Multiple sequence alignment - TraesCS2B01G061900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G061900 chr2B 100.000 3759 0 0 1 3759 29552664 29556422 0.000000e+00 6942
1 TraesCS2B01G061900 chr2B 78.412 718 100 38 2368 3071 29263988 29264664 2.090000e-112 416
2 TraesCS2B01G061900 chr2B 78.412 718 100 38 2368 3071 29319225 29319901 2.090000e-112 416
3 TraesCS2B01G061900 chr2B 78.273 718 102 35 2368 3071 29350343 29351020 2.700000e-111 412
4 TraesCS2B01G061900 chr2D 94.742 3157 122 17 1 3122 17635179 17632032 0.000000e+00 4870
5 TraesCS2B01G061900 chr2D 94.541 3169 116 16 1 3122 17609440 17606282 0.000000e+00 4841
6 TraesCS2B01G061900 chr2D 95.638 619 26 1 3142 3759 17606173 17605555 0.000000e+00 992
7 TraesCS2B01G061900 chr2D 95.638 619 25 2 3142 3759 17631923 17631306 0.000000e+00 992
8 TraesCS2B01G061900 chr2D 81.761 159 17 8 1322 1473 274856568 274856415 5.100000e-24 122
9 TraesCS2B01G061900 chr2D 82.927 123 13 5 1361 1476 234759880 234759759 1.850000e-18 104
10 TraesCS2B01G061900 chr2A 95.439 2960 103 13 182 3122 19031445 19028499 0.000000e+00 4689
11 TraesCS2B01G061900 chr2A 95.153 619 29 1 3142 3759 19028390 19027772 0.000000e+00 976
12 TraesCS2B01G061900 chr2A 93.407 182 10 1 1 182 19031670 19031491 6.190000e-68 268
13 TraesCS2B01G061900 chr5B 77.987 318 57 8 1783 2090 705027056 705027370 1.780000e-43 187
14 TraesCS2B01G061900 chr5B 76.101 318 63 7 1784 2090 292760217 292759902 1.810000e-33 154
15 TraesCS2B01G061900 chr6D 84.516 155 15 4 1322 1469 392273074 392273226 1.090000e-30 145
16 TraesCS2B01G061900 chr4B 75.380 329 63 14 1783 2098 487658496 487658819 3.910000e-30 143
17 TraesCS2B01G061900 chr5A 75.556 315 61 9 1786 2088 6564562 6564252 1.410000e-29 141
18 TraesCS2B01G061900 chr5A 83.226 155 17 6 1322 1469 277726088 277725936 2.360000e-27 134
19 TraesCS2B01G061900 chr3D 83.125 160 17 7 1321 1473 609076898 609076742 1.820000e-28 137
20 TraesCS2B01G061900 chr4A 81.935 155 24 4 1800 1952 722073532 722073684 1.100000e-25 128
21 TraesCS2B01G061900 chr4A 81.935 155 24 4 1800 1952 722090125 722090277 1.100000e-25 128
22 TraesCS2B01G061900 chr6B 83.333 138 14 4 1341 1471 277616169 277616304 6.600000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G061900 chr2B 29552664 29556422 3758 False 6942.000000 6942 100.000000 1 3759 1 chr2B.!!$F4 3758
1 TraesCS2B01G061900 chr2B 29263988 29264664 676 False 416.000000 416 78.412000 2368 3071 1 chr2B.!!$F1 703
2 TraesCS2B01G061900 chr2B 29319225 29319901 676 False 416.000000 416 78.412000 2368 3071 1 chr2B.!!$F2 703
3 TraesCS2B01G061900 chr2B 29350343 29351020 677 False 412.000000 412 78.273000 2368 3071 1 chr2B.!!$F3 703
4 TraesCS2B01G061900 chr2D 17631306 17635179 3873 True 2931.000000 4870 95.190000 1 3759 2 chr2D.!!$R4 3758
5 TraesCS2B01G061900 chr2D 17605555 17609440 3885 True 2916.500000 4841 95.089500 1 3759 2 chr2D.!!$R3 3758
6 TraesCS2B01G061900 chr2A 19027772 19031670 3898 True 1977.666667 4689 94.666333 1 3759 3 chr2A.!!$R1 3758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.687098 CCATTGCATTGGCCCCTACA 60.687 55.0 14.36 0.00 40.13 2.74 F
880 946 0.958091 TGTAAAAGTTGCGCATGCCT 59.042 45.0 12.75 4.71 41.78 4.75 F
2047 2132 0.321564 CCGAAGTCATGCCACAGGAA 60.322 55.0 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2126 0.461961 GAGCTCGGCTACATTCCTGT 59.538 55.0 0.0 0.0 39.88 4.00 R
2725 2814 1.212375 CCTGGTGGGTGTGGATGATA 58.788 55.0 0.0 0.0 0.00 2.15 R
3337 3535 0.393402 TCAGCACCACATGAGCATCC 60.393 55.0 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.566545 AATTAATTGATGCGGCGAATCA 57.433 36.364 26.20 26.20 32.24 2.57
96 97 1.347243 ATTCCCATTGCATTGGCCCC 61.347 55.000 20.09 0.00 40.13 5.80
100 101 0.687098 CCATTGCATTGGCCCCTACA 60.687 55.000 14.36 0.00 40.13 2.74
101 102 1.193323 CATTGCATTGGCCCCTACAA 58.807 50.000 0.00 0.00 40.13 2.41
143 144 6.969828 AGACGAGCCTAATAAACTGAAAAG 57.030 37.500 0.00 0.00 0.00 2.27
144 145 5.875359 AGACGAGCCTAATAAACTGAAAAGG 59.125 40.000 0.00 0.00 0.00 3.11
155 156 1.275573 ACTGAAAAGGCGAGGGAGTAC 59.724 52.381 0.00 0.00 0.00 2.73
201 266 4.383552 GCAAGAGAGAGAGAGAGAGAGAGT 60.384 50.000 0.00 0.00 0.00 3.24
202 267 5.355596 CAAGAGAGAGAGAGAGAGAGAGTC 58.644 50.000 0.00 0.00 0.00 3.36
205 270 4.357325 AGAGAGAGAGAGAGAGAGTCAGT 58.643 47.826 0.00 0.00 0.00 3.41
206 271 4.404073 AGAGAGAGAGAGAGAGAGTCAGTC 59.596 50.000 0.00 0.00 0.00 3.51
207 272 4.357325 AGAGAGAGAGAGAGAGTCAGTCT 58.643 47.826 0.00 0.00 38.71 3.24
397 462 6.655003 AGGTCTTGGTATACAATTGTGTGAAG 59.345 38.462 21.42 16.21 38.82 3.02
408 473 7.606858 ACAATTGTGTGAAGATCTATGACTG 57.393 36.000 11.07 0.00 36.31 3.51
413 478 5.896106 TGTGTGAAGATCTATGACTGAGGAT 59.104 40.000 0.00 0.00 0.00 3.24
416 481 6.781507 TGTGAAGATCTATGACTGAGGATGAT 59.218 38.462 0.00 0.00 0.00 2.45
531 597 9.877178 TGTTCAATACAACAACAAAACCTTTAT 57.123 25.926 0.00 0.00 33.21 1.40
552 618 9.393249 CTTTATCTTTTGAGTGACGCAAAATAA 57.607 29.630 23.53 17.73 40.87 1.40
575 641 4.711355 AGTGCATATAGGTGTGCCAAAAAT 59.289 37.500 0.00 0.00 41.28 1.82
760 826 2.972625 TCTTCGGTAAGAGCACCATTG 58.027 47.619 0.00 0.00 36.80 2.82
805 871 4.996758 GCCACAAATTATGCTTTCCACTTT 59.003 37.500 0.00 0.00 0.00 2.66
879 945 1.655099 CATGTAAAAGTTGCGCATGCC 59.345 47.619 12.75 5.63 41.78 4.40
880 946 0.958091 TGTAAAAGTTGCGCATGCCT 59.042 45.000 12.75 4.71 41.78 4.75
979 1045 3.664025 GCACGTTAGTTGTTTTGAGCATC 59.336 43.478 0.00 0.00 0.00 3.91
980 1046 3.900116 CACGTTAGTTGTTTTGAGCATCG 59.100 43.478 0.00 0.00 38.61 3.84
1075 1141 6.941857 TGCATGTTCTCTATAAAGTGGTGTA 58.058 36.000 0.00 0.00 0.00 2.90
1167 1233 5.125100 TCTGATTGTCAAAACCATTCAGC 57.875 39.130 6.70 0.00 38.91 4.26
1225 1299 1.547820 ACATGTGTGCACACCAAAACA 59.452 42.857 39.34 24.46 45.88 2.83
1334 1408 6.890293 ACAATGTATTCTACTCCCTCCTTTC 58.110 40.000 0.00 0.00 0.00 2.62
1549 1625 5.237344 CCACTAGCACCTTATGTCAAATAGC 59.763 44.000 0.00 0.00 0.00 2.97
1579 1655 6.719370 ACAGGTTAAAAATGCTTGATCTACCA 59.281 34.615 0.00 0.00 0.00 3.25
1686 1762 5.847304 TCTTATCGGATCCTTTGTGAGATG 58.153 41.667 10.75 0.00 0.00 2.90
1688 1764 2.466846 TCGGATCCTTTGTGAGATGGA 58.533 47.619 10.75 0.00 0.00 3.41
1701 1777 8.408043 TTTGTGAGATGGATTTCACTTGTTAT 57.592 30.769 10.63 0.00 43.15 1.89
1759 1835 9.553064 CTAGGTGCTAGATCAGAACAAAATATT 57.447 33.333 0.00 0.00 36.26 1.28
1814 1890 7.666623 AGTTGTCCCAAATATTTTGTACAAGG 58.333 34.615 8.56 4.70 29.80 3.61
1879 1955 4.096984 GGCATGGAGTCTTGTTCAAATAGG 59.903 45.833 0.00 0.00 0.00 2.57
1905 1981 9.523168 GACACTTGTATCCTAGACCTCTTATAT 57.477 37.037 0.00 0.00 0.00 0.86
1912 1990 9.333724 GTATCCTAGACCTCTTATATAGTGAGC 57.666 40.741 0.00 0.00 0.00 4.26
2041 2126 2.359850 GCACCCGAAGTCATGCCA 60.360 61.111 0.00 0.00 31.71 4.92
2047 2132 0.321564 CCGAAGTCATGCCACAGGAA 60.322 55.000 0.00 0.00 0.00 3.36
2048 2133 1.679944 CCGAAGTCATGCCACAGGAAT 60.680 52.381 0.00 0.00 0.00 3.01
2081 2169 5.066505 GCTCGGTGATCCTCATTAACAAATT 59.933 40.000 0.00 0.00 0.00 1.82
2101 2189 3.971245 TTTGGTGTCTTTGCTTGGTTT 57.029 38.095 0.00 0.00 0.00 3.27
2106 2194 2.860136 GTGTCTTTGCTTGGTTTTCAGC 59.140 45.455 0.00 0.00 0.00 4.26
2217 2305 3.023949 ATCCGCCTGCACTCCTGTC 62.024 63.158 0.00 0.00 0.00 3.51
2222 2310 1.028868 GCCTGCACTCCTGTCAATCC 61.029 60.000 0.00 0.00 0.00 3.01
2223 2311 0.393537 CCTGCACTCCTGTCAATCCC 60.394 60.000 0.00 0.00 0.00 3.85
2388 2476 9.322773 TCTCATTGAATTCTAGCTTCATTACAG 57.677 33.333 7.05 5.61 32.94 2.74
2587 2675 7.051000 AGCAGAAAGTATCCTTTACTGGAATC 58.949 38.462 10.15 0.00 40.98 2.52
2725 2814 2.193127 TGGGATCAGTTCCGTGGTATT 58.807 47.619 0.00 0.00 46.52 1.89
2853 2943 5.880332 GGCAATTTCTACACTAAGATGTGGA 59.120 40.000 0.00 0.00 41.84 4.02
3143 3326 2.287977 TCCAAGACGAAGGAGAGTGA 57.712 50.000 0.00 0.00 0.00 3.41
3144 3327 1.887198 TCCAAGACGAAGGAGAGTGAC 59.113 52.381 0.00 0.00 0.00 3.67
3145 3328 1.067495 CCAAGACGAAGGAGAGTGACC 60.067 57.143 0.00 0.00 0.00 4.02
3146 3329 1.613925 CAAGACGAAGGAGAGTGACCA 59.386 52.381 0.00 0.00 0.00 4.02
3147 3330 2.223803 AGACGAAGGAGAGTGACCAT 57.776 50.000 0.00 0.00 0.00 3.55
3148 3331 1.821753 AGACGAAGGAGAGTGACCATG 59.178 52.381 0.00 0.00 0.00 3.66
3181 3378 3.608474 GCACGACCAACCACAAATTAGAC 60.608 47.826 0.00 0.00 0.00 2.59
3249 3447 7.379098 AGTCTGTTAGCCTAAAAATTGTAGC 57.621 36.000 0.00 0.00 0.00 3.58
3285 3483 3.249189 GGTGACAGCAGGGGGTCA 61.249 66.667 0.00 0.00 41.44 4.02
3316 3514 4.653801 TCCTGGTGCACAGCTATTATTAGA 59.346 41.667 20.43 1.44 46.14 2.10
3349 3547 0.034767 AGGTGTGGGATGCTCATGTG 60.035 55.000 0.00 0.00 0.00 3.21
3385 3583 1.249407 TTGCTTGCATGTCATCAGCA 58.751 45.000 2.92 2.92 36.32 4.41
3391 3589 1.135228 TGCATGTCATCAGCATTGTGC 60.135 47.619 0.00 0.00 45.46 4.57
3411 3609 1.644786 GGTCGTGCACATACAAGCCC 61.645 60.000 18.64 0.00 0.00 5.19
3422 3620 5.524646 GCACATACAAGCCCGTTATTAGTAA 59.475 40.000 0.00 0.00 0.00 2.24
3428 3626 4.412796 AGCCCGTTATTAGTAAGTTCCC 57.587 45.455 0.00 0.00 0.00 3.97
3445 3643 7.560796 AAGTTCCCTATATTGATCCGAGATT 57.439 36.000 0.00 0.00 0.00 2.40
3470 3668 3.490249 CCTGTGGTGCTGAATTATGCATG 60.490 47.826 10.16 0.00 41.45 4.06
3581 3779 7.110155 CCAGATAAGTGTACATTTTACAGGGT 58.890 38.462 9.05 0.00 0.00 4.34
3589 3787 5.530171 TGTACATTTTACAGGGTGCGTTTTA 59.470 36.000 0.00 0.00 0.00 1.52
3642 3840 1.673009 CAAGCTTTTCCCGGCCGTA 60.673 57.895 26.12 9.16 0.00 4.02
3692 3890 2.643933 GGTAAGTACCGTTTCGCTCT 57.356 50.000 0.00 0.00 36.50 4.09
3699 3897 1.082104 CCGTTTCGCTCTTGTTGCC 60.082 57.895 0.00 0.00 0.00 4.52
3738 3936 8.776470 TGTAAACATGCATATGATATCAGTGTG 58.224 33.333 11.78 10.30 37.73 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.872585 TTTTCTCCCAAAATGGAAGCATAT 57.127 33.333 0.00 0.00 40.96 1.78
143 144 1.761198 AGTAAATGGTACTCCCTCGCC 59.239 52.381 0.00 0.00 0.00 5.54
144 145 2.694109 AGAGTAAATGGTACTCCCTCGC 59.306 50.000 9.37 0.00 43.61 5.03
155 156 5.392380 GCATCCAGTGACAAAGAGTAAATGG 60.392 44.000 0.00 0.00 46.34 3.16
201 266 9.639563 AAATACATAATCTCTCTCTCAGACTGA 57.360 33.333 4.78 4.78 0.00 3.41
234 299 6.454795 TGCAAATTCAACCTACCAATCTTTC 58.545 36.000 0.00 0.00 0.00 2.62
236 301 6.400568 CATGCAAATTCAACCTACCAATCTT 58.599 36.000 0.00 0.00 0.00 2.40
374 439 7.667043 TCTTCACACAATTGTATACCAAGAC 57.333 36.000 11.53 0.00 36.25 3.01
376 441 8.498054 AGATCTTCACACAATTGTATACCAAG 57.502 34.615 11.53 9.19 36.25 3.61
382 447 9.322773 CAGTCATAGATCTTCACACAATTGTAT 57.677 33.333 11.53 0.00 33.30 2.29
389 454 5.264395 TCCTCAGTCATAGATCTTCACACA 58.736 41.667 0.00 0.00 0.00 3.72
407 472 8.597167 CCAGGTTCTTGTAATATATCATCCTCA 58.403 37.037 0.00 0.00 0.00 3.86
408 473 8.816894 TCCAGGTTCTTGTAATATATCATCCTC 58.183 37.037 0.00 0.00 0.00 3.71
531 597 6.198687 CACTTATTTTGCGTCACTCAAAAGA 58.801 36.000 11.17 4.18 43.79 2.52
552 618 3.364460 TTTGGCACACCTATATGCACT 57.636 42.857 0.00 0.00 43.93 4.40
575 641 4.859691 AGGGATGGGGAAATGATCATCATA 59.140 41.667 9.06 0.00 35.76 2.15
652 718 6.239008 CCCCGCACACATCTATATTTGAAAAT 60.239 38.462 0.00 0.00 0.00 1.82
760 826 5.519927 GGCCAATATAACAACAAAGTGATGC 59.480 40.000 0.00 0.00 0.00 3.91
761 827 6.531240 GTGGCCAATATAACAACAAAGTGATG 59.469 38.462 7.24 0.00 0.00 3.07
805 871 3.072330 TCCAACATGTCCAACTGAAGCTA 59.928 43.478 0.00 0.00 0.00 3.32
879 945 7.120432 TCTCTCATATTCGATAGTGGATGTCAG 59.880 40.741 0.00 0.00 37.40 3.51
880 946 6.942576 TCTCTCATATTCGATAGTGGATGTCA 59.057 38.462 0.00 0.00 37.40 3.58
980 1046 4.365051 CATCTCCCTGATGGCAAGTATGC 61.365 52.174 0.00 0.00 46.55 3.14
1029 1095 7.568349 TGCATCTATATGGAATATGGGAAGAC 58.432 38.462 0.00 0.00 40.40 3.01
1031 1097 7.997223 ACATGCATCTATATGGAATATGGGAAG 59.003 37.037 0.00 0.00 40.40 3.46
1167 1233 3.807622 ACCGGCAACATAATTATGTCTCG 59.192 43.478 27.07 25.83 45.55 4.04
1357 1431 8.144478 TCTATTTACATCCGATCCAGAAAAGAG 58.856 37.037 0.00 0.00 0.00 2.85
1359 1433 7.710907 TGTCTATTTACATCCGATCCAGAAAAG 59.289 37.037 0.00 0.00 0.00 2.27
1518 1594 6.785466 TGACATAAGGTGCTAGTGGGAATATA 59.215 38.462 0.00 0.00 0.00 0.86
1519 1595 5.606749 TGACATAAGGTGCTAGTGGGAATAT 59.393 40.000 0.00 0.00 0.00 1.28
1549 1625 5.830912 TCAAGCATTTTTAACCTGTGACAG 58.169 37.500 5.42 5.42 0.00 3.51
1579 1655 8.574251 TGTTGTGCTACATATTACTCCAAAAT 57.426 30.769 0.00 0.00 0.00 1.82
1626 1702 1.678724 GGGCATGTTGGTTGGCAAT 59.321 52.632 1.92 0.00 41.14 3.56
1627 1703 2.515071 GGGGCATGTTGGTTGGCAA 61.515 57.895 0.00 0.00 41.14 4.52
1628 1704 2.921972 GGGGCATGTTGGTTGGCA 60.922 61.111 0.00 0.00 41.14 4.92
1686 1762 5.885912 TCTAGGGCAATAACAAGTGAAATCC 59.114 40.000 0.00 0.00 0.00 3.01
1688 1764 7.775053 TTTCTAGGGCAATAACAAGTGAAAT 57.225 32.000 0.00 0.00 0.00 2.17
1701 1777 9.528489 AAAACTTAGACATATTTTCTAGGGCAA 57.472 29.630 0.00 0.00 29.12 4.52
1814 1890 5.488341 ACTCCATCACCAACTGTAACATAC 58.512 41.667 0.00 0.00 0.00 2.39
1879 1955 7.826918 ATAAGAGGTCTAGGATACAAGTGTC 57.173 40.000 0.00 0.00 41.41 3.67
1905 1981 3.254903 ACATTGTGTGTCTACGCTCACTA 59.745 43.478 0.00 0.00 35.77 2.74
1912 1990 6.410845 GCATATGTTACATTGTGTGTCTACG 58.589 40.000 2.23 0.00 42.29 3.51
1948 2026 1.302033 CTCCCCCTATGCGCATGTC 60.302 63.158 32.48 0.00 0.00 3.06
2041 2126 0.461961 GAGCTCGGCTACATTCCTGT 59.538 55.000 0.00 0.00 39.88 4.00
2081 2169 3.971245 AAACCAAGCAAAGACACCAAA 57.029 38.095 0.00 0.00 0.00 3.28
2101 2189 2.481969 GGCACATAGTCGATCTGCTGAA 60.482 50.000 0.00 0.00 0.00 3.02
2106 2194 1.335415 CCGAGGCACATAGTCGATCTG 60.335 57.143 0.00 0.00 35.70 2.90
2546 2634 1.465387 CTGCTCTGCTTTCAGCTCTTG 59.535 52.381 0.00 0.00 42.97 3.02
2725 2814 1.212375 CCTGGTGGGTGTGGATGATA 58.788 55.000 0.00 0.00 0.00 2.15
3122 3230 2.558795 TCACTCTCCTTCGTCTTGGAAG 59.441 50.000 0.00 0.00 42.42 3.46
3143 3326 3.017581 GCAGGGGAGGGTCATGGT 61.018 66.667 0.00 0.00 0.00 3.55
3144 3327 3.016971 TGCAGGGGAGGGTCATGG 61.017 66.667 0.00 0.00 0.00 3.66
3145 3328 2.273449 GTGCAGGGGAGGGTCATG 59.727 66.667 0.00 0.00 0.00 3.07
3146 3329 3.402681 CGTGCAGGGGAGGGTCAT 61.403 66.667 0.00 0.00 0.00 3.06
3147 3330 4.631740 TCGTGCAGGGGAGGGTCA 62.632 66.667 6.56 0.00 0.00 4.02
3148 3331 4.083862 GTCGTGCAGGGGAGGGTC 62.084 72.222 6.56 0.00 0.00 4.46
3249 3447 4.939439 TCACCACATGTTCTCATCATGAAG 59.061 41.667 0.00 0.00 43.47 3.02
3285 3483 3.654143 TGCACCAGGAGCAGCCAT 61.654 61.111 7.60 0.00 40.02 4.40
3337 3535 0.393402 TCAGCACCACATGAGCATCC 60.393 55.000 0.00 0.00 0.00 3.51
3349 3547 3.788937 AGCAAATGCATAATTCAGCACC 58.211 40.909 8.28 0.00 44.49 5.01
3391 3589 1.419922 GCTTGTATGTGCACGACCG 59.580 57.895 13.13 7.83 0.00 4.79
3428 3626 7.332926 CCACAGGAAAATCTCGGATCAATATAG 59.667 40.741 0.00 0.00 0.00 1.31
3445 3643 3.193267 GCATAATTCAGCACCACAGGAAA 59.807 43.478 0.00 0.00 0.00 3.13
3470 3668 3.120199 GCCGCAATCACATATACATGGTC 60.120 47.826 0.00 0.00 36.39 4.02
3581 3779 6.596106 TCCTTATTTGTATCTGCTAAAACGCA 59.404 34.615 0.00 0.00 38.40 5.24
3589 3787 7.577303 TCCATTCTTCCTTATTTGTATCTGCT 58.423 34.615 0.00 0.00 0.00 4.24
3642 3840 1.765657 GAGCAGGAGGAGGATGGCT 60.766 63.158 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.