGA 59.629 57.895 0.00 0.00 0.00 4.69
1641 2585 0.671781 CAGGAGGTGAAGCAACGGAG 60.672 60.000 0.00 0.00 0.00 4.63
1643 2587 1.376037 GAGGTGAAGCAACGGAGGG 60.376 63.158 0.00 0.00 0.00 4.30
1644 2588 1.827399 GAGGTGAAGCAACGGAGGGA 61.827 60.000 0.00 0.00 0.00 4.20
1645 2589 1.376037 GGTGAAGCAACGGAGGGAG 60.376 63.158 0.00 0.00 0.00 4.30
1646 2590 1.376037 GTGAAGCAACGGAGGGAGG 60.376 63.158 0.00 0.00 0.00 4.30
1648 2592 4.394712 AAGCAACGGAGGGAGGCG 62.395 66.667 0.00 0.00 0.00 5.52
1650 2594 4.388499 GCAACGGAGGGAGGCGAA 62.388 66.667 0.00 0.00 0.00 4.70
1651 2595 2.125512 CAACGGAGGGAGGCGAAG 60.126 66.667 0.00 0.00 0.00 3.79
1653 2597 2.943978 AACGGAGGGAGGCGAAGTG 61.944 63.158 0.00 0.00 0.00 3.16
1655 2599 2.646175 CGGAGGGAGGCGAAGTGAA 61.646 63.158 0.00 0.00 0.00 3.18
1656 2600 1.079057 GGAGGGAGGCGAAGTGAAC 60.079 63.158 0.00 0.00 0.00 3.18
1657 2601 1.671742 GAGGGAGGCGAAGTGAACA 59.328 57.895 0.00 0.00 0.00 3.18
1659 2603 1.376037 GGGAGGCGAAGTGAACAGG 60.376 63.158 0.00 0.00 0.00 4.00
1660 2604 2.035442 GGAGGCGAAGTGAACAGGC 61.035 63.158 0.00 0.00 0.00 4.85
1661 2605 1.301716 GAGGCGAAGTGAACAGGCA 60.302 57.895 0.00 0.00 0.00 4.75
1662 2606 1.294659 GAGGCGAAGTGAACAGGCAG 61.295 60.000 0.00 0.00 0.00 4.85
1663 2607 2.558313 GCGAAGTGAACAGGCAGC 59.442 61.111 0.00 0.00 0.00 5.25
1664 2608 2.253758 GCGAAGTGAACAGGCAGCA 61.254 57.895 0.00 0.00 0.00 4.41
1665 2609 1.580845 GCGAAGTGAACAGGCAGCAT 61.581 55.000 0.00 0.00 0.00 3.79
1667 2611 0.524862 GAAGTGAACAGGCAGCATGG 59.475 55.000 12.54 0.00 35.86 3.66
1680 2624 3.587923 GCAGCATGGCAAAAATTAGACA 58.412 40.909 0.00 0.00 35.86 3.41
1683 2627 4.501559 CAGCATGGCAAAAATTAGACATCG 59.498 41.667 0.00 0.00 0.00 3.84
1688 2632 3.354397 GCAAAAATTAGACATCGGCTCG 58.646 45.455 0.00 0.00 0.00 5.03
1700 2644 4.699522 GGCTCGTTCCCGCAACCT 62.700 66.667 0.00 0.00 0.00 3.50
1742 2700 3.749064 GAGGAGGAGCGCGTGTGA 61.749 66.667 8.43 0.00 0.00 3.58
1771 2729 5.181009 CCTCTTGTTCTCATGCTCATACAA 58.819 41.667 0.00 0.00 0.00 2.41
1774 2732 6.935167 TCTTGTTCTCATGCTCATACAAGTA 58.065 36.000 16.50 6.96 41.76 2.24
1784 2742 6.313519 TGCTCATACAAGTAGGGAAAGAAT 57.686 37.500 0.00 0.00 0.00 2.40
1831 2789 3.689649 CCACTAAACTAGCAATGTGGGAC 59.310 47.826 14.21 0.00 40.65 4.46
1837 2795 4.910458 ACTAGCAATGTGGGACTAAACT 57.090 40.909 0.00 0.00 0.00 2.66
1861 2819 2.196595 AGTAGTATCCCTTGCCTTGCA 58.803 47.619 0.00 0.00 36.47 4.08
1863 2821 0.698238 AGTATCCCTTGCCTTGCACA 59.302 50.000 0.00 0.00 38.71 4.57
1867 2825 0.968405 TCCCTTGCCTTGCACAAATC 59.032 50.000 0.00 0.00 38.71 2.17
1872 2830 0.607762 TGCCTTGCACAAATCGGCTA 60.608 50.000 11.88 0.00 41.25 3.93
1873 2831 0.525761 GCCTTGCACAAATCGGCTAA 59.474 50.000 5.20 0.00 37.76 3.09
1919 2877 8.011844 AGGAATTTCTGAAATAGTTATTGGGC 57.988 34.615 15.45 0.00 0.00 5.36
1920 2878 7.841222 AGGAATTTCTGAAATAGTTATTGGGCT 59.159 33.333 15.45 0.00 0.00 5.19
1934 2892 3.596362 GGGCTGCCCAAAATAGACT 57.404 52.632 32.46 0.00 44.65 3.24
1946 2904 6.183360 GCCCAAAATAGACTAAATTCCAGCAT 60.183 38.462 0.00 0.00 0.00 3.79
1984 2945 2.467838 CATCTCACGATACTGTGCCAG 58.532 52.381 0.00 1.16 39.73 4.85
1990 2951 2.099756 CACGATACTGTGCCAGAGATGA 59.900 50.000 8.91 0.00 35.18 2.92
1997 2958 2.490509 CTGTGCCAGAGATGAAAATGCA 59.509 45.455 0.00 0.00 32.44 3.96
2004 2965 5.181009 CCAGAGATGAAAATGCACAGTCTA 58.819 41.667 0.00 0.00 0.00 2.59
2061 3022 0.902984 ACGATCACCAGTGCCCACTA 60.903 55.000 0.00 0.00 40.20 2.74
2125 3086 2.574006 AGCAGCTCAAGATGTTGGAA 57.426 45.000 2.33 0.00 34.09 3.53
2167 3129 9.065722 TGAGGGATTATGAGATGGAATGAATAT 57.934 33.333 0.00 0.00 0.00 1.28
2183 3145 7.287696 GGAATGAATATCCCCAGTTTATGTTGT 59.712 37.037 0.00 0.00 0.00 3.32
2185 3147 7.403312 TGAATATCCCCAGTTTATGTTGTTG 57.597 36.000 0.00 0.00 0.00 3.33
2201 3163 3.706802 TGTTGTTACTTCCACGTACGA 57.293 42.857 24.41 0.00 0.00 3.43
2207 3169 2.701073 ACTTCCACGTACGAAGTCAG 57.299 50.000 24.41 12.69 45.28 3.51
2212 3174 1.001048 CCACGTACGAAGTCAGTTGGA 60.001 52.381 24.41 0.00 43.93 3.53
2221 3183 5.411781 ACGAAGTCAGTTGGAATGAGATAC 58.588 41.667 0.00 0.00 29.74 2.24
2241 3206 7.327975 AGATACGTTCCATGTCAATGTTTCTA 58.672 34.615 13.65 0.00 32.49 2.10
2250 3215 5.456548 TGTCAATGTTTCTACGTAGTCCA 57.543 39.130 21.53 15.95 43.93 4.02
2253 3218 6.071560 TGTCAATGTTTCTACGTAGTCCATCT 60.072 38.462 21.53 10.05 43.93 2.90
2300 3277 4.487714 TCATGTTCTCAGGAATGTACCC 57.512 45.455 0.00 0.00 31.29 3.69
2307 3284 4.483950 TCTCAGGAATGTACCCATCCTAG 58.516 47.826 9.98 8.70 31.48 3.02
2324 3301 6.887002 CCATCCTAGATGCTACTGATGTACTA 59.113 42.308 0.00 0.00 0.00 1.82
2496 4881 5.944007 TGCTTAGGTTTATTCTTGTTCCCTC 59.056 40.000 0.00 0.00 0.00 4.30
2500 4885 5.561679 AGGTTTATTCTTGTTCCCTCTCAC 58.438 41.667 0.00 0.00 0.00 3.51
2536 4921 5.128827 CACCTTTGGAACTCTACTATGGCTA 59.871 44.000 0.00 0.00 0.00 3.93
2545 4930 7.666388 GGAACTCTACTATGGCTATCAAGTCTA 59.334 40.741 0.00 0.00 0.00 2.59
2551 4936 6.740110 ACTATGGCTATCAAGTCTAAACTCG 58.260 40.000 0.00 0.00 33.48 4.18
2554 4939 3.552294 GGCTATCAAGTCTAAACTCGTGC 59.448 47.826 0.00 0.00 33.48 5.34
2601 5000 7.946207 TGCTTATTTCAAGGTGAACACAAATA 58.054 30.769 7.25 5.89 35.89 1.40
2611 5010 6.981722 AGGTGAACACAAATATTCCTTCAAC 58.018 36.000 7.25 0.00 0.00 3.18
2636 5035 2.625695 AAAATGCAGCAAGCCTTGTT 57.374 40.000 6.28 0.00 44.83 2.83
2666 5894 0.737219 CTTAGGCTTCATGCTGTGCC 59.263 55.000 0.00 9.14 45.21 5.01
2669 5897 1.975407 GGCTTCATGCTGTGCCTGT 60.975 57.895 9.68 0.00 41.92 4.00
2681 5909 5.445069 TGCTGTGCCTGTAAATATACCAAT 58.555 37.500 0.00 0.00 0.00 3.16
2779 6303 2.413112 CCAGCAGTACAATCACAAGACG 59.587 50.000 0.00 0.00 0.00 4.18
2780 6304 2.413112 CAGCAGTACAATCACAAGACGG 59.587 50.000 0.00 0.00 0.00 4.79
3021 6557 5.643777 GCAGAATCCATAATACATTACGCCT 59.356 40.000 0.00 0.00 0.00 5.52
3027 6563 6.530120 TCCATAATACATTACGCCTCATGTT 58.470 36.000 0.00 0.00 35.24 2.71
3029 6565 7.500892 TCCATAATACATTACGCCTCATGTTTT 59.499 33.333 0.00 0.00 35.24 2.43
3047 6583 8.642432 TCATGTTTTAACATTTATTGGACCACA 58.358 29.630 5.40 0.00 46.95 4.17
3060 6596 2.228582 TGGACCACAATTGAGAAATGCG 59.771 45.455 13.59 0.00 0.00 4.73
3070 6606 7.164826 CACAATTGAGAAATGCGAGCTAATAAC 59.835 37.037 13.59 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.627863 TACCGTCAACATGCAATTGC 57.372 45.000 23.69 23.69 42.50 3.56
42 43 4.484236 ACAATACCGTCAACATGCAATTG 58.516 39.130 0.00 0.00 0.00 2.32
43 44 4.782019 ACAATACCGTCAACATGCAATT 57.218 36.364 0.00 0.00 0.00 2.32
44 45 4.782019 AACAATACCGTCAACATGCAAT 57.218 36.364 0.00 0.00 0.00 3.56
162 206 2.099921 AGCGTAATACTGAGACTGGCTG 59.900 50.000 0.00 0.00 0.00 4.85
168 212 3.318275 TCCATGGAGCGTAATACTGAGAC 59.682 47.826 11.44 0.00 0.00 3.36
181 225 8.632679 TGAAAATCTAATACAAATCCATGGAGC 58.367 33.333 21.33 0.00 0.00 4.70
302 346 5.006358 ACACCATTTTAGCTAGTTATTCGCG 59.994 40.000 0.00 0.00 0.00 5.87
309 353 9.686683 AGATTCAATACACCATTTTAGCTAGTT 57.313 29.630 0.00 0.00 0.00 2.24
406 455 3.506067 ACACAAAGTAGTAATTGGCAGGC 59.494 43.478 0.00 0.00 0.00 4.85
598 684 3.136443 TGGAAGATCCATATGGCGTCTTT 59.864 43.478 28.26 18.69 42.67 2.52
805 1235 0.963962 TAAGCTACTTATCGGGGGCG 59.036 55.000 0.00 0.00 0.00 6.13
849 1279 5.202640 GGTTTTGTACAACTCGCTTTAGTG 58.797 41.667 8.07 0.00 0.00 2.74
857 1287 3.813166 ACTGGATGGTTTTGTACAACTCG 59.187 43.478 8.07 0.00 0.00 4.18
884 1314 9.624697 GAACTTACATAATTGTGCTCAAATTGA 57.375 29.630 5.15 0.00 36.53 2.57
987 1417 4.503007 CCGGTCTTCATTACGAATAGTGTG 59.497 45.833 0.00 0.00 31.69 3.82
1051 1487 4.330620 CCAACAATTTATTGGCATGCAGAC 59.669 41.667 21.36 2.31 40.25 3.51
1065 2004 9.807649 GTAAATTGCTCATATCTCCAACAATTT 57.192 29.630 13.36 13.36 44.17 1.82
1066 2005 9.193806 AGTAAATTGCTCATATCTCCAACAATT 57.806 29.630 0.00 0.00 37.73 2.32
1176 2115 6.342111 TCATATATGCAGACGTTGTTTACCA 58.658 36.000 7.92 0.00 0.00 3.25
1208 2147 8.512956 TCTAGTGTCTGTTCTAGATGTGTTTAC 58.487 37.037 0.00 0.00 38.05 2.01
1265 2204 3.488890 GCTCTAGTTTCTGCCCTACGTAC 60.489 52.174 0.00 0.00 0.00 3.67
1300 2239 5.986501 TCTCCTTTCTGTTAGAAGTCCTC 57.013 43.478 0.00 0.00 35.37 3.71
1369 2308 1.303888 CATGGCAGGCAAGGACACT 60.304 57.895 0.00 0.00 0.00 3.55
1377 2316 3.647649 CTCGACGACATGGCAGGCA 62.648 63.158 0.00 0.00 0.00 4.75
1581 2523 1.451504 CACACCTCCAACCTCTGCA 59.548 57.895 0.00 0.00 0.00 4.41
1617 2561 0.884704 TTGCTTCACCTCCTGTTCGC 60.885 55.000 0.00 0.00 0.00 4.70
1619 2563 0.868406 CGTTGCTTCACCTCCTGTTC 59.132 55.000 0.00 0.00 0.00 3.18
1620 2564 0.535102 CCGTTGCTTCACCTCCTGTT 60.535 55.000 0.00 0.00 0.00 3.16
1621 2565 1.071471 CCGTTGCTTCACCTCCTGT 59.929 57.895 0.00 0.00 0.00 4.00
1622 2566 0.671781 CTCCGTTGCTTCACCTCCTG 60.672 60.000 0.00 0.00 0.00 3.86
1623 2567 1.674057 CTCCGTTGCTTCACCTCCT 59.326 57.895 0.00 0.00 0.00 3.69
1624 2568 1.376037 CCTCCGTTGCTTCACCTCC 60.376 63.158 0.00 0.00 0.00 4.30
1626 2570 1.831652 CTCCCTCCGTTGCTTCACCT 61.832 60.000 0.00 0.00 0.00 4.00
1627 2571 1.376037 CTCCCTCCGTTGCTTCACC 60.376 63.158 0.00 0.00 0.00 4.02
1628 2572 1.376037 CCTCCCTCCGTTGCTTCAC 60.376 63.158 0.00 0.00 0.00 3.18
1629 2573 3.068881 CCTCCCTCCGTTGCTTCA 58.931 61.111 0.00 0.00 0.00 3.02
1630 2574 2.436824 GCCTCCCTCCGTTGCTTC 60.437 66.667 0.00 0.00 0.00 3.86
1631 2575 4.394712 CGCCTCCCTCCGTTGCTT 62.395 66.667 0.00 0.00 0.00 3.91
1634 2578 2.125512 CTTCGCCTCCCTCCGTTG 60.126 66.667 0.00 0.00 0.00 4.10
1635 2579 2.603776 ACTTCGCCTCCCTCCGTT 60.604 61.111 0.00 0.00 0.00 4.44
1637 2581 2.646175 TTCACTTCGCCTCCCTCCG 61.646 63.158 0.00 0.00 0.00 4.63
1639 2583 0.390472 CTGTTCACTTCGCCTCCCTC 60.390 60.000 0.00 0.00 0.00 4.30
1640 2584 1.674057 CTGTTCACTTCGCCTCCCT 59.326 57.895 0.00 0.00 0.00 4.20
1641 2585 1.376037 CCTGTTCACTTCGCCTCCC 60.376 63.158 0.00 0.00 0.00 4.30
1643 2587 1.294659 CTGCCTGTTCACTTCGCCTC 61.295 60.000 0.00 0.00 0.00 4.70
1644 2588 1.302033 CTGCCTGTTCACTTCGCCT 60.302 57.895 0.00 0.00 0.00 5.52
1645 2589 2.970974 GCTGCCTGTTCACTTCGCC 61.971 63.158 0.00 0.00 0.00 5.54
1646 2590 1.580845 ATGCTGCCTGTTCACTTCGC 61.581 55.000 0.00 0.00 0.00 4.70
1648 2592 0.524862 CCATGCTGCCTGTTCACTTC 59.475 55.000 4.26 0.00 0.00 3.01
1649 2593 1.530013 GCCATGCTGCCTGTTCACTT 61.530 55.000 4.26 0.00 0.00 3.16
1650 2594 1.975407 GCCATGCTGCCTGTTCACT 60.975 57.895 4.26 0.00 0.00 3.41
1651 2595 1.808531 TTGCCATGCTGCCTGTTCAC 61.809 55.000 4.26 0.00 0.00 3.18
1653 2597 0.033781 TTTTGCCATGCTGCCTGTTC 59.966 50.000 4.26 0.00 0.00 3.18
1655 2599 0.688487 ATTTTTGCCATGCTGCCTGT 59.312 45.000 4.26 0.00 0.00 4.00
1656 2600 1.816074 AATTTTTGCCATGCTGCCTG 58.184 45.000 0.00 0.00 0.00 4.85
1657 2601 2.833338 TCTAATTTTTGCCATGCTGCCT 59.167 40.909 0.00 0.00 0.00 4.75
1659 2603 3.587923 TGTCTAATTTTTGCCATGCTGC 58.412 40.909 0.00 0.00 0.00 5.25
1660 2604 4.501559 CGATGTCTAATTTTTGCCATGCTG 59.498 41.667 0.00 0.00 0.00 4.41
1661 2605 4.440525 CCGATGTCTAATTTTTGCCATGCT 60.441 41.667 0.00 0.00 0.00 3.79
1662 2606 3.798337 CCGATGTCTAATTTTTGCCATGC 59.202 43.478 0.00 0.00 0.00 4.06
1663 2607 3.798337 GCCGATGTCTAATTTTTGCCATG 59.202 43.478 0.00 0.00 0.00 3.66
1664 2608 3.701040 AGCCGATGTCTAATTTTTGCCAT 59.299 39.130 0.00 0.00 0.00 4.40
1665 2609 3.088532 AGCCGATGTCTAATTTTTGCCA 58.911 40.909 0.00 0.00 0.00 4.92
1667 2611 3.181510 ACGAGCCGATGTCTAATTTTTGC 60.182 43.478 1.50 0.00 0.00 3.68
1668 2612 4.600012 ACGAGCCGATGTCTAATTTTTG 57.400 40.909 1.50 0.00 0.00 2.44
1669 2613 4.094442 GGAACGAGCCGATGTCTAATTTTT 59.906 41.667 1.50 0.00 0.00 1.94
1671 2615 3.195661 GGAACGAGCCGATGTCTAATTT 58.804 45.455 1.50 0.00 0.00 1.82
1672 2616 2.483188 GGGAACGAGCCGATGTCTAATT 60.483 50.000 1.50 0.00 0.00 1.40
1673 2617 1.068741 GGGAACGAGCCGATGTCTAAT 59.931 52.381 1.50 0.00 0.00 1.73
1674 2618 0.458669 GGGAACGAGCCGATGTCTAA 59.541 55.000 1.50 0.00 0.00 2.10
1675 2619 2.112898 GGGAACGAGCCGATGTCTA 58.887 57.895 1.50 0.00 0.00 2.59
1676 2620 2.893398 GGGAACGAGCCGATGTCT 59.107 61.111 1.50 0.00 0.00 3.41
1738 2696 3.390967 TGAGAACAAGAGGGACATTCACA 59.609 43.478 0.00 0.00 0.00 3.58
1742 2700 3.009916 AGCATGAGAACAAGAGGGACATT 59.990 43.478 0.00 0.00 0.00 2.71
1786 2744 3.391626 GAGTTGGACCTCCTTATAAGGGG 59.608 52.174 27.65 25.35 46.75 4.79
1811 2769 4.910458 AGTCCCACATTGCTAGTTTAGT 57.090 40.909 0.00 0.00 0.00 2.24
1831 2789 8.265764 AGGCAAGGGATACTACTAAAAGTTTAG 58.734 37.037 8.88 8.88 44.37 1.85
1837 2795 5.190677 GCAAGGCAAGGGATACTACTAAAA 58.809 41.667 0.00 0.00 0.00 1.52
1844 2802 0.698238 TGTGCAAGGCAAGGGATACT 59.302 50.000 0.00 0.00 41.47 2.12
1845 2803 1.544724 TTGTGCAAGGCAAGGGATAC 58.455 50.000 0.00 0.00 41.47 2.24
1846 2804 2.300956 TTTGTGCAAGGCAAGGGATA 57.699 45.000 0.00 0.00 41.47 2.59
1848 2806 0.968405 GATTTGTGCAAGGCAAGGGA 59.032 50.000 0.00 0.00 41.47 4.20
1850 2808 0.388907 CCGATTTGTGCAAGGCAAGG 60.389 55.000 0.00 0.00 41.47 3.61
1861 2819 0.679960 GGCCCACTTAGCCGATTTGT 60.680 55.000 0.00 0.00 41.41 2.83
1863 2821 4.657952 GGCCCACTTAGCCGATTT 57.342 55.556 0.00 0.00 41.41 2.17
1872 2830 5.310857 CCTAATAAATCCTAGAGGCCCACTT 59.689 44.000 0.00 0.00 34.44 3.16
1873 2831 4.846940 CCTAATAAATCCTAGAGGCCCACT 59.153 45.833 0.00 1.43 34.44 4.00
1918 2876 5.127031 TGGAATTTAGTCTATTTTGGGCAGC 59.873 40.000 0.00 0.00 0.00 5.25
1919 2877 6.681368 GCTGGAATTTAGTCTATTTTGGGCAG 60.681 42.308 0.00 0.00 0.00 4.85
1920 2878 5.127031 GCTGGAATTTAGTCTATTTTGGGCA 59.873 40.000 0.00 0.00 0.00 5.36
1934 2892 5.929058 TGCCACATTTATGCTGGAATTTA 57.071 34.783 12.51 0.00 33.59 1.40
1984 2945 7.065563 AGACATTAGACTGTGCATTTTCATCTC 59.934 37.037 0.00 0.00 0.00 2.75
1990 2951 4.082571 GCCAGACATTAGACTGTGCATTTT 60.083 41.667 0.00 0.00 36.07 1.82
1997 2958 2.899900 TCAGTGCCAGACATTAGACTGT 59.100 45.455 0.00 0.00 36.07 3.55
2004 2965 0.330604 AGCCATCAGTGCCAGACATT 59.669 50.000 0.00 0.00 0.00 2.71
2023 2984 3.706373 GCTCAGAGGCCCGTTCCA 61.706 66.667 0.00 0.00 0.00 3.53
2036 2997 0.950555 GCACTGGTGATCGTTGCTCA 60.951 55.000 4.79 0.00 0.00 4.26
2125 3086 3.394606 TCCCTCAGTTTGCCTTAGTTTCT 59.605 43.478 0.00 0.00 0.00 2.52
2167 3129 5.697067 AGTAACAACAACATAAACTGGGGA 58.303 37.500 0.00 0.00 0.00 4.81
2201 3163 5.407407 ACGTATCTCATTCCAACTGACTT 57.593 39.130 0.00 0.00 0.00 3.01
2212 3174 6.115446 ACATTGACATGGAACGTATCTCATT 58.885 36.000 0.00 0.00 34.27 2.57
2221 3183 4.151689 ACGTAGAAACATTGACATGGAACG 59.848 41.667 0.00 0.00 34.27 3.95
2241 3206 1.749634 GGTGCTACAGATGGACTACGT 59.250 52.381 0.00 0.00 0.00 3.57
2300 3277 6.832520 AGTACATCAGTAGCATCTAGGATG 57.167 41.667 0.00 3.44 38.40 3.51
2307 3284 8.759641 CAATTCAACTAGTACATCAGTAGCATC 58.240 37.037 0.00 0.00 33.97 3.91
2324 3301 7.439356 CACATATGAGTATCCGTCAATTCAACT 59.561 37.037 10.38 0.00 0.00 3.16
2375 3352 8.531982 AGCACACTTTACAGTATCTTAGATTCA 58.468 33.333 0.00 0.00 0.00 2.57
2379 3356 7.120285 ACGTAGCACACTTTACAGTATCTTAGA 59.880 37.037 0.00 0.00 0.00 2.10
2439 3434 6.462487 CCGAGGGATGCTTTGTTAGAAGTATA 60.462 42.308 0.00 0.00 33.04 1.47
2440 3435 5.360591 CGAGGGATGCTTTGTTAGAAGTAT 58.639 41.667 0.00 0.00 35.14 2.12
2441 3436 4.382685 CCGAGGGATGCTTTGTTAGAAGTA 60.383 45.833 0.00 0.00 0.00 2.24
2442 3437 3.600388 CGAGGGATGCTTTGTTAGAAGT 58.400 45.455 0.00 0.00 0.00 3.01
2451 3454 0.543749 CTCTTCCCGAGGGATGCTTT 59.456 55.000 12.27 0.00 44.74 3.51
2466 3469 8.870075 AACAAGAATAAACCTAAGCATCTCTT 57.130 30.769 0.00 0.00 38.79 2.85
2496 4881 3.199880 AGGTGTGTTCTTTCCTGTGAG 57.800 47.619 0.00 0.00 0.00 3.51
2500 4885 3.287222 TCCAAAGGTGTGTTCTTTCCTG 58.713 45.455 0.00 0.00 32.72 3.86
2536 4921 4.521130 TCAGCACGAGTTTAGACTTGAT 57.479 40.909 7.64 0.00 39.29 2.57
2545 4930 1.895798 TCTGGAGATCAGCACGAGTTT 59.104 47.619 0.00 0.00 43.06 2.66
2551 4936 3.932089 GACTTTCTTCTGGAGATCAGCAC 59.068 47.826 0.00 0.00 43.06 4.40
2554 4939 3.119173 AGCGACTTTCTTCTGGAGATCAG 60.119 47.826 0.00 0.00 44.68 2.90
2601 5000 6.424812 GCTGCATTTTACAAAGTTGAAGGAAT 59.575 34.615 0.00 0.00 0.00 3.01
2611 5010 3.656559 AGGCTTGCTGCATTTTACAAAG 58.343 40.909 1.84 0.00 45.15 2.77
2658 5886 4.495690 TGGTATATTTACAGGCACAGCA 57.504 40.909 0.00 0.00 0.00 4.41
2702 5934 5.468072 ACTGATTTTGCTTGTGTCAGTCTAG 59.532 40.000 0.82 0.00 44.37 2.43
2779 6303 4.589908 TCTTGCAAGAATAGGAAACCTCC 58.410 43.478 26.61 0.00 35.42 4.30
2780 6304 5.249420 ACTCTTGCAAGAATAGGAAACCTC 58.751 41.667 28.16 0.00 32.79 3.85
2833 6357 5.810074 GCAACACTGTTAGGACAACAATTTT 59.190 36.000 0.00 0.00 34.85 1.82
2919 6455 3.648339 TTCAGGCTTTCAGCATTGTTC 57.352 42.857 0.00 0.00 44.75 3.18
3027 6563 9.703892 CTCAATTGTGGTCCAATAAATGTTAAA 57.296 29.630 5.13 0.00 43.04 1.52
3029 6565 8.642935 TCTCAATTGTGGTCCAATAAATGTTA 57.357 30.769 5.13 0.00 43.04 2.41
3047 6583 6.511767 CGGTTATTAGCTCGCATTTCTCAATT 60.512 38.462 0.00 0.00 0.00 2.32
3060 6596 4.875544 TGCATTTGACGGTTATTAGCTC 57.124 40.909 0.00 0.00 0.00 4.09
3070 6606 5.947228 ATGGAGTTATATGCATTTGACGG 57.053 39.130 3.54 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.