Multiple sequence alignment - TraesCS2B01G062200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G062200 chr2B 100.000 2222 0 0 1 2222 29722460 29720239 0.000000e+00 4104
1 TraesCS2B01G062200 chr2B 85.933 718 85 13 431 1137 29737240 29736528 0.000000e+00 752
2 TraesCS2B01G062200 chr2B 78.719 874 158 12 443 1312 29743786 29742937 1.930000e-155 558
3 TraesCS2B01G062200 chr2B 87.029 478 54 6 704 1177 29731382 29730909 1.170000e-147 532
4 TraesCS2B01G062200 chr2B 88.889 450 24 12 1 430 796276727 796277170 4.200000e-147 531
5 TraesCS2B01G062200 chr2B 93.939 99 6 0 611 709 29732156 29732058 1.370000e-32 150
6 TraesCS2B01G062200 chr2D 88.135 1812 153 28 431 2218 17497041 17498814 0.000000e+00 2098
7 TraesCS2B01G062200 chr2D 85.925 746 90 13 432 1165 17464824 17465566 0.000000e+00 782
8 TraesCS2B01G062200 chr2A 88.616 1748 144 26 431 2161 18909509 18911218 0.000000e+00 2074
9 TraesCS2B01G062200 chr2A 86.212 747 89 12 431 1165 18881201 18881945 0.000000e+00 797
10 TraesCS2B01G062200 chr2A 88.090 445 48 2 431 875 18899529 18899968 7.030000e-145 523
11 TraesCS2B01G062200 chr2A 77.045 880 163 19 441 1309 18858779 18859630 9.290000e-129 470
12 TraesCS2B01G062200 chr7D 88.824 340 22 9 95 432 531637453 531637128 9.560000e-109 403
13 TraesCS2B01G062200 chr5D 87.921 356 25 9 96 440 450544377 450544029 9.560000e-109 403
14 TraesCS2B01G062200 chr5D 86.740 362 21 16 92 440 486091228 486090881 5.790000e-101 377
15 TraesCS2B01G062200 chr4D 87.675 357 23 10 92 436 108317883 108317536 1.600000e-106 396
16 TraesCS2B01G062200 chr4D 86.921 367 29 9 96 451 506195299 506194941 5.750000e-106 394
17 TraesCS2B01G062200 chr6D 87.187 359 27 8 92 440 315352165 315351816 7.440000e-105 390
18 TraesCS2B01G062200 chr6D 87.187 359 18 13 92 439 464841951 464842292 1.240000e-102 383
19 TraesCS2B01G062200 chr4A 83.262 466 34 15 1 430 614545599 614546056 2.680000e-104 388
20 TraesCS2B01G062200 chr5B 86.127 346 35 7 92 431 7067784 7068122 5.830000e-96 361
21 TraesCS2B01G062200 chr5B 80.274 365 35 18 88 439 685659482 685659822 7.930000e-60 241
22 TraesCS2B01G062200 chr1B 81.421 366 32 18 88 439 453202107 453201764 1.310000e-67 267
23 TraesCS2B01G062200 chr1B 79.396 364 44 17 88 440 403529969 403529626 6.170000e-56 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G062200 chr2B 29720239 29722460 2221 True 4104 4104 100.000 1 2222 1 chr2B.!!$R1 2221
1 TraesCS2B01G062200 chr2B 29736528 29737240 712 True 752 752 85.933 431 1137 1 chr2B.!!$R2 706
2 TraesCS2B01G062200 chr2B 29742937 29743786 849 True 558 558 78.719 443 1312 1 chr2B.!!$R3 869
3 TraesCS2B01G062200 chr2B 29730909 29732156 1247 True 341 532 90.484 611 1177 2 chr2B.!!$R4 566
4 TraesCS2B01G062200 chr2D 17497041 17498814 1773 False 2098 2098 88.135 431 2218 1 chr2D.!!$F2 1787
5 TraesCS2B01G062200 chr2D 17464824 17465566 742 False 782 782 85.925 432 1165 1 chr2D.!!$F1 733
6 TraesCS2B01G062200 chr2A 18909509 18911218 1709 False 2074 2074 88.616 431 2161 1 chr2A.!!$F4 1730
7 TraesCS2B01G062200 chr2A 18881201 18881945 744 False 797 797 86.212 431 1165 1 chr2A.!!$F2 734
8 TraesCS2B01G062200 chr2A 18858779 18859630 851 False 470 470 77.045 441 1309 1 chr2A.!!$F1 868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
296 297 0.028374 GGTCAAAACCGGTCAACGTG 59.972 55.0 8.04 1.77 42.24 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2782 0.046242 AAGATCCATGGTCTCCCCCA 59.954 55.0 12.58 0.0 39.27 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.853468 TTTGGGATCCAGTATGCTTACA 57.147 40.909 15.23 0.00 33.81 2.41
43 44 5.387113 TTTGGGATCCAGTATGCTTACAT 57.613 39.130 15.23 0.00 36.05 2.29
44 45 4.356405 TGGGATCCAGTATGCTTACATG 57.644 45.455 15.23 7.20 37.04 3.21
45 46 3.077359 GGGATCCAGTATGCTTACATGC 58.923 50.000 15.23 2.84 39.02 4.06
46 47 7.393121 TTGGGATCCAGTATGCTTACATGCA 62.393 44.000 15.23 0.00 40.99 3.96
47 48 3.499918 GGATCCAGTATGCTTACATGCAC 59.500 47.826 6.95 1.49 46.33 4.57
48 49 3.625649 TCCAGTATGCTTACATGCACA 57.374 42.857 11.89 0.00 46.33 4.57
49 50 3.949132 TCCAGTATGCTTACATGCACAA 58.051 40.909 11.89 0.00 46.33 3.33
50 51 3.940852 TCCAGTATGCTTACATGCACAAG 59.059 43.478 11.89 0.00 46.33 3.16
51 52 3.065786 CCAGTATGCTTACATGCACAAGG 59.934 47.826 11.89 0.00 46.33 3.61
52 53 3.691118 CAGTATGCTTACATGCACAAGGT 59.309 43.478 11.89 0.00 46.33 3.50
53 54 3.691118 AGTATGCTTACATGCACAAGGTG 59.309 43.478 11.89 0.00 46.33 4.00
62 63 4.258206 CACAAGGTGCCACCAACT 57.742 55.556 17.80 0.00 41.93 3.16
64 65 0.823460 CACAAGGTGCCACCAACTTT 59.177 50.000 17.80 0.00 46.61 2.66
65 66 1.206849 CACAAGGTGCCACCAACTTTT 59.793 47.619 17.80 0.00 46.61 2.27
66 67 1.480545 ACAAGGTGCCACCAACTTTTC 59.519 47.619 17.80 0.00 46.61 2.29
67 68 1.119684 AAGGTGCCACCAACTTTTCC 58.880 50.000 17.80 0.00 46.61 3.13
68 69 0.261696 AGGTGCCACCAACTTTTCCT 59.738 50.000 17.80 0.00 41.95 3.36
69 70 0.389025 GGTGCCACCAACTTTTCCTG 59.611 55.000 9.55 0.00 38.42 3.86
70 71 0.249447 GTGCCACCAACTTTTCCTGC 60.249 55.000 0.00 0.00 0.00 4.85
71 72 0.396974 TGCCACCAACTTTTCCTGCT 60.397 50.000 0.00 0.00 0.00 4.24
72 73 0.315251 GCCACCAACTTTTCCTGCTC 59.685 55.000 0.00 0.00 0.00 4.26
73 74 1.986882 CCACCAACTTTTCCTGCTCT 58.013 50.000 0.00 0.00 0.00 4.09
74 75 2.310538 CCACCAACTTTTCCTGCTCTT 58.689 47.619 0.00 0.00 0.00 2.85
75 76 2.695147 CCACCAACTTTTCCTGCTCTTT 59.305 45.455 0.00 0.00 0.00 2.52
76 77 3.132824 CCACCAACTTTTCCTGCTCTTTT 59.867 43.478 0.00 0.00 0.00 2.27
77 78 4.114794 CACCAACTTTTCCTGCTCTTTTG 58.885 43.478 0.00 0.00 0.00 2.44
78 79 4.023291 ACCAACTTTTCCTGCTCTTTTGA 58.977 39.130 0.00 0.00 0.00 2.69
79 80 4.142160 ACCAACTTTTCCTGCTCTTTTGAC 60.142 41.667 0.00 0.00 0.00 3.18
80 81 4.142182 CCAACTTTTCCTGCTCTTTTGACA 60.142 41.667 0.00 0.00 0.00 3.58
81 82 4.639135 ACTTTTCCTGCTCTTTTGACAC 57.361 40.909 0.00 0.00 0.00 3.67
82 83 4.273318 ACTTTTCCTGCTCTTTTGACACT 58.727 39.130 0.00 0.00 0.00 3.55
83 84 4.336713 ACTTTTCCTGCTCTTTTGACACTC 59.663 41.667 0.00 0.00 0.00 3.51
84 85 2.154854 TCCTGCTCTTTTGACACTCG 57.845 50.000 0.00 0.00 0.00 4.18
85 86 1.686587 TCCTGCTCTTTTGACACTCGA 59.313 47.619 0.00 0.00 0.00 4.04
86 87 2.064762 CCTGCTCTTTTGACACTCGAG 58.935 52.381 11.84 11.84 0.00 4.04
87 88 2.064762 CTGCTCTTTTGACACTCGAGG 58.935 52.381 18.41 8.36 0.00 4.63
88 89 1.686587 TGCTCTTTTGACACTCGAGGA 59.313 47.619 18.41 0.30 0.00 3.71
89 90 2.300152 TGCTCTTTTGACACTCGAGGAT 59.700 45.455 18.41 3.54 0.00 3.24
90 91 3.244215 TGCTCTTTTGACACTCGAGGATT 60.244 43.478 18.41 0.00 0.00 3.01
91 92 4.021456 TGCTCTTTTGACACTCGAGGATTA 60.021 41.667 18.41 0.00 0.00 1.75
92 93 5.112686 GCTCTTTTGACACTCGAGGATTAT 58.887 41.667 18.41 0.00 0.00 1.28
93 94 5.582665 GCTCTTTTGACACTCGAGGATTATT 59.417 40.000 18.41 0.00 0.00 1.40
94 95 6.757010 GCTCTTTTGACACTCGAGGATTATTA 59.243 38.462 18.41 0.00 0.00 0.98
95 96 7.439655 GCTCTTTTGACACTCGAGGATTATTAT 59.560 37.037 18.41 0.00 0.00 1.28
96 97 9.319143 CTCTTTTGACACTCGAGGATTATTATT 57.681 33.333 18.41 0.00 0.00 1.40
97 98 9.667107 TCTTTTGACACTCGAGGATTATTATTT 57.333 29.630 18.41 0.00 0.00 1.40
101 102 9.443323 TTGACACTCGAGGATTATTATTTTTGA 57.557 29.630 18.41 0.00 0.00 2.69
102 103 9.443323 TGACACTCGAGGATTATTATTTTTGAA 57.557 29.630 18.41 0.00 0.00 2.69
154 155 2.631160 TTTTTCCACGAGCTCCTTGA 57.369 45.000 8.47 0.00 0.00 3.02
155 156 2.169832 TTTTCCACGAGCTCCTTGAG 57.830 50.000 8.47 0.00 0.00 3.02
156 157 1.048601 TTTCCACGAGCTCCTTGAGT 58.951 50.000 8.47 0.00 31.39 3.41
157 158 0.318441 TTCCACGAGCTCCTTGAGTG 59.682 55.000 8.47 9.80 31.39 3.51
158 159 0.827925 TCCACGAGCTCCTTGAGTGT 60.828 55.000 8.47 0.00 31.39 3.55
159 160 0.389166 CCACGAGCTCCTTGAGTGTC 60.389 60.000 8.47 0.00 31.39 3.67
160 161 0.315251 CACGAGCTCCTTGAGTGTCA 59.685 55.000 8.47 0.00 31.39 3.58
161 162 1.040646 ACGAGCTCCTTGAGTGTCAA 58.959 50.000 8.47 0.00 34.79 3.18
162 163 1.412710 ACGAGCTCCTTGAGTGTCAAA 59.587 47.619 8.47 0.00 35.73 2.69
163 164 2.158957 ACGAGCTCCTTGAGTGTCAAAA 60.159 45.455 8.47 0.00 35.73 2.44
164 165 2.478134 CGAGCTCCTTGAGTGTCAAAAG 59.522 50.000 8.47 0.00 35.73 2.27
165 166 2.810852 GAGCTCCTTGAGTGTCAAAAGG 59.189 50.000 0.87 4.51 41.60 3.11
166 167 2.439507 AGCTCCTTGAGTGTCAAAAGGA 59.560 45.455 10.83 10.83 45.63 3.36
167 168 2.550180 GCTCCTTGAGTGTCAAAAGGAC 59.450 50.000 8.25 0.00 43.53 3.85
182 183 7.336975 GTCAAAAGGACATGAAATTTTGTTCG 58.663 34.615 21.66 7.63 46.19 3.95
183 184 5.905480 AAAGGACATGAAATTTTGTTCGC 57.095 34.783 0.00 0.00 0.00 4.70
184 185 4.582701 AGGACATGAAATTTTGTTCGCA 57.417 36.364 0.00 0.00 0.00 5.10
185 186 5.138125 AGGACATGAAATTTTGTTCGCAT 57.862 34.783 0.00 0.00 0.00 4.73
186 187 5.163513 AGGACATGAAATTTTGTTCGCATC 58.836 37.500 0.00 0.00 0.00 3.91
187 188 5.047802 AGGACATGAAATTTTGTTCGCATCT 60.048 36.000 0.00 0.00 0.00 2.90
188 189 5.634859 GGACATGAAATTTTGTTCGCATCTT 59.365 36.000 0.00 0.00 0.00 2.40
189 190 6.806249 GGACATGAAATTTTGTTCGCATCTTA 59.194 34.615 0.00 0.00 0.00 2.10
190 191 7.328249 GGACATGAAATTTTGTTCGCATCTTAA 59.672 33.333 0.00 0.00 0.00 1.85
191 192 8.231304 ACATGAAATTTTGTTCGCATCTTAAG 57.769 30.769 0.00 0.00 0.00 1.85
192 193 6.689178 TGAAATTTTGTTCGCATCTTAAGC 57.311 33.333 0.00 0.00 0.00 3.09
193 194 6.212235 TGAAATTTTGTTCGCATCTTAAGCA 58.788 32.000 0.00 0.00 0.00 3.91
194 195 6.867816 TGAAATTTTGTTCGCATCTTAAGCAT 59.132 30.769 0.00 0.00 0.00 3.79
195 196 8.026026 TGAAATTTTGTTCGCATCTTAAGCATA 58.974 29.630 0.00 0.00 0.00 3.14
196 197 8.931385 AAATTTTGTTCGCATCTTAAGCATAT 57.069 26.923 0.00 0.00 0.00 1.78
197 198 8.931385 AATTTTGTTCGCATCTTAAGCATATT 57.069 26.923 0.00 0.00 0.00 1.28
198 199 7.969387 TTTTGTTCGCATCTTAAGCATATTC 57.031 32.000 0.00 0.00 0.00 1.75
199 200 5.328886 TGTTCGCATCTTAAGCATATTCG 57.671 39.130 0.00 0.00 0.00 3.34
200 201 5.047188 TGTTCGCATCTTAAGCATATTCGA 58.953 37.500 0.00 0.00 0.00 3.71
201 202 5.051039 TGTTCGCATCTTAAGCATATTCGAC 60.051 40.000 0.00 0.00 0.00 4.20
202 203 3.987868 TCGCATCTTAAGCATATTCGACC 59.012 43.478 0.00 0.00 0.00 4.79
203 204 3.123621 CGCATCTTAAGCATATTCGACCC 59.876 47.826 0.00 0.00 0.00 4.46
204 205 3.437049 GCATCTTAAGCATATTCGACCCC 59.563 47.826 0.00 0.00 0.00 4.95
205 206 4.641396 CATCTTAAGCATATTCGACCCCA 58.359 43.478 0.00 0.00 0.00 4.96
206 207 4.764050 TCTTAAGCATATTCGACCCCAA 57.236 40.909 0.00 0.00 0.00 4.12
207 208 5.105567 TCTTAAGCATATTCGACCCCAAA 57.894 39.130 0.00 0.00 0.00 3.28
208 209 5.502079 TCTTAAGCATATTCGACCCCAAAA 58.498 37.500 0.00 0.00 0.00 2.44
209 210 5.946972 TCTTAAGCATATTCGACCCCAAAAA 59.053 36.000 0.00 0.00 0.00 1.94
233 234 9.671279 AAAATTTCAGATTGTTTTGAAGGTTCT 57.329 25.926 0.00 0.00 35.01 3.01
234 235 9.671279 AAATTTCAGATTGTTTTGAAGGTTCTT 57.329 25.926 0.00 0.00 35.01 2.52
235 236 9.671279 AATTTCAGATTGTTTTGAAGGTTCTTT 57.329 25.926 0.00 0.00 35.01 2.52
264 265 9.801873 ATATTTTTCAAATTACTGTTCATCGGG 57.198 29.630 0.00 0.00 0.00 5.14
265 266 4.695217 TTCAAATTACTGTTCATCGGGC 57.305 40.909 0.00 0.00 0.00 6.13
266 267 2.675844 TCAAATTACTGTTCATCGGGCG 59.324 45.455 0.00 0.00 0.00 6.13
267 268 1.663695 AATTACTGTTCATCGGGCGG 58.336 50.000 0.00 0.00 0.00 6.13
268 269 0.539986 ATTACTGTTCATCGGGCGGT 59.460 50.000 0.00 0.00 0.00 5.68
269 270 0.322322 TTACTGTTCATCGGGCGGTT 59.678 50.000 0.00 0.00 0.00 4.44
270 271 0.322322 TACTGTTCATCGGGCGGTTT 59.678 50.000 0.00 0.00 0.00 3.27
271 272 0.536460 ACTGTTCATCGGGCGGTTTT 60.536 50.000 0.00 0.00 0.00 2.43
272 273 0.109781 CTGTTCATCGGGCGGTTTTG 60.110 55.000 0.00 0.00 0.00 2.44
273 274 0.820074 TGTTCATCGGGCGGTTTTGT 60.820 50.000 0.00 0.00 0.00 2.83
274 275 0.386731 GTTCATCGGGCGGTTTTGTG 60.387 55.000 0.00 0.00 0.00 3.33
275 276 1.519751 TTCATCGGGCGGTTTTGTGG 61.520 55.000 0.00 0.00 0.00 4.17
276 277 3.370231 ATCGGGCGGTTTTGTGGC 61.370 61.111 0.00 0.00 0.00 5.01
280 281 4.337060 GGCGGTTTTGTGGCGGTC 62.337 66.667 0.00 0.00 0.00 4.79
281 282 3.587933 GCGGTTTTGTGGCGGTCA 61.588 61.111 0.00 0.00 0.00 4.02
282 283 3.111939 CGGTTTTGTGGCGGTCAA 58.888 55.556 0.00 0.00 0.00 3.18
283 284 1.433879 CGGTTTTGTGGCGGTCAAA 59.566 52.632 0.00 0.00 33.76 2.69
284 285 0.179134 CGGTTTTGTGGCGGTCAAAA 60.179 50.000 9.69 9.69 40.77 2.44
286 287 3.742983 TTTTGTGGCGGTCAAAACC 57.257 47.368 9.69 0.00 39.03 3.27
295 296 2.396700 GGTCAAAACCGGTCAACGT 58.603 52.632 8.04 0.00 42.24 3.99
296 297 0.028374 GGTCAAAACCGGTCAACGTG 59.972 55.000 8.04 1.77 42.24 4.49
297 298 0.590481 GTCAAAACCGGTCAACGTGC 60.590 55.000 8.04 0.00 42.24 5.34
298 299 0.745128 TCAAAACCGGTCAACGTGCT 60.745 50.000 8.04 0.00 42.24 4.40
299 300 0.316689 CAAAACCGGTCAACGTGCTC 60.317 55.000 8.04 0.00 42.24 4.26
300 301 0.745128 AAAACCGGTCAACGTGCTCA 60.745 50.000 8.04 0.00 42.24 4.26
301 302 0.745128 AAACCGGTCAACGTGCTCAA 60.745 50.000 8.04 0.00 42.24 3.02
302 303 0.745128 AACCGGTCAACGTGCTCAAA 60.745 50.000 8.04 0.00 42.24 2.69
303 304 0.745128 ACCGGTCAACGTGCTCAAAA 60.745 50.000 0.00 0.00 42.24 2.44
304 305 0.591170 CCGGTCAACGTGCTCAAAAT 59.409 50.000 0.00 0.00 42.24 1.82
305 306 1.399727 CCGGTCAACGTGCTCAAAATC 60.400 52.381 0.00 0.00 42.24 2.17
306 307 1.531149 CGGTCAACGTGCTCAAAATCT 59.469 47.619 0.00 0.00 37.93 2.40
307 308 2.734606 CGGTCAACGTGCTCAAAATCTA 59.265 45.455 0.00 0.00 37.93 1.98
308 309 3.181530 CGGTCAACGTGCTCAAAATCTAG 60.182 47.826 0.00 0.00 37.93 2.43
309 310 3.746492 GGTCAACGTGCTCAAAATCTAGT 59.254 43.478 0.00 0.00 0.00 2.57
310 311 4.213482 GGTCAACGTGCTCAAAATCTAGTT 59.787 41.667 0.00 0.00 0.00 2.24
311 312 5.277828 GGTCAACGTGCTCAAAATCTAGTTT 60.278 40.000 0.00 0.00 0.00 2.66
312 313 6.073440 GGTCAACGTGCTCAAAATCTAGTTTA 60.073 38.462 0.00 0.00 0.00 2.01
313 314 7.010023 GTCAACGTGCTCAAAATCTAGTTTAG 58.990 38.462 0.00 0.00 0.00 1.85
314 315 6.147164 TCAACGTGCTCAAAATCTAGTTTAGG 59.853 38.462 0.00 0.00 0.00 2.69
315 316 5.790593 ACGTGCTCAAAATCTAGTTTAGGA 58.209 37.500 0.00 0.00 0.00 2.94
316 317 5.638234 ACGTGCTCAAAATCTAGTTTAGGAC 59.362 40.000 0.00 0.00 0.00 3.85
317 318 5.063564 CGTGCTCAAAATCTAGTTTAGGACC 59.936 44.000 0.00 0.00 0.00 4.46
318 319 5.938125 GTGCTCAAAATCTAGTTTAGGACCA 59.062 40.000 0.00 0.00 0.00 4.02
319 320 6.430000 GTGCTCAAAATCTAGTTTAGGACCAA 59.570 38.462 0.00 0.00 0.00 3.67
320 321 7.001674 TGCTCAAAATCTAGTTTAGGACCAAA 58.998 34.615 0.00 0.00 0.00 3.28
321 322 7.040686 TGCTCAAAATCTAGTTTAGGACCAAAC 60.041 37.037 10.02 10.02 38.44 2.93
323 324 8.990163 TCAAAATCTAGTTTAGGACCAAACTT 57.010 30.769 20.14 6.80 44.40 2.66
327 328 9.682465 AAATCTAGTTTAGGACCAAACTTATCC 57.318 33.333 20.14 0.00 44.40 2.59
328 329 6.870769 TCTAGTTTAGGACCAAACTTATCCG 58.129 40.000 20.14 9.58 44.40 4.18
329 330 4.840271 AGTTTAGGACCAAACTTATCCGG 58.160 43.478 13.23 0.00 44.40 5.14
330 331 4.287845 AGTTTAGGACCAAACTTATCCGGT 59.712 41.667 0.00 0.00 44.40 5.28
331 332 4.914177 TTAGGACCAAACTTATCCGGTT 57.086 40.909 0.00 0.00 37.60 4.44
332 333 3.801307 AGGACCAAACTTATCCGGTTT 57.199 42.857 0.00 0.00 37.60 3.27
333 334 4.108501 AGGACCAAACTTATCCGGTTTT 57.891 40.909 0.00 0.00 37.60 2.43
334 335 3.824443 AGGACCAAACTTATCCGGTTTTG 59.176 43.478 0.00 4.96 37.60 2.44
335 336 3.822167 GGACCAAACTTATCCGGTTTTGA 59.178 43.478 0.00 0.00 35.09 2.69
336 337 4.278919 GGACCAAACTTATCCGGTTTTGAA 59.721 41.667 0.00 0.00 35.09 2.69
337 338 5.221283 GGACCAAACTTATCCGGTTTTGAAA 60.221 40.000 0.00 0.00 35.09 2.69
338 339 5.593968 ACCAAACTTATCCGGTTTTGAAAC 58.406 37.500 0.00 0.00 35.09 2.78
339 340 5.361571 ACCAAACTTATCCGGTTTTGAAACT 59.638 36.000 0.00 0.00 38.89 2.66
340 341 6.127281 ACCAAACTTATCCGGTTTTGAAACTT 60.127 34.615 0.00 0.00 38.89 2.66
341 342 6.200097 CCAAACTTATCCGGTTTTGAAACTTG 59.800 38.462 0.00 0.00 38.89 3.16
342 343 6.702716 AACTTATCCGGTTTTGAAACTTGA 57.297 33.333 0.00 4.41 38.89 3.02
343 344 6.313744 ACTTATCCGGTTTTGAAACTTGAG 57.686 37.500 0.00 1.06 38.89 3.02
344 345 5.240844 ACTTATCCGGTTTTGAAACTTGAGG 59.759 40.000 0.00 5.86 38.89 3.86
345 346 2.303175 TCCGGTTTTGAAACTTGAGGG 58.697 47.619 0.00 2.20 38.89 4.30
346 347 2.092321 TCCGGTTTTGAAACTTGAGGGA 60.092 45.455 0.00 4.08 38.89 4.20
347 348 2.034179 CCGGTTTTGAAACTTGAGGGAC 59.966 50.000 6.57 0.00 38.89 4.46
348 349 2.034179 CGGTTTTGAAACTTGAGGGACC 59.966 50.000 6.57 0.00 38.89 4.46
349 350 3.028130 GGTTTTGAAACTTGAGGGACCA 58.972 45.455 6.57 0.00 38.89 4.02
350 351 3.449377 GGTTTTGAAACTTGAGGGACCAA 59.551 43.478 6.57 0.00 38.89 3.67
351 352 4.081365 GGTTTTGAAACTTGAGGGACCAAA 60.081 41.667 6.57 0.00 38.89 3.28
352 353 5.396324 GGTTTTGAAACTTGAGGGACCAAAT 60.396 40.000 6.57 0.00 38.89 2.32
353 354 4.935352 TTGAAACTTGAGGGACCAAATG 57.065 40.909 0.00 0.00 0.00 2.32
354 355 3.909732 TGAAACTTGAGGGACCAAATGT 58.090 40.909 0.00 0.00 0.00 2.71
355 356 5.055265 TGAAACTTGAGGGACCAAATGTA 57.945 39.130 0.00 0.00 0.00 2.29
356 357 5.640147 TGAAACTTGAGGGACCAAATGTAT 58.360 37.500 0.00 0.00 0.00 2.29
357 358 6.785076 TGAAACTTGAGGGACCAAATGTATA 58.215 36.000 0.00 0.00 0.00 1.47
358 359 6.657541 TGAAACTTGAGGGACCAAATGTATAC 59.342 38.462 0.00 0.00 0.00 1.47
359 360 5.112129 ACTTGAGGGACCAAATGTATACC 57.888 43.478 0.00 0.00 0.00 2.73
360 361 4.538490 ACTTGAGGGACCAAATGTATACCA 59.462 41.667 0.00 0.00 0.00 3.25
361 362 5.014755 ACTTGAGGGACCAAATGTATACCAA 59.985 40.000 0.00 0.00 0.00 3.67
362 363 5.522315 TGAGGGACCAAATGTATACCAAA 57.478 39.130 0.00 0.00 0.00 3.28
363 364 5.893500 TGAGGGACCAAATGTATACCAAAA 58.106 37.500 0.00 0.00 0.00 2.44
364 365 6.315714 TGAGGGACCAAATGTATACCAAAAA 58.684 36.000 0.00 0.00 0.00 1.94
383 384 4.731313 AAAATCTTGAGGGACCAAGTCT 57.269 40.909 0.00 0.00 42.95 3.24
384 385 5.843019 AAAATCTTGAGGGACCAAGTCTA 57.157 39.130 0.00 0.00 42.95 2.59
385 386 6.394345 AAAATCTTGAGGGACCAAGTCTAT 57.606 37.500 0.00 0.00 42.95 1.98
386 387 7.510675 AAAATCTTGAGGGACCAAGTCTATA 57.489 36.000 0.00 0.00 42.95 1.31
387 388 7.698163 AAATCTTGAGGGACCAAGTCTATAT 57.302 36.000 0.00 0.00 42.95 0.86
388 389 8.798975 AAATCTTGAGGGACCAAGTCTATATA 57.201 34.615 0.00 0.00 42.95 0.86
389 390 8.980832 AATCTTGAGGGACCAAGTCTATATAT 57.019 34.615 0.00 0.00 42.95 0.86
391 392 8.880991 TCTTGAGGGACCAAGTCTATATATAC 57.119 38.462 0.00 0.00 42.95 1.47
392 393 8.679725 TCTTGAGGGACCAAGTCTATATATACT 58.320 37.037 0.00 0.00 42.95 2.12
393 394 9.315363 CTTGAGGGACCAAGTCTATATATACTT 57.685 37.037 7.51 7.51 38.87 2.24
394 395 9.670442 TTGAGGGACCAAGTCTATATATACTTT 57.330 33.333 10.05 0.00 33.72 2.66
395 396 9.090103 TGAGGGACCAAGTCTATATATACTTTG 57.910 37.037 10.05 9.66 33.72 2.77
396 397 9.091220 GAGGGACCAAGTCTATATATACTTTGT 57.909 37.037 14.09 14.09 35.11 2.83
397 398 8.871125 AGGGACCAAGTCTATATATACTTTGTG 58.129 37.037 17.33 9.74 33.25 3.33
398 399 8.095169 GGGACCAAGTCTATATATACTTTGTGG 58.905 40.741 17.33 14.90 33.25 4.17
399 400 8.867097 GGACCAAGTCTATATATACTTTGTGGA 58.133 37.037 17.33 0.00 33.25 4.02
408 409 9.627395 CTATATATACTTTGTGGAAACTCGAGG 57.373 37.037 18.41 0.00 0.00 4.63
409 410 2.256117 ACTTTGTGGAAACTCGAGGG 57.744 50.000 18.41 0.00 0.00 4.30
410 411 1.766496 ACTTTGTGGAAACTCGAGGGA 59.234 47.619 18.41 0.00 0.00 4.20
411 412 2.143925 CTTTGTGGAAACTCGAGGGAC 58.856 52.381 18.41 6.91 0.00 4.46
412 413 0.395312 TTGTGGAAACTCGAGGGACC 59.605 55.000 18.41 15.89 0.00 4.46
413 414 0.761323 TGTGGAAACTCGAGGGACCA 60.761 55.000 18.41 18.20 0.00 4.02
414 415 0.395312 GTGGAAACTCGAGGGACCAA 59.605 55.000 21.71 9.04 0.00 3.67
415 416 1.133363 TGGAAACTCGAGGGACCAAA 58.867 50.000 18.41 0.00 0.00 3.28
416 417 1.491332 TGGAAACTCGAGGGACCAAAA 59.509 47.619 18.41 0.00 0.00 2.44
417 418 2.092321 TGGAAACTCGAGGGACCAAAAA 60.092 45.455 18.41 0.00 0.00 1.94
418 419 2.292569 GGAAACTCGAGGGACCAAAAAC 59.707 50.000 18.41 0.00 0.00 2.43
419 420 2.721425 AACTCGAGGGACCAAAAACA 57.279 45.000 18.41 0.00 0.00 2.83
420 421 2.951229 ACTCGAGGGACCAAAAACAT 57.049 45.000 18.41 0.00 0.00 2.71
421 422 4.360951 AACTCGAGGGACCAAAAACATA 57.639 40.909 18.41 0.00 0.00 2.29
422 423 3.671716 ACTCGAGGGACCAAAAACATAC 58.328 45.455 18.41 0.00 0.00 2.39
423 424 3.326880 ACTCGAGGGACCAAAAACATACT 59.673 43.478 18.41 0.00 0.00 2.12
424 425 4.202430 ACTCGAGGGACCAAAAACATACTT 60.202 41.667 18.41 0.00 0.00 2.24
425 426 4.721132 TCGAGGGACCAAAAACATACTTT 58.279 39.130 0.00 0.00 0.00 2.66
426 427 5.134661 TCGAGGGACCAAAAACATACTTTT 58.865 37.500 0.00 0.00 0.00 2.27
427 428 5.239963 TCGAGGGACCAAAAACATACTTTTC 59.760 40.000 0.00 0.00 0.00 2.29
428 429 5.240844 CGAGGGACCAAAAACATACTTTTCT 59.759 40.000 0.00 0.00 0.00 2.52
429 430 6.567891 CGAGGGACCAAAAACATACTTTTCTC 60.568 42.308 0.00 0.00 0.00 2.87
508 514 3.126000 GTCCAGAAGCATGCAACTAGAAC 59.874 47.826 21.98 12.13 0.00 3.01
512 518 2.566833 AGCATGCAACTAGAACACCA 57.433 45.000 21.98 0.00 0.00 4.17
553 559 1.209898 CGTTGCCGTCACAATGCAT 59.790 52.632 0.00 0.00 34.51 3.96
629 639 8.494347 GTGAAGATACACAGATATTTCATCAGC 58.506 37.037 0.00 0.00 40.11 4.26
638 648 1.683943 ATTTCATCAGCCCATCACCG 58.316 50.000 0.00 0.00 0.00 4.94
643 653 2.257409 ATCAGCCCATCACCGGTCAC 62.257 60.000 2.59 0.00 0.00 3.67
673 683 1.604185 CGATCGAGCCAGAGAATTCCC 60.604 57.143 10.26 0.00 0.00 3.97
743 1434 2.197577 GATCTTGCTAGTGGCGAAGAC 58.802 52.381 12.91 6.54 45.43 3.01
766 1458 3.232213 ACACACAAGAGCAGTATACGG 57.768 47.619 0.00 0.00 0.00 4.02
802 1494 5.255397 TGCCAACCCCCTATAAATATCAG 57.745 43.478 0.00 0.00 0.00 2.90
881 1574 2.761208 AGGTACTTCAGGTTCGATCCAG 59.239 50.000 14.83 6.93 27.25 3.86
886 1579 3.264450 ACTTCAGGTTCGATCCAGGAATT 59.736 43.478 14.83 8.99 0.00 2.17
905 1600 8.742777 CAGGAATTAAAAGTCATTCATCCTTCA 58.257 33.333 0.00 0.00 31.91 3.02
949 1645 9.713684 TTTGTATCTTTTCCATAATCCCATTCT 57.286 29.630 0.00 0.00 0.00 2.40
957 1653 8.469309 TTTCCATAATCCCATTCTCTCAATTC 57.531 34.615 0.00 0.00 0.00 2.17
971 1668 7.782897 TCTCTCAATTCTTAGTCTCTTTCCA 57.217 36.000 0.00 0.00 0.00 3.53
1040 1740 1.414919 TGTGTTGGTCCTACTGGTGAC 59.585 52.381 5.04 0.00 34.23 3.67
1109 1809 2.558313 GCAGCAGACAGGCGAAAC 59.442 61.111 0.00 0.00 39.27 2.78
1191 1891 0.250901 ACTGCCGAATGAGCTGGTTT 60.251 50.000 0.00 0.00 33.86 3.27
1198 1898 0.779997 AATGAGCTGGTTTGTCCCCT 59.220 50.000 0.00 0.00 34.77 4.79
1220 1920 0.817634 TCTTGCAAACCAGGTCCGTG 60.818 55.000 0.00 0.00 0.00 4.94
1231 1931 1.053424 AGGTCCGTGAAAACCTGCTA 58.947 50.000 0.00 0.00 44.26 3.49
1232 1932 1.002087 AGGTCCGTGAAAACCTGCTAG 59.998 52.381 0.00 0.00 44.26 3.42
1243 1943 5.407387 TGAAAACCTGCTAGTAAATCGTCAC 59.593 40.000 0.00 0.00 0.00 3.67
1260 1960 3.122948 CGTCACGGTTAAATGGAGAACTG 59.877 47.826 0.00 0.00 37.83 3.16
1292 1992 3.242518 TGACGAATCAAGAAGTACTGCG 58.757 45.455 0.00 0.00 0.00 5.18
1314 2027 5.221048 GCGGGGAATGGTTTATATATGATGC 60.221 44.000 0.00 0.00 0.00 3.91
1319 2032 9.553064 GGGAATGGTTTATATATGATGCTCTAG 57.447 37.037 0.00 0.00 0.00 2.43
1335 2048 8.462016 TGATGCTCTAGAAGAAATTAAAAAGGC 58.538 33.333 0.00 0.00 0.00 4.35
1336 2049 8.586879 ATGCTCTAGAAGAAATTAAAAAGGCT 57.413 30.769 0.00 0.00 0.00 4.58
1337 2050 7.820648 TGCTCTAGAAGAAATTAAAAAGGCTG 58.179 34.615 0.00 0.00 0.00 4.85
1400 2113 6.239120 GCCAGAAACATGGATGTAATTAGCAT 60.239 38.462 0.00 0.00 43.57 3.79
1401 2114 7.143340 CCAGAAACATGGATGTAATTAGCATG 58.857 38.462 0.00 0.00 43.57 4.06
1402 2115 7.201848 CCAGAAACATGGATGTAATTAGCATGT 60.202 37.037 0.00 0.00 43.57 3.21
1403 2116 8.839343 CAGAAACATGGATGTAATTAGCATGTA 58.161 33.333 0.00 0.00 40.80 2.29
1441 2154 4.158394 ACTCGCATCAATAAAAGCATGGTT 59.842 37.500 3.82 3.82 0.00 3.67
1520 2233 6.097839 ACCTTTGGACTGTATATGTATCACGT 59.902 38.462 0.00 0.00 0.00 4.49
1521 2234 7.286087 ACCTTTGGACTGTATATGTATCACGTA 59.714 37.037 0.00 0.00 0.00 3.57
1536 2249 8.570096 TGTATCACGTATACAAAGATAACTGC 57.430 34.615 12.49 0.00 45.93 4.40
1623 2336 9.522804 GTCAAAAGTAATACATGTTGGTTTTCA 57.477 29.630 2.30 0.00 0.00 2.69
1658 2371 9.970553 TTACTGGACAACTCTCTTCTACTTATA 57.029 33.333 0.00 0.00 0.00 0.98
1684 2397 1.229304 TCAGAGCTCCTGCCCTTGA 60.229 57.895 10.93 2.48 42.62 3.02
1907 2620 6.763135 TGAAAAATGATCGTATCTTCTCCTGG 59.237 38.462 0.00 0.00 0.00 4.45
1957 2674 3.459828 TCACCAATACTCTCATTCCCCA 58.540 45.455 0.00 0.00 0.00 4.96
1959 2676 3.947834 CACCAATACTCTCATTCCCCAAC 59.052 47.826 0.00 0.00 0.00 3.77
1963 2680 5.126061 CCAATACTCTCATTCCCCAACAAAG 59.874 44.000 0.00 0.00 0.00 2.77
1967 2684 5.208121 ACTCTCATTCCCCAACAAAGAAAA 58.792 37.500 0.00 0.00 0.00 2.29
1968 2685 5.302823 ACTCTCATTCCCCAACAAAGAAAAG 59.697 40.000 0.00 0.00 0.00 2.27
1975 2694 4.532521 TCCCCAACAAAGAAAAGAAAACCA 59.467 37.500 0.00 0.00 0.00 3.67
1981 2700 6.731292 ACAAAGAAAAGAAAACCATAGCCT 57.269 33.333 0.00 0.00 0.00 4.58
1984 2703 6.581171 AAGAAAAGAAAACCATAGCCTCAG 57.419 37.500 0.00 0.00 0.00 3.35
2002 2721 1.135915 CAGGACAACCTCTCATCCTCG 59.864 57.143 0.00 0.00 45.94 4.63
2010 2729 3.147595 CTCATCCTCGTCCCCGCA 61.148 66.667 0.00 0.00 0.00 5.69
2012 2731 4.899239 CATCCTCGTCCCCGCAGC 62.899 72.222 0.00 0.00 0.00 5.25
2015 2734 4.821589 CCTCGTCCCCGCAGCTTC 62.822 72.222 0.00 0.00 0.00 3.86
2026 2745 1.744741 GCAGCTTCCAGCAGTCTCC 60.745 63.158 0.00 0.00 45.56 3.71
2030 2749 1.548357 GCTTCCAGCAGTCTCCCTCA 61.548 60.000 0.00 0.00 41.89 3.86
2033 2752 2.664081 CCAGCAGTCTCCCTCACCC 61.664 68.421 0.00 0.00 0.00 4.61
2035 2754 3.775654 GCAGTCTCCCTCACCCCG 61.776 72.222 0.00 0.00 0.00 5.73
2045 2764 2.682494 TCACCCCGGACAGTAGGC 60.682 66.667 0.73 0.00 0.00 3.93
2052 2771 2.279517 GGACAGTAGGCATCGGCG 60.280 66.667 0.00 0.00 42.47 6.46
2053 2772 2.962253 GACAGTAGGCATCGGCGC 60.962 66.667 0.00 0.00 42.47 6.53
2054 2773 4.873129 ACAGTAGGCATCGGCGCG 62.873 66.667 0.00 0.00 42.47 6.86
2089 2808 0.379669 GACCATGGATCTTTGCGCTG 59.620 55.000 21.47 0.00 0.00 5.18
2100 2819 1.391157 TTTGCGCTGGCTTGGAGTTT 61.391 50.000 9.73 0.00 40.82 2.66
2116 2835 5.680619 TGGAGTTTTGCTCTAGTTTCTCAA 58.319 37.500 0.00 0.00 43.62 3.02
2147 2866 1.482182 TCCTCATGTCGTTCATCCAGG 59.518 52.381 0.00 9.50 36.04 4.45
2161 2880 4.097218 CAGGTGGTGGAGAGACGA 57.903 61.111 0.00 0.00 0.00 4.20
2172 2895 4.355437 GTGGAGAGACGACATCACAATAG 58.645 47.826 0.00 0.00 0.00 1.73
2178 2901 8.085296 GGAGAGACGACATCACAATAGAATAAT 58.915 37.037 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 5.575157 TGTAAGCATACTGGATCCCAAAAA 58.425 37.500 9.90 0.00 30.80 1.94
20 21 5.186256 TGTAAGCATACTGGATCCCAAAA 57.814 39.130 9.90 0.00 30.80 2.44
21 22 4.853468 TGTAAGCATACTGGATCCCAAA 57.147 40.909 9.90 0.00 30.80 3.28
22 23 4.717877 CATGTAAGCATACTGGATCCCAA 58.282 43.478 9.90 0.00 33.30 4.12
23 24 3.496692 GCATGTAAGCATACTGGATCCCA 60.497 47.826 9.90 0.00 33.30 4.37
24 25 3.077359 GCATGTAAGCATACTGGATCCC 58.923 50.000 9.90 0.00 33.30 3.85
25 26 3.743521 TGCATGTAAGCATACTGGATCC 58.256 45.455 4.20 4.20 40.11 3.36
45 46 0.823460 AAAGTTGGTGGCACCTTGTG 59.177 50.000 34.69 0.00 39.58 3.33
46 47 1.480545 GAAAAGTTGGTGGCACCTTGT 59.519 47.619 34.69 18.01 39.58 3.16
47 48 1.202521 GGAAAAGTTGGTGGCACCTTG 60.203 52.381 34.69 0.00 39.58 3.61
48 49 1.119684 GGAAAAGTTGGTGGCACCTT 58.880 50.000 34.69 21.57 39.58 3.50
49 50 0.261696 AGGAAAAGTTGGTGGCACCT 59.738 50.000 34.69 15.86 39.58 4.00
50 51 0.389025 CAGGAAAAGTTGGTGGCACC 59.611 55.000 29.75 29.75 39.22 5.01
51 52 0.249447 GCAGGAAAAGTTGGTGGCAC 60.249 55.000 9.70 9.70 0.00 5.01
52 53 0.396974 AGCAGGAAAAGTTGGTGGCA 60.397 50.000 0.00 0.00 0.00 4.92
53 54 0.315251 GAGCAGGAAAAGTTGGTGGC 59.685 55.000 0.00 0.00 0.00 5.01
54 55 1.986882 AGAGCAGGAAAAGTTGGTGG 58.013 50.000 0.00 0.00 0.00 4.61
55 56 4.114794 CAAAAGAGCAGGAAAAGTTGGTG 58.885 43.478 0.00 0.00 0.00 4.17
56 57 4.023291 TCAAAAGAGCAGGAAAAGTTGGT 58.977 39.130 0.00 0.00 0.00 3.67
57 58 4.142182 TGTCAAAAGAGCAGGAAAAGTTGG 60.142 41.667 0.00 0.00 0.00 3.77
58 59 4.800471 GTGTCAAAAGAGCAGGAAAAGTTG 59.200 41.667 0.00 0.00 0.00 3.16
59 60 4.706962 AGTGTCAAAAGAGCAGGAAAAGTT 59.293 37.500 0.00 0.00 0.00 2.66
60 61 4.273318 AGTGTCAAAAGAGCAGGAAAAGT 58.727 39.130 0.00 0.00 0.00 2.66
61 62 4.553547 CGAGTGTCAAAAGAGCAGGAAAAG 60.554 45.833 0.00 0.00 0.00 2.27
62 63 3.312421 CGAGTGTCAAAAGAGCAGGAAAA 59.688 43.478 0.00 0.00 0.00 2.29
63 64 2.872245 CGAGTGTCAAAAGAGCAGGAAA 59.128 45.455 0.00 0.00 0.00 3.13
64 65 2.102420 TCGAGTGTCAAAAGAGCAGGAA 59.898 45.455 0.00 0.00 0.00 3.36
65 66 1.686587 TCGAGTGTCAAAAGAGCAGGA 59.313 47.619 0.00 0.00 0.00 3.86
66 67 2.064762 CTCGAGTGTCAAAAGAGCAGG 58.935 52.381 3.62 0.00 0.00 4.85
67 68 2.064762 CCTCGAGTGTCAAAAGAGCAG 58.935 52.381 12.31 0.00 0.00 4.24
68 69 1.686587 TCCTCGAGTGTCAAAAGAGCA 59.313 47.619 12.31 0.00 0.00 4.26
69 70 2.440539 TCCTCGAGTGTCAAAAGAGC 57.559 50.000 12.31 0.00 0.00 4.09
70 71 8.879342 ATAATAATCCTCGAGTGTCAAAAGAG 57.121 34.615 12.31 0.00 0.00 2.85
71 72 9.667107 AAATAATAATCCTCGAGTGTCAAAAGA 57.333 29.630 12.31 0.00 0.00 2.52
75 76 9.443323 TCAAAAATAATAATCCTCGAGTGTCAA 57.557 29.630 12.31 0.00 0.00 3.18
76 77 9.443323 TTCAAAAATAATAATCCTCGAGTGTCA 57.557 29.630 12.31 0.00 0.00 3.58
135 136 2.158813 ACTCAAGGAGCTCGTGGAAAAA 60.159 45.455 14.24 0.00 32.04 1.94
136 137 1.416401 ACTCAAGGAGCTCGTGGAAAA 59.584 47.619 14.24 0.00 32.04 2.29
137 138 1.048601 ACTCAAGGAGCTCGTGGAAA 58.951 50.000 14.24 0.00 32.04 3.13
138 139 0.318441 CACTCAAGGAGCTCGTGGAA 59.682 55.000 14.24 0.93 32.04 3.53
139 140 0.827925 ACACTCAAGGAGCTCGTGGA 60.828 55.000 18.87 16.21 32.04 4.02
140 141 0.389166 GACACTCAAGGAGCTCGTGG 60.389 60.000 18.87 13.02 32.04 4.94
141 142 0.315251 TGACACTCAAGGAGCTCGTG 59.685 55.000 10.16 12.91 32.04 4.35
142 143 1.040646 TTGACACTCAAGGAGCTCGT 58.959 50.000 7.83 5.12 31.83 4.18
143 144 2.154854 TTTGACACTCAAGGAGCTCG 57.845 50.000 7.83 0.00 37.70 5.03
144 145 2.810852 CCTTTTGACACTCAAGGAGCTC 59.189 50.000 4.71 4.71 39.73 4.09
145 146 2.439507 TCCTTTTGACACTCAAGGAGCT 59.560 45.455 6.03 0.00 41.02 4.09
146 147 2.550180 GTCCTTTTGACACTCAAGGAGC 59.450 50.000 9.35 3.60 45.47 4.70
157 158 7.336975 CGAACAAAATTTCATGTCCTTTTGAC 58.663 34.615 23.32 17.80 44.72 3.18
158 159 6.019156 GCGAACAAAATTTCATGTCCTTTTGA 60.019 34.615 23.32 0.00 39.69 2.69
159 160 6.128729 GCGAACAAAATTTCATGTCCTTTTG 58.871 36.000 18.75 18.75 41.84 2.44
160 161 5.814705 TGCGAACAAAATTTCATGTCCTTTT 59.185 32.000 0.00 0.00 0.00 2.27
161 162 5.355596 TGCGAACAAAATTTCATGTCCTTT 58.644 33.333 0.00 0.00 0.00 3.11
162 163 4.942852 TGCGAACAAAATTTCATGTCCTT 58.057 34.783 0.00 0.00 0.00 3.36
163 164 4.582701 TGCGAACAAAATTTCATGTCCT 57.417 36.364 0.00 0.00 0.00 3.85
164 165 5.163513 AGATGCGAACAAAATTTCATGTCC 58.836 37.500 0.00 0.00 0.00 4.02
165 166 6.695292 AAGATGCGAACAAAATTTCATGTC 57.305 33.333 0.00 0.00 0.00 3.06
166 167 7.148755 GCTTAAGATGCGAACAAAATTTCATGT 60.149 33.333 6.67 0.00 0.00 3.21
167 168 7.148771 TGCTTAAGATGCGAACAAAATTTCATG 60.149 33.333 6.67 0.00 0.00 3.07
168 169 6.867816 TGCTTAAGATGCGAACAAAATTTCAT 59.132 30.769 6.67 0.00 0.00 2.57
169 170 6.212235 TGCTTAAGATGCGAACAAAATTTCA 58.788 32.000 6.67 0.00 0.00 2.69
170 171 6.689178 TGCTTAAGATGCGAACAAAATTTC 57.311 33.333 6.67 0.00 0.00 2.17
171 172 8.931385 ATATGCTTAAGATGCGAACAAAATTT 57.069 26.923 6.67 0.00 0.00 1.82
172 173 8.931385 AATATGCTTAAGATGCGAACAAAATT 57.069 26.923 6.67 0.00 0.00 1.82
173 174 7.376866 CGAATATGCTTAAGATGCGAACAAAAT 59.623 33.333 6.67 0.00 0.00 1.82
174 175 6.686679 CGAATATGCTTAAGATGCGAACAAAA 59.313 34.615 6.67 0.00 0.00 2.44
175 176 6.036626 TCGAATATGCTTAAGATGCGAACAAA 59.963 34.615 6.67 0.00 0.00 2.83
176 177 5.522097 TCGAATATGCTTAAGATGCGAACAA 59.478 36.000 6.67 0.00 0.00 2.83
177 178 5.047188 TCGAATATGCTTAAGATGCGAACA 58.953 37.500 6.67 0.00 0.00 3.18
178 179 5.366752 GTCGAATATGCTTAAGATGCGAAC 58.633 41.667 6.67 0.00 0.00 3.95
179 180 4.447724 GGTCGAATATGCTTAAGATGCGAA 59.552 41.667 6.67 0.00 0.00 4.70
180 181 3.987868 GGTCGAATATGCTTAAGATGCGA 59.012 43.478 6.67 4.12 0.00 5.10
181 182 3.123621 GGGTCGAATATGCTTAAGATGCG 59.876 47.826 6.67 1.51 0.00 4.73
182 183 3.437049 GGGGTCGAATATGCTTAAGATGC 59.563 47.826 6.67 0.00 0.00 3.91
183 184 4.641396 TGGGGTCGAATATGCTTAAGATG 58.359 43.478 6.67 0.00 0.00 2.90
184 185 4.974645 TGGGGTCGAATATGCTTAAGAT 57.025 40.909 6.67 0.00 0.00 2.40
185 186 4.764050 TTGGGGTCGAATATGCTTAAGA 57.236 40.909 6.67 0.00 0.00 2.10
186 187 5.828299 TTTTGGGGTCGAATATGCTTAAG 57.172 39.130 0.00 0.00 0.00 1.85
207 208 9.671279 AGAACCTTCAAAACAATCTGAAATTTT 57.329 25.926 0.00 0.00 31.41 1.82
208 209 9.671279 AAGAACCTTCAAAACAATCTGAAATTT 57.329 25.926 0.00 0.00 31.41 1.82
209 210 9.671279 AAAGAACCTTCAAAACAATCTGAAATT 57.329 25.926 0.00 0.00 31.41 1.82
238 239 9.801873 CCCGATGAACAGTAATTTGAAAAATAT 57.198 29.630 0.00 0.00 0.00 1.28
239 240 7.757624 GCCCGATGAACAGTAATTTGAAAAATA 59.242 33.333 0.00 0.00 0.00 1.40
240 241 6.589907 GCCCGATGAACAGTAATTTGAAAAAT 59.410 34.615 0.00 0.00 0.00 1.82
241 242 5.923684 GCCCGATGAACAGTAATTTGAAAAA 59.076 36.000 0.00 0.00 0.00 1.94
242 243 5.465935 GCCCGATGAACAGTAATTTGAAAA 58.534 37.500 0.00 0.00 0.00 2.29
243 244 4.378978 CGCCCGATGAACAGTAATTTGAAA 60.379 41.667 0.00 0.00 0.00 2.69
244 245 3.126171 CGCCCGATGAACAGTAATTTGAA 59.874 43.478 0.00 0.00 0.00 2.69
245 246 2.675844 CGCCCGATGAACAGTAATTTGA 59.324 45.455 0.00 0.00 0.00 2.69
246 247 2.223249 CCGCCCGATGAACAGTAATTTG 60.223 50.000 0.00 0.00 0.00 2.32
247 248 2.014128 CCGCCCGATGAACAGTAATTT 58.986 47.619 0.00 0.00 0.00 1.82
248 249 1.065709 ACCGCCCGATGAACAGTAATT 60.066 47.619 0.00 0.00 0.00 1.40
249 250 0.539986 ACCGCCCGATGAACAGTAAT 59.460 50.000 0.00 0.00 0.00 1.89
250 251 0.322322 AACCGCCCGATGAACAGTAA 59.678 50.000 0.00 0.00 0.00 2.24
251 252 0.322322 AAACCGCCCGATGAACAGTA 59.678 50.000 0.00 0.00 0.00 2.74
252 253 0.536460 AAAACCGCCCGATGAACAGT 60.536 50.000 0.00 0.00 0.00 3.55
253 254 0.109781 CAAAACCGCCCGATGAACAG 60.110 55.000 0.00 0.00 0.00 3.16
254 255 0.820074 ACAAAACCGCCCGATGAACA 60.820 50.000 0.00 0.00 0.00 3.18
255 256 0.386731 CACAAAACCGCCCGATGAAC 60.387 55.000 0.00 0.00 0.00 3.18
256 257 1.519751 CCACAAAACCGCCCGATGAA 61.520 55.000 0.00 0.00 0.00 2.57
257 258 1.969064 CCACAAAACCGCCCGATGA 60.969 57.895 0.00 0.00 0.00 2.92
258 259 2.566010 CCACAAAACCGCCCGATG 59.434 61.111 0.00 0.00 0.00 3.84
259 260 3.370231 GCCACAAAACCGCCCGAT 61.370 61.111 0.00 0.00 0.00 4.18
263 264 4.337060 GACCGCCACAAAACCGCC 62.337 66.667 0.00 0.00 0.00 6.13
264 265 2.615262 TTTGACCGCCACAAAACCGC 62.615 55.000 0.00 0.00 34.89 5.68
265 266 0.179134 TTTTGACCGCCACAAAACCG 60.179 50.000 0.00 0.00 40.63 4.44
266 267 3.742983 TTTTGACCGCCACAAAACC 57.257 47.368 0.00 0.00 40.63 3.27
268 269 0.179134 CGGTTTTGACCGCCACAAAA 60.179 50.000 4.94 0.00 46.76 2.44
269 270 1.433879 CGGTTTTGACCGCCACAAA 59.566 52.632 4.94 0.00 46.76 2.83
270 271 3.111939 CGGTTTTGACCGCCACAA 58.888 55.556 4.94 0.00 46.76 3.33
277 278 0.028374 CACGTTGACCGGTTTTGACC 59.972 55.000 9.42 0.00 42.24 4.02
278 279 0.590481 GCACGTTGACCGGTTTTGAC 60.590 55.000 9.42 4.49 42.24 3.18
279 280 0.745128 AGCACGTTGACCGGTTTTGA 60.745 50.000 9.42 0.00 42.24 2.69
280 281 0.316689 GAGCACGTTGACCGGTTTTG 60.317 55.000 9.42 1.52 42.24 2.44
281 282 0.745128 TGAGCACGTTGACCGGTTTT 60.745 50.000 9.42 0.00 42.24 2.43
282 283 0.745128 TTGAGCACGTTGACCGGTTT 60.745 50.000 9.42 0.00 42.24 3.27
283 284 0.745128 TTTGAGCACGTTGACCGGTT 60.745 50.000 9.42 0.00 42.24 4.44
284 285 0.745128 TTTTGAGCACGTTGACCGGT 60.745 50.000 6.92 6.92 42.24 5.28
285 286 0.591170 ATTTTGAGCACGTTGACCGG 59.409 50.000 0.00 0.00 42.24 5.28
286 287 1.531149 AGATTTTGAGCACGTTGACCG 59.469 47.619 0.00 0.00 44.03 4.79
287 288 3.746492 ACTAGATTTTGAGCACGTTGACC 59.254 43.478 0.00 0.00 0.00 4.02
288 289 4.992381 ACTAGATTTTGAGCACGTTGAC 57.008 40.909 0.00 0.00 0.00 3.18
289 290 6.147164 CCTAAACTAGATTTTGAGCACGTTGA 59.853 38.462 0.00 0.00 0.00 3.18
290 291 6.147164 TCCTAAACTAGATTTTGAGCACGTTG 59.853 38.462 0.00 0.00 0.00 4.10
291 292 6.147328 GTCCTAAACTAGATTTTGAGCACGTT 59.853 38.462 0.00 0.00 0.00 3.99
292 293 5.638234 GTCCTAAACTAGATTTTGAGCACGT 59.362 40.000 0.00 0.00 0.00 4.49
293 294 5.063564 GGTCCTAAACTAGATTTTGAGCACG 59.936 44.000 0.00 0.00 32.66 5.34
294 295 5.938125 TGGTCCTAAACTAGATTTTGAGCAC 59.062 40.000 0.00 0.00 35.32 4.40
295 296 6.121776 TGGTCCTAAACTAGATTTTGAGCA 57.878 37.500 0.00 4.53 36.65 4.26
296 297 7.175119 AGTTTGGTCCTAAACTAGATTTTGAGC 59.825 37.037 14.24 1.90 46.10 4.26
297 298 8.622948 AGTTTGGTCCTAAACTAGATTTTGAG 57.377 34.615 14.24 0.00 46.10 3.02
298 299 8.990163 AAGTTTGGTCCTAAACTAGATTTTGA 57.010 30.769 15.48 0.00 46.96 2.69
301 302 9.682465 GGATAAGTTTGGTCCTAAACTAGATTT 57.318 33.333 15.48 0.00 46.96 2.17
302 303 7.985752 CGGATAAGTTTGGTCCTAAACTAGATT 59.014 37.037 15.48 0.00 46.96 2.40
303 304 7.418712 CCGGATAAGTTTGGTCCTAAACTAGAT 60.419 40.741 15.48 12.82 46.96 1.98
304 305 6.127253 CCGGATAAGTTTGGTCCTAAACTAGA 60.127 42.308 15.48 9.92 46.96 2.43
305 306 6.047231 CCGGATAAGTTTGGTCCTAAACTAG 58.953 44.000 15.48 0.00 46.96 2.57
306 307 5.484998 ACCGGATAAGTTTGGTCCTAAACTA 59.515 40.000 9.46 8.19 46.96 2.24
308 309 4.582869 ACCGGATAAGTTTGGTCCTAAAC 58.417 43.478 9.46 8.19 40.08 2.01
309 310 4.914177 ACCGGATAAGTTTGGTCCTAAA 57.086 40.909 9.46 0.00 0.00 1.85
310 311 4.914177 AACCGGATAAGTTTGGTCCTAA 57.086 40.909 9.46 0.00 32.37 2.69
311 312 4.914177 AAACCGGATAAGTTTGGTCCTA 57.086 40.909 9.46 0.00 36.13 2.94
312 313 3.801307 AAACCGGATAAGTTTGGTCCT 57.199 42.857 9.46 0.00 36.13 3.85
313 314 3.822167 TCAAAACCGGATAAGTTTGGTCC 59.178 43.478 9.46 0.00 37.50 4.46
314 315 5.441709 TTCAAAACCGGATAAGTTTGGTC 57.558 39.130 9.46 0.00 37.50 4.02
315 316 5.361571 AGTTTCAAAACCGGATAAGTTTGGT 59.638 36.000 9.46 0.00 39.71 3.67
316 317 5.838529 AGTTTCAAAACCGGATAAGTTTGG 58.161 37.500 9.46 0.00 39.71 3.28
317 318 6.975772 TCAAGTTTCAAAACCGGATAAGTTTG 59.024 34.615 9.46 10.38 39.71 2.93
318 319 7.102847 TCAAGTTTCAAAACCGGATAAGTTT 57.897 32.000 9.46 0.00 39.71 2.66
319 320 6.238925 CCTCAAGTTTCAAAACCGGATAAGTT 60.239 38.462 9.46 0.00 39.71 2.66
320 321 5.240844 CCTCAAGTTTCAAAACCGGATAAGT 59.759 40.000 9.46 0.00 39.71 2.24
321 322 5.335661 CCCTCAAGTTTCAAAACCGGATAAG 60.336 44.000 9.46 0.00 39.71 1.73
322 323 4.521256 CCCTCAAGTTTCAAAACCGGATAA 59.479 41.667 9.46 0.00 39.71 1.75
323 324 4.076394 CCCTCAAGTTTCAAAACCGGATA 58.924 43.478 9.46 0.00 39.71 2.59
324 325 2.890945 CCCTCAAGTTTCAAAACCGGAT 59.109 45.455 9.46 0.00 39.71 4.18
325 326 2.092321 TCCCTCAAGTTTCAAAACCGGA 60.092 45.455 9.46 0.47 39.71 5.14
326 327 2.034179 GTCCCTCAAGTTTCAAAACCGG 59.966 50.000 0.00 0.00 39.71 5.28
327 328 2.034179 GGTCCCTCAAGTTTCAAAACCG 59.966 50.000 2.08 0.00 39.71 4.44
328 329 3.028130 TGGTCCCTCAAGTTTCAAAACC 58.972 45.455 2.08 0.00 39.71 3.27
329 330 4.729227 TTGGTCCCTCAAGTTTCAAAAC 57.271 40.909 0.00 0.00 39.17 2.43
330 331 5.188751 ACATTTGGTCCCTCAAGTTTCAAAA 59.811 36.000 0.00 0.00 0.00 2.44
331 332 4.714308 ACATTTGGTCCCTCAAGTTTCAAA 59.286 37.500 0.00 0.00 0.00 2.69
332 333 4.285863 ACATTTGGTCCCTCAAGTTTCAA 58.714 39.130 0.00 0.00 0.00 2.69
333 334 3.909732 ACATTTGGTCCCTCAAGTTTCA 58.090 40.909 0.00 0.00 0.00 2.69
334 335 6.095021 GGTATACATTTGGTCCCTCAAGTTTC 59.905 42.308 5.01 0.00 0.00 2.78
335 336 5.949952 GGTATACATTTGGTCCCTCAAGTTT 59.050 40.000 5.01 0.00 0.00 2.66
336 337 5.014755 TGGTATACATTTGGTCCCTCAAGTT 59.985 40.000 5.01 0.00 0.00 2.66
337 338 4.538490 TGGTATACATTTGGTCCCTCAAGT 59.462 41.667 5.01 0.00 0.00 3.16
338 339 5.110814 TGGTATACATTTGGTCCCTCAAG 57.889 43.478 5.01 0.00 0.00 3.02
339 340 5.522315 TTGGTATACATTTGGTCCCTCAA 57.478 39.130 5.01 0.00 0.00 3.02
340 341 5.522315 TTTGGTATACATTTGGTCCCTCA 57.478 39.130 5.01 0.00 0.00 3.86
341 342 6.844097 TTTTTGGTATACATTTGGTCCCTC 57.156 37.500 5.01 0.00 0.00 4.30
361 362 5.066913 AGACTTGGTCCCTCAAGATTTTT 57.933 39.130 10.99 0.00 44.98 1.94
362 363 4.731313 AGACTTGGTCCCTCAAGATTTT 57.269 40.909 10.99 0.00 44.98 1.82
363 364 7.698163 ATATAGACTTGGTCCCTCAAGATTT 57.302 36.000 10.99 0.40 44.98 2.17
364 365 8.980832 ATATATAGACTTGGTCCCTCAAGATT 57.019 34.615 10.99 2.43 44.98 2.40
365 366 9.482175 GTATATATAGACTTGGTCCCTCAAGAT 57.518 37.037 10.99 2.96 44.98 2.40
366 367 8.679725 AGTATATATAGACTTGGTCCCTCAAGA 58.320 37.037 4.14 0.00 44.98 3.02
367 368 8.887264 AGTATATATAGACTTGGTCCCTCAAG 57.113 38.462 4.14 3.39 46.86 3.02
368 369 9.670442 AAAGTATATATAGACTTGGTCCCTCAA 57.330 33.333 20.50 0.00 37.75 3.02
369 370 9.090103 CAAAGTATATATAGACTTGGTCCCTCA 57.910 37.037 20.50 0.00 37.75 3.86
370 371 9.091220 ACAAAGTATATATAGACTTGGTCCCTC 57.909 37.037 20.07 0.00 37.13 4.30
371 372 8.871125 CACAAAGTATATATAGACTTGGTCCCT 58.129 37.037 22.09 5.86 39.07 4.20
372 373 8.095169 CCACAAAGTATATATAGACTTGGTCCC 58.905 40.741 22.09 0.00 39.07 4.46
373 374 8.867097 TCCACAAAGTATATATAGACTTGGTCC 58.133 37.037 22.09 0.00 39.07 4.46
382 383 9.627395 CCTCGAGTTTCCACAAAGTATATATAG 57.373 37.037 12.31 0.00 0.00 1.31
383 384 8.582437 CCCTCGAGTTTCCACAAAGTATATATA 58.418 37.037 12.31 0.00 0.00 0.86
384 385 7.289317 TCCCTCGAGTTTCCACAAAGTATATAT 59.711 37.037 12.31 0.00 0.00 0.86
385 386 6.608405 TCCCTCGAGTTTCCACAAAGTATATA 59.392 38.462 12.31 0.00 0.00 0.86
386 387 5.424252 TCCCTCGAGTTTCCACAAAGTATAT 59.576 40.000 12.31 0.00 0.00 0.86
387 388 4.773674 TCCCTCGAGTTTCCACAAAGTATA 59.226 41.667 12.31 0.00 0.00 1.47
388 389 3.581332 TCCCTCGAGTTTCCACAAAGTAT 59.419 43.478 12.31 0.00 0.00 2.12
389 390 2.967201 TCCCTCGAGTTTCCACAAAGTA 59.033 45.455 12.31 0.00 0.00 2.24
390 391 1.766496 TCCCTCGAGTTTCCACAAAGT 59.234 47.619 12.31 0.00 0.00 2.66
391 392 2.143925 GTCCCTCGAGTTTCCACAAAG 58.856 52.381 12.31 0.00 0.00 2.77
392 393 1.202722 GGTCCCTCGAGTTTCCACAAA 60.203 52.381 12.31 0.00 0.00 2.83
393 394 0.395312 GGTCCCTCGAGTTTCCACAA 59.605 55.000 12.31 0.00 0.00 3.33
394 395 0.761323 TGGTCCCTCGAGTTTCCACA 60.761 55.000 12.31 0.00 0.00 4.17
395 396 0.395312 TTGGTCCCTCGAGTTTCCAC 59.605 55.000 12.31 0.07 0.00 4.02
396 397 1.133363 TTTGGTCCCTCGAGTTTCCA 58.867 50.000 12.31 12.87 0.00 3.53
397 398 2.265589 TTTTGGTCCCTCGAGTTTCC 57.734 50.000 12.31 10.44 0.00 3.13
398 399 2.946990 TGTTTTTGGTCCCTCGAGTTTC 59.053 45.455 12.31 0.64 0.00 2.78
399 400 3.007473 TGTTTTTGGTCCCTCGAGTTT 57.993 42.857 12.31 0.00 0.00 2.66
400 401 2.721425 TGTTTTTGGTCCCTCGAGTT 57.279 45.000 12.31 0.00 0.00 3.01
401 402 2.951229 ATGTTTTTGGTCCCTCGAGT 57.049 45.000 12.31 0.00 0.00 4.18
402 403 3.939066 AGTATGTTTTTGGTCCCTCGAG 58.061 45.455 5.13 5.13 0.00 4.04
403 404 4.360951 AAGTATGTTTTTGGTCCCTCGA 57.639 40.909 0.00 0.00 0.00 4.04
404 405 5.240844 AGAAAAGTATGTTTTTGGTCCCTCG 59.759 40.000 0.00 0.00 0.00 4.63
405 406 6.490381 AGAGAAAAGTATGTTTTTGGTCCCTC 59.510 38.462 0.00 0.00 0.00 4.30
406 407 6.373759 AGAGAAAAGTATGTTTTTGGTCCCT 58.626 36.000 0.00 0.00 0.00 4.20
407 408 6.650427 AGAGAAAAGTATGTTTTTGGTCCC 57.350 37.500 0.00 0.00 0.00 4.46
493 494 2.566833 TGGTGTTCTAGTTGCATGCT 57.433 45.000 20.33 0.40 0.00 3.79
508 514 7.119992 AGCATTATCTCGAGTACTACTATGGTG 59.880 40.741 13.13 2.05 0.00 4.17
563 569 6.321821 ACATAGCAAATTGTAGTTAGGGGA 57.678 37.500 0.00 0.00 0.00 4.81
629 639 0.391661 CAGAAGTGACCGGTGATGGG 60.392 60.000 14.63 0.00 0.00 4.00
638 648 1.590238 CGATCGATTGCAGAAGTGACC 59.410 52.381 10.26 0.00 0.00 4.02
643 653 0.857935 GGCTCGATCGATTGCAGAAG 59.142 55.000 25.03 11.08 0.00 2.85
673 683 6.194508 CGACAATATGAAGTGGTTTATTTGCG 59.805 38.462 0.00 0.00 0.00 4.85
743 1434 4.352039 CGTATACTGCTCTTGTGTGTAGG 58.648 47.826 0.56 0.00 0.00 3.18
766 1458 2.163613 GGTTGGCAACTTGGTATACAGC 59.836 50.000 27.77 4.84 37.61 4.40
802 1494 1.808411 TTCTCAATGCGGTGGAGTTC 58.192 50.000 0.00 0.00 0.00 3.01
854 1546 2.480419 CGAACCTGAAGTACCTTGCTTG 59.520 50.000 0.00 0.00 0.00 4.01
881 1574 9.927668 TTTGAAGGATGAATGACTTTTAATTCC 57.072 29.630 0.00 0.00 32.81 3.01
886 1579 8.960591 GGAGATTTGAAGGATGAATGACTTTTA 58.039 33.333 0.00 0.00 0.00 1.52
949 1645 6.868864 CGTTGGAAAGAGACTAAGAATTGAGA 59.131 38.462 0.00 0.00 0.00 3.27
957 1653 3.914312 TCTGCGTTGGAAAGAGACTAAG 58.086 45.455 0.00 0.00 0.00 2.18
971 1668 2.268076 GGTGGTGCCAATCTGCGTT 61.268 57.895 0.00 0.00 37.17 4.84
1109 1809 2.178521 CCTCCGTCTTCGTCACCG 59.821 66.667 0.00 0.00 35.01 4.94
1191 1891 1.478654 GGTTTGCAAGAAGAGGGGACA 60.479 52.381 0.00 0.00 0.00 4.02
1198 1898 1.813862 CGGACCTGGTTTGCAAGAAGA 60.814 52.381 0.00 0.00 0.00 2.87
1220 1920 5.444218 CGTGACGATTTACTAGCAGGTTTTC 60.444 44.000 0.00 0.00 0.00 2.29
1231 1931 5.481105 TCCATTTAACCGTGACGATTTACT 58.519 37.500 6.54 0.00 0.00 2.24
1232 1932 5.577945 TCTCCATTTAACCGTGACGATTTAC 59.422 40.000 6.54 0.00 0.00 2.01
1243 1943 4.062293 TCACACAGTTCTCCATTTAACCG 58.938 43.478 0.00 0.00 0.00 4.44
1260 1960 4.213270 TCTTGATTCGTCATTGGTTCACAC 59.787 41.667 0.00 0.00 0.00 3.82
1292 1992 7.349598 AGAGCATCATATATAAACCATTCCCC 58.650 38.462 0.00 0.00 37.82 4.81
1328 2041 9.250246 TGCTATAACCTAAAATACAGCCTTTTT 57.750 29.630 0.00 0.00 0.00 1.94
1329 2042 8.817092 TGCTATAACCTAAAATACAGCCTTTT 57.183 30.769 0.00 0.00 0.00 2.27
1330 2043 8.053355 ACTGCTATAACCTAAAATACAGCCTTT 58.947 33.333 0.00 0.00 0.00 3.11
1332 2045 7.138054 ACTGCTATAACCTAAAATACAGCCT 57.862 36.000 0.00 0.00 0.00 4.58
1418 2131 3.696051 ACCATGCTTTTATTGATGCGAGT 59.304 39.130 0.00 0.00 0.00 4.18
1514 2227 6.578944 TGGCAGTTATCTTTGTATACGTGAT 58.421 36.000 0.00 4.66 0.00 3.06
1516 2229 6.656314 TTGGCAGTTATCTTTGTATACGTG 57.344 37.500 0.00 0.00 0.00 4.49
1518 2231 7.915508 TGAATTGGCAGTTATCTTTGTATACG 58.084 34.615 0.00 0.00 0.00 3.06
1521 2234 9.632638 ACTATGAATTGGCAGTTATCTTTGTAT 57.367 29.630 0.00 0.00 0.00 2.29
1623 2336 7.690256 AGAGAGTTGTCCAGTAAATTATTGGT 58.310 34.615 13.19 0.00 36.94 3.67
1728 2441 2.799371 CGAGGAGTGCGGTAGACC 59.201 66.667 0.00 0.00 0.00 3.85
1735 2448 2.811317 GAACCTGCGAGGAGTGCG 60.811 66.667 8.91 0.00 37.67 5.34
1776 2489 8.245195 AGTACCACAATTTTAACCAGTGATTT 57.755 30.769 0.00 0.00 32.14 2.17
1813 2526 8.948631 TTGTTACATTTTGGAAATGCACTTAA 57.051 26.923 12.04 2.94 0.00 1.85
1878 2591 8.669243 GGAGAAGATACGATCATTTTTCAGTTT 58.331 33.333 0.00 0.00 0.00 2.66
1879 2592 8.043710 AGGAGAAGATACGATCATTTTTCAGTT 58.956 33.333 0.00 0.00 0.00 3.16
1882 2595 6.763135 CCAGGAGAAGATACGATCATTTTTCA 59.237 38.462 0.00 0.00 0.00 2.69
1888 2601 6.678568 AATTCCAGGAGAAGATACGATCAT 57.321 37.500 0.00 0.00 38.07 2.45
1894 2607 5.882557 TGCAAGAAATTCCAGGAGAAGATAC 59.117 40.000 0.00 0.00 38.07 2.24
1944 2661 4.453480 TTCTTTGTTGGGGAATGAGAGT 57.547 40.909 0.00 0.00 0.00 3.24
1957 2674 7.124573 AGGCTATGGTTTTCTTTTCTTTGTT 57.875 32.000 0.00 0.00 0.00 2.83
1959 2676 6.748132 TGAGGCTATGGTTTTCTTTTCTTTG 58.252 36.000 0.00 0.00 0.00 2.77
1963 2680 5.010282 TCCTGAGGCTATGGTTTTCTTTTC 58.990 41.667 0.00 0.00 0.00 2.29
1967 2684 2.912956 TGTCCTGAGGCTATGGTTTTCT 59.087 45.455 0.00 0.00 0.00 2.52
1968 2685 3.350219 TGTCCTGAGGCTATGGTTTTC 57.650 47.619 0.00 0.00 0.00 2.29
1975 2694 2.292521 TGAGAGGTTGTCCTGAGGCTAT 60.293 50.000 0.00 0.00 45.24 2.97
1981 2700 2.461695 GAGGATGAGAGGTTGTCCTGA 58.538 52.381 0.00 0.00 45.24 3.86
1984 2703 1.135333 GACGAGGATGAGAGGTTGTCC 59.865 57.143 0.00 0.00 0.00 4.02
2012 2731 0.248843 GTGAGGGAGACTGCTGGAAG 59.751 60.000 0.00 0.00 0.00 3.46
2015 2734 2.664081 GGGTGAGGGAGACTGCTGG 61.664 68.421 0.00 0.00 0.00 4.85
2026 2745 2.058595 CCTACTGTCCGGGGTGAGG 61.059 68.421 0.00 0.00 0.00 3.86
2030 2749 2.040606 ATGCCTACTGTCCGGGGT 59.959 61.111 0.00 0.80 0.00 4.95
2033 2752 2.417516 CCGATGCCTACTGTCCGG 59.582 66.667 0.00 0.00 0.00 5.14
2035 2754 2.279517 CGCCGATGCCTACTGTCC 60.280 66.667 0.00 0.00 0.00 4.02
2054 2773 4.880426 TCTCCCCCATCTCCCGGC 62.880 72.222 0.00 0.00 0.00 6.13
2063 2782 0.046242 AAGATCCATGGTCTCCCCCA 59.954 55.000 12.58 0.00 39.27 4.96
2135 2854 0.834261 TCCACCACCTGGATGAACGA 60.834 55.000 0.00 0.00 44.99 3.85
2147 2866 0.888619 TGATGTCGTCTCTCCACCAC 59.111 55.000 0.00 0.00 0.00 4.16
2153 2872 9.469807 AATTATTCTATTGTGATGTCGTCTCTC 57.530 33.333 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.