Multiple sequence alignment - TraesCS2B01G059800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G059800 chr2B 100.000 2255 0 0 1 2255 28997658 28999912 0.000000e+00 4165.0
1 TraesCS2B01G059800 chr2B 89.308 1777 165 13 500 2255 29056008 29057780 0.000000e+00 2206.0
2 TraesCS2B01G059800 chr2B 83.421 1140 132 24 500 1607 29979621 29978507 0.000000e+00 1005.0
3 TraesCS2B01G059800 chr2B 87.260 573 57 9 506 1064 29871078 29870508 6.790000e-180 640.0
4 TraesCS2B01G059800 chr2B 85.375 547 57 11 1068 1608 29869622 29869093 1.520000e-151 545.0
5 TraesCS2B01G059800 chr2B 82.792 616 72 14 1605 2189 773994849 773994237 9.230000e-144 520.0
6 TraesCS2B01G059800 chr2B 82.567 522 61 10 1763 2255 251377563 251377043 1.240000e-117 433.0
7 TraesCS2B01G059800 chr2B 78.981 157 22 9 170 321 671414979 671414829 1.840000e-16 97.1
8 TraesCS2B01G059800 chr2A 91.924 1263 87 11 495 1753 18647584 18648835 0.000000e+00 1753.0
9 TraesCS2B01G059800 chr2A 88.869 1123 98 15 500 1608 18614919 18616028 0.000000e+00 1356.0
10 TraesCS2B01G059800 chr2A 89.432 1022 85 12 500 1503 18676431 18677447 0.000000e+00 1267.0
11 TraesCS2B01G059800 chr2A 89.791 431 43 1 1822 2252 18648866 18649295 3.270000e-153 551.0
12 TraesCS2B01G059800 chr2D 88.261 1133 97 19 506 1608 17238545 17239671 0.000000e+00 1323.0
13 TraesCS2B01G059800 chr2D 90.333 931 70 16 689 1608 17184007 17184928 0.000000e+00 1203.0
14 TraesCS2B01G059800 chr2D 89.758 869 69 9 750 1607 17336729 17337588 0.000000e+00 1094.0
15 TraesCS2B01G059800 chr2D 88.649 555 51 3 1064 1607 17347191 17347744 0.000000e+00 665.0
16 TraesCS2B01G059800 chr2D 88.649 555 51 3 1064 1607 17356409 17356962 0.000000e+00 665.0
17 TraesCS2B01G059800 chr2D 81.832 677 81 18 1605 2255 89905867 89906527 4.260000e-147 531.0
18 TraesCS2B01G059800 chr2D 79.442 681 103 21 1604 2252 248382187 248382862 4.420000e-122 448.0
19 TraesCS2B01G059800 chr2D 86.973 261 27 6 495 752 17327805 17328061 1.020000e-73 287.0
20 TraesCS2B01G059800 chr2D 92.216 167 10 1 495 658 17183473 17183639 1.350000e-57 233.0
21 TraesCS2B01G059800 chr5D 81.194 670 103 11 1602 2255 233014462 233013800 3.320000e-143 518.0
22 TraesCS2B01G059800 chr5D 79.616 677 107 13 1607 2255 241829396 241830069 7.340000e-125 457.0
23 TraesCS2B01G059800 chr1D 81.315 669 83 21 1607 2255 462369741 462369095 2.580000e-139 505.0
24 TraesCS2B01G059800 chr1D 80.354 621 93 13 1603 2216 479390074 479389476 5.720000e-121 444.0
25 TraesCS2B01G059800 chr3B 81.175 664 86 15 1608 2255 595686904 595686264 4.330000e-137 497.0
26 TraesCS2B01G059800 chr3B 86.341 410 50 4 1604 2008 151229144 151228736 2.060000e-120 442.0
27 TraesCS2B01G059800 chr3D 80.425 659 86 21 1604 2254 100560890 100560267 1.580000e-126 462.0
28 TraesCS2B01G059800 chr3D 87.179 78 8 2 170 245 549369899 549369822 1.110000e-13 87.9
29 TraesCS2B01G059800 chr1B 79.444 647 81 18 1643 2255 666831408 666830780 5.800000e-111 411.0
30 TraesCS2B01G059800 chr6B 81.633 392 48 11 1600 1969 94305365 94304976 1.010000e-78 303.0
31 TraesCS2B01G059800 chr6B 74.852 676 134 22 1607 2255 657617101 657616435 7.930000e-70 274.0
32 TraesCS2B01G059800 chr3A 80.729 384 64 6 1882 2255 667107465 667107848 7.880000e-75 291.0
33 TraesCS2B01G059800 chr4A 80.170 353 62 7 1 348 39898794 39899143 7.990000e-65 257.0
34 TraesCS2B01G059800 chr4A 81.061 264 40 5 2002 2255 551331864 551332127 3.800000e-48 202.0
35 TraesCS2B01G059800 chr4A 78.455 246 42 7 1 245 663455153 663455388 1.400000e-32 150.0
36 TraesCS2B01G059800 chr4A 75.964 337 53 18 1 321 443848563 443848887 5.020000e-32 148.0
37 TraesCS2B01G059800 chr4A 73.304 457 92 24 43 493 614879827 614879395 8.400000e-30 141.0
38 TraesCS2B01G059800 chr6D 76.596 329 54 18 1 321 285502699 285503012 2.320000e-35 159.0
39 TraesCS2B01G059800 chr5B 75.077 325 62 12 1 321 174611589 174611898 1.410000e-27 134.0
40 TraesCS2B01G059800 chr5B 73.874 333 57 16 1 316 74176802 74177121 3.060000e-19 106.0
41 TraesCS2B01G059800 chr5B 88.608 79 9 0 164 242 15680343 15680421 1.840000e-16 97.1
42 TraesCS2B01G059800 chr5B 89.610 77 7 1 170 245 493161359 493161283 1.840000e-16 97.1
43 TraesCS2B01G059800 chr7B 83.051 118 16 4 379 493 10926339 10926455 1.100000e-18 104.0
44 TraesCS2B01G059800 chr7D 77.632 152 25 5 96 246 348119056 348119199 1.440000e-12 84.2
45 TraesCS2B01G059800 chr7A 76.331 169 27 9 102 267 340979995 340979837 6.680000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G059800 chr2B 28997658 28999912 2254 False 4165.0 4165 100.0000 1 2255 1 chr2B.!!$F1 2254
1 TraesCS2B01G059800 chr2B 29056008 29057780 1772 False 2206.0 2206 89.3080 500 2255 1 chr2B.!!$F2 1755
2 TraesCS2B01G059800 chr2B 29978507 29979621 1114 True 1005.0 1005 83.4210 500 1607 1 chr2B.!!$R1 1107
3 TraesCS2B01G059800 chr2B 29869093 29871078 1985 True 592.5 640 86.3175 506 1608 2 chr2B.!!$R5 1102
4 TraesCS2B01G059800 chr2B 773994237 773994849 612 True 520.0 520 82.7920 1605 2189 1 chr2B.!!$R4 584
5 TraesCS2B01G059800 chr2B 251377043 251377563 520 True 433.0 433 82.5670 1763 2255 1 chr2B.!!$R2 492
6 TraesCS2B01G059800 chr2A 18614919 18616028 1109 False 1356.0 1356 88.8690 500 1608 1 chr2A.!!$F1 1108
7 TraesCS2B01G059800 chr2A 18676431 18677447 1016 False 1267.0 1267 89.4320 500 1503 1 chr2A.!!$F2 1003
8 TraesCS2B01G059800 chr2A 18647584 18649295 1711 False 1152.0 1753 90.8575 495 2252 2 chr2A.!!$F3 1757
9 TraesCS2B01G059800 chr2D 17238545 17239671 1126 False 1323.0 1323 88.2610 506 1608 1 chr2D.!!$F1 1102
10 TraesCS2B01G059800 chr2D 17336729 17337588 859 False 1094.0 1094 89.7580 750 1607 1 chr2D.!!$F3 857
11 TraesCS2B01G059800 chr2D 17183473 17184928 1455 False 718.0 1203 91.2745 495 1608 2 chr2D.!!$F8 1113
12 TraesCS2B01G059800 chr2D 17347191 17347744 553 False 665.0 665 88.6490 1064 1607 1 chr2D.!!$F4 543
13 TraesCS2B01G059800 chr2D 17356409 17356962 553 False 665.0 665 88.6490 1064 1607 1 chr2D.!!$F5 543
14 TraesCS2B01G059800 chr2D 89905867 89906527 660 False 531.0 531 81.8320 1605 2255 1 chr2D.!!$F6 650
15 TraesCS2B01G059800 chr2D 248382187 248382862 675 False 448.0 448 79.4420 1604 2252 1 chr2D.!!$F7 648
16 TraesCS2B01G059800 chr5D 233013800 233014462 662 True 518.0 518 81.1940 1602 2255 1 chr5D.!!$R1 653
17 TraesCS2B01G059800 chr5D 241829396 241830069 673 False 457.0 457 79.6160 1607 2255 1 chr5D.!!$F1 648
18 TraesCS2B01G059800 chr1D 462369095 462369741 646 True 505.0 505 81.3150 1607 2255 1 chr1D.!!$R1 648
19 TraesCS2B01G059800 chr1D 479389476 479390074 598 True 444.0 444 80.3540 1603 2216 1 chr1D.!!$R2 613
20 TraesCS2B01G059800 chr3B 595686264 595686904 640 True 497.0 497 81.1750 1608 2255 1 chr3B.!!$R2 647
21 TraesCS2B01G059800 chr3D 100560267 100560890 623 True 462.0 462 80.4250 1604 2254 1 chr3D.!!$R1 650
22 TraesCS2B01G059800 chr1B 666830780 666831408 628 True 411.0 411 79.4440 1643 2255 1 chr1B.!!$R1 612
23 TraesCS2B01G059800 chr6B 657616435 657617101 666 True 274.0 274 74.8520 1607 2255 1 chr6B.!!$R2 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 494 0.101579 GACCGGCTAGAGTTGCTCTC 59.898 60.0 0.0 2.14 40.34 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 3527 0.433492 CGACGGCTACAAGACAAACG 59.567 55.0 0.0 0.0 0.0 3.6 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.798596 ATTGATAGCGAGAAATTTGACAGAT 57.201 32.000 0.00 0.00 0.00 2.90
26 27 6.594284 TGATAGCGAGAAATTTGACAGATG 57.406 37.500 0.00 0.00 0.00 2.90
27 28 6.108687 TGATAGCGAGAAATTTGACAGATGT 58.891 36.000 0.00 0.00 0.00 3.06
28 29 6.595326 TGATAGCGAGAAATTTGACAGATGTT 59.405 34.615 0.00 0.00 0.00 2.71
29 30 5.695851 AGCGAGAAATTTGACAGATGTTT 57.304 34.783 0.00 0.00 0.00 2.83
30 31 6.801539 AGCGAGAAATTTGACAGATGTTTA 57.198 33.333 0.00 0.00 0.00 2.01
31 32 7.383102 AGCGAGAAATTTGACAGATGTTTAT 57.617 32.000 0.00 0.00 0.00 1.40
32 33 7.246311 AGCGAGAAATTTGACAGATGTTTATG 58.754 34.615 0.00 0.00 0.00 1.90
33 34 6.021153 GCGAGAAATTTGACAGATGTTTATGC 60.021 38.462 0.00 0.00 0.00 3.14
34 35 7.022979 CGAGAAATTTGACAGATGTTTATGCA 58.977 34.615 0.00 0.00 0.00 3.96
35 36 7.007725 CGAGAAATTTGACAGATGTTTATGCAC 59.992 37.037 0.00 0.00 0.00 4.57
36 37 7.889469 AGAAATTTGACAGATGTTTATGCACT 58.111 30.769 0.00 0.00 0.00 4.40
37 38 8.025445 AGAAATTTGACAGATGTTTATGCACTC 58.975 33.333 0.00 0.00 0.00 3.51
38 39 5.627499 TTTGACAGATGTTTATGCACTCC 57.373 39.130 0.00 0.00 0.00 3.85
39 40 4.558226 TGACAGATGTTTATGCACTCCT 57.442 40.909 0.00 0.00 0.00 3.69
40 41 4.910195 TGACAGATGTTTATGCACTCCTT 58.090 39.130 0.00 0.00 0.00 3.36
41 42 4.937620 TGACAGATGTTTATGCACTCCTTC 59.062 41.667 0.00 0.00 0.00 3.46
42 43 4.265073 ACAGATGTTTATGCACTCCTTCC 58.735 43.478 0.00 0.00 0.00 3.46
43 44 4.018960 ACAGATGTTTATGCACTCCTTCCT 60.019 41.667 0.00 0.00 0.00 3.36
44 45 5.189736 ACAGATGTTTATGCACTCCTTCCTA 59.810 40.000 0.00 0.00 0.00 2.94
45 46 5.757320 CAGATGTTTATGCACTCCTTCCTAG 59.243 44.000 0.00 0.00 0.00 3.02
46 47 5.663106 AGATGTTTATGCACTCCTTCCTAGA 59.337 40.000 0.00 0.00 0.00 2.43
47 48 5.086104 TGTTTATGCACTCCTTCCTAGAC 57.914 43.478 0.00 0.00 0.00 2.59
48 49 4.777896 TGTTTATGCACTCCTTCCTAGACT 59.222 41.667 0.00 0.00 0.00 3.24
49 50 5.955959 TGTTTATGCACTCCTTCCTAGACTA 59.044 40.000 0.00 0.00 0.00 2.59
50 51 6.096987 TGTTTATGCACTCCTTCCTAGACTAG 59.903 42.308 2.18 2.18 0.00 2.57
51 52 4.528076 ATGCACTCCTTCCTAGACTAGA 57.472 45.455 11.27 0.00 0.00 2.43
52 53 3.892284 TGCACTCCTTCCTAGACTAGAG 58.108 50.000 11.27 2.88 0.00 2.43
53 54 3.523972 TGCACTCCTTCCTAGACTAGAGA 59.476 47.826 11.27 4.07 0.00 3.10
54 55 3.881089 GCACTCCTTCCTAGACTAGAGAC 59.119 52.174 11.27 0.00 0.00 3.36
55 56 4.384868 GCACTCCTTCCTAGACTAGAGACT 60.385 50.000 11.27 0.00 0.00 3.24
56 57 5.163280 GCACTCCTTCCTAGACTAGAGACTA 60.163 48.000 11.27 0.00 0.00 2.59
57 58 6.522054 CACTCCTTCCTAGACTAGAGACTAG 58.478 48.000 11.27 8.53 39.16 2.57
58 59 6.325545 CACTCCTTCCTAGACTAGAGACTAGA 59.674 46.154 11.27 0.00 40.95 2.43
59 60 6.325804 ACTCCTTCCTAGACTAGAGACTAGAC 59.674 46.154 11.27 6.50 40.95 2.59
60 61 6.203813 TCCTTCCTAGACTAGAGACTAGACA 58.796 44.000 11.27 2.10 40.95 3.41
61 62 6.847567 TCCTTCCTAGACTAGAGACTAGACAT 59.152 42.308 11.27 1.64 40.95 3.06
62 63 6.934645 CCTTCCTAGACTAGAGACTAGACATG 59.065 46.154 11.27 0.00 40.95 3.21
63 64 7.202056 CCTTCCTAGACTAGAGACTAGACATGA 60.202 44.444 11.27 4.05 40.95 3.07
64 65 7.297936 TCCTAGACTAGAGACTAGACATGAG 57.702 44.000 11.27 0.00 40.95 2.90
65 66 7.070629 TCCTAGACTAGAGACTAGACATGAGA 58.929 42.308 11.27 3.22 40.95 3.27
66 67 7.014905 TCCTAGACTAGAGACTAGACATGAGAC 59.985 44.444 11.27 0.00 40.95 3.36
67 68 6.808321 AGACTAGAGACTAGACATGAGACT 57.192 41.667 11.94 0.00 0.00 3.24
68 69 7.907841 AGACTAGAGACTAGACATGAGACTA 57.092 40.000 11.94 0.00 0.00 2.59
69 70 7.952671 AGACTAGAGACTAGACATGAGACTAG 58.047 42.308 17.54 17.54 43.04 2.57
70 71 7.783119 AGACTAGAGACTAGACATGAGACTAGA 59.217 40.741 22.37 8.02 40.91 2.43
71 72 7.952671 ACTAGAGACTAGACATGAGACTAGAG 58.047 42.308 22.37 15.15 40.91 2.43
72 73 6.174720 AGAGACTAGACATGAGACTAGAGG 57.825 45.833 22.37 7.44 40.91 3.69
73 74 4.714632 AGACTAGACATGAGACTAGAGGC 58.285 47.826 22.37 14.88 40.91 4.70
74 75 3.472652 ACTAGACATGAGACTAGAGGCG 58.527 50.000 22.37 6.96 40.91 5.52
75 76 2.719531 AGACATGAGACTAGAGGCGA 57.280 50.000 0.00 0.00 0.00 5.54
76 77 2.294074 AGACATGAGACTAGAGGCGAC 58.706 52.381 0.00 0.00 0.00 5.19
77 78 2.017782 GACATGAGACTAGAGGCGACA 58.982 52.381 0.00 0.00 0.00 4.35
78 79 1.746220 ACATGAGACTAGAGGCGACAC 59.254 52.381 0.00 0.00 0.00 3.67
79 80 1.745653 CATGAGACTAGAGGCGACACA 59.254 52.381 0.00 0.00 0.00 3.72
80 81 1.905637 TGAGACTAGAGGCGACACAA 58.094 50.000 0.00 0.00 0.00 3.33
81 82 2.447443 TGAGACTAGAGGCGACACAAT 58.553 47.619 0.00 0.00 0.00 2.71
82 83 2.164422 TGAGACTAGAGGCGACACAATG 59.836 50.000 0.00 0.00 0.00 2.82
83 84 2.164624 GAGACTAGAGGCGACACAATGT 59.835 50.000 0.00 0.00 0.00 2.71
84 85 2.563179 AGACTAGAGGCGACACAATGTT 59.437 45.455 0.00 0.00 0.00 2.71
85 86 2.668457 GACTAGAGGCGACACAATGTTG 59.332 50.000 0.00 0.00 34.88 3.33
86 87 2.299013 ACTAGAGGCGACACAATGTTGA 59.701 45.455 0.00 0.00 33.58 3.18
87 88 2.254546 AGAGGCGACACAATGTTGAA 57.745 45.000 0.00 0.00 33.58 2.69
88 89 2.783135 AGAGGCGACACAATGTTGAAT 58.217 42.857 0.00 0.00 33.58 2.57
89 90 3.149196 AGAGGCGACACAATGTTGAATT 58.851 40.909 0.00 0.00 33.58 2.17
90 91 3.058016 AGAGGCGACACAATGTTGAATTG 60.058 43.478 0.00 0.00 33.58 2.32
91 92 2.622942 AGGCGACACAATGTTGAATTGT 59.377 40.909 0.00 0.00 42.38 2.71
99 100 4.692228 ACAATGTTGAATTGTGTGGAACC 58.308 39.130 3.03 0.00 40.37 3.62
100 101 4.405358 ACAATGTTGAATTGTGTGGAACCT 59.595 37.500 3.03 0.00 40.37 3.50
101 102 5.596361 ACAATGTTGAATTGTGTGGAACCTA 59.404 36.000 3.03 0.00 40.37 3.08
102 103 6.097554 ACAATGTTGAATTGTGTGGAACCTAA 59.902 34.615 3.03 0.00 40.37 2.69
103 104 5.766150 TGTTGAATTGTGTGGAACCTAAG 57.234 39.130 0.00 0.00 34.36 2.18
104 105 5.441500 TGTTGAATTGTGTGGAACCTAAGA 58.558 37.500 0.00 0.00 34.36 2.10
105 106 5.888724 TGTTGAATTGTGTGGAACCTAAGAA 59.111 36.000 0.00 0.00 34.36 2.52
106 107 6.039270 TGTTGAATTGTGTGGAACCTAAGAAG 59.961 38.462 0.00 0.00 34.36 2.85
107 108 5.935945 TGAATTGTGTGGAACCTAAGAAGA 58.064 37.500 0.00 0.00 34.36 2.87
108 109 6.361433 TGAATTGTGTGGAACCTAAGAAGAA 58.639 36.000 0.00 0.00 34.36 2.52
109 110 6.831353 TGAATTGTGTGGAACCTAAGAAGAAA 59.169 34.615 0.00 0.00 34.36 2.52
110 111 6.884280 ATTGTGTGGAACCTAAGAAGAAAG 57.116 37.500 0.00 0.00 34.36 2.62
111 112 5.623956 TGTGTGGAACCTAAGAAGAAAGA 57.376 39.130 0.00 0.00 34.36 2.52
112 113 5.996644 TGTGTGGAACCTAAGAAGAAAGAA 58.003 37.500 0.00 0.00 34.36 2.52
113 114 6.055588 TGTGTGGAACCTAAGAAGAAAGAAG 58.944 40.000 0.00 0.00 34.36 2.85
114 115 6.056236 GTGTGGAACCTAAGAAGAAAGAAGT 58.944 40.000 0.00 0.00 34.36 3.01
115 116 6.017852 GTGTGGAACCTAAGAAGAAAGAAGTG 60.018 42.308 0.00 0.00 34.36 3.16
116 117 6.056236 GTGGAACCTAAGAAGAAAGAAGTGT 58.944 40.000 0.00 0.00 0.00 3.55
117 118 6.017852 GTGGAACCTAAGAAGAAAGAAGTGTG 60.018 42.308 0.00 0.00 0.00 3.82
118 119 5.049336 GGAACCTAAGAAGAAAGAAGTGTGC 60.049 44.000 0.00 0.00 0.00 4.57
119 120 5.036117 ACCTAAGAAGAAAGAAGTGTGCA 57.964 39.130 0.00 0.00 0.00 4.57
120 121 5.437060 ACCTAAGAAGAAAGAAGTGTGCAA 58.563 37.500 0.00 0.00 0.00 4.08
121 122 5.529060 ACCTAAGAAGAAAGAAGTGTGCAAG 59.471 40.000 0.00 0.00 0.00 4.01
122 123 3.978718 AGAAGAAAGAAGTGTGCAAGC 57.021 42.857 0.00 0.00 0.00 4.01
123 124 3.549794 AGAAGAAAGAAGTGTGCAAGCT 58.450 40.909 0.00 0.00 0.00 3.74
124 125 3.950395 AGAAGAAAGAAGTGTGCAAGCTT 59.050 39.130 0.00 0.00 0.00 3.74
125 126 3.705043 AGAAAGAAGTGTGCAAGCTTG 57.295 42.857 22.44 22.44 0.00 4.01
126 127 3.282021 AGAAAGAAGTGTGCAAGCTTGA 58.718 40.909 30.39 12.25 0.00 3.02
127 128 3.314635 AGAAAGAAGTGTGCAAGCTTGAG 59.685 43.478 30.39 4.87 0.00 3.02
128 129 2.627515 AGAAGTGTGCAAGCTTGAGA 57.372 45.000 30.39 12.49 0.00 3.27
129 130 2.923121 AGAAGTGTGCAAGCTTGAGAA 58.077 42.857 30.39 11.55 0.00 2.87
130 131 2.877168 AGAAGTGTGCAAGCTTGAGAAG 59.123 45.455 30.39 3.21 0.00 2.85
131 132 2.338577 AGTGTGCAAGCTTGAGAAGT 57.661 45.000 30.39 13.12 0.00 3.01
132 133 2.216898 AGTGTGCAAGCTTGAGAAGTC 58.783 47.619 30.39 11.38 0.00 3.01
133 134 1.942657 GTGTGCAAGCTTGAGAAGTCA 59.057 47.619 30.39 13.96 0.00 3.41
134 135 2.355756 GTGTGCAAGCTTGAGAAGTCAA 59.644 45.455 30.39 5.65 40.55 3.18
135 136 3.004106 GTGTGCAAGCTTGAGAAGTCAAT 59.996 43.478 30.39 0.00 41.96 2.57
136 137 3.633525 TGTGCAAGCTTGAGAAGTCAATT 59.366 39.130 30.39 0.00 41.96 2.32
137 138 3.979495 GTGCAAGCTTGAGAAGTCAATTG 59.021 43.478 30.39 0.00 41.96 2.32
138 139 3.884693 TGCAAGCTTGAGAAGTCAATTGA 59.115 39.130 30.39 3.38 41.96 2.57
139 140 4.023450 TGCAAGCTTGAGAAGTCAATTGAG 60.023 41.667 30.39 0.00 41.96 3.02
140 141 4.214971 GCAAGCTTGAGAAGTCAATTGAGA 59.785 41.667 30.39 0.00 41.96 3.27
141 142 5.278169 GCAAGCTTGAGAAGTCAATTGAGAA 60.278 40.000 30.39 0.00 41.96 2.87
142 143 6.732154 CAAGCTTGAGAAGTCAATTGAGAAA 58.268 36.000 22.31 0.00 41.96 2.52
143 144 6.949352 AGCTTGAGAAGTCAATTGAGAAAA 57.051 33.333 8.80 0.00 41.96 2.29
144 145 7.521871 AGCTTGAGAAGTCAATTGAGAAAAT 57.478 32.000 8.80 0.00 41.96 1.82
145 146 8.627208 AGCTTGAGAAGTCAATTGAGAAAATA 57.373 30.769 8.80 0.00 41.96 1.40
146 147 9.071276 AGCTTGAGAAGTCAATTGAGAAAATAA 57.929 29.630 8.80 0.63 41.96 1.40
147 148 9.683069 GCTTGAGAAGTCAATTGAGAAAATAAA 57.317 29.630 8.80 0.00 41.96 1.40
194 195 4.907457 CCAACTTGTGGGAGCAGT 57.093 55.556 0.00 0.00 44.64 4.40
195 196 3.116091 CCAACTTGTGGGAGCAGTT 57.884 52.632 0.00 0.00 44.64 3.16
196 197 2.270352 CCAACTTGTGGGAGCAGTTA 57.730 50.000 0.00 0.00 44.64 2.24
197 198 2.795329 CCAACTTGTGGGAGCAGTTAT 58.205 47.619 0.00 0.00 44.64 1.89
198 199 2.489329 CCAACTTGTGGGAGCAGTTATG 59.511 50.000 0.00 0.00 44.64 1.90
199 200 2.489329 CAACTTGTGGGAGCAGTTATGG 59.511 50.000 0.00 0.00 0.00 2.74
200 201 1.985159 ACTTGTGGGAGCAGTTATGGA 59.015 47.619 0.00 0.00 0.00 3.41
201 202 2.375174 ACTTGTGGGAGCAGTTATGGAA 59.625 45.455 0.00 0.00 0.00 3.53
202 203 3.181434 ACTTGTGGGAGCAGTTATGGAAA 60.181 43.478 0.00 0.00 0.00 3.13
203 204 3.737559 TGTGGGAGCAGTTATGGAAAT 57.262 42.857 0.00 0.00 0.00 2.17
204 205 4.046286 TGTGGGAGCAGTTATGGAAATT 57.954 40.909 0.00 0.00 0.00 1.82
205 206 3.763360 TGTGGGAGCAGTTATGGAAATTG 59.237 43.478 0.00 0.00 0.00 2.32
206 207 3.131046 GTGGGAGCAGTTATGGAAATTGG 59.869 47.826 0.00 0.00 0.00 3.16
207 208 3.011144 TGGGAGCAGTTATGGAAATTGGA 59.989 43.478 0.00 0.00 0.00 3.53
208 209 4.218312 GGGAGCAGTTATGGAAATTGGAT 58.782 43.478 0.00 0.00 0.00 3.41
209 210 4.651045 GGGAGCAGTTATGGAAATTGGATT 59.349 41.667 0.00 0.00 0.00 3.01
210 211 5.129320 GGGAGCAGTTATGGAAATTGGATTT 59.871 40.000 0.00 0.00 34.64 2.17
211 212 6.276091 GGAGCAGTTATGGAAATTGGATTTC 58.724 40.000 5.12 5.12 46.05 2.17
212 213 6.097412 GGAGCAGTTATGGAAATTGGATTTCT 59.903 38.462 11.79 0.00 46.03 2.52
213 214 7.285401 GGAGCAGTTATGGAAATTGGATTTCTA 59.715 37.037 11.79 7.44 46.03 2.10
215 216 9.205513 AGCAGTTATGGAAATTGGATTTCTATT 57.794 29.630 14.60 4.15 44.70 1.73
216 217 9.252962 GCAGTTATGGAAATTGGATTTCTATTG 57.747 33.333 14.60 9.90 44.70 1.90
222 223 8.421249 TGGAAATTGGATTTCTATTGAAGTGT 57.579 30.769 11.79 0.00 46.03 3.55
223 224 8.522830 TGGAAATTGGATTTCTATTGAAGTGTC 58.477 33.333 11.79 0.00 46.03 3.67
224 225 8.743714 GGAAATTGGATTTCTATTGAAGTGTCT 58.256 33.333 11.79 0.00 46.03 3.41
230 231 9.739276 TGGATTTCTATTGAAGTGTCTAAATGT 57.261 29.630 0.00 0.00 33.28 2.71
231 232 9.994432 GGATTTCTATTGAAGTGTCTAAATGTG 57.006 33.333 0.00 0.00 33.28 3.21
232 233 9.994432 GATTTCTATTGAAGTGTCTAAATGTGG 57.006 33.333 0.00 0.00 33.28 4.17
233 234 8.918202 TTTCTATTGAAGTGTCTAAATGTGGT 57.082 30.769 0.00 0.00 33.28 4.16
234 235 8.918202 TTCTATTGAAGTGTCTAAATGTGGTT 57.082 30.769 0.00 0.00 0.00 3.67
235 236 8.547967 TCTATTGAAGTGTCTAAATGTGGTTC 57.452 34.615 0.00 0.00 0.00 3.62
236 237 8.375506 TCTATTGAAGTGTCTAAATGTGGTTCT 58.624 33.333 0.00 0.00 0.00 3.01
237 238 7.823745 ATTGAAGTGTCTAAATGTGGTTCTT 57.176 32.000 0.00 0.00 0.00 2.52
238 239 7.639113 TTGAAGTGTCTAAATGTGGTTCTTT 57.361 32.000 0.00 0.00 0.00 2.52
239 240 7.639113 TGAAGTGTCTAAATGTGGTTCTTTT 57.361 32.000 0.00 0.00 0.00 2.27
240 241 8.062065 TGAAGTGTCTAAATGTGGTTCTTTTT 57.938 30.769 0.00 0.00 0.00 1.94
262 263 5.821516 TTTTTGTTCGGTTCTCTTAGCAA 57.178 34.783 0.00 0.00 0.00 3.91
263 264 5.821516 TTTTGTTCGGTTCTCTTAGCAAA 57.178 34.783 0.00 0.00 0.00 3.68
264 265 5.418310 TTTGTTCGGTTCTCTTAGCAAAG 57.582 39.130 0.00 0.00 0.00 2.77
265 266 4.330944 TGTTCGGTTCTCTTAGCAAAGA 57.669 40.909 0.00 0.00 39.47 2.52
266 267 4.699637 TGTTCGGTTCTCTTAGCAAAGAA 58.300 39.130 0.00 0.00 41.19 2.52
267 268 4.510340 TGTTCGGTTCTCTTAGCAAAGAAC 59.490 41.667 6.69 6.69 46.86 3.01
273 274 6.467723 GTTCTCTTAGCAAAGAACGATGAA 57.532 37.500 0.00 0.00 41.19 2.57
274 275 7.066374 GTTCTCTTAGCAAAGAACGATGAAT 57.934 36.000 0.00 0.00 41.19 2.57
275 276 7.522374 GTTCTCTTAGCAAAGAACGATGAATT 58.478 34.615 0.00 0.00 41.19 2.17
276 277 8.656849 GTTCTCTTAGCAAAGAACGATGAATTA 58.343 33.333 0.00 0.00 41.19 1.40
277 278 8.948631 TCTCTTAGCAAAGAACGATGAATTAT 57.051 30.769 0.00 0.00 41.19 1.28
278 279 8.820933 TCTCTTAGCAAAGAACGATGAATTATG 58.179 33.333 0.00 0.00 41.19 1.90
279 280 8.492673 TCTTAGCAAAGAACGATGAATTATGT 57.507 30.769 0.00 0.00 38.81 2.29
280 281 9.594478 TCTTAGCAAAGAACGATGAATTATGTA 57.406 29.630 0.00 0.00 38.81 2.29
281 282 9.638300 CTTAGCAAAGAACGATGAATTATGTAC 57.362 33.333 0.00 0.00 34.37 2.90
282 283 7.849804 AGCAAAGAACGATGAATTATGTACT 57.150 32.000 0.00 0.00 0.00 2.73
283 284 8.942338 AGCAAAGAACGATGAATTATGTACTA 57.058 30.769 0.00 0.00 0.00 1.82
284 285 9.547753 AGCAAAGAACGATGAATTATGTACTAT 57.452 29.630 0.00 0.00 0.00 2.12
285 286 9.586150 GCAAAGAACGATGAATTATGTACTATG 57.414 33.333 0.00 0.00 0.00 2.23
306 307 9.685276 ACTATGATGTATTGAAATGTCCTTCAA 57.315 29.630 1.58 1.58 46.45 2.69
340 341 9.757227 AAGAAATAATGAAATTTGTTTCGGTGA 57.243 25.926 0.00 0.00 41.02 4.02
341 342 9.191995 AGAAATAATGAAATTTGTTTCGGTGAC 57.808 29.630 0.00 0.00 41.02 3.67
342 343 7.883229 AATAATGAAATTTGTTTCGGTGACC 57.117 32.000 0.00 0.00 37.87 4.02
343 344 4.295051 AATGAAATTTGTTTCGGTGACCG 58.705 39.130 19.67 19.67 40.76 4.79
344 345 4.036971 AATGAAATTTGTTTCGGTGACCGA 59.963 37.500 24.59 24.59 44.98 4.69
356 357 3.363341 GGTGACCGAAAAAGAAATGCA 57.637 42.857 0.00 0.00 0.00 3.96
357 358 3.913089 GGTGACCGAAAAAGAAATGCAT 58.087 40.909 0.00 0.00 0.00 3.96
358 359 4.306600 GGTGACCGAAAAAGAAATGCATT 58.693 39.130 5.99 5.99 0.00 3.56
359 360 4.749598 GGTGACCGAAAAAGAAATGCATTT 59.250 37.500 24.33 24.33 0.00 2.32
360 361 5.333263 GGTGACCGAAAAAGAAATGCATTTG 60.333 40.000 28.67 13.85 0.00 2.32
361 362 5.461737 GTGACCGAAAAAGAAATGCATTTGA 59.538 36.000 28.67 0.00 0.00 2.69
362 363 5.461737 TGACCGAAAAAGAAATGCATTTGAC 59.538 36.000 28.67 15.25 0.00 3.18
363 364 5.355596 ACCGAAAAAGAAATGCATTTGACA 58.644 33.333 28.67 0.00 0.00 3.58
364 365 5.814705 ACCGAAAAAGAAATGCATTTGACAA 59.185 32.000 28.67 0.00 0.00 3.18
365 366 6.482973 ACCGAAAAAGAAATGCATTTGACAAT 59.517 30.769 28.67 12.02 0.00 2.71
366 367 7.012232 ACCGAAAAAGAAATGCATTTGACAATT 59.988 29.630 28.67 15.81 0.00 2.32
367 368 7.856894 CCGAAAAAGAAATGCATTTGACAATTT 59.143 29.630 28.67 19.33 0.00 1.82
368 369 9.224058 CGAAAAAGAAATGCATTTGACAATTTT 57.776 25.926 28.67 22.63 0.00 1.82
373 374 9.934190 AAGAAATGCATTTGACAATTTTTGTAC 57.066 25.926 28.67 9.20 45.52 2.90
374 375 9.328845 AGAAATGCATTTGACAATTTTTGTACT 57.671 25.926 28.67 11.26 45.52 2.73
375 376 9.584839 GAAATGCATTTGACAATTTTTGTACTC 57.415 29.630 28.67 4.82 45.52 2.59
376 377 8.891671 AATGCATTTGACAATTTTTGTACTCT 57.108 26.923 5.99 0.00 45.52 3.24
377 378 9.979578 AATGCATTTGACAATTTTTGTACTCTA 57.020 25.926 5.99 0.00 45.52 2.43
378 379 8.795786 TGCATTTGACAATTTTTGTACTCTAC 57.204 30.769 0.00 0.00 45.52 2.59
379 380 8.629158 TGCATTTGACAATTTTTGTACTCTACT 58.371 29.630 0.00 0.00 45.52 2.57
395 396 9.842775 TGTACTCTACTAAATTTAGGAGATCGA 57.157 33.333 31.45 20.19 46.72 3.59
397 398 8.983702 ACTCTACTAAATTTAGGAGATCGACT 57.016 34.615 31.45 14.64 46.72 4.18
403 404 9.984190 ACTAAATTTAGGAGATCGACTAAATCC 57.016 33.333 25.25 10.97 44.67 3.01
404 405 7.948278 AAATTTAGGAGATCGACTAAATCCG 57.052 36.000 24.85 0.00 44.67 4.18
405 406 5.449107 TTTAGGAGATCGACTAAATCCGG 57.551 43.478 16.12 0.00 35.05 5.14
406 407 1.614413 AGGAGATCGACTAAATCCGGC 59.386 52.381 0.00 0.00 35.13 6.13
407 408 1.336980 GGAGATCGACTAAATCCGGCC 60.337 57.143 0.00 0.00 0.00 6.13
408 409 1.340248 GAGATCGACTAAATCCGGCCA 59.660 52.381 2.24 0.00 0.00 5.36
409 410 1.760613 AGATCGACTAAATCCGGCCAA 59.239 47.619 2.24 0.00 0.00 4.52
410 411 2.169769 AGATCGACTAAATCCGGCCAAA 59.830 45.455 2.24 0.00 0.00 3.28
411 412 2.476126 TCGACTAAATCCGGCCAAAA 57.524 45.000 2.24 0.00 0.00 2.44
412 413 2.780714 TCGACTAAATCCGGCCAAAAA 58.219 42.857 2.24 0.00 0.00 1.94
449 450 8.623030 AGAAATACTCTACTAAGCTTTACTCGG 58.377 37.037 3.20 0.00 30.22 4.63
450 451 4.635833 ACTCTACTAAGCTTTACTCGGC 57.364 45.455 3.20 0.00 0.00 5.54
451 452 4.271661 ACTCTACTAAGCTTTACTCGGCT 58.728 43.478 3.20 0.00 40.85 5.52
452 453 4.096682 ACTCTACTAAGCTTTACTCGGCTG 59.903 45.833 3.20 0.00 38.91 4.85
453 454 2.674796 ACTAAGCTTTACTCGGCTGG 57.325 50.000 3.20 0.00 38.91 4.85
454 455 2.176889 ACTAAGCTTTACTCGGCTGGA 58.823 47.619 3.20 0.00 38.91 3.86
455 456 2.766828 ACTAAGCTTTACTCGGCTGGAT 59.233 45.455 3.20 0.00 38.91 3.41
456 457 3.958798 ACTAAGCTTTACTCGGCTGGATA 59.041 43.478 3.20 0.00 38.91 2.59
457 458 2.892784 AGCTTTACTCGGCTGGATAC 57.107 50.000 0.00 0.00 37.41 2.24
458 459 2.389715 AGCTTTACTCGGCTGGATACT 58.610 47.619 0.00 0.00 37.41 2.12
459 460 2.362717 AGCTTTACTCGGCTGGATACTC 59.637 50.000 0.00 0.00 37.41 2.59
460 461 2.546162 GCTTTACTCGGCTGGATACTCC 60.546 54.545 0.00 0.00 36.96 3.85
461 462 2.750141 TTACTCGGCTGGATACTCCT 57.250 50.000 0.00 0.00 37.46 3.69
462 463 2.273538 TACTCGGCTGGATACTCCTC 57.726 55.000 0.00 0.00 37.46 3.71
463 464 0.553819 ACTCGGCTGGATACTCCTCT 59.446 55.000 0.00 0.00 37.46 3.69
464 465 1.775459 ACTCGGCTGGATACTCCTCTA 59.225 52.381 0.00 0.00 37.46 2.43
465 466 2.377193 ACTCGGCTGGATACTCCTCTAT 59.623 50.000 0.00 0.00 37.46 1.98
466 467 3.181427 ACTCGGCTGGATACTCCTCTATT 60.181 47.826 0.00 0.00 37.46 1.73
467 468 3.829601 CTCGGCTGGATACTCCTCTATTT 59.170 47.826 0.00 0.00 37.46 1.40
468 469 4.223953 TCGGCTGGATACTCCTCTATTTT 58.776 43.478 0.00 0.00 37.46 1.82
469 470 4.654262 TCGGCTGGATACTCCTCTATTTTT 59.346 41.667 0.00 0.00 37.46 1.94
470 471 5.836898 TCGGCTGGATACTCCTCTATTTTTA 59.163 40.000 0.00 0.00 37.46 1.52
471 472 6.015350 TCGGCTGGATACTCCTCTATTTTTAG 60.015 42.308 0.00 0.00 37.46 1.85
472 473 5.935206 GGCTGGATACTCCTCTATTTTTAGC 59.065 44.000 0.00 0.00 37.46 3.09
473 474 6.464465 GGCTGGATACTCCTCTATTTTTAGCA 60.464 42.308 0.00 0.00 37.46 3.49
474 475 6.648725 GCTGGATACTCCTCTATTTTTAGCAG 59.351 42.308 0.00 0.00 37.46 4.24
475 476 7.472100 GCTGGATACTCCTCTATTTTTAGCAGA 60.472 40.741 0.00 0.00 37.46 4.26
476 477 7.727181 TGGATACTCCTCTATTTTTAGCAGAC 58.273 38.462 0.00 0.00 37.46 3.51
477 478 7.156000 GGATACTCCTCTATTTTTAGCAGACC 58.844 42.308 0.00 0.00 32.53 3.85
478 479 5.012328 ACTCCTCTATTTTTAGCAGACCG 57.988 43.478 0.00 0.00 0.00 4.79
479 480 4.141914 ACTCCTCTATTTTTAGCAGACCGG 60.142 45.833 0.00 0.00 0.00 5.28
480 481 2.872858 CCTCTATTTTTAGCAGACCGGC 59.127 50.000 0.00 0.00 0.00 6.13
482 483 4.202223 CCTCTATTTTTAGCAGACCGGCTA 60.202 45.833 0.00 0.00 43.70 3.93
483 484 4.945246 TCTATTTTTAGCAGACCGGCTAG 58.055 43.478 0.00 0.00 46.25 3.42
484 485 3.906720 ATTTTTAGCAGACCGGCTAGA 57.093 42.857 0.00 0.00 46.25 2.43
485 486 2.961526 TTTTAGCAGACCGGCTAGAG 57.038 50.000 0.00 0.00 46.25 2.43
486 487 1.848652 TTTAGCAGACCGGCTAGAGT 58.151 50.000 0.00 0.00 46.25 3.24
487 488 1.848652 TTAGCAGACCGGCTAGAGTT 58.151 50.000 0.00 0.00 46.25 3.01
488 489 1.103803 TAGCAGACCGGCTAGAGTTG 58.896 55.000 0.00 0.00 43.70 3.16
489 490 1.811679 GCAGACCGGCTAGAGTTGC 60.812 63.158 0.00 0.00 0.00 4.17
490 491 1.893786 CAGACCGGCTAGAGTTGCT 59.106 57.895 0.00 0.00 0.00 3.91
491 492 0.179124 CAGACCGGCTAGAGTTGCTC 60.179 60.000 0.00 0.00 0.00 4.26
492 493 0.323908 AGACCGGCTAGAGTTGCTCT 60.324 55.000 0.00 4.02 43.83 4.09
493 494 0.101579 GACCGGCTAGAGTTGCTCTC 59.898 60.000 0.00 2.14 40.34 3.20
565 567 5.481473 AGCTGAAAATTACATCCATGGTGTT 59.519 36.000 20.34 6.75 0.00 3.32
605 610 6.560003 TGTGTTTACCACTGGAGATGATAT 57.440 37.500 0.71 0.00 44.81 1.63
623 628 7.559533 AGATGATATCTCAAGACGCTATATGGT 59.440 37.037 3.98 0.00 33.42 3.55
629 634 4.607955 TCAAGACGCTATATGGTTCTTCG 58.392 43.478 3.18 0.00 0.00 3.79
630 635 3.644884 AGACGCTATATGGTTCTTCGG 57.355 47.619 0.00 0.00 0.00 4.30
651 656 7.737972 TCGGAAGTAAATTTCTTGATTGTGA 57.262 32.000 0.00 0.00 0.00 3.58
719 1064 2.171659 GTTTTCACCCCACCACCATTTT 59.828 45.455 0.00 0.00 0.00 1.82
768 1125 6.070656 GGATCCATTTTCCATGGTAGATTGA 58.929 40.000 12.58 4.91 40.06 2.57
809 1166 2.747396 GCAAACATCCATTCTTGCCA 57.253 45.000 0.00 0.00 38.56 4.92
817 1174 8.415553 CAAACATCCATTCTTGCCATCTATAAA 58.584 33.333 0.00 0.00 0.00 1.40
823 1180 7.609146 TCCATTCTTGCCATCTATAAATAGCTG 59.391 37.037 0.00 0.00 0.00 4.24
1066 2305 2.570181 GCACCTGCATGCCAAGAC 59.430 61.111 16.68 0.00 39.86 3.01
1271 2510 6.348868 GGAAACTAAGGCAAACTGAGAGATTG 60.349 42.308 0.00 0.00 31.44 2.67
1292 2532 4.956085 TGTGAGTATGGAATGAATACCCG 58.044 43.478 0.00 0.00 31.98 5.28
1397 2648 2.729194 CCGTAGCTCCCTAGATGCTAT 58.271 52.381 12.15 0.00 40.70 2.97
1599 2878 2.932130 GAAGCATCCCTCGGGCAGAC 62.932 65.000 0.00 0.00 34.68 3.51
1634 2914 6.931281 GCATCTCTAGCAGACCATGTATAAAA 59.069 38.462 0.00 0.00 32.26 1.52
1804 3105 0.249398 GTGGGCGCCCTGTATATAGG 59.751 60.000 43.34 8.54 37.59 2.57
1938 3316 2.441532 GGGATCACGTCGGAGGGA 60.442 66.667 2.48 0.00 0.00 4.20
2022 3413 2.659244 GGTGGTTGTTCGTCGCGA 60.659 61.111 3.71 3.71 0.00 5.87
2034 3426 2.508439 TCGCGACGGCTGGATTTC 60.508 61.111 3.71 0.00 36.88 2.17
2037 3433 2.813474 CGACGGCTGGATTTCGCA 60.813 61.111 0.00 0.00 0.00 5.10
2097 3503 3.435186 GGAGCACCTCGGCAAAGC 61.435 66.667 0.00 0.00 35.83 3.51
2120 3527 1.949631 GCGCCGCATACAGGTACTC 60.950 63.158 3.15 0.00 34.60 2.59
2128 3535 3.672511 CGCATACAGGTACTCGTTTGTCT 60.673 47.826 0.00 0.00 34.60 3.41
2144 3554 0.386478 GTCTTGTAGCCGTCGTCGTT 60.386 55.000 0.71 0.00 35.01 3.85
2153 3563 2.241880 CGTCGTCGTTGGTTTGCCT 61.242 57.895 0.00 0.00 35.27 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.768019 CATCTGTCAAATTTCTCGCTATCAATA 58.232 33.333 0.00 0.00 0.00 1.90
2 3 6.595326 ACATCTGTCAAATTTCTCGCTATCAA 59.405 34.615 0.00 0.00 0.00 2.57
3 4 6.108687 ACATCTGTCAAATTTCTCGCTATCA 58.891 36.000 0.00 0.00 0.00 2.15
5 6 6.992063 AACATCTGTCAAATTTCTCGCTAT 57.008 33.333 0.00 0.00 0.00 2.97
6 7 6.801539 AAACATCTGTCAAATTTCTCGCTA 57.198 33.333 0.00 0.00 0.00 4.26
8 9 6.021153 GCATAAACATCTGTCAAATTTCTCGC 60.021 38.462 0.00 0.00 0.00 5.03
9 10 7.007725 GTGCATAAACATCTGTCAAATTTCTCG 59.992 37.037 0.00 0.00 0.00 4.04
10 11 8.025445 AGTGCATAAACATCTGTCAAATTTCTC 58.975 33.333 0.00 0.00 0.00 2.87
11 12 7.889469 AGTGCATAAACATCTGTCAAATTTCT 58.111 30.769 0.00 0.00 0.00 2.52
12 13 7.274250 GGAGTGCATAAACATCTGTCAAATTTC 59.726 37.037 0.00 0.00 0.00 2.17
13 14 7.039504 AGGAGTGCATAAACATCTGTCAAATTT 60.040 33.333 0.00 0.00 0.00 1.82
14 15 6.435277 AGGAGTGCATAAACATCTGTCAAATT 59.565 34.615 0.00 0.00 0.00 1.82
15 16 5.948162 AGGAGTGCATAAACATCTGTCAAAT 59.052 36.000 0.00 0.00 0.00 2.32
16 17 5.316167 AGGAGTGCATAAACATCTGTCAAA 58.684 37.500 0.00 0.00 0.00 2.69
17 18 4.910195 AGGAGTGCATAAACATCTGTCAA 58.090 39.130 0.00 0.00 0.00 3.18
18 19 4.558226 AGGAGTGCATAAACATCTGTCA 57.442 40.909 0.00 0.00 0.00 3.58
19 20 4.333926 GGAAGGAGTGCATAAACATCTGTC 59.666 45.833 0.00 0.00 0.00 3.51
20 21 4.018960 AGGAAGGAGTGCATAAACATCTGT 60.019 41.667 0.00 0.00 0.00 3.41
21 22 4.521146 AGGAAGGAGTGCATAAACATCTG 58.479 43.478 0.00 0.00 0.00 2.90
22 23 4.851639 AGGAAGGAGTGCATAAACATCT 57.148 40.909 0.00 0.00 0.00 2.90
23 24 5.755861 GTCTAGGAAGGAGTGCATAAACATC 59.244 44.000 0.00 0.00 0.00 3.06
24 25 5.426833 AGTCTAGGAAGGAGTGCATAAACAT 59.573 40.000 0.00 0.00 0.00 2.71
25 26 4.777896 AGTCTAGGAAGGAGTGCATAAACA 59.222 41.667 0.00 0.00 0.00 2.83
26 27 5.346181 AGTCTAGGAAGGAGTGCATAAAC 57.654 43.478 0.00 0.00 0.00 2.01
27 28 6.432581 TCTAGTCTAGGAAGGAGTGCATAAA 58.567 40.000 7.05 0.00 0.00 1.40
28 29 6.014771 TCTAGTCTAGGAAGGAGTGCATAA 57.985 41.667 7.05 0.00 0.00 1.90
29 30 5.369993 TCTCTAGTCTAGGAAGGAGTGCATA 59.630 44.000 7.05 0.00 0.00 3.14
30 31 4.167113 TCTCTAGTCTAGGAAGGAGTGCAT 59.833 45.833 7.05 0.00 0.00 3.96
31 32 3.523972 TCTCTAGTCTAGGAAGGAGTGCA 59.476 47.826 7.05 0.00 0.00 4.57
32 33 3.881089 GTCTCTAGTCTAGGAAGGAGTGC 59.119 52.174 7.05 0.00 0.00 4.40
33 34 5.367945 AGTCTCTAGTCTAGGAAGGAGTG 57.632 47.826 7.05 0.00 0.00 3.51
34 35 6.325804 GTCTAGTCTCTAGTCTAGGAAGGAGT 59.674 46.154 7.05 6.41 35.48 3.85
35 36 6.325545 TGTCTAGTCTCTAGTCTAGGAAGGAG 59.674 46.154 7.05 0.00 35.48 3.69
36 37 6.203813 TGTCTAGTCTCTAGTCTAGGAAGGA 58.796 44.000 7.05 0.00 35.48 3.36
37 38 6.488769 TGTCTAGTCTCTAGTCTAGGAAGG 57.511 45.833 7.05 0.00 35.48 3.46
38 39 7.732025 TCATGTCTAGTCTCTAGTCTAGGAAG 58.268 42.308 7.05 0.00 35.48 3.46
39 40 7.565768 TCTCATGTCTAGTCTCTAGTCTAGGAA 59.434 40.741 7.05 0.00 35.48 3.36
40 41 7.014905 GTCTCATGTCTAGTCTCTAGTCTAGGA 59.985 44.444 7.05 1.10 35.48 2.94
41 42 7.015292 AGTCTCATGTCTAGTCTCTAGTCTAGG 59.985 44.444 7.05 0.00 35.48 3.02
42 43 7.952671 AGTCTCATGTCTAGTCTCTAGTCTAG 58.047 42.308 0.00 0.00 35.88 2.43
43 44 7.907841 AGTCTCATGTCTAGTCTCTAGTCTA 57.092 40.000 0.00 0.00 0.00 2.59
44 45 6.808321 AGTCTCATGTCTAGTCTCTAGTCT 57.192 41.667 0.00 0.00 0.00 3.24
45 46 7.948357 TCTAGTCTCATGTCTAGTCTCTAGTC 58.052 42.308 15.80 0.21 34.85 2.59
46 47 7.015292 CCTCTAGTCTCATGTCTAGTCTCTAGT 59.985 44.444 15.80 0.00 34.85 2.57
47 48 7.378966 CCTCTAGTCTCATGTCTAGTCTCTAG 58.621 46.154 15.80 0.00 34.85 2.43
48 49 6.239487 GCCTCTAGTCTCATGTCTAGTCTCTA 60.239 46.154 15.80 0.00 34.85 2.43
49 50 5.454755 GCCTCTAGTCTCATGTCTAGTCTCT 60.455 48.000 15.80 0.00 34.85 3.10
50 51 4.755123 GCCTCTAGTCTCATGTCTAGTCTC 59.245 50.000 15.80 7.65 34.85 3.36
51 52 4.714632 GCCTCTAGTCTCATGTCTAGTCT 58.285 47.826 15.80 4.45 34.85 3.24
52 53 3.496884 CGCCTCTAGTCTCATGTCTAGTC 59.503 52.174 15.80 0.00 34.85 2.59
53 54 3.134985 TCGCCTCTAGTCTCATGTCTAGT 59.865 47.826 15.80 1.71 34.85 2.57
54 55 3.496884 GTCGCCTCTAGTCTCATGTCTAG 59.503 52.174 12.52 12.52 34.66 2.43
55 56 3.118371 TGTCGCCTCTAGTCTCATGTCTA 60.118 47.826 0.00 0.00 0.00 2.59
56 57 2.294074 GTCGCCTCTAGTCTCATGTCT 58.706 52.381 0.00 0.00 0.00 3.41
57 58 2.017782 TGTCGCCTCTAGTCTCATGTC 58.982 52.381 0.00 0.00 0.00 3.06
58 59 1.746220 GTGTCGCCTCTAGTCTCATGT 59.254 52.381 0.00 0.00 0.00 3.21
59 60 1.745653 TGTGTCGCCTCTAGTCTCATG 59.254 52.381 0.00 0.00 0.00 3.07
60 61 2.130272 TGTGTCGCCTCTAGTCTCAT 57.870 50.000 0.00 0.00 0.00 2.90
61 62 1.905637 TTGTGTCGCCTCTAGTCTCA 58.094 50.000 0.00 0.00 0.00 3.27
62 63 2.164624 ACATTGTGTCGCCTCTAGTCTC 59.835 50.000 0.00 0.00 0.00 3.36
63 64 2.171840 ACATTGTGTCGCCTCTAGTCT 58.828 47.619 0.00 0.00 0.00 3.24
64 65 2.656560 ACATTGTGTCGCCTCTAGTC 57.343 50.000 0.00 0.00 0.00 2.59
65 66 2.299013 TCAACATTGTGTCGCCTCTAGT 59.701 45.455 0.00 0.00 0.00 2.57
66 67 2.959516 TCAACATTGTGTCGCCTCTAG 58.040 47.619 0.00 0.00 0.00 2.43
67 68 3.394674 TTCAACATTGTGTCGCCTCTA 57.605 42.857 0.00 0.00 0.00 2.43
68 69 2.254546 TTCAACATTGTGTCGCCTCT 57.745 45.000 0.00 0.00 0.00 3.69
69 70 3.236816 CAATTCAACATTGTGTCGCCTC 58.763 45.455 0.00 0.00 0.00 4.70
70 71 2.622942 ACAATTCAACATTGTGTCGCCT 59.377 40.909 0.00 0.00 40.37 5.52
71 72 3.011949 ACAATTCAACATTGTGTCGCC 57.988 42.857 0.00 0.00 40.37 5.54
77 78 4.405358 AGGTTCCACACAATTCAACATTGT 59.595 37.500 0.00 0.00 42.38 2.71
78 79 4.947645 AGGTTCCACACAATTCAACATTG 58.052 39.130 0.00 0.00 35.29 2.82
79 80 6.549364 TCTTAGGTTCCACACAATTCAACATT 59.451 34.615 0.00 0.00 0.00 2.71
80 81 6.068010 TCTTAGGTTCCACACAATTCAACAT 58.932 36.000 0.00 0.00 0.00 2.71
81 82 5.441500 TCTTAGGTTCCACACAATTCAACA 58.558 37.500 0.00 0.00 0.00 3.33
82 83 6.262273 TCTTCTTAGGTTCCACACAATTCAAC 59.738 38.462 0.00 0.00 0.00 3.18
83 84 6.361433 TCTTCTTAGGTTCCACACAATTCAA 58.639 36.000 0.00 0.00 0.00 2.69
84 85 5.935945 TCTTCTTAGGTTCCACACAATTCA 58.064 37.500 0.00 0.00 0.00 2.57
85 86 6.877611 TTCTTCTTAGGTTCCACACAATTC 57.122 37.500 0.00 0.00 0.00 2.17
86 87 7.060421 TCTTTCTTCTTAGGTTCCACACAATT 58.940 34.615 0.00 0.00 0.00 2.32
87 88 6.601332 TCTTTCTTCTTAGGTTCCACACAAT 58.399 36.000 0.00 0.00 0.00 2.71
88 89 5.996644 TCTTTCTTCTTAGGTTCCACACAA 58.003 37.500 0.00 0.00 0.00 3.33
89 90 5.623956 TCTTTCTTCTTAGGTTCCACACA 57.376 39.130 0.00 0.00 0.00 3.72
90 91 6.017852 CACTTCTTTCTTCTTAGGTTCCACAC 60.018 42.308 0.00 0.00 0.00 3.82
91 92 6.055588 CACTTCTTTCTTCTTAGGTTCCACA 58.944 40.000 0.00 0.00 0.00 4.17
92 93 6.017852 CACACTTCTTTCTTCTTAGGTTCCAC 60.018 42.308 0.00 0.00 0.00 4.02
93 94 6.055588 CACACTTCTTTCTTCTTAGGTTCCA 58.944 40.000 0.00 0.00 0.00 3.53
94 95 5.049336 GCACACTTCTTTCTTCTTAGGTTCC 60.049 44.000 0.00 0.00 0.00 3.62
95 96 5.527582 TGCACACTTCTTTCTTCTTAGGTTC 59.472 40.000 0.00 0.00 0.00 3.62
96 97 5.437060 TGCACACTTCTTTCTTCTTAGGTT 58.563 37.500 0.00 0.00 0.00 3.50
97 98 5.036117 TGCACACTTCTTTCTTCTTAGGT 57.964 39.130 0.00 0.00 0.00 3.08
98 99 5.561725 GCTTGCACACTTCTTTCTTCTTAGG 60.562 44.000 0.00 0.00 0.00 2.69
99 100 5.238214 AGCTTGCACACTTCTTTCTTCTTAG 59.762 40.000 0.00 0.00 0.00 2.18
100 101 5.126067 AGCTTGCACACTTCTTTCTTCTTA 58.874 37.500 0.00 0.00 0.00 2.10
101 102 3.950395 AGCTTGCACACTTCTTTCTTCTT 59.050 39.130 0.00 0.00 0.00 2.52
102 103 3.549794 AGCTTGCACACTTCTTTCTTCT 58.450 40.909 0.00 0.00 0.00 2.85
103 104 3.978718 AGCTTGCACACTTCTTTCTTC 57.021 42.857 0.00 0.00 0.00 2.87
104 105 3.696051 TCAAGCTTGCACACTTCTTTCTT 59.304 39.130 21.99 0.00 0.00 2.52
105 106 3.282021 TCAAGCTTGCACACTTCTTTCT 58.718 40.909 21.99 0.00 0.00 2.52
106 107 3.313526 TCTCAAGCTTGCACACTTCTTTC 59.686 43.478 21.99 0.00 0.00 2.62
107 108 3.282021 TCTCAAGCTTGCACACTTCTTT 58.718 40.909 21.99 0.00 0.00 2.52
108 109 2.923121 TCTCAAGCTTGCACACTTCTT 58.077 42.857 21.99 0.00 0.00 2.52
109 110 2.627515 TCTCAAGCTTGCACACTTCT 57.372 45.000 21.99 0.00 0.00 2.85
110 111 2.615912 ACTTCTCAAGCTTGCACACTTC 59.384 45.455 21.99 0.00 0.00 3.01
111 112 2.615912 GACTTCTCAAGCTTGCACACTT 59.384 45.455 21.99 3.88 0.00 3.16
112 113 2.216898 GACTTCTCAAGCTTGCACACT 58.783 47.619 21.99 3.60 0.00 3.55
113 114 1.942657 TGACTTCTCAAGCTTGCACAC 59.057 47.619 21.99 10.59 0.00 3.82
114 115 2.330440 TGACTTCTCAAGCTTGCACA 57.670 45.000 21.99 11.24 0.00 4.57
115 116 3.911661 ATTGACTTCTCAAGCTTGCAC 57.088 42.857 21.99 8.99 39.83 4.57
116 117 3.884693 TCAATTGACTTCTCAAGCTTGCA 59.115 39.130 21.99 9.72 39.83 4.08
117 118 4.214971 TCTCAATTGACTTCTCAAGCTTGC 59.785 41.667 21.99 7.05 39.83 4.01
118 119 5.936686 TCTCAATTGACTTCTCAAGCTTG 57.063 39.130 20.81 20.81 39.83 4.01
119 120 6.949352 TTTCTCAATTGACTTCTCAAGCTT 57.051 33.333 3.38 0.00 39.83 3.74
120 121 6.949352 TTTTCTCAATTGACTTCTCAAGCT 57.051 33.333 3.38 0.00 39.83 3.74
121 122 9.683069 TTTATTTTCTCAATTGACTTCTCAAGC 57.317 29.630 3.38 0.00 39.83 4.01
177 178 2.270352 TAACTGCTCCCACAAGTTGG 57.730 50.000 7.96 0.00 46.47 3.77
178 179 2.489329 CCATAACTGCTCCCACAAGTTG 59.511 50.000 0.00 0.00 0.00 3.16
179 180 2.375174 TCCATAACTGCTCCCACAAGTT 59.625 45.455 0.00 0.00 0.00 2.66
180 181 1.985159 TCCATAACTGCTCCCACAAGT 59.015 47.619 0.00 0.00 0.00 3.16
181 182 2.787473 TCCATAACTGCTCCCACAAG 57.213 50.000 0.00 0.00 0.00 3.16
182 183 3.517296 TTTCCATAACTGCTCCCACAA 57.483 42.857 0.00 0.00 0.00 3.33
183 184 3.737559 ATTTCCATAACTGCTCCCACA 57.262 42.857 0.00 0.00 0.00 4.17
184 185 3.131046 CCAATTTCCATAACTGCTCCCAC 59.869 47.826 0.00 0.00 0.00 4.61
185 186 3.011144 TCCAATTTCCATAACTGCTCCCA 59.989 43.478 0.00 0.00 0.00 4.37
186 187 3.631250 TCCAATTTCCATAACTGCTCCC 58.369 45.455 0.00 0.00 0.00 4.30
187 188 5.859205 AATCCAATTTCCATAACTGCTCC 57.141 39.130 0.00 0.00 0.00 4.70
204 205 9.739276 ACATTTAGACACTTCAATAGAAATCCA 57.261 29.630 0.00 0.00 32.35 3.41
205 206 9.994432 CACATTTAGACACTTCAATAGAAATCC 57.006 33.333 0.00 0.00 32.35 3.01
206 207 9.994432 CCACATTTAGACACTTCAATAGAAATC 57.006 33.333 0.00 0.00 32.35 2.17
207 208 9.520515 ACCACATTTAGACACTTCAATAGAAAT 57.479 29.630 0.00 0.00 32.35 2.17
208 209 8.918202 ACCACATTTAGACACTTCAATAGAAA 57.082 30.769 0.00 0.00 32.35 2.52
209 210 8.918202 AACCACATTTAGACACTTCAATAGAA 57.082 30.769 0.00 0.00 0.00 2.10
210 211 8.375506 AGAACCACATTTAGACACTTCAATAGA 58.624 33.333 0.00 0.00 0.00 1.98
211 212 8.553459 AGAACCACATTTAGACACTTCAATAG 57.447 34.615 0.00 0.00 0.00 1.73
212 213 8.918202 AAGAACCACATTTAGACACTTCAATA 57.082 30.769 0.00 0.00 0.00 1.90
213 214 7.823745 AAGAACCACATTTAGACACTTCAAT 57.176 32.000 0.00 0.00 0.00 2.57
214 215 7.639113 AAAGAACCACATTTAGACACTTCAA 57.361 32.000 0.00 0.00 0.00 2.69
215 216 7.639113 AAAAGAACCACATTTAGACACTTCA 57.361 32.000 0.00 0.00 0.00 3.02
240 241 5.821516 TTGCTAAGAGAACCGAACAAAAA 57.178 34.783 0.00 0.00 0.00 1.94
241 242 5.587043 TCTTTGCTAAGAGAACCGAACAAAA 59.413 36.000 6.50 0.00 35.49 2.44
242 243 5.120399 TCTTTGCTAAGAGAACCGAACAAA 58.880 37.500 6.50 0.00 35.49 2.83
243 244 4.699637 TCTTTGCTAAGAGAACCGAACAA 58.300 39.130 6.50 0.00 35.49 2.83
244 245 4.330944 TCTTTGCTAAGAGAACCGAACA 57.669 40.909 6.50 0.00 35.49 3.18
245 246 4.376109 CGTTCTTTGCTAAGAGAACCGAAC 60.376 45.833 10.46 4.08 45.58 3.95
246 247 3.739300 CGTTCTTTGCTAAGAGAACCGAA 59.261 43.478 10.46 0.00 45.58 4.30
247 248 3.005050 TCGTTCTTTGCTAAGAGAACCGA 59.995 43.478 10.46 13.02 45.58 4.69
248 249 3.314553 TCGTTCTTTGCTAAGAGAACCG 58.685 45.455 10.46 11.28 45.58 4.44
249 250 4.929808 TCATCGTTCTTTGCTAAGAGAACC 59.070 41.667 10.46 1.04 45.58 3.62
250 251 6.467723 TTCATCGTTCTTTGCTAAGAGAAC 57.532 37.500 10.46 10.28 45.14 3.01
251 252 7.672983 AATTCATCGTTCTTTGCTAAGAGAA 57.327 32.000 10.46 10.40 41.25 2.87
252 253 8.820933 CATAATTCATCGTTCTTTGCTAAGAGA 58.179 33.333 10.46 6.52 41.25 3.10
253 254 8.607459 ACATAATTCATCGTTCTTTGCTAAGAG 58.393 33.333 10.46 1.26 41.25 2.85
254 255 8.492673 ACATAATTCATCGTTCTTTGCTAAGA 57.507 30.769 6.50 6.50 38.61 2.10
255 256 9.638300 GTACATAATTCATCGTTCTTTGCTAAG 57.362 33.333 1.04 1.04 0.00 2.18
256 257 9.378551 AGTACATAATTCATCGTTCTTTGCTAA 57.621 29.630 0.00 0.00 0.00 3.09
257 258 8.942338 AGTACATAATTCATCGTTCTTTGCTA 57.058 30.769 0.00 0.00 0.00 3.49
258 259 7.849804 AGTACATAATTCATCGTTCTTTGCT 57.150 32.000 0.00 0.00 0.00 3.91
259 260 9.586150 CATAGTACATAATTCATCGTTCTTTGC 57.414 33.333 0.00 0.00 0.00 3.68
280 281 9.685276 TTGAAGGACATTTCAATACATCATAGT 57.315 29.630 0.00 0.00 40.95 2.12
314 315 9.757227 TCACCGAAACAAATTTCATTATTTCTT 57.243 25.926 0.00 0.00 43.90 2.52
315 316 9.191995 GTCACCGAAACAAATTTCATTATTTCT 57.808 29.630 0.00 0.00 43.90 2.52
316 317 8.432359 GGTCACCGAAACAAATTTCATTATTTC 58.568 33.333 0.00 0.00 43.90 2.17
317 318 8.305441 GGTCACCGAAACAAATTTCATTATTT 57.695 30.769 0.00 0.00 43.90 1.40
318 319 7.883229 GGTCACCGAAACAAATTTCATTATT 57.117 32.000 0.00 0.00 43.90 1.40
336 337 3.363341 TGCATTTCTTTTTCGGTCACC 57.637 42.857 0.00 0.00 0.00 4.02
337 338 5.461737 TCAAATGCATTTCTTTTTCGGTCAC 59.538 36.000 21.70 0.00 0.00 3.67
338 339 5.461737 GTCAAATGCATTTCTTTTTCGGTCA 59.538 36.000 21.70 0.00 0.00 4.02
339 340 5.461737 TGTCAAATGCATTTCTTTTTCGGTC 59.538 36.000 21.70 6.88 0.00 4.79
340 341 5.355596 TGTCAAATGCATTTCTTTTTCGGT 58.644 33.333 21.70 0.00 0.00 4.69
341 342 5.903764 TGTCAAATGCATTTCTTTTTCGG 57.096 34.783 21.70 8.44 0.00 4.30
342 343 8.770850 AAATTGTCAAATGCATTTCTTTTTCG 57.229 26.923 21.70 9.15 0.00 3.46
345 346 9.857957 ACAAAAATTGTCAAATGCATTTCTTTT 57.142 22.222 21.70 16.84 40.56 2.27
347 348 9.934190 GTACAAAAATTGTCAAATGCATTTCTT 57.066 25.926 21.70 7.90 44.12 2.52
348 349 9.328845 AGTACAAAAATTGTCAAATGCATTTCT 57.671 25.926 21.70 7.90 44.12 2.52
349 350 9.584839 GAGTACAAAAATTGTCAAATGCATTTC 57.415 29.630 21.70 12.27 44.12 2.17
350 351 9.328845 AGAGTACAAAAATTGTCAAATGCATTT 57.671 25.926 18.99 18.99 44.12 2.32
351 352 8.891671 AGAGTACAAAAATTGTCAAATGCATT 57.108 26.923 5.99 5.99 44.12 3.56
352 353 9.410556 GTAGAGTACAAAAATTGTCAAATGCAT 57.589 29.630 0.00 0.00 44.12 3.96
353 354 8.629158 AGTAGAGTACAAAAATTGTCAAATGCA 58.371 29.630 0.00 0.00 44.12 3.96
369 370 9.842775 TCGATCTCCTAAATTTAGTAGAGTACA 57.157 33.333 20.89 9.09 30.69 2.90
372 373 8.983702 AGTCGATCTCCTAAATTTAGTAGAGT 57.016 34.615 20.89 12.03 30.69 3.24
377 378 9.984190 GGATTTAGTCGATCTCCTAAATTTAGT 57.016 33.333 20.99 5.29 41.55 2.24
378 379 9.130312 CGGATTTAGTCGATCTCCTAAATTTAG 57.870 37.037 16.90 16.90 41.55 1.85
379 380 8.086522 CCGGATTTAGTCGATCTCCTAAATTTA 58.913 37.037 19.30 0.00 41.55 1.40
380 381 6.929606 CCGGATTTAGTCGATCTCCTAAATTT 59.070 38.462 19.30 0.00 41.55 1.82
381 382 6.456501 CCGGATTTAGTCGATCTCCTAAATT 58.543 40.000 19.30 9.65 41.55 1.82
382 383 5.567025 GCCGGATTTAGTCGATCTCCTAAAT 60.567 44.000 18.77 18.77 43.21 1.40
383 384 4.261909 GCCGGATTTAGTCGATCTCCTAAA 60.262 45.833 5.05 13.04 37.50 1.85
384 385 3.255149 GCCGGATTTAGTCGATCTCCTAA 59.745 47.826 5.05 0.00 0.00 2.69
385 386 2.818432 GCCGGATTTAGTCGATCTCCTA 59.182 50.000 5.05 0.00 0.00 2.94
386 387 1.614413 GCCGGATTTAGTCGATCTCCT 59.386 52.381 5.05 0.00 0.00 3.69
387 388 1.336980 GGCCGGATTTAGTCGATCTCC 60.337 57.143 5.05 0.00 0.00 3.71
388 389 1.340248 TGGCCGGATTTAGTCGATCTC 59.660 52.381 5.05 0.00 0.00 2.75
389 390 1.410004 TGGCCGGATTTAGTCGATCT 58.590 50.000 5.05 0.00 0.00 2.75
390 391 2.234300 TTGGCCGGATTTAGTCGATC 57.766 50.000 5.05 0.00 0.00 3.69
391 392 2.702592 TTTGGCCGGATTTAGTCGAT 57.297 45.000 5.05 0.00 0.00 3.59
392 393 2.476126 TTTTGGCCGGATTTAGTCGA 57.524 45.000 5.05 0.00 0.00 4.20
423 424 8.623030 CCGAGTAAAGCTTAGTAGAGTATTTCT 58.377 37.037 0.00 0.00 40.06 2.52
424 425 7.379262 GCCGAGTAAAGCTTAGTAGAGTATTTC 59.621 40.741 0.00 0.00 0.00 2.17
425 426 7.068470 AGCCGAGTAAAGCTTAGTAGAGTATTT 59.932 37.037 0.00 0.00 35.22 1.40
426 427 6.546772 AGCCGAGTAAAGCTTAGTAGAGTATT 59.453 38.462 0.00 0.00 35.22 1.89
427 428 6.016943 CAGCCGAGTAAAGCTTAGTAGAGTAT 60.017 42.308 0.00 0.00 37.18 2.12
428 429 5.296283 CAGCCGAGTAAAGCTTAGTAGAGTA 59.704 44.000 0.00 0.00 37.18 2.59
429 430 4.096682 CAGCCGAGTAAAGCTTAGTAGAGT 59.903 45.833 0.00 0.00 37.18 3.24
430 431 4.498345 CCAGCCGAGTAAAGCTTAGTAGAG 60.498 50.000 0.00 0.00 37.18 2.43
431 432 3.380637 CCAGCCGAGTAAAGCTTAGTAGA 59.619 47.826 0.00 0.00 37.18 2.59
432 433 3.380637 TCCAGCCGAGTAAAGCTTAGTAG 59.619 47.826 0.00 0.00 37.18 2.57
433 434 3.359033 TCCAGCCGAGTAAAGCTTAGTA 58.641 45.455 0.00 0.00 37.18 1.82
434 435 2.176889 TCCAGCCGAGTAAAGCTTAGT 58.823 47.619 0.00 0.00 37.18 2.24
435 436 2.961526 TCCAGCCGAGTAAAGCTTAG 57.038 50.000 0.00 0.00 37.18 2.18
436 437 3.958798 AGTATCCAGCCGAGTAAAGCTTA 59.041 43.478 0.00 0.00 37.18 3.09
437 438 2.766828 AGTATCCAGCCGAGTAAAGCTT 59.233 45.455 0.00 0.00 37.18 3.74
438 439 2.362717 GAGTATCCAGCCGAGTAAAGCT 59.637 50.000 0.00 0.00 40.89 3.74
439 440 2.745102 GAGTATCCAGCCGAGTAAAGC 58.255 52.381 0.00 0.00 0.00 3.51
453 454 6.864165 CGGTCTGCTAAAAATAGAGGAGTATC 59.136 42.308 0.00 0.00 33.24 2.24
454 455 6.239345 CCGGTCTGCTAAAAATAGAGGAGTAT 60.239 42.308 0.00 0.00 33.24 2.12
455 456 5.068723 CCGGTCTGCTAAAAATAGAGGAGTA 59.931 44.000 0.00 0.00 33.24 2.59
456 457 4.141914 CCGGTCTGCTAAAAATAGAGGAGT 60.142 45.833 0.00 0.00 33.24 3.85
457 458 4.372656 CCGGTCTGCTAAAAATAGAGGAG 58.627 47.826 0.00 0.00 32.76 3.69
458 459 3.431766 GCCGGTCTGCTAAAAATAGAGGA 60.432 47.826 1.90 0.00 0.00 3.71
459 460 2.872858 GCCGGTCTGCTAAAAATAGAGG 59.127 50.000 1.90 0.00 0.00 3.69
460 461 3.798202 AGCCGGTCTGCTAAAAATAGAG 58.202 45.455 1.90 0.00 40.56 2.43
461 462 3.906720 AGCCGGTCTGCTAAAAATAGA 57.093 42.857 1.90 0.00 40.56 1.98
462 463 4.945246 TCTAGCCGGTCTGCTAAAAATAG 58.055 43.478 1.90 0.00 42.93 1.73
463 464 4.404715 ACTCTAGCCGGTCTGCTAAAAATA 59.595 41.667 1.90 0.00 42.93 1.40
464 465 3.197983 ACTCTAGCCGGTCTGCTAAAAAT 59.802 43.478 1.90 0.00 42.93 1.82
465 466 2.565834 ACTCTAGCCGGTCTGCTAAAAA 59.434 45.455 1.90 0.00 42.93 1.94
466 467 2.176889 ACTCTAGCCGGTCTGCTAAAA 58.823 47.619 1.90 0.00 42.93 1.52
467 468 1.848652 ACTCTAGCCGGTCTGCTAAA 58.151 50.000 1.90 0.00 42.93 1.85
468 469 1.476891 CAACTCTAGCCGGTCTGCTAA 59.523 52.381 1.90 0.00 42.93 3.09
469 470 1.103803 CAACTCTAGCCGGTCTGCTA 58.896 55.000 1.90 0.00 42.75 3.49
470 471 1.893786 CAACTCTAGCCGGTCTGCT 59.106 57.895 1.90 0.00 45.38 4.24
471 472 1.811679 GCAACTCTAGCCGGTCTGC 60.812 63.158 1.90 0.00 0.00 4.26
472 473 0.179124 GAGCAACTCTAGCCGGTCTG 60.179 60.000 1.90 0.00 0.00 3.51
473 474 0.323908 AGAGCAACTCTAGCCGGTCT 60.324 55.000 1.90 3.10 39.28 3.85
474 475 0.101579 GAGAGCAACTCTAGCCGGTC 59.898 60.000 1.90 0.00 41.35 4.79
475 476 0.612174 TGAGAGCAACTCTAGCCGGT 60.612 55.000 1.90 0.00 41.35 5.28
476 477 0.532573 TTGAGAGCAACTCTAGCCGG 59.467 55.000 0.00 0.00 41.35 6.13
477 478 1.996191 GTTTGAGAGCAACTCTAGCCG 59.004 52.381 11.18 0.00 41.35 5.52
478 479 3.045601 TGTTTGAGAGCAACTCTAGCC 57.954 47.619 11.18 0.00 41.35 3.93
479 480 6.727824 TTATTGTTTGAGAGCAACTCTAGC 57.272 37.500 11.18 7.18 41.35 3.42
480 481 7.550551 TCCATTATTGTTTGAGAGCAACTCTAG 59.449 37.037 11.18 0.00 41.35 2.43
481 482 7.394016 TCCATTATTGTTTGAGAGCAACTCTA 58.606 34.615 11.18 2.59 41.35 2.43
482 483 6.240894 TCCATTATTGTTTGAGAGCAACTCT 58.759 36.000 11.18 0.00 44.28 3.24
483 484 6.372659 TCTCCATTATTGTTTGAGAGCAACTC 59.627 38.462 4.35 4.35 45.11 3.01
484 485 6.240894 TCTCCATTATTGTTTGAGAGCAACT 58.759 36.000 0.00 0.00 32.79 3.16
485 486 6.500684 TCTCCATTATTGTTTGAGAGCAAC 57.499 37.500 0.00 0.00 32.79 4.17
486 487 7.370383 GTTTCTCCATTATTGTTTGAGAGCAA 58.630 34.615 0.00 0.00 33.92 3.91
487 488 6.071952 GGTTTCTCCATTATTGTTTGAGAGCA 60.072 38.462 0.00 0.00 33.92 4.26
488 489 6.151817 AGGTTTCTCCATTATTGTTTGAGAGC 59.848 38.462 0.00 0.00 39.02 4.09
489 490 7.693969 AGGTTTCTCCATTATTGTTTGAGAG 57.306 36.000 0.00 0.00 39.02 3.20
490 491 9.753674 ATTAGGTTTCTCCATTATTGTTTGAGA 57.246 29.630 0.00 0.00 39.02 3.27
492 493 8.966868 GGATTAGGTTTCTCCATTATTGTTTGA 58.033 33.333 0.00 0.00 39.02 2.69
493 494 8.748412 TGGATTAGGTTTCTCCATTATTGTTTG 58.252 33.333 0.00 0.00 39.02 2.93
583 585 6.821388 AGATATCATCTCCAGTGGTAAACAC 58.179 40.000 9.54 0.00 42.53 3.32
605 610 5.505819 CGAAGAACCATATAGCGTCTTGAGA 60.506 44.000 0.00 0.00 0.00 3.27
623 628 8.846211 ACAATCAAGAAATTTACTTCCGAAGAA 58.154 29.630 15.23 0.03 0.00 2.52
651 656 8.971073 AGCTATTTGGCTTCTTTTATTGTATGT 58.029 29.630 0.00 0.00 39.86 2.29
668 675 3.119849 CCCGTGACTTCAAAGCTATTTGG 60.120 47.826 0.00 0.00 44.93 3.28
669 676 3.119849 CCCCGTGACTTCAAAGCTATTTG 60.120 47.826 0.00 0.00 45.98 2.32
719 1064 4.504864 CCACTAACTGGAGATTGTGTGGAA 60.505 45.833 0.00 0.00 43.95 3.53
768 1125 4.869861 GCCTCTTTGTTTGTTCACATTTGT 59.130 37.500 0.00 0.00 0.00 2.83
809 1166 9.650539 GTGTGATGTGATCAGCTATTTATAGAT 57.349 33.333 0.00 0.00 40.53 1.98
817 1174 6.416631 ACATAGTGTGATGTGATCAGCTAT 57.583 37.500 0.00 0.00 40.53 2.97
823 1180 9.539825 AGAGAATAAACATAGTGTGATGTGATC 57.460 33.333 0.00 0.00 39.99 2.92
863 1220 6.723298 TGGTTGAACTGAATGGTTTTGTAT 57.277 33.333 0.00 0.00 0.00 2.29
1085 2324 1.459592 GTGGCACAGTTGTATCGTGAC 59.540 52.381 13.86 0.00 41.80 3.67
1271 2510 5.209818 TCGGGTATTCATTCCATACTCAC 57.790 43.478 0.00 0.00 29.14 3.51
1292 2532 9.274065 CGTGGAAGTAAAAGCAATATAAACTTC 57.726 33.333 0.00 0.00 40.22 3.01
1397 2648 5.426509 ACATTCCTGAGATCTTGATGGTGTA 59.573 40.000 0.00 0.00 0.00 2.90
1625 2904 3.799366 TGCGGATCACGGTTTTATACAT 58.201 40.909 0.00 0.00 44.51 2.29
1634 2914 1.741145 GGTTATTTTGCGGATCACGGT 59.259 47.619 0.00 0.00 44.51 4.83
1679 2959 2.340443 GTCTGATCGGGCCGGATC 59.660 66.667 34.88 34.88 42.52 3.36
2022 3413 0.451783 GAAATGCGAAATCCAGCCGT 59.548 50.000 0.00 0.00 0.00 5.68
2056 3452 3.520862 AATCCATGGCTTGGCGCG 61.521 61.111 14.30 0.00 46.01 6.86
2111 3518 3.814005 ACAAGACAAACGAGTACCTGT 57.186 42.857 0.00 0.00 0.00 4.00
2120 3527 0.433492 CGACGGCTACAAGACAAACG 59.567 55.000 0.00 0.00 0.00 3.60
2128 3535 1.372004 CCAACGACGACGGCTACAA 60.372 57.895 12.58 0.00 44.46 2.41
2144 3554 1.544724 GTATCCTTGCAGGCAAACCA 58.455 50.000 8.20 0.00 39.06 3.67
2153 3563 4.849310 GCCGGCCGTATCCTTGCA 62.849 66.667 26.12 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.