Multiple sequence alignment - TraesCS2B01G060000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G060000 chr2B 100.000 2570 0 0 1819 4388 29018115 29020684 0.000000e+00 4747.0
1 TraesCS2B01G060000 chr2B 100.000 1534 0 0 1 1534 29016297 29017830 0.000000e+00 2833.0
2 TraesCS2B01G060000 chr2B 98.630 584 4 3 3809 4388 187783531 187784114 0.000000e+00 1031.0
3 TraesCS2B01G060000 chr2B 98.132 589 7 3 3804 4388 187774516 187775104 0.000000e+00 1024.0
4 TraesCS2B01G060000 chr2B 90.530 528 43 5 1 526 29995415 29994893 0.000000e+00 691.0
5 TraesCS2B01G060000 chr2B 80.349 229 45 0 2015 2243 636871402 636871630 1.620000e-39 174.0
6 TraesCS2B01G060000 chr2B 92.453 53 4 0 2862 2914 15097998 15098050 4.710000e-10 76.8
7 TraesCS2B01G060000 chr1A 89.325 993 93 8 1884 2867 562618619 562617631 0.000000e+00 1234.0
8 TraesCS2B01G060000 chr1A 88.098 731 85 2 3025 3755 562617638 562616910 0.000000e+00 867.0
9 TraesCS2B01G060000 chr1A 92.982 57 4 0 2871 2927 567829767 567829711 2.810000e-12 84.2
10 TraesCS2B01G060000 chr1A 92.982 57 4 0 2871 2927 567856171 567856115 2.810000e-12 84.2
11 TraesCS2B01G060000 chr1A 92.982 57 4 0 2871 2927 567884185 567884129 2.810000e-12 84.2
12 TraesCS2B01G060000 chr1A 91.228 57 5 0 2871 2927 567813307 567813251 1.310000e-10 78.7
13 TraesCS2B01G060000 chr6B 98.969 582 4 1 3809 4388 129335683 129335102 0.000000e+00 1040.0
14 TraesCS2B01G060000 chr6B 86.538 364 45 4 958 1320 56042547 56042187 8.840000e-107 398.0
15 TraesCS2B01G060000 chr6B 84.177 158 20 4 2865 3022 609873581 609873733 9.830000e-32 148.0
16 TraesCS2B01G060000 chrUn 98.967 581 5 1 3809 4388 314883275 314882695 0.000000e+00 1038.0
17 TraesCS2B01G060000 chr4D 87.597 903 100 10 1973 2867 151955981 151956879 0.000000e+00 1037.0
18 TraesCS2B01G060000 chr4D 85.373 711 95 9 3027 3735 151956874 151957577 0.000000e+00 728.0
19 TraesCS2B01G060000 chr4D 83.047 407 64 5 962 1366 151955104 151955507 8.970000e-97 364.0
20 TraesCS2B01G060000 chr6A 98.282 582 8 1 3809 4388 1299852 1300433 0.000000e+00 1018.0
21 TraesCS2B01G060000 chr6A 98.113 583 8 2 3809 4388 1316758 1317340 0.000000e+00 1013.0
22 TraesCS2B01G060000 chr6A 79.796 490 82 13 1973 2451 211404151 211403668 1.510000e-89 340.0
23 TraesCS2B01G060000 chr6A 78.919 370 71 7 1001 1366 211406409 211406043 1.220000e-60 244.0
24 TraesCS2B01G060000 chr7A 98.110 582 9 2 3809 4388 529615688 529616269 0.000000e+00 1013.0
25 TraesCS2B01G060000 chr7A 80.043 932 166 17 1946 2865 649471995 649472918 0.000000e+00 673.0
26 TraesCS2B01G060000 chr4A 98.113 583 8 2 3809 4388 290152776 290152194 0.000000e+00 1013.0
27 TraesCS2B01G060000 chr3B 98.110 582 9 1 3809 4388 85008532 85009113 0.000000e+00 1013.0
28 TraesCS2B01G060000 chr3B 86.381 514 66 3 856 1369 57392884 57392375 3.830000e-155 558.0
29 TraesCS2B01G060000 chr3B 86.187 514 66 4 856 1369 57419656 57419148 6.410000e-153 551.0
30 TraesCS2B01G060000 chr5D 87.419 771 85 6 1973 2734 133246581 133247348 0.000000e+00 876.0
31 TraesCS2B01G060000 chr5D 87.476 519 54 5 1973 2483 118270111 118270626 4.890000e-164 588.0
32 TraesCS2B01G060000 chr5D 84.146 410 58 7 962 1368 133245806 133246211 1.480000e-104 390.0
33 TraesCS2B01G060000 chr5D 83.415 410 61 7 962 1368 118269337 118269742 1.490000e-99 374.0
34 TraesCS2B01G060000 chr6D 80.221 905 159 16 1973 2865 462848049 462847153 0.000000e+00 662.0
35 TraesCS2B01G060000 chr6D 93.333 60 4 0 2867 2926 445702464 445702523 6.040000e-14 89.8
36 TraesCS2B01G060000 chr1B 83.122 711 109 10 3027 3733 51231611 51232314 4.790000e-179 638.0
37 TraesCS2B01G060000 chr1B 92.982 57 4 0 2871 2927 658468296 658468240 2.810000e-12 84.2
38 TraesCS2B01G060000 chr1B 92.683 41 1 2 992 1031 427223734 427223695 1.700000e-04 58.4
39 TraesCS2B01G060000 chr5A 83.858 508 79 3 2360 2865 709727602 709728108 8.540000e-132 481.0
40 TraesCS2B01G060000 chr5A 85.609 271 39 0 1973 2243 709727195 709727465 7.180000e-73 285.0
41 TraesCS2B01G060000 chr5B 84.127 441 42 10 545 961 65248270 65247834 6.840000e-108 401.0
42 TraesCS2B01G060000 chr5B 95.862 145 6 0 2070 2214 65247146 65247002 7.340000e-58 235.0
43 TraesCS2B01G060000 chr3D 85.606 132 19 0 1989 2120 191102653 191102784 5.920000e-29 139.0
44 TraesCS2B01G060000 chr1D 76.106 226 52 2 2019 2243 404198695 404198919 2.770000e-22 117.0
45 TraesCS2B01G060000 chr2A 77.222 180 31 8 694 868 677041254 677041428 3.610000e-16 97.1
46 TraesCS2B01G060000 chr7B 94.118 51 3 0 2864 2914 228787175 228787225 1.310000e-10 78.7
47 TraesCS2B01G060000 chr7D 95.122 41 0 2 992 1031 114494415 114494376 3.660000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G060000 chr2B 29016297 29020684 4387 False 3790.000000 4747 100.0000 1 4388 2 chr2B.!!$F5 4387
1 TraesCS2B01G060000 chr2B 187783531 187784114 583 False 1031.000000 1031 98.6300 3809 4388 1 chr2B.!!$F3 579
2 TraesCS2B01G060000 chr2B 187774516 187775104 588 False 1024.000000 1024 98.1320 3804 4388 1 chr2B.!!$F2 584
3 TraesCS2B01G060000 chr2B 29994893 29995415 522 True 691.000000 691 90.5300 1 526 1 chr2B.!!$R1 525
4 TraesCS2B01G060000 chr1A 562616910 562618619 1709 True 1050.500000 1234 88.7115 1884 3755 2 chr1A.!!$R5 1871
5 TraesCS2B01G060000 chr6B 129335102 129335683 581 True 1040.000000 1040 98.9690 3809 4388 1 chr6B.!!$R2 579
6 TraesCS2B01G060000 chrUn 314882695 314883275 580 True 1038.000000 1038 98.9670 3809 4388 1 chrUn.!!$R1 579
7 TraesCS2B01G060000 chr4D 151955104 151957577 2473 False 709.666667 1037 85.3390 962 3735 3 chr4D.!!$F1 2773
8 TraesCS2B01G060000 chr6A 1299852 1300433 581 False 1018.000000 1018 98.2820 3809 4388 1 chr6A.!!$F1 579
9 TraesCS2B01G060000 chr6A 1316758 1317340 582 False 1013.000000 1013 98.1130 3809 4388 1 chr6A.!!$F2 579
10 TraesCS2B01G060000 chr6A 211403668 211406409 2741 True 292.000000 340 79.3575 1001 2451 2 chr6A.!!$R1 1450
11 TraesCS2B01G060000 chr7A 529615688 529616269 581 False 1013.000000 1013 98.1100 3809 4388 1 chr7A.!!$F1 579
12 TraesCS2B01G060000 chr7A 649471995 649472918 923 False 673.000000 673 80.0430 1946 2865 1 chr7A.!!$F2 919
13 TraesCS2B01G060000 chr4A 290152194 290152776 582 True 1013.000000 1013 98.1130 3809 4388 1 chr4A.!!$R1 579
14 TraesCS2B01G060000 chr3B 85008532 85009113 581 False 1013.000000 1013 98.1100 3809 4388 1 chr3B.!!$F1 579
15 TraesCS2B01G060000 chr3B 57392375 57392884 509 True 558.000000 558 86.3810 856 1369 1 chr3B.!!$R1 513
16 TraesCS2B01G060000 chr3B 57419148 57419656 508 True 551.000000 551 86.1870 856 1369 1 chr3B.!!$R2 513
17 TraesCS2B01G060000 chr5D 133245806 133247348 1542 False 633.000000 876 85.7825 962 2734 2 chr5D.!!$F2 1772
18 TraesCS2B01G060000 chr5D 118269337 118270626 1289 False 481.000000 588 85.4455 962 2483 2 chr5D.!!$F1 1521
19 TraesCS2B01G060000 chr6D 462847153 462848049 896 True 662.000000 662 80.2210 1973 2865 1 chr6D.!!$R1 892
20 TraesCS2B01G060000 chr1B 51231611 51232314 703 False 638.000000 638 83.1220 3027 3733 1 chr1B.!!$F1 706
21 TraesCS2B01G060000 chr5A 709727195 709728108 913 False 383.000000 481 84.7335 1973 2865 2 chr5A.!!$F1 892
22 TraesCS2B01G060000 chr5B 65247002 65248270 1268 True 318.000000 401 89.9945 545 2214 2 chr5B.!!$R1 1669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 571 0.179084 GGACGCGGAGGAATTGATCA 60.179 55.0 12.47 0.0 0.00 2.92 F
570 573 0.249120 ACGCGGAGGAATTGATCACA 59.751 50.0 12.47 0.0 0.00 3.58 F
1204 1273 0.317103 CGCTATCCCGTTCTGTCGAG 60.317 60.0 0.00 0.0 0.00 4.04 F
2876 4661 0.036164 AACTTGTATGCACTGGCGGA 59.964 50.0 0.00 0.0 45.35 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 3710 0.178068 CTACAATCCGGACCCTGGTG 59.822 60.0 6.12 0.57 0.00 4.17 R
2331 4096 0.248289 CCACGATCGGTTTACCCTGT 59.752 55.0 20.98 0.00 0.00 4.00 R
2907 4692 0.179163 GTTTTCGCTATGTGCTGGGC 60.179 55.0 0.00 0.00 40.11 5.36 R
3800 5612 1.656587 AGGGATGTGACAGTTAGGCA 58.343 50.0 0.00 0.00 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
210 212 9.764363 CCAGATCTATACAAAAACTATACAGCA 57.236 33.333 0.00 0.00 0.00 4.41
231 233 8.096400 CAGCATGTATTGAAATCAGTTAAACG 57.904 34.615 0.00 0.00 0.00 3.60
233 235 8.941977 AGCATGTATTGAAATCAGTTAAACGTA 58.058 29.630 0.00 0.00 0.00 3.57
253 255 8.795842 AACGTATATTGGGTGACATTTAAGAA 57.204 30.769 0.00 0.00 0.00 2.52
526 529 0.320374 CGGAGGTCACTGGCTTTACA 59.680 55.000 0.00 0.00 0.00 2.41
527 530 1.270625 CGGAGGTCACTGGCTTTACAA 60.271 52.381 0.00 0.00 0.00 2.41
528 531 2.808933 CGGAGGTCACTGGCTTTACAAA 60.809 50.000 0.00 0.00 0.00 2.83
529 532 2.552743 GGAGGTCACTGGCTTTACAAAC 59.447 50.000 0.00 0.00 0.00 2.93
530 533 3.211045 GAGGTCACTGGCTTTACAAACA 58.789 45.455 0.00 0.00 0.00 2.83
531 534 3.214328 AGGTCACTGGCTTTACAAACAG 58.786 45.455 0.00 0.00 37.01 3.16
532 535 3.118038 AGGTCACTGGCTTTACAAACAGA 60.118 43.478 0.00 0.00 35.08 3.41
533 536 3.003378 GGTCACTGGCTTTACAAACAGAC 59.997 47.826 0.00 0.00 35.08 3.51
534 537 3.625764 GTCACTGGCTTTACAAACAGACA 59.374 43.478 0.00 0.00 35.08 3.41
535 538 4.095782 GTCACTGGCTTTACAAACAGACAA 59.904 41.667 0.00 0.00 35.08 3.18
536 539 4.702612 TCACTGGCTTTACAAACAGACAAA 59.297 37.500 0.00 0.00 35.08 2.83
537 540 5.184096 TCACTGGCTTTACAAACAGACAAAA 59.816 36.000 0.00 0.00 35.08 2.44
538 541 5.516339 CACTGGCTTTACAAACAGACAAAAG 59.484 40.000 0.00 0.00 35.08 2.27
539 542 5.417580 ACTGGCTTTACAAACAGACAAAAGA 59.582 36.000 0.00 0.00 35.08 2.52
540 543 6.071616 ACTGGCTTTACAAACAGACAAAAGAA 60.072 34.615 0.00 0.00 35.08 2.52
541 544 6.692486 TGGCTTTACAAACAGACAAAAGAAA 58.308 32.000 0.00 0.00 30.44 2.52
542 545 7.155328 TGGCTTTACAAACAGACAAAAGAAAA 58.845 30.769 0.00 0.00 30.44 2.29
543 546 7.117092 TGGCTTTACAAACAGACAAAAGAAAAC 59.883 33.333 0.00 0.00 30.44 2.43
544 547 7.117092 GGCTTTACAAACAGACAAAAGAAAACA 59.883 33.333 0.00 0.00 30.44 2.83
545 548 8.655970 GCTTTACAAACAGACAAAAGAAAACAT 58.344 29.630 0.00 0.00 30.44 2.71
568 571 0.179084 GGACGCGGAGGAATTGATCA 60.179 55.000 12.47 0.00 0.00 2.92
570 573 0.249120 ACGCGGAGGAATTGATCACA 59.751 50.000 12.47 0.00 0.00 3.58
574 577 2.636830 CGGAGGAATTGATCACAAGCT 58.363 47.619 0.00 0.00 39.46 3.74
575 578 2.353889 CGGAGGAATTGATCACAAGCTG 59.646 50.000 0.00 0.00 39.46 4.24
576 579 2.098770 GGAGGAATTGATCACAAGCTGC 59.901 50.000 0.00 0.00 39.46 5.25
577 580 2.751259 GAGGAATTGATCACAAGCTGCA 59.249 45.455 1.02 0.00 39.46 4.41
578 581 2.753452 AGGAATTGATCACAAGCTGCAG 59.247 45.455 10.11 10.11 39.46 4.41
579 582 2.490903 GGAATTGATCACAAGCTGCAGT 59.509 45.455 16.64 0.00 39.46 4.40
581 584 1.241165 TTGATCACAAGCTGCAGTGG 58.759 50.000 16.64 7.70 36.43 4.00
587 590 1.301244 CAAGCTGCAGTGGTCTCGT 60.301 57.895 16.64 0.00 0.00 4.18
588 591 0.882042 CAAGCTGCAGTGGTCTCGTT 60.882 55.000 16.64 0.00 0.00 3.85
596 599 2.735762 GCAGTGGTCTCGTTATCTGTCC 60.736 54.545 0.00 0.00 0.00 4.02
601 604 1.299165 CTCGTTATCTGTCCCGCCG 60.299 63.158 0.00 0.00 0.00 6.46
604 607 0.458889 CGTTATCTGTCCCGCCGAAA 60.459 55.000 0.00 0.00 0.00 3.46
608 611 2.240493 ATCTGTCCCGCCGAAAATAG 57.760 50.000 0.00 0.00 0.00 1.73
628 631 1.932160 CGTCGTGATTCGTTTTGTGG 58.068 50.000 0.00 0.00 40.80 4.17
656 659 2.821366 GCCGGTGTCAGGAGCATG 60.821 66.667 1.90 0.00 0.00 4.06
659 683 1.812922 CGGTGTCAGGAGCATGAGC 60.813 63.158 0.00 0.00 42.56 4.26
662 686 0.321919 GTGTCAGGAGCATGAGCCAA 60.322 55.000 0.00 0.00 43.56 4.52
675 699 1.071542 TGAGCCAACGTGGAAATGAGA 59.928 47.619 8.04 0.00 40.96 3.27
683 707 5.278957 CCAACGTGGAAATGAGAAGGAAAAT 60.279 40.000 0.00 0.00 40.96 1.82
699 724 5.705400 AGGAAAATGAGAAAAACTCCTGGA 58.295 37.500 0.00 0.00 44.34 3.86
713 738 1.553690 CCTGGACGGTGGACCTGAAT 61.554 60.000 0.00 0.00 0.00 2.57
719 744 1.635663 CGGTGGACCTGAATTGCGTC 61.636 60.000 0.00 0.00 0.00 5.19
720 745 0.605319 GGTGGACCTGAATTGCGTCA 60.605 55.000 0.00 0.00 0.00 4.35
721 746 0.517316 GTGGACCTGAATTGCGTCAC 59.483 55.000 0.00 0.00 0.00 3.67
741 766 0.959553 TATTCGAGGCCGTGGAGATC 59.040 55.000 0.00 0.00 37.05 2.75
770 795 3.733960 CCGTGGCTCGAGACGTCA 61.734 66.667 18.75 5.36 42.86 4.35
772 797 2.955402 GTGGCTCGAGACGTCAGT 59.045 61.111 18.75 0.00 0.00 3.41
801 826 0.949105 GTCCGTGATTCAAGCGTGGT 60.949 55.000 0.00 0.00 0.00 4.16
817 842 1.023502 TGGTAACGACGTCACTGTGA 58.976 50.000 17.16 6.36 42.51 3.58
870 895 0.618680 AGCTGCCTCATACCTCCACA 60.619 55.000 0.00 0.00 0.00 4.17
885 910 3.628513 CCTCCACAATCTCCTAGTCTGGA 60.629 52.174 0.00 0.00 34.52 3.86
886 911 4.222336 CTCCACAATCTCCTAGTCTGGAT 58.778 47.826 0.00 0.00 35.30 3.41
889 914 4.125703 CACAATCTCCTAGTCTGGATTGC 58.874 47.826 16.73 0.00 44.91 3.56
897 922 6.665680 TCTCCTAGTCTGGATTGCTATTATCC 59.334 42.308 0.00 0.00 41.63 2.59
899 924 6.211584 TCCTAGTCTGGATTGCTATTATCCAC 59.788 42.308 0.00 0.00 45.02 4.02
936 961 0.815615 GGCGGCTTCATCACTTAGGG 60.816 60.000 0.00 0.00 0.00 3.53
1031 1094 2.594592 GCAGCCGGTGAACAGGTT 60.595 61.111 1.90 0.00 33.54 3.50
1032 1095 2.193536 GCAGCCGGTGAACAGGTTT 61.194 57.895 1.90 0.00 33.54 3.27
1035 1098 0.535102 AGCCGGTGAACAGGTTTGAG 60.535 55.000 1.90 0.00 33.54 3.02
1040 1103 2.544267 CGGTGAACAGGTTTGAGTCTTC 59.456 50.000 0.00 0.00 0.00 2.87
1041 1104 2.879026 GGTGAACAGGTTTGAGTCTTCC 59.121 50.000 0.00 0.00 0.00 3.46
1068 1132 1.302832 GACTGCTTGGTCCACCCTG 60.303 63.158 0.00 0.00 34.29 4.45
1078 1142 3.963129 TGGTCCACCCTGTATTGATTTC 58.037 45.455 0.00 0.00 34.29 2.17
1112 1180 5.829924 TCTTGCAAGATCTGAGTTTTTCCTT 59.170 36.000 25.16 0.00 0.00 3.36
1113 1181 6.998074 TCTTGCAAGATCTGAGTTTTTCCTTA 59.002 34.615 25.16 0.00 0.00 2.69
1117 1185 6.293462 GCAAGATCTGAGTTTTTCCTTACGTT 60.293 38.462 0.00 0.00 0.00 3.99
1119 1187 6.522054 AGATCTGAGTTTTTCCTTACGTTGA 58.478 36.000 0.00 0.00 0.00 3.18
1167 1236 1.620819 AGGAAGTGAATGACAGCGACT 59.379 47.619 0.00 0.00 0.00 4.18
1169 1238 2.413453 GGAAGTGAATGACAGCGACTTC 59.587 50.000 11.95 11.95 31.45 3.01
1171 1240 1.620819 AGTGAATGACAGCGACTTCCT 59.379 47.619 0.00 0.00 0.00 3.36
1204 1273 0.317103 CGCTATCCCGTTCTGTCGAG 60.317 60.000 0.00 0.00 0.00 4.04
1272 1341 3.423162 ATCTGCTCGCCGACTGCTC 62.423 63.158 0.01 0.00 38.05 4.26
1276 1345 3.443925 CTCGCCGACTGCTCTGGA 61.444 66.667 0.00 0.00 38.05 3.86
1314 1383 1.172180 CCGGCCACAAGCTTCTGAAA 61.172 55.000 2.24 0.00 43.05 2.69
1370 1439 2.184533 TGGACACGAAGGTATGGTCAT 58.815 47.619 0.00 0.00 0.00 3.06
1371 1440 2.569853 TGGACACGAAGGTATGGTCATT 59.430 45.455 0.00 0.00 0.00 2.57
1372 1441 2.936498 GGACACGAAGGTATGGTCATTG 59.064 50.000 0.00 0.00 0.00 2.82
1373 1442 3.369052 GGACACGAAGGTATGGTCATTGA 60.369 47.826 0.00 0.00 0.00 2.57
1374 1443 4.250464 GACACGAAGGTATGGTCATTGAA 58.750 43.478 0.00 0.00 0.00 2.69
1375 1444 4.647611 ACACGAAGGTATGGTCATTGAAA 58.352 39.130 0.00 0.00 0.00 2.69
1377 1446 4.695455 CACGAAGGTATGGTCATTGAAAGT 59.305 41.667 0.00 0.00 0.00 2.66
1380 1449 4.927267 AGGTATGGTCATTGAAAGTGGA 57.073 40.909 0.00 0.00 0.00 4.02
1381 1450 5.456921 AGGTATGGTCATTGAAAGTGGAT 57.543 39.130 0.00 0.00 0.00 3.41
1425 1600 0.323725 AATGGGATTCAGCAAGCGGT 60.324 50.000 0.00 0.00 0.00 5.68
1429 1604 0.733150 GGATTCAGCAAGCGGTTACC 59.267 55.000 0.00 0.00 0.00 2.85
1430 1605 1.679032 GGATTCAGCAAGCGGTTACCT 60.679 52.381 0.00 0.00 0.00 3.08
1432 1607 1.234615 TTCAGCAAGCGGTTACCTGC 61.235 55.000 17.47 10.72 0.00 4.85
1438 1613 0.951558 AAGCGGTTACCTGCTGTTTG 59.048 50.000 18.11 0.00 41.46 2.93
1443 1618 2.286772 CGGTTACCTGCTGTTTGTTGTC 60.287 50.000 0.00 0.00 0.00 3.18
1446 1621 2.128771 ACCTGCTGTTTGTTGTCTGT 57.871 45.000 0.00 0.00 0.00 3.41
1450 3118 3.627577 CCTGCTGTTTGTTGTCTGTACTT 59.372 43.478 0.00 0.00 0.00 2.24
1451 3119 4.260784 CCTGCTGTTTGTTGTCTGTACTTC 60.261 45.833 0.00 0.00 0.00 3.01
1453 3121 4.332543 TGCTGTTTGTTGTCTGTACTTCAG 59.667 41.667 0.00 0.00 44.85 3.02
1472 3140 7.450074 ACTTCAGAATTACTGGTATGTGTTGA 58.550 34.615 0.00 0.00 45.76 3.18
1481 3149 5.724328 ACTGGTATGTGTTGATGTCAGTAG 58.276 41.667 0.00 0.00 33.20 2.57
1491 3159 5.013079 TGTTGATGTCAGTAGACCCTTTGAT 59.987 40.000 0.00 0.00 44.33 2.57
1494 3162 5.958380 TGATGTCAGTAGACCCTTTGATAGT 59.042 40.000 0.00 0.00 44.33 2.12
1495 3163 5.661056 TGTCAGTAGACCCTTTGATAGTG 57.339 43.478 0.00 0.00 44.33 2.74
1496 3164 4.466370 TGTCAGTAGACCCTTTGATAGTGG 59.534 45.833 0.00 0.00 44.33 4.00
1501 3169 6.832384 CAGTAGACCCTTTGATAGTGGTAGTA 59.168 42.308 0.00 0.00 30.41 1.82
1508 3176 7.287235 ACCCTTTGATAGTGGTAGTACAGATAC 59.713 40.741 2.06 0.00 0.00 2.24
1510 3178 7.228108 CCTTTGATAGTGGTAGTACAGATACGA 59.772 40.741 2.06 0.00 36.33 3.43
1524 3192 4.218635 ACAGATACGAGAAAACAGAGCAGA 59.781 41.667 0.00 0.00 0.00 4.26
1847 3584 8.703378 TCTGTATGAAGTGAGATGAGATATGT 57.297 34.615 0.00 0.00 0.00 2.29
1849 3586 8.469309 TGTATGAAGTGAGATGAGATATGTCA 57.531 34.615 4.85 4.85 0.00 3.58
1913 3652 8.915057 ATATTGATTCTGTTAGATGGAAGTGG 57.085 34.615 0.00 0.00 0.00 4.00
1920 3659 9.614792 ATTCTGTTAGATGGAAGTGGTATTAAC 57.385 33.333 0.00 0.00 0.00 2.01
1986 3727 1.423794 AACACCAGGGTCCGGATTGT 61.424 55.000 7.81 1.57 0.00 2.71
2047 3788 1.081892 CAGCACTGGAGAAATCGGTG 58.918 55.000 0.00 0.00 42.63 4.94
2167 3909 3.334881 ACTCATGGGAGAAAGGATTTGGT 59.665 43.478 0.00 0.00 44.26 3.67
2184 3926 7.463618 AGGATTTGGTATCAGATATGGGAAGAT 59.536 37.037 0.00 0.00 0.00 2.40
2272 4020 1.080298 GCTCATTGGTGGTGCTTGC 60.080 57.895 0.00 0.00 0.00 4.01
2314 4079 8.964476 TTATGGAGTGTCTGATAAGATTTTCC 57.036 34.615 0.00 0.00 0.00 3.13
2316 4081 4.811557 GGAGTGTCTGATAAGATTTTCCGG 59.188 45.833 0.00 0.00 0.00 5.14
2317 4082 5.395324 GGAGTGTCTGATAAGATTTTCCGGA 60.395 44.000 0.00 0.00 0.00 5.14
2319 4084 6.051717 AGTGTCTGATAAGATTTTCCGGATG 58.948 40.000 4.15 0.00 0.00 3.51
2320 4085 5.237344 GTGTCTGATAAGATTTTCCGGATGG 59.763 44.000 4.15 0.00 0.00 3.51
2321 4086 4.214332 GTCTGATAAGATTTTCCGGATGGC 59.786 45.833 4.15 0.00 34.14 4.40
2330 4095 2.739885 TTCCGGATGGCAAAAATGTG 57.260 45.000 4.15 0.00 34.14 3.21
2331 4096 1.916506 TCCGGATGGCAAAAATGTGA 58.083 45.000 0.00 0.00 34.14 3.58
2343 4108 4.295051 CAAAAATGTGACAGGGTAAACCG 58.705 43.478 0.00 0.00 46.96 4.44
2406 4188 2.279502 TAGTTAGGCTGCTGCGGTCG 62.280 60.000 10.62 0.00 40.82 4.79
2439 4221 1.272490 TGGTATATAGCAGAGCACCGC 59.728 52.381 10.55 0.00 0.00 5.68
2496 4278 1.028330 AGACATTGCACTGGCCATCG 61.028 55.000 5.51 0.39 40.13 3.84
2514 4296 1.915350 TCGCACAAACATATCGACGTC 59.085 47.619 5.18 5.18 0.00 4.34
2583 4366 8.268850 ACTTGTCGAAAGTTTATAGCATCATT 57.731 30.769 7.04 0.00 0.00 2.57
2586 4369 6.821160 TGTCGAAAGTTTATAGCATCATTGGA 59.179 34.615 0.00 0.00 0.00 3.53
2595 4378 8.811378 GTTTATAGCATCATTGGAAGCTTTTTC 58.189 33.333 0.00 0.00 45.15 2.29
2775 4560 2.973406 CAAGGAGGGGAGGATTAGTACC 59.027 54.545 0.00 0.00 0.00 3.34
2865 4650 5.937111 ACAACTTACAGGACCAACTTGTAT 58.063 37.500 0.00 0.00 39.97 2.29
2866 4651 5.763204 ACAACTTACAGGACCAACTTGTATG 59.237 40.000 0.00 0.00 39.97 2.39
2867 4652 4.324267 ACTTACAGGACCAACTTGTATGC 58.676 43.478 0.00 0.00 39.97 3.14
2868 4653 2.949177 ACAGGACCAACTTGTATGCA 57.051 45.000 0.00 0.00 37.05 3.96
2869 4654 2.504367 ACAGGACCAACTTGTATGCAC 58.496 47.619 0.00 0.00 37.05 4.57
2870 4655 2.106511 ACAGGACCAACTTGTATGCACT 59.893 45.455 0.00 0.00 37.05 4.40
2871 4656 2.485426 CAGGACCAACTTGTATGCACTG 59.515 50.000 0.00 0.00 0.00 3.66
2872 4657 1.812571 GGACCAACTTGTATGCACTGG 59.187 52.381 0.00 4.73 0.00 4.00
2873 4658 1.200020 GACCAACTTGTATGCACTGGC 59.800 52.381 0.00 0.00 41.68 4.85
2874 4659 0.168788 CCAACTTGTATGCACTGGCG 59.831 55.000 0.00 0.00 45.35 5.69
2875 4660 0.168788 CAACTTGTATGCACTGGCGG 59.831 55.000 0.00 0.00 45.35 6.13
2876 4661 0.036164 AACTTGTATGCACTGGCGGA 59.964 50.000 0.00 0.00 45.35 5.54
2877 4662 0.391661 ACTTGTATGCACTGGCGGAG 60.392 55.000 0.00 0.00 45.35 4.63
2891 4676 4.039092 GGAGCTTCAGCCAGGCCA 62.039 66.667 8.22 0.00 43.38 5.36
2892 4677 2.034687 GAGCTTCAGCCAGGCCAA 59.965 61.111 8.22 0.00 43.38 4.52
2893 4678 1.604593 GAGCTTCAGCCAGGCCAAA 60.605 57.895 8.22 1.38 43.38 3.28
2894 4679 0.969409 GAGCTTCAGCCAGGCCAAAT 60.969 55.000 8.22 0.00 43.38 2.32
2895 4680 1.217244 GCTTCAGCCAGGCCAAATG 59.783 57.895 8.22 0.00 34.31 2.32
2896 4681 1.895238 CTTCAGCCAGGCCAAATGG 59.105 57.895 8.22 5.07 41.04 3.16
2897 4682 1.610086 TTCAGCCAGGCCAAATGGG 60.610 57.895 8.22 0.00 38.33 4.00
2932 4717 3.109230 GCACATAGCGAAAACAGTGAG 57.891 47.619 0.00 0.00 0.00 3.51
2933 4718 2.159653 GCACATAGCGAAAACAGTGAGG 60.160 50.000 0.00 0.00 0.00 3.86
2934 4719 2.416547 CACATAGCGAAAACAGTGAGGG 59.583 50.000 0.00 0.00 0.00 4.30
2935 4720 2.009774 CATAGCGAAAACAGTGAGGGG 58.990 52.381 0.00 0.00 0.00 4.79
2936 4721 1.053424 TAGCGAAAACAGTGAGGGGT 58.947 50.000 0.00 0.00 0.00 4.95
2937 4722 0.182775 AGCGAAAACAGTGAGGGGTT 59.817 50.000 0.00 0.00 0.00 4.11
2938 4723 1.418637 AGCGAAAACAGTGAGGGGTTA 59.581 47.619 0.00 0.00 0.00 2.85
2939 4724 2.158726 AGCGAAAACAGTGAGGGGTTAA 60.159 45.455 0.00 0.00 0.00 2.01
2940 4725 2.225727 GCGAAAACAGTGAGGGGTTAAG 59.774 50.000 0.00 0.00 0.00 1.85
2941 4726 3.735591 CGAAAACAGTGAGGGGTTAAGA 58.264 45.455 0.00 0.00 0.00 2.10
2942 4727 3.497262 CGAAAACAGTGAGGGGTTAAGAC 59.503 47.826 0.00 0.00 0.00 3.01
2943 4728 4.715713 GAAAACAGTGAGGGGTTAAGACT 58.284 43.478 0.00 0.00 0.00 3.24
2944 4729 5.510179 CGAAAACAGTGAGGGGTTAAGACTA 60.510 44.000 0.00 0.00 0.00 2.59
2945 4730 5.485209 AAACAGTGAGGGGTTAAGACTAG 57.515 43.478 0.00 0.00 0.00 2.57
2946 4731 3.442076 ACAGTGAGGGGTTAAGACTAGG 58.558 50.000 0.00 0.00 0.00 3.02
2947 4732 2.168728 CAGTGAGGGGTTAAGACTAGGC 59.831 54.545 0.00 0.00 0.00 3.93
2948 4733 2.044630 AGTGAGGGGTTAAGACTAGGCT 59.955 50.000 0.00 0.00 0.00 4.58
2949 4734 2.168728 GTGAGGGGTTAAGACTAGGCTG 59.831 54.545 0.00 0.00 0.00 4.85
2950 4735 1.763545 GAGGGGTTAAGACTAGGCTGG 59.236 57.143 0.00 0.00 0.00 4.85
2951 4736 0.837940 GGGGTTAAGACTAGGCTGGG 59.162 60.000 0.00 0.00 0.00 4.45
2952 4737 0.180642 GGGTTAAGACTAGGCTGGGC 59.819 60.000 0.00 0.00 0.00 5.36
2965 4750 2.766345 GCTGGGCCATGAATGAAAAA 57.234 45.000 6.72 0.00 0.00 1.94
2987 4772 8.762481 AAAAATAGTGGACTTTCCTTTGTACT 57.238 30.769 0.00 0.00 37.46 2.73
2988 4773 7.745620 AAATAGTGGACTTTCCTTTGTACTG 57.254 36.000 0.00 0.00 37.46 2.74
2989 4774 4.086706 AGTGGACTTTCCTTTGTACTGG 57.913 45.455 0.00 0.00 37.46 4.00
2990 4775 2.552743 GTGGACTTTCCTTTGTACTGGC 59.447 50.000 0.00 0.00 37.46 4.85
2991 4776 2.160205 GGACTTTCCTTTGTACTGGCC 58.840 52.381 0.00 0.00 32.53 5.36
2992 4777 2.160205 GACTTTCCTTTGTACTGGCCC 58.840 52.381 0.00 0.00 0.00 5.80
2993 4778 1.165270 CTTTCCTTTGTACTGGCCCG 58.835 55.000 0.00 0.00 0.00 6.13
2994 4779 0.891904 TTTCCTTTGTACTGGCCCGC 60.892 55.000 0.00 0.00 0.00 6.13
2995 4780 2.750237 CCTTTGTACTGGCCCGCC 60.750 66.667 0.00 0.00 0.00 6.13
2996 4781 2.750237 CTTTGTACTGGCCCGCCC 60.750 66.667 0.00 0.00 34.56 6.13
2997 4782 3.561120 CTTTGTACTGGCCCGCCCA 62.561 63.158 0.00 0.00 42.79 5.36
3006 4791 3.075005 GCCCGCCCAGAGTCTGTA 61.075 66.667 18.74 0.00 0.00 2.74
3007 4792 2.893398 CCCGCCCAGAGTCTGTAC 59.107 66.667 18.74 9.20 0.00 2.90
3008 4793 1.682684 CCCGCCCAGAGTCTGTACT 60.683 63.158 18.74 0.00 39.21 2.73
3009 4794 1.513158 CCGCCCAGAGTCTGTACTG 59.487 63.158 18.74 3.41 35.56 2.74
3010 4795 1.251527 CCGCCCAGAGTCTGTACTGT 61.252 60.000 18.74 0.00 35.56 3.55
3011 4796 1.460504 CGCCCAGAGTCTGTACTGTA 58.539 55.000 18.74 0.00 35.56 2.74
3012 4797 1.402259 CGCCCAGAGTCTGTACTGTAG 59.598 57.143 18.74 1.62 35.56 2.74
3013 4798 1.135333 GCCCAGAGTCTGTACTGTAGC 59.865 57.143 18.74 6.25 35.56 3.58
3014 4799 2.729194 CCCAGAGTCTGTACTGTAGCT 58.271 52.381 18.74 0.00 35.56 3.32
3015 4800 2.685897 CCCAGAGTCTGTACTGTAGCTC 59.314 54.545 18.74 4.41 35.56 4.09
3016 4801 2.685897 CCAGAGTCTGTACTGTAGCTCC 59.314 54.545 18.74 0.00 35.56 4.70
3017 4802 2.353269 CAGAGTCTGTACTGTAGCTCCG 59.647 54.545 12.28 5.21 35.56 4.63
3018 4803 1.064357 GAGTCTGTACTGTAGCTCCGC 59.936 57.143 0.00 0.00 35.56 5.54
3019 4804 0.100861 GTCTGTACTGTAGCTCCGCC 59.899 60.000 0.00 0.00 0.00 6.13
3020 4805 0.323087 TCTGTACTGTAGCTCCGCCA 60.323 55.000 0.00 0.00 0.00 5.69
3021 4806 0.179134 CTGTACTGTAGCTCCGCCAC 60.179 60.000 0.00 0.00 0.00 5.01
3022 4807 0.611062 TGTACTGTAGCTCCGCCACT 60.611 55.000 0.00 0.00 0.00 4.00
3023 4808 0.179134 GTACTGTAGCTCCGCCACTG 60.179 60.000 0.00 0.00 0.00 3.66
3024 4809 1.945354 TACTGTAGCTCCGCCACTGC 61.945 60.000 0.00 0.00 0.00 4.40
3025 4810 2.997315 TGTAGCTCCGCCACTGCT 60.997 61.111 0.00 0.00 40.43 4.24
3059 4844 1.277842 GTTTGGGCTATTTGTTGGGGG 59.722 52.381 0.00 0.00 0.00 5.40
3083 4868 4.402155 TGAACAACCACTTTCAGAGCATTT 59.598 37.500 0.00 0.00 0.00 2.32
3105 4890 2.495366 CTAGCCGGCGTGTTGGTACA 62.495 60.000 23.20 0.00 0.00 2.90
3118 4903 3.007940 TGTTGGTACAGGATGAGAAGGTG 59.992 47.826 0.00 0.00 42.39 4.00
3142 4927 4.584327 AACCTTTGAATGGGTTTTCTCG 57.416 40.909 2.01 0.00 42.42 4.04
3145 4930 3.191371 CCTTTGAATGGGTTTTCTCGGAG 59.809 47.826 0.00 0.00 0.00 4.63
3194 4979 3.631686 TCCACAAACAATTCTCACAGGTG 59.368 43.478 0.00 0.00 0.00 4.00
3199 4984 6.254157 CACAAACAATTCTCACAGGTGAAAAG 59.746 38.462 3.45 0.00 39.39 2.27
3208 5020 3.890756 TCACAGGTGAAAAGTGATTGCAT 59.109 39.130 0.00 0.00 37.36 3.96
3217 5029 9.369904 GGTGAAAAGTGATTGCATTGTATAATT 57.630 29.630 0.00 0.00 0.00 1.40
3222 5034 8.619146 AAGTGATTGCATTGTATAATTGAACG 57.381 30.769 0.00 0.00 0.00 3.95
3223 5035 6.692681 AGTGATTGCATTGTATAATTGAACGC 59.307 34.615 0.00 0.00 0.00 4.84
3226 5038 5.574891 TGCATTGTATAATTGAACGCCTT 57.425 34.783 0.00 0.00 0.00 4.35
3227 5039 5.960113 TGCATTGTATAATTGAACGCCTTT 58.040 33.333 0.00 0.00 0.00 3.11
3229 5041 6.033341 GCATTGTATAATTGAACGCCTTTCA 58.967 36.000 0.00 0.00 42.83 2.69
3230 5042 6.697019 GCATTGTATAATTGAACGCCTTTCAT 59.303 34.615 0.00 0.00 43.99 2.57
3232 5044 6.751514 TGTATAATTGAACGCCTTTCATGT 57.248 33.333 0.00 0.00 43.99 3.21
3233 5045 7.851387 TGTATAATTGAACGCCTTTCATGTA 57.149 32.000 0.00 0.00 43.99 2.29
3239 5051 6.603237 TTGAACGCCTTTCATGTAGATATG 57.397 37.500 0.00 0.00 43.99 1.78
3267 5079 2.651382 ACTTGGTACCCCTGTGTTTC 57.349 50.000 10.07 0.00 0.00 2.78
3293 5105 1.632422 CAAAATCGTGCAATGGAGGC 58.368 50.000 0.00 0.00 0.00 4.70
3297 5109 4.170062 CGTGCAATGGAGGCTGCG 62.170 66.667 0.35 0.00 41.63 5.18
3386 5198 3.084039 AGTCGTTGGGTCGATTGTACTA 58.916 45.455 0.00 0.00 41.78 1.82
3440 5252 7.014134 TCACAAGGTTGTTAATCACATGTTGAT 59.986 33.333 0.00 0.00 42.56 2.57
3450 5262 8.440059 GTTAATCACATGTTGATAGTTGACGAA 58.560 33.333 0.00 0.00 44.86 3.85
3522 5334 2.496070 TGAGTACATGACCCAGCTGTAC 59.504 50.000 13.81 7.48 43.47 2.90
3538 5350 1.661617 TGTACGATATGCGGCACAAAC 59.338 47.619 4.03 0.00 46.49 2.93
3581 5393 2.730069 TGTGTTCTGCGCAAAAATGAG 58.270 42.857 13.05 0.00 34.22 2.90
3675 5487 3.319405 TGTTTGTGCGGAAATACATGGTT 59.681 39.130 0.00 0.00 0.00 3.67
3676 5488 3.840890 TTGTGCGGAAATACATGGTTC 57.159 42.857 0.00 0.00 0.00 3.62
3745 5557 6.183309 CAAGAATTGTAAGCTACTGTTCCC 57.817 41.667 0.00 0.00 42.34 3.97
3746 5558 5.763876 AGAATTGTAAGCTACTGTTCCCT 57.236 39.130 0.00 0.00 0.00 4.20
3751 5563 1.208165 AAGCTACTGTTCCCTGGGGG 61.208 60.000 14.00 0.00 46.11 5.40
3772 5584 2.908688 GGGGCAACACAAGTTTTCAT 57.091 45.000 0.00 0.00 42.67 2.57
3773 5585 3.192541 GGGGCAACACAAGTTTTCATT 57.807 42.857 0.00 0.00 42.67 2.57
3774 5586 2.871633 GGGGCAACACAAGTTTTCATTG 59.128 45.455 0.00 0.00 42.67 2.82
3775 5587 3.431486 GGGGCAACACAAGTTTTCATTGA 60.431 43.478 0.00 0.00 42.67 2.57
3776 5588 4.379652 GGGCAACACAAGTTTTCATTGAT 58.620 39.130 0.00 0.00 35.28 2.57
3777 5589 5.510520 GGGGCAACACAAGTTTTCATTGATA 60.511 40.000 0.00 0.00 42.67 2.15
3778 5590 5.634859 GGGCAACACAAGTTTTCATTGATAG 59.365 40.000 0.00 0.00 35.28 2.08
3779 5591 5.634859 GGCAACACAAGTTTTCATTGATAGG 59.365 40.000 0.00 0.00 35.28 2.57
3780 5592 6.446318 GCAACACAAGTTTTCATTGATAGGA 58.554 36.000 0.00 0.00 35.28 2.94
3781 5593 7.092716 GCAACACAAGTTTTCATTGATAGGAT 58.907 34.615 0.00 0.00 35.28 3.24
3782 5594 7.062605 GCAACACAAGTTTTCATTGATAGGATG 59.937 37.037 0.00 0.00 35.28 3.51
3783 5595 7.161773 ACACAAGTTTTCATTGATAGGATGG 57.838 36.000 0.00 0.00 0.00 3.51
3784 5596 6.721208 ACACAAGTTTTCATTGATAGGATGGT 59.279 34.615 0.00 0.00 0.00 3.55
3785 5597 7.233348 ACACAAGTTTTCATTGATAGGATGGTT 59.767 33.333 0.00 0.00 0.00 3.67
3786 5598 8.090214 CACAAGTTTTCATTGATAGGATGGTTT 58.910 33.333 0.00 0.00 0.00 3.27
3787 5599 8.306761 ACAAGTTTTCATTGATAGGATGGTTTC 58.693 33.333 0.00 0.00 0.00 2.78
3788 5600 8.306038 CAAGTTTTCATTGATAGGATGGTTTCA 58.694 33.333 0.00 0.00 0.00 2.69
3789 5601 8.059798 AGTTTTCATTGATAGGATGGTTTCAG 57.940 34.615 0.00 0.00 0.00 3.02
3790 5602 7.671398 AGTTTTCATTGATAGGATGGTTTCAGT 59.329 33.333 0.00 0.00 0.00 3.41
3791 5603 7.630242 TTTCATTGATAGGATGGTTTCAGTC 57.370 36.000 0.00 0.00 0.00 3.51
3792 5604 6.566079 TCATTGATAGGATGGTTTCAGTCT 57.434 37.500 0.00 0.00 0.00 3.24
3793 5605 6.962182 TCATTGATAGGATGGTTTCAGTCTT 58.038 36.000 0.00 0.00 0.00 3.01
3794 5606 7.050377 TCATTGATAGGATGGTTTCAGTCTTC 58.950 38.462 0.00 0.00 0.00 2.87
3795 5607 6.627087 TTGATAGGATGGTTTCAGTCTTCT 57.373 37.500 0.00 0.00 0.00 2.85
3796 5608 5.982356 TGATAGGATGGTTTCAGTCTTCTG 58.018 41.667 0.00 0.00 42.54 3.02
4178 5991 5.989168 GCCCCTACAAAAATTGGCATAATAC 59.011 40.000 0.00 0.00 38.73 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 164 4.024556 GGGACTTCTGATTTGTATGCGATG 60.025 45.833 0.00 0.00 0.00 3.84
208 210 9.716507 ATACGTTTAACTGATTTCAATACATGC 57.283 29.630 0.00 0.00 0.00 4.06
322 324 7.681939 AATGCTTTTCAAATGCATCTTGAAT 57.318 28.000 24.59 14.32 45.29 2.57
526 529 7.926018 GTCCCATATGTTTTCTTTTGTCTGTTT 59.074 33.333 1.24 0.00 0.00 2.83
527 530 7.433680 GTCCCATATGTTTTCTTTTGTCTGTT 58.566 34.615 1.24 0.00 0.00 3.16
528 531 6.293955 CGTCCCATATGTTTTCTTTTGTCTGT 60.294 38.462 1.24 0.00 0.00 3.41
529 532 6.086222 CGTCCCATATGTTTTCTTTTGTCTG 58.914 40.000 1.24 0.00 0.00 3.51
530 533 5.335661 GCGTCCCATATGTTTTCTTTTGTCT 60.336 40.000 1.24 0.00 0.00 3.41
531 534 4.857037 GCGTCCCATATGTTTTCTTTTGTC 59.143 41.667 1.24 0.00 0.00 3.18
532 535 4.614993 CGCGTCCCATATGTTTTCTTTTGT 60.615 41.667 0.00 0.00 0.00 2.83
533 536 3.851403 CGCGTCCCATATGTTTTCTTTTG 59.149 43.478 0.00 0.00 0.00 2.44
534 537 3.119637 CCGCGTCCCATATGTTTTCTTTT 60.120 43.478 4.92 0.00 0.00 2.27
535 538 2.422127 CCGCGTCCCATATGTTTTCTTT 59.578 45.455 4.92 0.00 0.00 2.52
536 539 2.014128 CCGCGTCCCATATGTTTTCTT 58.986 47.619 4.92 0.00 0.00 2.52
537 540 1.208535 TCCGCGTCCCATATGTTTTCT 59.791 47.619 4.92 0.00 0.00 2.52
538 541 1.597663 CTCCGCGTCCCATATGTTTTC 59.402 52.381 4.92 0.00 0.00 2.29
539 542 1.663695 CTCCGCGTCCCATATGTTTT 58.336 50.000 4.92 0.00 0.00 2.43
540 543 0.179056 CCTCCGCGTCCCATATGTTT 60.179 55.000 4.92 0.00 0.00 2.83
541 544 1.046472 TCCTCCGCGTCCCATATGTT 61.046 55.000 4.92 0.00 0.00 2.71
542 545 1.046472 TTCCTCCGCGTCCCATATGT 61.046 55.000 4.92 0.00 0.00 2.29
543 546 0.321671 ATTCCTCCGCGTCCCATATG 59.678 55.000 4.92 0.00 0.00 1.78
544 547 1.056660 AATTCCTCCGCGTCCCATAT 58.943 50.000 4.92 0.00 0.00 1.78
545 548 0.105964 CAATTCCTCCGCGTCCCATA 59.894 55.000 4.92 0.00 0.00 2.74
546 549 1.153168 CAATTCCTCCGCGTCCCAT 60.153 57.895 4.92 0.00 0.00 4.00
547 550 1.622607 ATCAATTCCTCCGCGTCCCA 61.623 55.000 4.92 0.00 0.00 4.37
548 551 0.880718 GATCAATTCCTCCGCGTCCC 60.881 60.000 4.92 0.00 0.00 4.46
568 571 1.301244 CGAGACCACTGCAGCTTGT 60.301 57.895 15.27 8.47 0.00 3.16
570 573 0.679505 TAACGAGACCACTGCAGCTT 59.320 50.000 15.27 0.00 0.00 3.74
574 577 1.893137 ACAGATAACGAGACCACTGCA 59.107 47.619 0.00 0.00 0.00 4.41
575 578 2.531206 GACAGATAACGAGACCACTGC 58.469 52.381 0.00 0.00 0.00 4.40
576 579 2.159226 GGGACAGATAACGAGACCACTG 60.159 54.545 0.00 0.00 0.00 3.66
577 580 2.100989 GGGACAGATAACGAGACCACT 58.899 52.381 0.00 0.00 0.00 4.00
578 581 1.202268 CGGGACAGATAACGAGACCAC 60.202 57.143 0.00 0.00 0.00 4.16
579 582 1.100510 CGGGACAGATAACGAGACCA 58.899 55.000 0.00 0.00 0.00 4.02
581 584 0.248949 GGCGGGACAGATAACGAGAC 60.249 60.000 0.00 0.00 0.00 3.36
587 590 2.702592 ATTTTCGGCGGGACAGATAA 57.297 45.000 7.21 0.00 0.00 1.75
588 591 2.547218 GCTATTTTCGGCGGGACAGATA 60.547 50.000 7.21 0.00 0.00 1.98
601 604 3.901667 ACGAATCACGACGCTATTTTC 57.098 42.857 0.00 0.00 45.77 2.29
604 607 3.430895 ACAAAACGAATCACGACGCTATT 59.569 39.130 0.00 0.00 45.77 1.73
608 611 1.305482 CACAAAACGAATCACGACGC 58.695 50.000 0.00 0.00 45.77 5.19
628 631 2.190578 CACCGGCCCCATCTCTTC 59.809 66.667 0.00 0.00 0.00 2.87
656 659 1.808411 TCTCATTTCCACGTTGGCTC 58.192 50.000 0.00 0.00 37.47 4.70
659 683 2.778299 TCCTTCTCATTTCCACGTTGG 58.222 47.619 0.00 0.00 39.43 3.77
662 686 5.070001 TCATTTTCCTTCTCATTTCCACGT 58.930 37.500 0.00 0.00 0.00 4.49
675 699 6.040955 GTCCAGGAGTTTTTCTCATTTTCCTT 59.959 38.462 0.00 0.00 44.40 3.36
683 707 1.766496 ACCGTCCAGGAGTTTTTCTCA 59.234 47.619 0.00 0.00 44.40 3.27
699 724 1.671054 CGCAATTCAGGTCCACCGT 60.671 57.895 0.00 0.00 42.08 4.83
713 738 0.459585 GGCCTCGAATAGTGACGCAA 60.460 55.000 0.00 0.00 0.00 4.85
719 744 0.249073 CTCCACGGCCTCGAATAGTG 60.249 60.000 0.00 0.00 40.11 2.74
720 745 0.395311 TCTCCACGGCCTCGAATAGT 60.395 55.000 0.00 0.00 40.11 2.12
721 746 0.962489 ATCTCCACGGCCTCGAATAG 59.038 55.000 0.00 0.00 40.11 1.73
767 792 2.480419 CACGGACCAGAATTTCACTGAC 59.520 50.000 0.00 0.00 37.54 3.51
769 794 2.766313 TCACGGACCAGAATTTCACTG 58.234 47.619 0.00 0.00 35.43 3.66
770 795 3.703001 ATCACGGACCAGAATTTCACT 57.297 42.857 0.00 0.00 0.00 3.41
772 797 4.014569 TGAATCACGGACCAGAATTTCA 57.985 40.909 0.00 0.00 0.00 2.69
801 826 1.001158 TGCATCACAGTGACGTCGTTA 60.001 47.619 11.62 0.00 0.00 3.18
823 848 2.773087 ACCTACCCCACGTATGCATTTA 59.227 45.455 3.54 0.00 0.00 1.40
831 856 0.752743 CGATCCACCTACCCCACGTA 60.753 60.000 0.00 0.00 0.00 3.57
870 895 8.677870 ATAATAGCAATCCAGACTAGGAGATT 57.322 34.615 0.00 0.00 41.90 2.40
885 910 4.310769 GAGACGCTGTGGATAATAGCAAT 58.689 43.478 0.00 0.00 37.29 3.56
886 911 3.717707 GAGACGCTGTGGATAATAGCAA 58.282 45.455 0.00 0.00 37.29 3.91
889 914 2.922758 GCCGAGACGCTGTGGATAATAG 60.923 54.545 0.00 0.00 0.00 1.73
915 940 1.766143 CTAAGTGATGAAGCCGCCGC 61.766 60.000 0.00 0.00 0.00 6.53
916 941 1.154205 CCTAAGTGATGAAGCCGCCG 61.154 60.000 0.00 0.00 0.00 6.46
921 946 1.398390 CGCAACCCTAAGTGATGAAGC 59.602 52.381 0.00 0.00 0.00 3.86
922 947 2.009774 CCGCAACCCTAAGTGATGAAG 58.990 52.381 0.00 0.00 0.00 3.02
923 948 1.349688 ACCGCAACCCTAAGTGATGAA 59.650 47.619 0.00 0.00 0.00 2.57
924 949 0.981183 ACCGCAACCCTAAGTGATGA 59.019 50.000 0.00 0.00 0.00 2.92
953 978 2.159819 CTATGGGATGGAGCCGTCGG 62.160 65.000 6.99 6.99 33.03 4.79
956 981 1.235989 TCCTATGGGATGGAGCCGT 59.764 57.895 0.00 0.00 36.57 5.68
969 994 1.069765 CGCCTCACCGCAATCCTAT 59.930 57.895 0.00 0.00 0.00 2.57
974 999 4.778143 GACCCGCCTCACCGCAAT 62.778 66.667 0.00 0.00 0.00 3.56
1041 1104 1.604593 CCAAGCAGTCACAAGGGGG 60.605 63.158 0.00 0.00 0.00 5.40
1068 1132 9.624697 TGCAAGAACTACAAATGAAATCAATAC 57.375 29.630 0.00 0.00 0.00 1.89
1078 1142 7.094890 ACTCAGATCTTGCAAGAACTACAAATG 60.095 37.037 31.42 21.36 36.20 2.32
1112 1180 3.799366 ACTGTTGGAACACATCAACGTA 58.201 40.909 0.00 0.00 44.28 3.57
1113 1181 2.639065 ACTGTTGGAACACATCAACGT 58.361 42.857 0.00 0.00 44.28 3.99
1117 1185 4.055360 CGTTCTACTGTTGGAACACATCA 58.945 43.478 18.92 0.00 41.05 3.07
1119 1187 2.806244 GCGTTCTACTGTTGGAACACAT 59.194 45.455 18.92 0.00 41.05 3.21
1167 1236 1.139058 GCGAAGAGGCTCCATTAGGAA 59.861 52.381 11.71 0.00 45.19 3.36
1169 1238 0.755686 AGCGAAGAGGCTCCATTAGG 59.244 55.000 11.71 0.00 39.61 2.69
1171 1240 2.563179 GGATAGCGAAGAGGCTCCATTA 59.437 50.000 11.71 0.00 43.54 1.90
1272 1341 0.961753 GCACCCTTTCCTGTTTCCAG 59.038 55.000 0.00 0.00 38.50 3.86
1276 1345 1.692411 GTCTGCACCCTTTCCTGTTT 58.308 50.000 0.00 0.00 0.00 2.83
1314 1383 5.122396 GCGGATCAACTTGTTCTATTGAGTT 59.878 40.000 0.00 0.00 35.89 3.01
1393 1527 7.560991 TGCTGAATCCCATTTCAACAACTATAT 59.439 33.333 0.00 0.00 35.31 0.86
1396 1530 5.076182 TGCTGAATCCCATTTCAACAACTA 58.924 37.500 0.00 0.00 35.31 2.24
1420 1595 0.179029 ACAAACAGCAGGTAACCGCT 60.179 50.000 0.00 0.00 34.78 5.52
1425 1600 3.616219 ACAGACAACAAACAGCAGGTAA 58.384 40.909 0.00 0.00 0.00 2.85
1429 1604 4.332543 TGAAGTACAGACAACAAACAGCAG 59.667 41.667 0.00 0.00 0.00 4.24
1430 1605 4.257731 TGAAGTACAGACAACAAACAGCA 58.742 39.130 0.00 0.00 0.00 4.41
1443 1618 8.035394 ACACATACCAGTAATTCTGAAGTACAG 58.965 37.037 24.48 18.24 46.27 2.74
1446 1621 8.590204 TCAACACATACCAGTAATTCTGAAGTA 58.410 33.333 0.00 0.00 46.27 2.24
1450 3118 7.394016 ACATCAACACATACCAGTAATTCTGA 58.606 34.615 6.50 0.00 46.27 3.27
1451 3119 7.334171 TGACATCAACACATACCAGTAATTCTG 59.666 37.037 0.00 0.00 43.27 3.02
1453 3121 7.334421 ACTGACATCAACACATACCAGTAATTC 59.666 37.037 0.00 0.00 32.58 2.17
1459 3127 5.807520 GTCTACTGACATCAACACATACCAG 59.192 44.000 0.00 0.00 42.48 4.00
1461 3129 5.109903 GGTCTACTGACATCAACACATACC 58.890 45.833 0.00 0.00 44.61 2.73
1462 3130 5.105310 AGGGTCTACTGACATCAACACATAC 60.105 44.000 0.00 0.00 44.61 2.39
1464 3132 3.840666 AGGGTCTACTGACATCAACACAT 59.159 43.478 0.00 0.00 44.61 3.21
1465 3133 3.239449 AGGGTCTACTGACATCAACACA 58.761 45.455 0.00 0.00 44.61 3.72
1466 3134 3.963428 AGGGTCTACTGACATCAACAC 57.037 47.619 0.00 0.00 44.61 3.32
1467 3135 4.346709 TCAAAGGGTCTACTGACATCAACA 59.653 41.667 0.00 0.00 44.61 3.33
1472 3140 5.129485 CCACTATCAAAGGGTCTACTGACAT 59.871 44.000 0.00 0.00 44.61 3.06
1481 3149 5.655532 TCTGTACTACCACTATCAAAGGGTC 59.344 44.000 0.00 0.00 32.77 4.46
1491 3159 7.607607 TGTTTTCTCGTATCTGTACTACCACTA 59.392 37.037 0.00 0.00 0.00 2.74
1494 3162 6.656270 TCTGTTTTCTCGTATCTGTACTACCA 59.344 38.462 0.00 0.00 0.00 3.25
1495 3163 7.081526 TCTGTTTTCTCGTATCTGTACTACC 57.918 40.000 0.00 0.00 0.00 3.18
1496 3164 6.687958 GCTCTGTTTTCTCGTATCTGTACTAC 59.312 42.308 0.00 0.00 0.00 2.73
1501 3169 4.218635 TCTGCTCTGTTTTCTCGTATCTGT 59.781 41.667 0.00 0.00 0.00 3.41
1508 3176 2.748605 ACTGTCTGCTCTGTTTTCTCG 58.251 47.619 0.00 0.00 0.00 4.04
1510 3178 4.142609 TGAACTGTCTGCTCTGTTTTCT 57.857 40.909 0.00 0.00 31.56 2.52
1821 3558 9.311676 ACATATCTCATCTCACTTCATACAGAT 57.688 33.333 0.00 0.00 0.00 2.90
1822 3559 8.703378 ACATATCTCATCTCACTTCATACAGA 57.297 34.615 0.00 0.00 0.00 3.41
1823 3560 8.574737 TGACATATCTCATCTCACTTCATACAG 58.425 37.037 0.00 0.00 0.00 2.74
1824 3561 8.469309 TGACATATCTCATCTCACTTCATACA 57.531 34.615 0.00 0.00 0.00 2.29
1825 3562 9.755804 TTTGACATATCTCATCTCACTTCATAC 57.244 33.333 0.00 0.00 0.00 2.39
1868 3606 9.889128 TCAATATCATCTTGATTCACACAGTTA 57.111 29.630 0.00 0.00 38.26 2.24
1892 3631 5.762179 ACCACTTCCATCTAACAGAATCA 57.238 39.130 0.00 0.00 0.00 2.57
1906 3645 6.646267 TGTATGACCAGTTAATACCACTTCC 58.354 40.000 0.00 0.00 0.00 3.46
1910 3649 8.677148 ATTCATGTATGACCAGTTAATACCAC 57.323 34.615 0.00 0.00 36.36 4.16
1954 3694 2.292267 CTGGTGTTCCCATCAGCATAC 58.708 52.381 0.00 0.00 42.61 2.39
1966 3706 0.676782 CAATCCGGACCCTGGTGTTC 60.677 60.000 6.12 0.00 0.00 3.18
1969 3710 0.178068 CTACAATCCGGACCCTGGTG 59.822 60.000 6.12 0.57 0.00 4.17
1971 3712 1.146263 GCTACAATCCGGACCCTGG 59.854 63.158 6.12 0.00 0.00 4.45
1986 3727 4.415150 GCCCTGGTGCAGCAGCTA 62.415 66.667 34.98 6.94 42.74 3.32
2167 3909 7.473593 TGAGTCTGATCTTCCCATATCTGATA 58.526 38.462 0.00 0.00 34.11 2.15
2294 4058 5.661458 TCCGGAAAATCTTATCAGACACTC 58.339 41.667 0.00 0.00 0.00 3.51
2314 4079 2.598589 CTGTCACATTTTTGCCATCCG 58.401 47.619 0.00 0.00 0.00 4.18
2316 4081 2.299867 ACCCTGTCACATTTTTGCCATC 59.700 45.455 0.00 0.00 0.00 3.51
2317 4082 2.328319 ACCCTGTCACATTTTTGCCAT 58.672 42.857 0.00 0.00 0.00 4.40
2319 4084 4.055360 GTTTACCCTGTCACATTTTTGCC 58.945 43.478 0.00 0.00 0.00 4.52
2320 4085 4.055360 GGTTTACCCTGTCACATTTTTGC 58.945 43.478 0.00 0.00 0.00 3.68
2321 4086 4.036971 TCGGTTTACCCTGTCACATTTTTG 59.963 41.667 0.00 0.00 0.00 2.44
2330 4095 1.636988 CACGATCGGTTTACCCTGTC 58.363 55.000 20.98 0.00 0.00 3.51
2331 4096 0.248289 CCACGATCGGTTTACCCTGT 59.752 55.000 20.98 0.00 0.00 4.00
2343 4108 4.288670 TGAACGAGTATTCTCCACGATC 57.711 45.455 0.00 0.00 37.40 3.69
2406 4188 7.125811 TCTGCTATATACCACCCATTATCCTTC 59.874 40.741 0.00 0.00 0.00 3.46
2439 4221 0.667487 ATGAGTGGTTGTGCTCGTCG 60.667 55.000 0.00 0.00 34.67 5.12
2496 4278 3.855379 TGTAGACGTCGATATGTTTGTGC 59.145 43.478 10.46 0.00 0.00 4.57
2514 4296 3.373439 GCTTCACCAAATCTCTGCTGTAG 59.627 47.826 0.00 0.00 0.00 2.74
2583 4366 3.756434 CCATCTTACCGAAAAAGCTTCCA 59.244 43.478 0.00 0.00 0.00 3.53
2586 4369 4.906618 TCTCCATCTTACCGAAAAAGCTT 58.093 39.130 0.00 0.00 0.00 3.74
2595 4378 3.639538 CGGTACATTCTCCATCTTACCG 58.360 50.000 3.80 3.80 44.16 4.02
2775 4560 0.324552 TCCCATTTGCCCACATGAGG 60.325 55.000 0.00 0.00 0.00 3.86
2805 4590 3.057734 GTCACCGAAGAAAGTGTACTGG 58.942 50.000 0.00 0.00 35.45 4.00
2865 4650 3.889134 CTGAAGCTCCGCCAGTGCA 62.889 63.158 0.00 0.00 37.44 4.57
2866 4651 3.123620 CTGAAGCTCCGCCAGTGC 61.124 66.667 0.00 0.00 35.13 4.40
2867 4652 3.123620 GCTGAAGCTCCGCCAGTG 61.124 66.667 0.00 0.00 38.21 3.66
2868 4653 4.400961 GGCTGAAGCTCCGCCAGT 62.401 66.667 14.03 0.00 43.25 4.00
2874 4659 3.574074 TTGGCCTGGCTGAAGCTCC 62.574 63.158 19.68 0.00 41.70 4.70
2875 4660 0.969409 ATTTGGCCTGGCTGAAGCTC 60.969 55.000 19.68 0.00 41.70 4.09
2876 4661 1.077985 ATTTGGCCTGGCTGAAGCT 59.922 52.632 19.68 1.20 41.70 3.74
2877 4662 1.217244 CATTTGGCCTGGCTGAAGC 59.783 57.895 19.68 1.35 41.14 3.86
2878 4663 1.610554 CCCATTTGGCCTGGCTGAAG 61.611 60.000 19.68 5.26 32.08 3.02
2879 4664 1.610086 CCCATTTGGCCTGGCTGAA 60.610 57.895 19.68 13.60 32.08 3.02
2880 4665 2.037687 CCCATTTGGCCTGGCTGA 59.962 61.111 19.68 4.44 32.08 4.26
2905 4690 4.529219 TCGCTATGTGCTGGGCGG 62.529 66.667 6.36 0.00 46.31 6.13
2907 4692 0.179163 GTTTTCGCTATGTGCTGGGC 60.179 55.000 0.00 0.00 40.11 5.36
2908 4693 1.131126 CTGTTTTCGCTATGTGCTGGG 59.869 52.381 0.00 0.00 40.11 4.45
2909 4694 1.806542 ACTGTTTTCGCTATGTGCTGG 59.193 47.619 0.00 0.00 40.11 4.85
2910 4695 2.480037 TCACTGTTTTCGCTATGTGCTG 59.520 45.455 0.00 0.00 40.11 4.41
2911 4696 2.738846 CTCACTGTTTTCGCTATGTGCT 59.261 45.455 0.00 0.00 40.11 4.40
2912 4697 2.159653 CCTCACTGTTTTCGCTATGTGC 60.160 50.000 0.00 0.00 38.57 4.57
2913 4698 2.416547 CCCTCACTGTTTTCGCTATGTG 59.583 50.000 0.00 0.00 0.00 3.21
2914 4699 2.615493 CCCCTCACTGTTTTCGCTATGT 60.615 50.000 0.00 0.00 0.00 2.29
2915 4700 2.009774 CCCCTCACTGTTTTCGCTATG 58.990 52.381 0.00 0.00 0.00 2.23
2916 4701 1.628846 ACCCCTCACTGTTTTCGCTAT 59.371 47.619 0.00 0.00 0.00 2.97
2917 4702 1.053424 ACCCCTCACTGTTTTCGCTA 58.947 50.000 0.00 0.00 0.00 4.26
2918 4703 0.182775 AACCCCTCACTGTTTTCGCT 59.817 50.000 0.00 0.00 0.00 4.93
2919 4704 1.886886 TAACCCCTCACTGTTTTCGC 58.113 50.000 0.00 0.00 0.00 4.70
2920 4705 3.497262 GTCTTAACCCCTCACTGTTTTCG 59.503 47.826 0.00 0.00 0.00 3.46
2921 4706 4.715713 AGTCTTAACCCCTCACTGTTTTC 58.284 43.478 0.00 0.00 0.00 2.29
2922 4707 4.790718 AGTCTTAACCCCTCACTGTTTT 57.209 40.909 0.00 0.00 0.00 2.43
2923 4708 4.286291 CCTAGTCTTAACCCCTCACTGTTT 59.714 45.833 0.00 0.00 0.00 2.83
2924 4709 3.838903 CCTAGTCTTAACCCCTCACTGTT 59.161 47.826 0.00 0.00 0.00 3.16
2925 4710 3.442076 CCTAGTCTTAACCCCTCACTGT 58.558 50.000 0.00 0.00 0.00 3.55
2926 4711 2.168728 GCCTAGTCTTAACCCCTCACTG 59.831 54.545 0.00 0.00 0.00 3.66
2927 4712 2.044630 AGCCTAGTCTTAACCCCTCACT 59.955 50.000 0.00 0.00 0.00 3.41
2928 4713 2.168728 CAGCCTAGTCTTAACCCCTCAC 59.831 54.545 0.00 0.00 0.00 3.51
2929 4714 2.467880 CAGCCTAGTCTTAACCCCTCA 58.532 52.381 0.00 0.00 0.00 3.86
2930 4715 1.763545 CCAGCCTAGTCTTAACCCCTC 59.236 57.143 0.00 0.00 0.00 4.30
2931 4716 1.625508 CCCAGCCTAGTCTTAACCCCT 60.626 57.143 0.00 0.00 0.00 4.79
2932 4717 0.837940 CCCAGCCTAGTCTTAACCCC 59.162 60.000 0.00 0.00 0.00 4.95
2933 4718 0.180642 GCCCAGCCTAGTCTTAACCC 59.819 60.000 0.00 0.00 0.00 4.11
2934 4719 0.180642 GGCCCAGCCTAGTCTTAACC 59.819 60.000 0.00 0.00 46.69 2.85
2935 4720 3.782632 GGCCCAGCCTAGTCTTAAC 57.217 57.895 0.00 0.00 46.69 2.01
2946 4731 2.766345 TTTTTCATTCATGGCCCAGC 57.234 45.000 0.00 0.00 0.00 4.85
2962 4747 8.630037 CAGTACAAAGGAAAGTCCACTATTTTT 58.370 33.333 0.00 0.00 39.61 1.94
2963 4748 7.230712 CCAGTACAAAGGAAAGTCCACTATTTT 59.769 37.037 0.00 0.00 39.61 1.82
2964 4749 6.715264 CCAGTACAAAGGAAAGTCCACTATTT 59.285 38.462 0.00 0.00 39.61 1.40
2965 4750 6.238648 CCAGTACAAAGGAAAGTCCACTATT 58.761 40.000 0.00 0.00 39.61 1.73
2966 4751 5.803470 GCCAGTACAAAGGAAAGTCCACTAT 60.803 44.000 0.00 0.00 39.61 2.12
2967 4752 4.504340 GCCAGTACAAAGGAAAGTCCACTA 60.504 45.833 0.00 0.00 39.61 2.74
2968 4753 3.747708 GCCAGTACAAAGGAAAGTCCACT 60.748 47.826 0.00 0.00 39.61 4.00
2969 4754 2.552743 GCCAGTACAAAGGAAAGTCCAC 59.447 50.000 0.00 0.00 39.61 4.02
2970 4755 2.488347 GGCCAGTACAAAGGAAAGTCCA 60.488 50.000 0.00 0.00 39.61 4.02
2971 4756 2.160205 GGCCAGTACAAAGGAAAGTCC 58.840 52.381 0.00 0.00 36.58 3.85
2972 4757 2.160205 GGGCCAGTACAAAGGAAAGTC 58.840 52.381 4.39 0.00 0.00 3.01
2973 4758 1.544759 CGGGCCAGTACAAAGGAAAGT 60.545 52.381 4.39 0.00 0.00 2.66
2974 4759 1.165270 CGGGCCAGTACAAAGGAAAG 58.835 55.000 4.39 0.00 0.00 2.62
2975 4760 0.891904 GCGGGCCAGTACAAAGGAAA 60.892 55.000 4.39 0.00 0.00 3.13
2976 4761 1.302993 GCGGGCCAGTACAAAGGAA 60.303 57.895 4.39 0.00 0.00 3.36
2977 4762 2.349755 GCGGGCCAGTACAAAGGA 59.650 61.111 4.39 0.00 0.00 3.36
2978 4763 2.750237 GGCGGGCCAGTACAAAGG 60.750 66.667 4.39 0.00 35.81 3.11
2979 4764 2.750237 GGGCGGGCCAGTACAAAG 60.750 66.667 16.76 0.00 37.98 2.77
2980 4765 3.561120 CTGGGCGGGCCAGTACAAA 62.561 63.158 35.27 8.31 37.98 2.83
2981 4766 4.028490 CTGGGCGGGCCAGTACAA 62.028 66.667 35.27 9.03 37.98 2.41
2983 4768 4.162690 CTCTGGGCGGGCCAGTAC 62.163 72.222 39.30 8.98 37.98 2.73
2984 4769 4.715130 ACTCTGGGCGGGCCAGTA 62.715 66.667 39.30 27.71 37.98 2.74
2989 4774 3.075005 TACAGACTCTGGGCGGGC 61.075 66.667 10.86 0.00 35.51 6.13
2990 4775 1.682684 AGTACAGACTCTGGGCGGG 60.683 63.158 10.86 0.00 35.51 6.13
2991 4776 1.251527 ACAGTACAGACTCTGGGCGG 61.252 60.000 10.86 5.99 35.51 6.13
2992 4777 1.402259 CTACAGTACAGACTCTGGGCG 59.598 57.143 10.86 0.00 35.51 6.13
2993 4778 1.135333 GCTACAGTACAGACTCTGGGC 59.865 57.143 10.86 2.96 35.51 5.36
2994 4779 2.685897 GAGCTACAGTACAGACTCTGGG 59.314 54.545 10.86 0.28 35.51 4.45
2995 4780 2.685897 GGAGCTACAGTACAGACTCTGG 59.314 54.545 10.86 0.00 35.51 3.86
2996 4781 2.353269 CGGAGCTACAGTACAGACTCTG 59.647 54.545 4.36 4.36 37.52 3.35
2997 4782 2.634600 CGGAGCTACAGTACAGACTCT 58.365 52.381 0.00 0.00 31.73 3.24
3017 4802 1.202222 GCATGTCATACAAGCAGTGGC 60.202 52.381 2.65 0.00 41.89 5.01
3018 4803 1.402968 GGCATGTCATACAAGCAGTGG 59.597 52.381 9.19 0.00 43.85 4.00
3019 4804 1.063027 CGGCATGTCATACAAGCAGTG 59.937 52.381 9.19 0.00 43.85 3.66
3020 4805 1.339055 ACGGCATGTCATACAAGCAGT 60.339 47.619 9.19 8.14 43.90 4.40
3021 4806 1.372582 ACGGCATGTCATACAAGCAG 58.627 50.000 9.19 7.55 43.85 4.24
3022 4807 1.819928 AACGGCATGTCATACAAGCA 58.180 45.000 9.19 0.00 43.85 3.91
3023 4808 2.518949 CAAACGGCATGTCATACAAGC 58.481 47.619 0.00 0.00 41.60 4.01
3024 4809 2.159393 CCCAAACGGCATGTCATACAAG 60.159 50.000 0.00 0.00 0.00 3.16
3025 4810 1.815613 CCCAAACGGCATGTCATACAA 59.184 47.619 0.00 0.00 0.00 2.41
3048 4833 1.765904 GGTTGTTCACCCCCAACAAAT 59.234 47.619 0.00 0.00 43.59 2.32
3059 4844 2.682856 TGCTCTGAAAGTGGTTGTTCAC 59.317 45.455 0.00 0.00 37.89 3.18
3083 4868 1.079681 CCAACACGCCGGCTAGTAA 60.080 57.895 26.68 0.00 0.00 2.24
3142 4927 2.025887 ACCCATCATCCTCACAAACTCC 60.026 50.000 0.00 0.00 0.00 3.85
3145 4930 2.094675 CCACCCATCATCCTCACAAAC 58.905 52.381 0.00 0.00 0.00 2.93
3199 4984 6.074888 GGCGTTCAATTATACAATGCAATCAC 60.075 38.462 0.00 0.00 34.31 3.06
3217 5029 6.406961 AGACATATCTACATGAAAGGCGTTCA 60.407 38.462 17.84 17.84 41.27 3.18
3221 5033 6.923508 TGTTAGACATATCTACATGAAAGGCG 59.076 38.462 0.00 0.00 37.15 5.52
3222 5034 8.839310 ATGTTAGACATATCTACATGAAAGGC 57.161 34.615 0.00 0.00 36.99 4.35
3267 5079 0.040514 TTGCACGATTTTGGTCTGCG 60.041 50.000 0.00 0.00 0.00 5.18
3293 5105 1.193203 GCATCACATTCCGTATCGCAG 59.807 52.381 0.00 0.00 0.00 5.18
3297 5109 2.061773 CTCGGCATCACATTCCGTATC 58.938 52.381 0.00 0.00 43.35 2.24
3345 5157 3.391296 ACTCCTTTGCCTTCTTGAGTACA 59.609 43.478 0.00 0.00 31.70 2.90
3351 5163 1.884235 ACGACTCCTTTGCCTTCTTG 58.116 50.000 0.00 0.00 0.00 3.02
3386 5198 4.978099 TGCTTGGAAATCACTCTTCTTCT 58.022 39.130 0.00 0.00 0.00 2.85
3440 5252 4.637276 TGCCTCTTCAAATTCGTCAACTA 58.363 39.130 0.00 0.00 0.00 2.24
3450 5262 3.766051 GGAACTTCCATGCCTCTTCAAAT 59.234 43.478 2.62 0.00 36.28 2.32
3522 5334 1.011242 CCGTTTGTGCCGCATATCG 60.011 57.895 0.00 2.49 38.08 2.92
3560 5372 3.243501 ACTCATTTTTGCGCAGAACACAT 60.244 39.130 13.57 1.52 0.00 3.21
3604 5416 8.743085 ATGTAGTTCTTCAGCATATGATTTGT 57.257 30.769 6.97 0.00 37.89 2.83
3609 5421 7.210174 GTGGTATGTAGTTCTTCAGCATATGA 58.790 38.462 6.97 0.00 35.62 2.15
3675 5487 1.945819 GCTTCCCTGTCGAATTGCAGA 60.946 52.381 2.52 0.00 34.87 4.26
3676 5488 0.449388 GCTTCCCTGTCGAATTGCAG 59.551 55.000 0.00 0.00 0.00 4.41
3754 5566 3.791245 TCAATGAAAACTTGTGTTGCCC 58.209 40.909 0.00 0.00 36.39 5.36
3755 5567 5.634859 CCTATCAATGAAAACTTGTGTTGCC 59.365 40.000 0.00 0.00 36.39 4.52
3756 5568 6.446318 TCCTATCAATGAAAACTTGTGTTGC 58.554 36.000 0.00 0.00 36.39 4.17
3757 5569 7.543172 CCATCCTATCAATGAAAACTTGTGTTG 59.457 37.037 0.00 0.00 36.39 3.33
3758 5570 7.233348 ACCATCCTATCAATGAAAACTTGTGTT 59.767 33.333 0.00 0.00 38.16 3.32
3759 5571 6.721208 ACCATCCTATCAATGAAAACTTGTGT 59.279 34.615 0.00 0.00 0.00 3.72
3760 5572 7.161773 ACCATCCTATCAATGAAAACTTGTG 57.838 36.000 0.00 0.00 0.00 3.33
3761 5573 7.781324 AACCATCCTATCAATGAAAACTTGT 57.219 32.000 0.00 0.00 0.00 3.16
3762 5574 8.306038 TGAAACCATCCTATCAATGAAAACTTG 58.694 33.333 0.00 0.00 0.00 3.16
3763 5575 8.421249 TGAAACCATCCTATCAATGAAAACTT 57.579 30.769 0.00 0.00 0.00 2.66
3764 5576 7.671398 ACTGAAACCATCCTATCAATGAAAACT 59.329 33.333 0.00 0.00 0.00 2.66
3765 5577 7.830739 ACTGAAACCATCCTATCAATGAAAAC 58.169 34.615 0.00 0.00 0.00 2.43
3766 5578 7.890127 AGACTGAAACCATCCTATCAATGAAAA 59.110 33.333 0.00 0.00 0.00 2.29
3767 5579 7.405292 AGACTGAAACCATCCTATCAATGAAA 58.595 34.615 0.00 0.00 0.00 2.69
3768 5580 6.962182 AGACTGAAACCATCCTATCAATGAA 58.038 36.000 0.00 0.00 0.00 2.57
3769 5581 6.566079 AGACTGAAACCATCCTATCAATGA 57.434 37.500 0.00 0.00 0.00 2.57
3770 5582 7.012138 CAGAAGACTGAAACCATCCTATCAATG 59.988 40.741 0.00 0.00 46.03 2.82
3771 5583 7.052873 CAGAAGACTGAAACCATCCTATCAAT 58.947 38.462 0.00 0.00 46.03 2.57
3772 5584 6.409704 CAGAAGACTGAAACCATCCTATCAA 58.590 40.000 0.00 0.00 46.03 2.57
3773 5585 5.982356 CAGAAGACTGAAACCATCCTATCA 58.018 41.667 0.00 0.00 46.03 2.15
3787 5599 5.911752 ACAGTTAGGCATATCAGAAGACTG 58.088 41.667 3.33 3.33 44.66 3.51
3788 5600 5.658634 TGACAGTTAGGCATATCAGAAGACT 59.341 40.000 0.00 0.00 0.00 3.24
3789 5601 5.751028 GTGACAGTTAGGCATATCAGAAGAC 59.249 44.000 0.00 0.00 37.77 3.01
3790 5602 5.422012 TGTGACAGTTAGGCATATCAGAAGA 59.578 40.000 0.00 0.00 37.77 2.87
3791 5603 5.664457 TGTGACAGTTAGGCATATCAGAAG 58.336 41.667 0.00 0.00 37.77 2.85
3792 5604 5.675684 TGTGACAGTTAGGCATATCAGAA 57.324 39.130 0.00 0.00 37.77 3.02
3793 5605 5.876651 ATGTGACAGTTAGGCATATCAGA 57.123 39.130 0.00 0.00 37.77 3.27
3797 5609 3.976654 AGGGATGTGACAGTTAGGCATAT 59.023 43.478 0.00 0.00 40.18 1.78
3798 5610 3.384168 AGGGATGTGACAGTTAGGCATA 58.616 45.455 0.00 0.00 37.77 3.14
3799 5611 2.200081 AGGGATGTGACAGTTAGGCAT 58.800 47.619 0.00 0.00 37.77 4.40
3800 5612 1.656587 AGGGATGTGACAGTTAGGCA 58.343 50.000 0.00 0.00 0.00 4.75
3801 5613 2.766828 ACTAGGGATGTGACAGTTAGGC 59.233 50.000 0.00 0.00 0.00 3.93
3802 5614 4.098654 CAGACTAGGGATGTGACAGTTAGG 59.901 50.000 0.00 0.00 0.00 2.69
3803 5615 4.098654 CCAGACTAGGGATGTGACAGTTAG 59.901 50.000 0.00 0.00 0.00 2.34
3804 5616 4.023980 CCAGACTAGGGATGTGACAGTTA 58.976 47.826 0.00 0.00 0.00 2.24
3805 5617 2.834549 CCAGACTAGGGATGTGACAGTT 59.165 50.000 0.00 0.00 0.00 3.16
4232 6053 6.669631 AGTTTCTCTCCCCTTTTCTGTTTTA 58.330 36.000 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.