Multiple sequence alignment - TraesCS2B01G060400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G060400 chr2B 100.000 2240 0 0 1 2240 29043623 29045862 0.000000e+00 4137
1 TraesCS2B01G060400 chr2B 91.965 1257 71 21 78 1320 29994329 29993089 0.000000e+00 1735
2 TraesCS2B01G060400 chr2B 87.868 1088 100 17 232 1312 28906550 28907612 0.000000e+00 1249
3 TraesCS2B01G060400 chr2B 87.263 581 48 17 1588 2162 28907775 28908335 6.750000e-180 640
4 TraesCS2B01G060400 chr2B 86.381 514 40 18 1588 2094 29992937 29992447 3.270000e-148 534
5 TraesCS2B01G060400 chr2B 85.455 220 18 11 1355 1561 28907565 28907783 1.350000e-52 217
6 TraesCS2B01G060400 chr2B 85.068 221 16 13 1355 1561 29993146 29992929 2.250000e-50 209
7 TraesCS2B01G060400 chr2D 87.542 1196 122 18 124 1312 17309827 17311002 0.000000e+00 1358
8 TraesCS2B01G060400 chr2D 84.685 999 108 26 119 1113 17164936 17165893 0.000000e+00 955
9 TraesCS2B01G060400 chr2D 86.412 655 47 25 1588 2220 17311163 17311797 0.000000e+00 678
10 TraesCS2B01G060400 chr2D 85.757 674 52 25 1588 2239 17168101 17168752 0.000000e+00 673
11 TraesCS2B01G060400 chr2D 87.615 218 15 10 1355 1561 17310955 17311171 2.220000e-60 243
12 TraesCS2B01G060400 chr2D 93.333 105 7 0 1167 1271 17165886 17165990 2.980000e-34 156
13 TraesCS2B01G060400 chr2A 94.035 570 28 4 1674 2240 18585323 18585889 0.000000e+00 859
14 TraesCS2B01G060400 chr2A 94.872 507 23 3 812 1315 18584402 18584908 0.000000e+00 789
15 TraesCS2B01G060400 chr2A 82.794 866 109 27 1 845 18583542 18584388 0.000000e+00 737
16 TraesCS2B01G060400 chr2A 87.113 582 44 17 1588 2162 18634833 18635390 4.060000e-177 630
17 TraesCS2B01G060400 chr2A 91.832 404 27 6 920 1320 18634282 18634682 1.940000e-155 558
18 TraesCS2B01G060400 chr2A 92.500 200 11 3 1447 1644 18585124 18585321 1.310000e-72 283
19 TraesCS2B01G060400 chr2A 87.671 219 13 10 1355 1561 18634625 18634841 2.220000e-60 243


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G060400 chr2B 29043623 29045862 2239 False 4137.000000 4137 100.000000 1 2240 1 chr2B.!!$F1 2239
1 TraesCS2B01G060400 chr2B 29992447 29994329 1882 True 826.000000 1735 87.804667 78 2094 3 chr2B.!!$R1 2016
2 TraesCS2B01G060400 chr2B 28906550 28908335 1785 False 702.000000 1249 86.862000 232 2162 3 chr2B.!!$F2 1930
3 TraesCS2B01G060400 chr2D 17309827 17311797 1970 False 759.666667 1358 87.189667 124 2220 3 chr2D.!!$F2 2096
4 TraesCS2B01G060400 chr2D 17164936 17168752 3816 False 594.666667 955 87.925000 119 2239 3 chr2D.!!$F1 2120
5 TraesCS2B01G060400 chr2A 18583542 18585889 2347 False 667.000000 859 91.050250 1 2240 4 chr2A.!!$F1 2239
6 TraesCS2B01G060400 chr2A 18634282 18635390 1108 False 477.000000 630 88.872000 920 2162 3 chr2A.!!$F2 1242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
792 839 2.110188 TCACCTAGGTGGAGAGAACACT 59.89 50.0 35.94 0.0 45.43 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 4140 4.457257 GGAGAGAGGAATGTTTTTCACCAG 59.543 45.833 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.941127 TTTGTGCTGTTTGTTTCAATTTTTAC 57.059 26.923 0.00 0.00 0.00 2.01
30 31 9.049974 GTGCTGTTTGTTTCAATTTTTACTTTG 57.950 29.630 0.00 0.00 0.00 2.77
31 32 8.778358 TGCTGTTTGTTTCAATTTTTACTTTGT 58.222 25.926 0.00 0.00 0.00 2.83
33 34 9.753669 CTGTTTGTTTCAATTTTTACTTTGTCC 57.246 29.630 0.00 0.00 0.00 4.02
259 299 9.745018 AATCCTCAGTCATTTTCTGATTTTAGA 57.255 29.630 0.00 0.00 40.46 2.10
364 404 4.588899 TGTCTACAATTGGATCCAGGTTG 58.411 43.478 27.42 27.42 33.01 3.77
475 516 7.741554 AGATCTTACCACCTAACTGAAATCT 57.258 36.000 0.00 0.00 0.00 2.40
477 518 6.928348 TCTTACCACCTAACTGAAATCTCA 57.072 37.500 0.00 0.00 0.00 3.27
598 645 7.907563 GTCATACTGAAAGATAGCTGAAAAAGC 59.092 37.037 0.00 0.00 45.81 3.51
618 665 9.768662 AAAAAGCAAGATATATTAATGCCCTTG 57.231 29.630 12.15 7.56 37.73 3.61
790 837 2.992847 TCACCTAGGTGGAGAGAACA 57.007 50.000 35.94 15.79 45.43 3.18
791 838 2.526432 TCACCTAGGTGGAGAGAACAC 58.474 52.381 35.94 0.00 45.43 3.32
792 839 2.110188 TCACCTAGGTGGAGAGAACACT 59.890 50.000 35.94 0.00 45.43 3.55
793 840 3.332783 TCACCTAGGTGGAGAGAACACTA 59.667 47.826 35.94 13.87 45.43 2.74
794 841 4.017407 TCACCTAGGTGGAGAGAACACTAT 60.017 45.833 35.94 0.00 45.43 2.12
795 842 5.193124 TCACCTAGGTGGAGAGAACACTATA 59.807 44.000 35.94 13.26 45.43 1.31
796 843 5.892119 CACCTAGGTGGAGAGAACACTATAA 59.108 44.000 31.15 0.00 42.00 0.98
797 844 6.380274 CACCTAGGTGGAGAGAACACTATAAA 59.620 42.308 31.15 0.00 42.00 1.40
798 845 6.380560 ACCTAGGTGGAGAGAACACTATAAAC 59.619 42.308 15.42 0.00 38.83 2.01
799 846 6.380274 CCTAGGTGGAGAGAACACTATAAACA 59.620 42.308 0.00 0.00 38.83 2.83
800 847 6.287589 AGGTGGAGAGAACACTATAAACAG 57.712 41.667 0.00 0.00 38.83 3.16
801 848 6.017192 AGGTGGAGAGAACACTATAAACAGA 58.983 40.000 0.00 0.00 38.83 3.41
915 1009 7.176865 TCTCTCTGCCTATAAGTAACGCATAAT 59.823 37.037 0.00 0.00 0.00 1.28
1106 1209 7.255312 CCATGTACTAGATGGAGTAGTGAAGAC 60.255 44.444 6.40 0.00 42.81 3.01
1116 1219 1.520600 TAGTGAAGACGGCAGCGACA 61.521 55.000 0.00 0.00 0.00 4.35
1119 1222 4.379243 AAGACGGCAGCGACAGGG 62.379 66.667 0.00 0.00 0.00 4.45
1127 1230 4.095400 AGCGACAGGGGAGGGGAT 62.095 66.667 0.00 0.00 0.00 3.85
1149 1252 1.797046 GCGATCGACAATCATCATGCT 59.203 47.619 21.57 0.00 33.65 3.79
1191 1294 1.305623 CTGGAGCAGCCCTGGAAAT 59.694 57.895 0.00 0.00 34.97 2.17
1240 1343 0.449388 CGAAGAAGCCAAGCCATGAC 59.551 55.000 0.00 0.00 0.00 3.06
1244 1349 0.610232 GAAGCCAAGCCATGACCAGT 60.610 55.000 0.00 0.00 0.00 4.00
1261 1366 2.934553 CCAGTCTGATATATGCATGCCG 59.065 50.000 16.68 0.00 0.00 5.69
1342 3356 4.906423 CGTATACGTACTCTTTGCAGTCT 58.094 43.478 17.16 0.00 34.11 3.24
1343 3357 4.729086 CGTATACGTACTCTTTGCAGTCTG 59.271 45.833 17.16 0.00 34.11 3.51
1344 3358 5.446875 CGTATACGTACTCTTTGCAGTCTGA 60.447 44.000 17.16 0.00 34.11 3.27
1345 3359 3.944055 ACGTACTCTTTGCAGTCTGAT 57.056 42.857 3.32 0.00 0.00 2.90
1346 3360 6.694877 ATACGTACTCTTTGCAGTCTGATA 57.305 37.500 3.32 0.00 0.00 2.15
1347 3361 5.584253 ACGTACTCTTTGCAGTCTGATAT 57.416 39.130 3.32 0.00 0.00 1.63
1348 3362 5.967088 ACGTACTCTTTGCAGTCTGATATT 58.033 37.500 3.32 0.00 0.00 1.28
1349 3363 6.037098 ACGTACTCTTTGCAGTCTGATATTC 58.963 40.000 3.32 0.00 0.00 1.75
1350 3364 6.127591 ACGTACTCTTTGCAGTCTGATATTCT 60.128 38.462 3.32 0.00 0.00 2.40
1351 3365 7.067129 ACGTACTCTTTGCAGTCTGATATTCTA 59.933 37.037 3.32 0.00 0.00 2.10
1352 3366 7.589587 CGTACTCTTTGCAGTCTGATATTCTAG 59.410 40.741 3.32 0.00 0.00 2.43
1353 3367 6.815089 ACTCTTTGCAGTCTGATATTCTAGG 58.185 40.000 3.32 0.00 0.00 3.02
1354 3368 6.166984 TCTTTGCAGTCTGATATTCTAGGG 57.833 41.667 3.32 0.00 0.00 3.53
1355 3369 5.663106 TCTTTGCAGTCTGATATTCTAGGGT 59.337 40.000 3.32 0.00 0.00 4.34
1356 3370 6.839134 TCTTTGCAGTCTGATATTCTAGGGTA 59.161 38.462 3.32 0.00 0.00 3.69
1357 3371 6.406692 TTGCAGTCTGATATTCTAGGGTAC 57.593 41.667 3.32 0.00 0.00 3.34
1358 3372 4.519350 TGCAGTCTGATATTCTAGGGTACG 59.481 45.833 3.32 0.00 0.00 3.67
1359 3373 4.519730 GCAGTCTGATATTCTAGGGTACGT 59.480 45.833 3.32 0.00 0.00 3.57
1360 3374 5.704515 GCAGTCTGATATTCTAGGGTACGTA 59.295 44.000 3.32 0.00 0.00 3.57
1361 3375 6.128227 GCAGTCTGATATTCTAGGGTACGTAG 60.128 46.154 3.32 0.00 46.90 3.51
1362 3376 5.939296 AGTCTGATATTCTAGGGTACGTAGC 59.061 44.000 16.33 16.33 45.35 3.58
1363 3377 5.704515 GTCTGATATTCTAGGGTACGTAGCA 59.295 44.000 24.76 5.69 45.35 3.49
1364 3378 5.938710 TCTGATATTCTAGGGTACGTAGCAG 59.061 44.000 24.76 15.06 45.35 4.24
1365 3379 5.872963 TGATATTCTAGGGTACGTAGCAGA 58.127 41.667 24.76 16.99 45.35 4.26
1366 3380 5.704515 TGATATTCTAGGGTACGTAGCAGAC 59.295 44.000 24.76 9.01 45.35 3.51
1367 3381 3.641434 TTCTAGGGTACGTAGCAGACT 57.359 47.619 24.76 15.38 45.35 3.24
1368 3382 3.641434 TCTAGGGTACGTAGCAGACTT 57.359 47.619 24.76 8.28 45.35 3.01
1369 3383 3.960571 TCTAGGGTACGTAGCAGACTTT 58.039 45.455 24.76 6.72 45.35 2.66
1370 3384 3.693085 TCTAGGGTACGTAGCAGACTTTG 59.307 47.826 24.76 10.21 45.35 2.77
1381 3395 2.119801 CAGACTTTGCATGCTAGGGT 57.880 50.000 20.33 13.58 0.00 4.34
1382 3396 1.741706 CAGACTTTGCATGCTAGGGTG 59.258 52.381 20.33 9.98 0.00 4.61
1383 3397 1.352352 AGACTTTGCATGCTAGGGTGT 59.648 47.619 20.33 9.77 0.00 4.16
1384 3398 2.571653 AGACTTTGCATGCTAGGGTGTA 59.428 45.455 20.33 0.00 0.00 2.90
1385 3399 3.200825 AGACTTTGCATGCTAGGGTGTAT 59.799 43.478 20.33 3.97 0.00 2.29
1386 3400 4.408921 AGACTTTGCATGCTAGGGTGTATA 59.591 41.667 20.33 0.00 0.00 1.47
1387 3401 5.072329 AGACTTTGCATGCTAGGGTGTATAT 59.928 40.000 20.33 0.00 0.00 0.86
1388 3402 6.270000 AGACTTTGCATGCTAGGGTGTATATA 59.730 38.462 20.33 0.00 0.00 0.86
1389 3403 7.020827 ACTTTGCATGCTAGGGTGTATATAT 57.979 36.000 20.33 0.00 0.00 0.86
1390 3404 8.146053 ACTTTGCATGCTAGGGTGTATATATA 57.854 34.615 20.33 0.00 0.00 0.86
1391 3405 8.772250 ACTTTGCATGCTAGGGTGTATATATAT 58.228 33.333 20.33 0.00 0.00 0.86
1422 3436 7.044181 AGTAGTAGTAGTAGTTGCATGTCGTA 58.956 38.462 0.00 0.00 0.00 3.43
1427 3441 3.585862 AGTAGTTGCATGTCGTAGGTTG 58.414 45.455 0.00 0.00 0.00 3.77
1441 3455 3.367087 CGTAGGTTGCTAGTTGTGCTACT 60.367 47.826 0.00 0.00 36.65 2.57
1617 3720 8.768501 AGTACTACCAAGATATGAATCAGTCA 57.231 34.615 0.00 0.00 41.67 3.41
1699 3802 6.984474 GGTACACATCGAATCCTTCATTAGAA 59.016 38.462 0.00 0.00 30.72 2.10
1955 4075 0.677731 GCCTGTTGTCTGCTGGCATA 60.678 55.000 0.00 0.00 46.11 3.14
1970 4090 5.184671 TGCTGGCATAATACAATTGAACACA 59.815 36.000 13.59 0.00 0.00 3.72
2115 4237 2.293399 CCTAAGCTGAAACCACACCAAC 59.707 50.000 0.00 0.00 0.00 3.77
2122 4244 3.919216 TGAAACCACACCAACTTGTTTG 58.081 40.909 0.00 0.00 34.63 2.93
2235 4374 6.245115 TCATATGACGATGCAATTCCATTC 57.755 37.500 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.753669 GGACAAAGTAAAAATTGAAACAAACAG 57.246 29.630 0.00 0.00 0.00 3.16
89 105 6.793349 TGAAAATTCAAAACATTGCCCAAAG 58.207 32.000 0.00 0.00 33.55 2.77
242 281 8.998377 TCAACACGATCTAAAATCAGAAAATGA 58.002 29.630 0.00 0.00 43.70 2.57
259 299 2.761559 TGAACAACCGATCAACACGAT 58.238 42.857 0.00 0.00 36.91 3.73
400 440 4.402829 AGCCTCCTTTTCTCTTTCCTTTC 58.597 43.478 0.00 0.00 0.00 2.62
475 516 6.936335 TGAGAAAGAACATAGCTGTCAAATGA 59.064 34.615 0.00 0.00 33.36 2.57
477 518 7.934855 ATGAGAAAGAACATAGCTGTCAAAT 57.065 32.000 0.00 0.00 33.36 2.32
598 645 7.667219 AGTGGACAAGGGCATTAATATATCTTG 59.333 37.037 13.63 13.63 36.96 3.02
599 646 7.759607 AGTGGACAAGGGCATTAATATATCTT 58.240 34.615 0.00 0.00 0.00 2.40
607 654 5.777732 ACAATTTAGTGGACAAGGGCATTAA 59.222 36.000 0.00 0.00 0.00 1.40
618 665 9.209175 CTATTGGATAGCTACAATTTAGTGGAC 57.791 37.037 13.12 0.00 38.24 4.02
795 842 9.077885 TGCCTCTTTAATTATCTTGTTCTGTTT 57.922 29.630 0.00 0.00 0.00 2.83
796 843 8.515414 GTGCCTCTTTAATTATCTTGTTCTGTT 58.485 33.333 0.00 0.00 0.00 3.16
797 844 7.885399 AGTGCCTCTTTAATTATCTTGTTCTGT 59.115 33.333 0.00 0.00 0.00 3.41
798 845 8.180267 CAGTGCCTCTTTAATTATCTTGTTCTG 58.820 37.037 0.00 0.00 0.00 3.02
799 846 7.148171 GCAGTGCCTCTTTAATTATCTTGTTCT 60.148 37.037 2.85 0.00 0.00 3.01
800 847 6.969473 GCAGTGCCTCTTTAATTATCTTGTTC 59.031 38.462 2.85 0.00 0.00 3.18
801 848 6.127619 GGCAGTGCCTCTTTAATTATCTTGTT 60.128 38.462 27.48 0.00 46.69 2.83
904 998 4.143514 GCACGAGATCTGATTATGCGTTAC 60.144 45.833 0.00 0.00 0.00 2.50
915 1009 0.532573 GGTTGAGGCACGAGATCTGA 59.467 55.000 0.00 0.00 0.00 3.27
1116 1219 4.192997 ATCGCCATCCCCTCCCCT 62.193 66.667 0.00 0.00 0.00 4.79
1119 1222 2.917751 TCGATCGCCATCCCCTCC 60.918 66.667 11.09 0.00 0.00 4.30
1127 1230 2.137523 CATGATGATTGTCGATCGCCA 58.862 47.619 11.09 1.09 37.60 5.69
1240 1343 2.934553 CGGCATGCATATATCAGACTGG 59.065 50.000 21.36 0.00 0.00 4.00
1244 1349 4.006780 ACAACGGCATGCATATATCAGA 57.993 40.909 21.36 0.00 0.00 3.27
1261 1366 5.444218 GCATGCAAAGTCTACTACGTACAAC 60.444 44.000 14.21 0.00 0.00 3.32
1272 1377 3.181479 CGTACCCTAGCATGCAAAGTCTA 60.181 47.826 21.98 0.78 0.00 2.59
1320 3334 4.729086 CAGACTGCAAAGAGTACGTATACG 59.271 45.833 23.24 23.24 46.33 3.06
1321 3335 5.877031 TCAGACTGCAAAGAGTACGTATAC 58.123 41.667 0.00 0.00 0.00 1.47
1322 3336 6.694877 ATCAGACTGCAAAGAGTACGTATA 57.305 37.500 0.00 0.00 0.00 1.47
1323 3337 5.584253 ATCAGACTGCAAAGAGTACGTAT 57.416 39.130 0.00 0.00 0.00 3.06
1324 3338 6.694877 ATATCAGACTGCAAAGAGTACGTA 57.305 37.500 0.00 0.00 0.00 3.57
1325 3339 3.944055 ATCAGACTGCAAAGAGTACGT 57.056 42.857 0.00 0.00 0.00 3.57
1326 3340 6.269315 AGAATATCAGACTGCAAAGAGTACG 58.731 40.000 0.00 0.00 0.00 3.67
1327 3341 7.865385 CCTAGAATATCAGACTGCAAAGAGTAC 59.135 40.741 0.00 0.00 0.00 2.73
1328 3342 7.014711 CCCTAGAATATCAGACTGCAAAGAGTA 59.985 40.741 0.00 0.00 0.00 2.59
1329 3343 6.183360 CCCTAGAATATCAGACTGCAAAGAGT 60.183 42.308 0.00 0.00 0.00 3.24
1330 3344 6.183360 ACCCTAGAATATCAGACTGCAAAGAG 60.183 42.308 0.00 0.00 0.00 2.85
1331 3345 5.663106 ACCCTAGAATATCAGACTGCAAAGA 59.337 40.000 0.00 0.00 0.00 2.52
1332 3346 5.923204 ACCCTAGAATATCAGACTGCAAAG 58.077 41.667 0.00 0.00 0.00 2.77
1333 3347 5.957771 ACCCTAGAATATCAGACTGCAAA 57.042 39.130 0.00 0.00 0.00 3.68
1334 3348 5.009710 CGTACCCTAGAATATCAGACTGCAA 59.990 44.000 0.00 0.00 0.00 4.08
1335 3349 4.519350 CGTACCCTAGAATATCAGACTGCA 59.481 45.833 0.00 0.00 0.00 4.41
1336 3350 4.519730 ACGTACCCTAGAATATCAGACTGC 59.480 45.833 0.00 0.00 0.00 4.40
1337 3351 6.128227 GCTACGTACCCTAGAATATCAGACTG 60.128 46.154 0.00 0.00 0.00 3.51
1338 3352 5.939296 GCTACGTACCCTAGAATATCAGACT 59.061 44.000 0.00 0.00 0.00 3.24
1339 3353 5.704515 TGCTACGTACCCTAGAATATCAGAC 59.295 44.000 0.00 0.00 0.00 3.51
1340 3354 5.872963 TGCTACGTACCCTAGAATATCAGA 58.127 41.667 0.00 0.00 0.00 3.27
1341 3355 5.938710 TCTGCTACGTACCCTAGAATATCAG 59.061 44.000 0.00 0.00 0.00 2.90
1342 3356 5.704515 GTCTGCTACGTACCCTAGAATATCA 59.295 44.000 0.00 0.00 0.00 2.15
1343 3357 5.939296 AGTCTGCTACGTACCCTAGAATATC 59.061 44.000 0.00 0.00 0.00 1.63
1344 3358 5.878627 AGTCTGCTACGTACCCTAGAATAT 58.121 41.667 0.00 0.00 0.00 1.28
1345 3359 5.301835 AGTCTGCTACGTACCCTAGAATA 57.698 43.478 0.00 0.00 0.00 1.75
1346 3360 4.167652 AGTCTGCTACGTACCCTAGAAT 57.832 45.455 0.00 0.00 0.00 2.40
1347 3361 3.641434 AGTCTGCTACGTACCCTAGAA 57.359 47.619 0.00 0.00 0.00 2.10
1348 3362 3.641434 AAGTCTGCTACGTACCCTAGA 57.359 47.619 0.00 0.00 0.00 2.43
1349 3363 4.030134 CAAAGTCTGCTACGTACCCTAG 57.970 50.000 0.00 0.00 0.00 3.02
1362 3376 1.741706 CACCCTAGCATGCAAAGTCTG 59.258 52.381 21.98 9.58 0.00 3.51
1363 3377 1.352352 ACACCCTAGCATGCAAAGTCT 59.648 47.619 21.98 0.00 0.00 3.24
1364 3378 1.826385 ACACCCTAGCATGCAAAGTC 58.174 50.000 21.98 0.00 0.00 3.01
1365 3379 3.652057 ATACACCCTAGCATGCAAAGT 57.348 42.857 21.98 8.66 0.00 2.66
1393 3407 9.539825 GACATGCAACTACTACTACTACTACTA 57.460 37.037 0.00 0.00 0.00 1.82
1394 3408 7.224362 CGACATGCAACTACTACTACTACTACT 59.776 40.741 0.00 0.00 0.00 2.57
1395 3409 7.010923 ACGACATGCAACTACTACTACTACTAC 59.989 40.741 0.00 0.00 0.00 2.73
1396 3410 7.044181 ACGACATGCAACTACTACTACTACTA 58.956 38.462 0.00 0.00 0.00 1.82
1397 3411 5.879223 ACGACATGCAACTACTACTACTACT 59.121 40.000 0.00 0.00 0.00 2.57
1398 3412 6.116680 ACGACATGCAACTACTACTACTAC 57.883 41.667 0.00 0.00 0.00 2.73
1399 3413 6.481313 CCTACGACATGCAACTACTACTACTA 59.519 42.308 0.00 0.00 0.00 1.82
1400 3414 5.296283 CCTACGACATGCAACTACTACTACT 59.704 44.000 0.00 0.00 0.00 2.57
1401 3415 5.065731 ACCTACGACATGCAACTACTACTAC 59.934 44.000 0.00 0.00 0.00 2.73
1422 3436 3.771577 AAGTAGCACAACTAGCAACCT 57.228 42.857 0.00 0.00 0.00 3.50
1441 3455 6.938030 CCGGCTCACCCTTAATTTACATATAA 59.062 38.462 0.00 0.00 0.00 0.98
1511 3612 8.956426 ACTATCAATGAATATGGAAAACGTTGT 58.044 29.630 0.00 0.00 0.00 3.32
1743 3863 9.671279 TTCAACATCAATCTTATGAGTACACAT 57.329 29.630 10.71 10.71 31.76 3.21
1745 3865 8.607459 CCTTCAACATCAATCTTATGAGTACAC 58.393 37.037 0.00 0.00 31.76 2.90
1748 3868 9.383519 GTTCCTTCAACATCAATCTTATGAGTA 57.616 33.333 0.00 0.00 34.76 2.59
1911 4031 5.237815 AGACTCTCGTTAACAATTGCATGA 58.762 37.500 5.05 0.22 0.00 3.07
2020 4140 4.457257 GGAGAGAGGAATGTTTTTCACCAG 59.543 45.833 0.00 0.00 0.00 4.00
2023 4143 5.308825 TGAGGAGAGAGGAATGTTTTTCAC 58.691 41.667 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.