Multiple sequence alignment - TraesCS2B01G059200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G059200 chr2B 100.000 2339 0 0 1 2339 28767802 28770140 0.000000e+00 4320.0
1 TraesCS2B01G059200 chr2B 87.135 342 33 7 997 1337 28893654 28893323 6.100000e-101 377.0
2 TraesCS2B01G059200 chr2B 87.149 249 27 3 1100 1347 100024818 100025062 6.370000e-71 278.0
3 TraesCS2B01G059200 chr2B 86.056 251 31 2 1090 1339 100030121 100029874 1.380000e-67 267.0
4 TraesCS2B01G059200 chr2B 88.722 133 14 1 1343 1475 776888872 776888741 6.690000e-36 161.0
5 TraesCS2B01G059200 chrUn 92.421 818 53 3 540 1352 319705669 319704856 0.000000e+00 1158.0
6 TraesCS2B01G059200 chrUn 92.421 818 53 3 540 1352 330461042 330461855 0.000000e+00 1158.0
7 TraesCS2B01G059200 chrUn 89.921 764 48 6 1581 2339 319704843 319704104 0.000000e+00 957.0
8 TraesCS2B01G059200 chrUn 89.831 767 49 6 1578 2339 330461865 330462607 0.000000e+00 957.0
9 TraesCS2B01G059200 chrUn 84.615 312 34 7 155 465 319705980 319705682 4.890000e-77 298.0
10 TraesCS2B01G059200 chrUn 84.615 312 34 7 155 465 330460731 330461029 4.890000e-77 298.0
11 TraesCS2B01G059200 chr2A 92.055 793 56 3 548 1333 18413652 18414444 0.000000e+00 1109.0
12 TraesCS2B01G059200 chr2A 83.969 262 24 9 148 405 18413338 18413585 3.890000e-58 235.0
13 TraesCS2B01G059200 chr2A 100.000 28 0 0 454 481 133463790 133463817 4.000000e-03 52.8
14 TraesCS2B01G059200 chr2D 86.842 342 37 6 997 1337 17025232 17024898 2.190000e-100 375.0
15 TraesCS2B01G059200 chr2D 85.887 248 32 1 1100 1347 63908690 63908934 6.410000e-66 261.0
16 TraesCS2B01G059200 chr2D 85.714 84 12 0 1493 1576 294976038 294975955 3.200000e-14 89.8
17 TraesCS2B01G059200 chr4D 86.992 246 32 0 1100 1345 474918747 474918992 6.370000e-71 278.0
18 TraesCS2B01G059200 chr4D 87.500 136 15 2 1341 1475 58389387 58389253 3.110000e-34 156.0
19 TraesCS2B01G059200 chr4D 86.047 86 11 1 1493 1577 391053787 391053872 8.900000e-15 91.6
20 TraesCS2B01G059200 chr3B 84.659 176 20 6 1355 1528 178387440 178387610 4.000000e-38 169.0
21 TraesCS2B01G059200 chr1B 89.764 127 11 2 1350 1475 97377240 97377115 6.690000e-36 161.0
22 TraesCS2B01G059200 chr1B 87.500 136 15 2 1341 1475 284020206 284020072 3.110000e-34 156.0
23 TraesCS2B01G059200 chr1B 87.591 137 13 4 1341 1475 285606821 285606955 3.110000e-34 156.0
24 TraesCS2B01G059200 chr1A 88.636 132 13 2 1345 1475 3261587 3261717 2.410000e-35 159.0
25 TraesCS2B01G059200 chr3A 88.060 134 14 2 1343 1475 644809122 644809254 8.650000e-35 158.0
26 TraesCS2B01G059200 chr5B 86.713 143 15 3 1350 1491 383524779 383524640 3.110000e-34 156.0
27 TraesCS2B01G059200 chr7B 90.909 88 5 3 1493 1578 676287507 676287421 5.280000e-22 115.0
28 TraesCS2B01G059200 chr7B 89.011 91 8 2 1488 1577 521580069 521579980 6.830000e-21 111.0
29 TraesCS2B01G059200 chr5A 88.172 93 8 3 1488 1578 464174753 464174844 8.840000e-20 108.0
30 TraesCS2B01G059200 chr6B 89.157 83 6 3 1488 1568 507374900 507374981 1.480000e-17 100.0
31 TraesCS2B01G059200 chr4B 87.805 82 9 1 1488 1568 100851429 100851348 6.880000e-16 95.3
32 TraesCS2B01G059200 chr5D 83.505 97 15 1 1491 1586 446682634 446682538 3.200000e-14 89.8
33 TraesCS2B01G059200 chr7A 84.884 86 12 1 1494 1578 339886237 339886152 4.140000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G059200 chr2B 28767802 28770140 2338 False 4320.000000 4320 100.000000 1 2339 1 chr2B.!!$F1 2338
1 TraesCS2B01G059200 chrUn 319704104 319705980 1876 True 804.333333 1158 88.985667 155 2339 3 chrUn.!!$R1 2184
2 TraesCS2B01G059200 chrUn 330460731 330462607 1876 False 804.333333 1158 88.955667 155 2339 3 chrUn.!!$F1 2184
3 TraesCS2B01G059200 chr2A 18413338 18414444 1106 False 672.000000 1109 88.012000 148 1333 2 chr2A.!!$F2 1185

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.033011 AGGTGAGTGTAGCCTCGGAT 60.033 55.0 0.0 0.0 34.04 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2140 2188 0.174845 TGGATTAACGTGGAGCTCCG 59.825 55.0 27.43 18.56 39.43 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.785713 GTTGCCAACCAACGTATTGT 57.214 45.000 0.00 0.00 43.85 2.71
22 23 2.389998 GTTGCCAACCAACGTATTGTG 58.610 47.619 0.00 0.00 43.85 3.33
23 24 0.312416 TGCCAACCAACGTATTGTGC 59.688 50.000 0.00 1.54 33.60 4.57
24 25 0.388006 GCCAACCAACGTATTGTGCC 60.388 55.000 0.00 0.00 33.60 5.01
25 26 0.242555 CCAACCAACGTATTGTGCCC 59.757 55.000 0.00 0.00 33.60 5.36
26 27 0.109964 CAACCAACGTATTGTGCCCG 60.110 55.000 0.00 0.00 33.60 6.13
27 28 1.858372 AACCAACGTATTGTGCCCGC 61.858 55.000 0.00 0.00 33.60 6.13
28 29 2.483288 CAACGTATTGTGCCCGCC 59.517 61.111 0.00 0.00 0.00 6.13
29 30 2.748647 AACGTATTGTGCCCGCCC 60.749 61.111 0.00 0.00 0.00 6.13
30 31 3.554696 AACGTATTGTGCCCGCCCA 62.555 57.895 0.00 0.00 0.00 5.36
31 32 2.515991 CGTATTGTGCCCGCCCAT 60.516 61.111 0.00 0.00 0.00 4.00
32 33 2.118404 CGTATTGTGCCCGCCCATT 61.118 57.895 0.00 0.00 0.00 3.16
33 34 1.662438 CGTATTGTGCCCGCCCATTT 61.662 55.000 0.00 0.00 0.00 2.32
34 35 0.179113 GTATTGTGCCCGCCCATTTG 60.179 55.000 0.00 0.00 0.00 2.32
35 36 0.323816 TATTGTGCCCGCCCATTTGA 60.324 50.000 0.00 0.00 0.00 2.69
36 37 1.887344 ATTGTGCCCGCCCATTTGAC 61.887 55.000 0.00 0.00 0.00 3.18
37 38 2.676471 GTGCCCGCCCATTTGACT 60.676 61.111 0.00 0.00 0.00 3.41
38 39 2.676121 TGCCCGCCCATTTGACTG 60.676 61.111 0.00 0.00 0.00 3.51
39 40 3.451894 GCCCGCCCATTTGACTGG 61.452 66.667 0.00 0.00 35.95 4.00
47 48 2.882927 CCATTTGACTGGGCATGATG 57.117 50.000 0.00 0.00 32.28 3.07
48 49 1.411246 CCATTTGACTGGGCATGATGG 59.589 52.381 0.00 5.40 32.28 3.51
49 50 2.380941 CATTTGACTGGGCATGATGGA 58.619 47.619 0.00 0.00 0.00 3.41
50 51 2.133281 TTTGACTGGGCATGATGGAG 57.867 50.000 0.00 0.00 0.00 3.86
51 52 0.256752 TTGACTGGGCATGATGGAGG 59.743 55.000 0.00 0.00 0.00 4.30
52 53 0.621280 TGACTGGGCATGATGGAGGA 60.621 55.000 0.00 0.00 0.00 3.71
53 54 0.108207 GACTGGGCATGATGGAGGAG 59.892 60.000 0.00 0.00 0.00 3.69
54 55 1.351080 ACTGGGCATGATGGAGGAGG 61.351 60.000 0.00 0.00 0.00 4.30
55 56 1.004626 TGGGCATGATGGAGGAGGA 59.995 57.895 0.00 0.00 0.00 3.71
56 57 1.058428 TGGGCATGATGGAGGAGGAG 61.058 60.000 0.00 0.00 0.00 3.69
57 58 1.072852 GGCATGATGGAGGAGGAGC 59.927 63.158 0.00 0.00 0.00 4.70
58 59 1.301558 GCATGATGGAGGAGGAGCG 60.302 63.158 0.00 0.00 0.00 5.03
59 60 1.370437 CATGATGGAGGAGGAGCGG 59.630 63.158 0.00 0.00 0.00 5.52
60 61 2.515071 ATGATGGAGGAGGAGCGGC 61.515 63.158 0.00 0.00 0.00 6.53
61 62 3.157252 GATGGAGGAGGAGCGGCA 61.157 66.667 1.45 0.00 0.00 5.69
62 63 2.447379 ATGGAGGAGGAGCGGCAT 60.447 61.111 1.45 0.00 0.00 4.40
63 64 2.447586 GATGGAGGAGGAGCGGCATC 62.448 65.000 1.45 0.00 0.00 3.91
68 69 3.934962 GAGGAGCGGCATCCCCTC 61.935 72.222 1.45 8.70 40.53 4.30
69 70 4.488911 AGGAGCGGCATCCCCTCT 62.489 66.667 1.45 0.00 40.53 3.69
70 71 2.524394 GGAGCGGCATCCCCTCTA 60.524 66.667 1.45 0.00 32.79 2.43
71 72 2.737830 GAGCGGCATCCCCTCTAC 59.262 66.667 1.45 0.00 0.00 2.59
72 73 3.214250 GAGCGGCATCCCCTCTACG 62.214 68.421 1.45 0.00 0.00 3.51
73 74 3.224324 GCGGCATCCCCTCTACGA 61.224 66.667 0.00 0.00 0.00 3.43
74 75 3.043419 CGGCATCCCCTCTACGAG 58.957 66.667 0.00 0.00 0.00 4.18
75 76 2.737830 GGCATCCCCTCTACGAGC 59.262 66.667 0.00 0.00 0.00 5.03
76 77 2.336809 GCATCCCCTCTACGAGCG 59.663 66.667 0.00 0.00 0.00 5.03
77 78 3.043419 CATCCCCTCTACGAGCGG 58.957 66.667 0.00 0.00 0.00 5.52
78 79 2.203509 ATCCCCTCTACGAGCGGG 60.204 66.667 9.74 9.74 39.98 6.13
79 80 2.764737 ATCCCCTCTACGAGCGGGA 61.765 63.158 16.99 16.99 42.96 5.14
80 81 2.700407 ATCCCCTCTACGAGCGGGAG 62.700 65.000 18.52 0.00 42.96 4.30
81 82 2.907917 CCCTCTACGAGCGGGAGG 60.908 72.222 19.69 19.69 42.96 4.30
82 83 2.907917 CCTCTACGAGCGGGAGGG 60.908 72.222 19.20 6.62 41.93 4.30
83 84 2.124236 CTCTACGAGCGGGAGGGT 60.124 66.667 0.00 0.00 0.00 4.34
84 85 2.124403 TCTACGAGCGGGAGGGTC 60.124 66.667 0.00 0.00 39.80 4.46
92 93 4.742201 CGGGAGGGTCGTGCAGTG 62.742 72.222 0.00 0.00 0.00 3.66
93 94 4.394712 GGGAGGGTCGTGCAGTGG 62.395 72.222 0.00 0.00 0.00 4.00
128 129 4.219846 GCAGAGCGCGTCATGCAG 62.220 66.667 21.14 2.93 46.97 4.41
129 130 3.561213 CAGAGCGCGTCATGCAGG 61.561 66.667 8.43 0.00 46.97 4.85
130 131 4.074526 AGAGCGCGTCATGCAGGT 62.075 61.111 8.43 0.00 46.97 4.00
131 132 3.857854 GAGCGCGTCATGCAGGTG 61.858 66.667 8.43 0.00 46.97 4.00
132 133 4.377708 AGCGCGTCATGCAGGTGA 62.378 61.111 8.43 0.00 46.97 4.02
133 134 3.857854 GCGCGTCATGCAGGTGAG 61.858 66.667 8.43 0.00 46.97 3.51
134 135 2.433145 CGCGTCATGCAGGTGAGT 60.433 61.111 0.00 0.00 46.97 3.41
135 136 2.733671 CGCGTCATGCAGGTGAGTG 61.734 63.158 0.00 0.00 46.97 3.51
136 137 1.669115 GCGTCATGCAGGTGAGTGT 60.669 57.895 0.00 0.00 45.45 3.55
137 138 0.389817 GCGTCATGCAGGTGAGTGTA 60.390 55.000 0.00 0.00 45.45 2.90
138 139 1.633561 CGTCATGCAGGTGAGTGTAG 58.366 55.000 0.00 0.00 0.00 2.74
139 140 1.363744 GTCATGCAGGTGAGTGTAGC 58.636 55.000 0.00 0.00 0.00 3.58
140 141 0.250234 TCATGCAGGTGAGTGTAGCC 59.750 55.000 0.00 0.00 0.00 3.93
141 142 0.251354 CATGCAGGTGAGTGTAGCCT 59.749 55.000 0.00 0.00 0.00 4.58
142 143 0.539051 ATGCAGGTGAGTGTAGCCTC 59.461 55.000 0.00 0.00 0.00 4.70
143 144 1.153745 GCAGGTGAGTGTAGCCTCG 60.154 63.158 0.00 0.00 34.04 4.63
144 145 1.513158 CAGGTGAGTGTAGCCTCGG 59.487 63.158 0.00 0.00 34.04 4.63
145 146 0.965866 CAGGTGAGTGTAGCCTCGGA 60.966 60.000 0.00 0.00 34.04 4.55
146 147 0.033011 AGGTGAGTGTAGCCTCGGAT 60.033 55.000 0.00 0.00 34.04 4.18
173 177 1.735559 GGCGACGTACCAACAGTCC 60.736 63.158 2.25 0.00 0.00 3.85
180 185 1.359168 GTACCAACAGTCCTTCCCCT 58.641 55.000 0.00 0.00 0.00 4.79
182 187 1.303643 CCAACAGTCCTTCCCCTGC 60.304 63.158 0.00 0.00 31.76 4.85
183 188 1.672356 CAACAGTCCTTCCCCTGCG 60.672 63.158 0.00 0.00 31.76 5.18
184 189 2.147387 AACAGTCCTTCCCCTGCGT 61.147 57.895 0.00 0.00 31.76 5.24
218 223 1.587043 TTGTCGACCTGAGCGAGGAG 61.587 60.000 14.12 5.54 46.33 3.69
219 224 1.745864 GTCGACCTGAGCGAGGAGA 60.746 63.158 3.51 7.51 46.33 3.71
220 225 1.745864 TCGACCTGAGCGAGGAGAC 60.746 63.158 11.46 2.71 46.33 3.36
221 226 2.795297 GACCTGAGCGAGGAGACG 59.205 66.667 11.46 0.00 46.33 4.18
222 227 1.745864 GACCTGAGCGAGGAGACGA 60.746 63.158 11.46 0.00 46.33 4.20
223 228 1.303398 ACCTGAGCGAGGAGACGAA 60.303 57.895 11.46 0.00 46.33 3.85
224 229 0.681564 ACCTGAGCGAGGAGACGAAT 60.682 55.000 11.46 0.00 46.33 3.34
225 230 0.248825 CCTGAGCGAGGAGACGAATG 60.249 60.000 0.00 0.00 46.33 2.67
226 231 0.735471 CTGAGCGAGGAGACGAATGA 59.265 55.000 0.00 0.00 35.09 2.57
316 321 3.447918 TGTAAGTGGACTATAAGCGGC 57.552 47.619 0.00 0.00 0.00 6.53
330 335 6.927381 ACTATAAGCGGCGTGTTTTATCTATT 59.073 34.615 9.37 0.00 0.00 1.73
331 336 8.084073 ACTATAAGCGGCGTGTTTTATCTATTA 58.916 33.333 9.37 0.00 0.00 0.98
337 342 6.347079 GCGGCGTGTTTTATCTATTATAAGCA 60.347 38.462 9.37 0.00 0.00 3.91
398 403 5.717038 AAGTTTCAAATTTGTTGGCTTCG 57.283 34.783 17.47 0.00 0.00 3.79
404 409 2.793278 ATTTGTTGGCTTCGTTGGAC 57.207 45.000 0.00 0.00 0.00 4.02
405 410 0.378962 TTTGTTGGCTTCGTTGGACG 59.621 50.000 0.00 0.00 44.19 4.79
406 411 2.054140 TTGTTGGCTTCGTTGGACGC 62.054 55.000 0.00 0.00 42.21 5.19
407 412 2.203084 TTGGCTTCGTTGGACGCA 60.203 55.556 0.00 0.00 42.21 5.24
408 413 1.599518 TTGGCTTCGTTGGACGCAT 60.600 52.632 0.00 0.00 42.21 4.73
409 414 1.573829 TTGGCTTCGTTGGACGCATC 61.574 55.000 0.00 0.00 42.21 3.91
410 415 1.741770 GGCTTCGTTGGACGCATCT 60.742 57.895 0.00 0.00 42.21 2.90
411 416 0.459585 GGCTTCGTTGGACGCATCTA 60.460 55.000 0.00 0.00 42.21 1.98
412 417 1.355971 GCTTCGTTGGACGCATCTAA 58.644 50.000 0.00 0.00 42.21 2.10
413 418 1.324736 GCTTCGTTGGACGCATCTAAG 59.675 52.381 0.00 0.00 42.21 2.18
414 419 1.927174 CTTCGTTGGACGCATCTAAGG 59.073 52.381 0.00 0.00 42.21 2.69
415 420 0.459585 TCGTTGGACGCATCTAAGGC 60.460 55.000 0.00 0.00 42.21 4.35
416 421 0.739462 CGTTGGACGCATCTAAGGCA 60.739 55.000 0.00 0.00 33.65 4.75
417 422 1.448985 GTTGGACGCATCTAAGGCAA 58.551 50.000 0.00 0.00 0.00 4.52
418 423 1.398390 GTTGGACGCATCTAAGGCAAG 59.602 52.381 0.00 0.00 0.00 4.01
419 424 0.744414 TGGACGCATCTAAGGCAAGC 60.744 55.000 0.00 0.00 0.00 4.01
420 425 1.440145 GGACGCATCTAAGGCAAGCC 61.440 60.000 2.02 2.02 0.00 4.35
421 426 1.766143 GACGCATCTAAGGCAAGCCG 61.766 60.000 5.28 0.00 41.95 5.52
422 427 2.537560 CGCATCTAAGGCAAGCCGG 61.538 63.158 5.28 0.00 41.95 6.13
423 428 1.153168 GCATCTAAGGCAAGCCGGA 60.153 57.895 5.05 6.22 41.95 5.14
444 469 2.505819 ACAGCTCCGGATATTTTGGTCT 59.494 45.455 3.57 0.00 0.00 3.85
450 475 2.358898 CCGGATATTTTGGTCTGCCTTG 59.641 50.000 0.00 0.00 35.27 3.61
452 477 2.223572 GGATATTTTGGTCTGCCTTGCG 60.224 50.000 0.00 0.00 35.27 4.85
464 489 1.582610 GCCTTGCGGATCCAAACGAA 61.583 55.000 13.41 0.00 0.00 3.85
465 490 1.094785 CCTTGCGGATCCAAACGAAT 58.905 50.000 13.41 0.00 0.00 3.34
466 491 2.285083 CCTTGCGGATCCAAACGAATA 58.715 47.619 13.41 0.00 0.00 1.75
467 492 2.680841 CCTTGCGGATCCAAACGAATAA 59.319 45.455 13.41 0.00 0.00 1.40
468 493 3.127895 CCTTGCGGATCCAAACGAATAAA 59.872 43.478 13.41 0.00 0.00 1.40
469 494 4.380023 CCTTGCGGATCCAAACGAATAAAA 60.380 41.667 13.41 0.00 0.00 1.52
470 495 4.768130 TGCGGATCCAAACGAATAAAAA 57.232 36.364 13.41 0.00 0.00 1.94
471 496 4.728534 TGCGGATCCAAACGAATAAAAAG 58.271 39.130 13.41 0.00 0.00 2.27
472 497 3.546271 GCGGATCCAAACGAATAAAAAGC 59.454 43.478 13.41 0.00 0.00 3.51
473 498 4.728534 CGGATCCAAACGAATAAAAAGCA 58.271 39.130 13.41 0.00 0.00 3.91
474 499 4.793216 CGGATCCAAACGAATAAAAAGCAG 59.207 41.667 13.41 0.00 0.00 4.24
475 500 5.391523 CGGATCCAAACGAATAAAAAGCAGA 60.392 40.000 13.41 0.00 0.00 4.26
476 501 5.800438 GGATCCAAACGAATAAAAAGCAGAC 59.200 40.000 6.95 0.00 0.00 3.51
477 502 4.778904 TCCAAACGAATAAAAAGCAGACG 58.221 39.130 0.00 0.00 0.00 4.18
478 503 4.512198 TCCAAACGAATAAAAAGCAGACGA 59.488 37.500 0.00 0.00 0.00 4.20
479 504 5.007823 TCCAAACGAATAAAAAGCAGACGAA 59.992 36.000 0.00 0.00 0.00 3.85
480 505 5.683743 CCAAACGAATAAAAAGCAGACGAAA 59.316 36.000 0.00 0.00 0.00 3.46
481 506 6.197468 CCAAACGAATAAAAAGCAGACGAAAA 59.803 34.615 0.00 0.00 0.00 2.29
482 507 6.727569 AACGAATAAAAAGCAGACGAAAAC 57.272 33.333 0.00 0.00 0.00 2.43
483 508 5.209977 ACGAATAAAAAGCAGACGAAAACC 58.790 37.500 0.00 0.00 0.00 3.27
484 509 4.317291 CGAATAAAAAGCAGACGAAAACCG 59.683 41.667 0.00 0.00 45.44 4.44
485 510 1.835121 AAAAAGCAGACGAAAACCGC 58.165 45.000 0.00 0.00 43.32 5.68
486 511 0.316689 AAAAGCAGACGAAAACCGCG 60.317 50.000 0.00 0.00 43.32 6.46
487 512 1.433837 AAAGCAGACGAAAACCGCGT 61.434 50.000 4.92 0.00 45.79 6.01
531 556 3.370840 AGCATAGATGTTGGCTGGAAA 57.629 42.857 0.00 0.00 34.83 3.13
532 557 3.907221 AGCATAGATGTTGGCTGGAAAT 58.093 40.909 0.00 0.00 34.83 2.17
533 558 5.052693 AGCATAGATGTTGGCTGGAAATA 57.947 39.130 0.00 0.00 34.83 1.40
534 559 4.823989 AGCATAGATGTTGGCTGGAAATAC 59.176 41.667 0.00 0.00 34.83 1.89
535 560 4.580167 GCATAGATGTTGGCTGGAAATACA 59.420 41.667 0.00 0.00 0.00 2.29
536 561 5.067674 GCATAGATGTTGGCTGGAAATACAA 59.932 40.000 0.00 0.00 0.00 2.41
537 562 6.732154 CATAGATGTTGGCTGGAAATACAAG 58.268 40.000 0.00 0.00 0.00 3.16
538 563 3.445096 AGATGTTGGCTGGAAATACAAGC 59.555 43.478 0.00 0.00 0.00 4.01
539 564 2.875296 TGTTGGCTGGAAATACAAGCT 58.125 42.857 0.00 0.00 0.00 3.74
540 565 3.230134 TGTTGGCTGGAAATACAAGCTT 58.770 40.909 0.00 0.00 0.00 3.74
541 566 3.005684 TGTTGGCTGGAAATACAAGCTTG 59.994 43.478 24.84 24.84 0.00 4.01
542 567 2.170166 TGGCTGGAAATACAAGCTTGG 58.830 47.619 29.18 12.28 0.00 3.61
547 572 6.003950 GGCTGGAAATACAAGCTTGGATATA 58.996 40.000 29.18 13.55 29.71 0.86
627 663 1.608055 TGATTTGGCATCCCGCATAG 58.392 50.000 0.00 0.00 45.17 2.23
703 739 1.831286 AGGTGTCGTCCTCAACCGT 60.831 57.895 0.00 0.00 31.32 4.83
704 740 0.538057 AGGTGTCGTCCTCAACCGTA 60.538 55.000 0.00 0.00 31.32 4.02
717 753 3.167485 TCAACCGTAACCCTGTACATCT 58.833 45.455 0.00 0.00 0.00 2.90
727 767 1.350193 CTGTACATCTGTCGGCACAC 58.650 55.000 0.00 0.00 0.00 3.82
766 806 2.032030 CGCCGACTTGCCTTATTATTGG 60.032 50.000 0.00 0.00 0.00 3.16
836 876 2.743718 CCTGCCTCCACGTGAAGT 59.256 61.111 19.30 0.00 0.00 3.01
867 907 0.598158 CGCATGCATTATTGGCACCC 60.598 55.000 19.57 0.00 45.23 4.61
871 911 2.816777 TGCATTATTGGCACCCACTA 57.183 45.000 0.00 0.00 36.11 2.74
888 928 3.314541 ACTATTCAGTGGGACGACAAC 57.685 47.619 0.00 0.00 32.25 3.32
898 938 1.493772 GGACGACAACAACGATCACA 58.506 50.000 0.00 0.00 34.70 3.58
899 939 1.862201 GGACGACAACAACGATCACAA 59.138 47.619 0.00 0.00 34.70 3.33
941 981 7.154656 CGCAGCACATATACATATACCCATAT 58.845 38.462 0.00 0.00 0.00 1.78
964 1004 2.092321 GGAGTACCACTCTCTCTAGCCA 60.092 54.545 6.30 0.00 44.46 4.75
986 1026 0.875059 CAGGGCAAAGAAAGACCGAC 59.125 55.000 0.00 0.00 39.93 4.79
990 1030 3.054361 AGGGCAAAGAAAGACCGACATAT 60.054 43.478 0.00 0.00 39.93 1.78
1122 1165 3.706373 CTGGTGTACCTGCCGGCT 61.706 66.667 29.70 10.43 36.82 5.52
1253 1296 2.835431 CGACCTCATCGCCCTCCT 60.835 66.667 0.00 0.00 45.52 3.69
1264 1307 1.295423 GCCCTCCTGCGTGACTTTA 59.705 57.895 0.00 0.00 0.00 1.85
1325 1368 0.834612 AACCGACACCACTTCAAGGA 59.165 50.000 0.00 0.00 0.00 3.36
1352 1395 3.246301 ACCTCTAGGCATGCATGATACT 58.754 45.455 30.64 23.54 39.32 2.12
1353 1396 3.649981 ACCTCTAGGCATGCATGATACTT 59.350 43.478 30.64 11.44 39.32 2.24
1354 1397 4.252073 CCTCTAGGCATGCATGATACTTC 58.748 47.826 30.64 10.90 0.00 3.01
1355 1398 4.252073 CTCTAGGCATGCATGATACTTCC 58.748 47.826 30.64 19.32 0.00 3.46
1356 1399 3.906218 TCTAGGCATGCATGATACTTCCT 59.094 43.478 30.64 24.73 0.00 3.36
1357 1400 3.137446 AGGCATGCATGATACTTCCTC 57.863 47.619 30.64 8.66 0.00 3.71
1358 1401 2.157738 GGCATGCATGATACTTCCTCC 58.842 52.381 30.64 14.06 0.00 4.30
1359 1402 1.802960 GCATGCATGATACTTCCTCCG 59.197 52.381 30.64 0.00 0.00 4.63
1360 1403 2.808202 GCATGCATGATACTTCCTCCGT 60.808 50.000 30.64 0.00 0.00 4.69
1361 1404 2.890808 TGCATGATACTTCCTCCGTC 57.109 50.000 0.00 0.00 0.00 4.79
1362 1405 1.412710 TGCATGATACTTCCTCCGTCC 59.587 52.381 0.00 0.00 0.00 4.79
1363 1406 1.603172 GCATGATACTTCCTCCGTCCG 60.603 57.143 0.00 0.00 0.00 4.79
1364 1407 1.954382 CATGATACTTCCTCCGTCCGA 59.046 52.381 0.00 0.00 0.00 4.55
1365 1408 2.133281 TGATACTTCCTCCGTCCGAA 57.867 50.000 0.00 0.00 0.00 4.30
1366 1409 2.449464 TGATACTTCCTCCGTCCGAAA 58.551 47.619 0.00 0.00 0.00 3.46
1367 1410 2.827322 TGATACTTCCTCCGTCCGAAAA 59.173 45.455 0.00 0.00 0.00 2.29
1368 1411 3.449737 TGATACTTCCTCCGTCCGAAAAT 59.550 43.478 0.00 0.00 0.00 1.82
1369 1412 4.646040 TGATACTTCCTCCGTCCGAAAATA 59.354 41.667 0.00 0.00 0.00 1.40
1370 1413 3.242549 ACTTCCTCCGTCCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
1371 1414 2.830321 ACTTCCTCCGTCCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
1372 1415 3.260128 ACTTCCTCCGTCCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
1373 1416 3.241067 TCCTCCGTCCGAAAATACTTG 57.759 47.619 0.00 0.00 0.00 3.16
1374 1417 2.564062 TCCTCCGTCCGAAAATACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
1375 1418 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1376 1419 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1377 1420 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1378 1421 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1379 1422 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1380 1423 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1381 1424 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1382 1425 6.015504 CGTCCGAAAATACTTGTCATCAAAG 58.984 40.000 0.00 0.00 32.87 2.77
1383 1426 6.347402 CGTCCGAAAATACTTGTCATCAAAGT 60.347 38.462 0.00 0.00 32.87 2.66
1384 1427 6.797033 GTCCGAAAATACTTGTCATCAAAGTG 59.203 38.462 0.00 0.00 32.87 3.16
1385 1428 6.072728 TCCGAAAATACTTGTCATCAAAGTGG 60.073 38.462 0.00 0.00 32.87 4.00
1386 1429 6.072728 CCGAAAATACTTGTCATCAAAGTGGA 60.073 38.462 0.00 0.00 32.87 4.02
1387 1430 7.017645 CGAAAATACTTGTCATCAAAGTGGAG 58.982 38.462 0.00 0.00 32.87 3.86
1388 1431 7.095229 CGAAAATACTTGTCATCAAAGTGGAGA 60.095 37.037 0.00 0.00 32.87 3.71
1389 1432 8.463930 AAAATACTTGTCATCAAAGTGGAGAA 57.536 30.769 0.00 0.00 32.87 2.87
1390 1433 8.463930 AAATACTTGTCATCAAAGTGGAGAAA 57.536 30.769 0.00 0.00 32.87 2.52
1391 1434 8.463930 AATACTTGTCATCAAAGTGGAGAAAA 57.536 30.769 0.00 0.00 32.87 2.29
1392 1435 6.966534 ACTTGTCATCAAAGTGGAGAAAAT 57.033 33.333 0.00 0.00 32.87 1.82
1393 1436 6.742109 ACTTGTCATCAAAGTGGAGAAAATG 58.258 36.000 0.00 0.00 32.87 2.32
1394 1437 6.547141 ACTTGTCATCAAAGTGGAGAAAATGA 59.453 34.615 0.00 0.00 32.87 2.57
1395 1438 6.564709 TGTCATCAAAGTGGAGAAAATGAG 57.435 37.500 0.00 0.00 0.00 2.90
1396 1439 6.064060 TGTCATCAAAGTGGAGAAAATGAGT 58.936 36.000 0.00 0.00 0.00 3.41
1397 1440 6.547141 TGTCATCAAAGTGGAGAAAATGAGTT 59.453 34.615 0.00 0.00 0.00 3.01
1398 1441 6.860023 GTCATCAAAGTGGAGAAAATGAGTTG 59.140 38.462 0.00 0.00 0.00 3.16
1399 1442 6.547141 TCATCAAAGTGGAGAAAATGAGTTGT 59.453 34.615 0.00 0.00 0.00 3.32
1400 1443 7.719193 TCATCAAAGTGGAGAAAATGAGTTGTA 59.281 33.333 0.00 0.00 0.00 2.41
1401 1444 8.517878 CATCAAAGTGGAGAAAATGAGTTGTAT 58.482 33.333 0.00 0.00 0.00 2.29
1402 1445 8.099364 TCAAAGTGGAGAAAATGAGTTGTATC 57.901 34.615 0.00 0.00 0.00 2.24
1403 1446 7.939039 TCAAAGTGGAGAAAATGAGTTGTATCT 59.061 33.333 0.00 0.00 0.00 1.98
1404 1447 7.678947 AAGTGGAGAAAATGAGTTGTATCTG 57.321 36.000 0.00 0.00 0.00 2.90
1405 1448 7.009179 AGTGGAGAAAATGAGTTGTATCTGA 57.991 36.000 0.00 0.00 0.00 3.27
1406 1449 7.102346 AGTGGAGAAAATGAGTTGTATCTGAG 58.898 38.462 0.00 0.00 0.00 3.35
1407 1450 7.038729 AGTGGAGAAAATGAGTTGTATCTGAGA 60.039 37.037 0.00 0.00 0.00 3.27
1408 1451 7.064016 GTGGAGAAAATGAGTTGTATCTGAGAC 59.936 40.741 0.00 0.00 0.00 3.36
1409 1452 7.038729 TGGAGAAAATGAGTTGTATCTGAGACT 60.039 37.037 3.90 0.00 0.00 3.24
1410 1453 8.470805 GGAGAAAATGAGTTGTATCTGAGACTA 58.529 37.037 3.90 0.00 0.00 2.59
1411 1454 9.862371 GAGAAAATGAGTTGTATCTGAGACTAA 57.138 33.333 3.90 0.00 0.00 2.24
1417 1460 9.737427 ATGAGTTGTATCTGAGACTAAAATACG 57.263 33.333 3.90 0.00 0.00 3.06
1418 1461 8.737175 TGAGTTGTATCTGAGACTAAAATACGT 58.263 33.333 3.90 0.00 0.00 3.57
1419 1462 9.570488 GAGTTGTATCTGAGACTAAAATACGTT 57.430 33.333 3.90 0.00 0.00 3.99
1420 1463 9.355215 AGTTGTATCTGAGACTAAAATACGTTG 57.645 33.333 3.90 0.00 0.00 4.10
1421 1464 9.350357 GTTGTATCTGAGACTAAAATACGTTGA 57.650 33.333 3.90 0.00 0.00 3.18
1422 1465 9.569167 TTGTATCTGAGACTAAAATACGTTGAG 57.431 33.333 3.90 0.00 0.00 3.02
1423 1466 8.953313 TGTATCTGAGACTAAAATACGTTGAGA 58.047 33.333 3.90 0.00 0.00 3.27
1424 1467 9.953697 GTATCTGAGACTAAAATACGTTGAGAT 57.046 33.333 0.00 0.00 0.00 2.75
1426 1469 9.953697 ATCTGAGACTAAAATACGTTGAGATAC 57.046 33.333 0.00 0.00 0.00 2.24
1427 1470 8.953313 TCTGAGACTAAAATACGTTGAGATACA 58.047 33.333 0.00 0.00 0.00 2.29
1428 1471 9.737427 CTGAGACTAAAATACGTTGAGATACAT 57.263 33.333 0.00 0.00 0.00 2.29
1429 1472 9.731819 TGAGACTAAAATACGTTGAGATACATC 57.268 33.333 0.00 0.00 0.00 3.06
1430 1473 9.182933 GAGACTAAAATACGTTGAGATACATCC 57.817 37.037 0.00 0.00 0.00 3.51
1431 1474 8.142551 AGACTAAAATACGTTGAGATACATCCC 58.857 37.037 0.00 0.00 0.00 3.85
1432 1475 8.019656 ACTAAAATACGTTGAGATACATCCCT 57.980 34.615 0.00 0.00 0.00 4.20
1433 1476 8.483758 ACTAAAATACGTTGAGATACATCCCTT 58.516 33.333 0.00 0.00 0.00 3.95
1434 1477 9.326413 CTAAAATACGTTGAGATACATCCCTTT 57.674 33.333 0.00 0.00 0.00 3.11
1435 1478 8.575649 AAAATACGTTGAGATACATCCCTTTT 57.424 30.769 0.00 0.00 0.00 2.27
1436 1479 8.575649 AAATACGTTGAGATACATCCCTTTTT 57.424 30.769 0.00 0.00 0.00 1.94
1437 1480 9.675464 AAATACGTTGAGATACATCCCTTTTTA 57.325 29.630 0.00 0.00 0.00 1.52
1438 1481 9.847224 AATACGTTGAGATACATCCCTTTTTAT 57.153 29.630 0.00 0.00 0.00 1.40
1439 1482 7.787725 ACGTTGAGATACATCCCTTTTTATC 57.212 36.000 0.00 0.00 0.00 1.75
1440 1483 6.766467 ACGTTGAGATACATCCCTTTTTATCC 59.234 38.462 0.00 0.00 0.00 2.59
1441 1484 6.765989 CGTTGAGATACATCCCTTTTTATCCA 59.234 38.462 0.00 0.00 0.00 3.41
1442 1485 7.445402 CGTTGAGATACATCCCTTTTTATCCAT 59.555 37.037 0.00 0.00 0.00 3.41
1443 1486 9.136323 GTTGAGATACATCCCTTTTTATCCATT 57.864 33.333 0.00 0.00 0.00 3.16
1444 1487 9.713684 TTGAGATACATCCCTTTTTATCCATTT 57.286 29.630 0.00 0.00 0.00 2.32
1445 1488 9.713684 TGAGATACATCCCTTTTTATCCATTTT 57.286 29.630 0.00 0.00 0.00 1.82
1446 1489 9.971922 GAGATACATCCCTTTTTATCCATTTTG 57.028 33.333 0.00 0.00 0.00 2.44
1447 1490 9.713684 AGATACATCCCTTTTTATCCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
1450 1493 8.378115 ACATCCCTTTTTATCCATTTTGATCA 57.622 30.769 0.00 0.00 0.00 2.92
1451 1494 8.995577 ACATCCCTTTTTATCCATTTTGATCAT 58.004 29.630 0.00 0.00 0.00 2.45
1463 1506 8.165239 TCCATTTTGATCATAAGTATTTCCGG 57.835 34.615 0.00 0.00 0.00 5.14
1464 1507 7.230510 TCCATTTTGATCATAAGTATTTCCGGG 59.769 37.037 0.00 0.00 0.00 5.73
1465 1508 6.385649 TTTTGATCATAAGTATTTCCGGGC 57.614 37.500 0.00 0.00 0.00 6.13
1466 1509 4.015872 TGATCATAAGTATTTCCGGGCC 57.984 45.455 0.00 0.00 0.00 5.80
1467 1510 2.536761 TCATAAGTATTTCCGGGCCG 57.463 50.000 21.46 21.46 0.00 6.13
1468 1511 2.040939 TCATAAGTATTTCCGGGCCGA 58.959 47.619 30.79 8.18 0.00 5.54
1469 1512 2.036733 TCATAAGTATTTCCGGGCCGAG 59.963 50.000 30.79 17.99 0.00 4.63
1470 1513 0.754472 TAAGTATTTCCGGGCCGAGG 59.246 55.000 30.79 12.35 0.00 4.63
1471 1514 1.979619 AAGTATTTCCGGGCCGAGGG 61.980 60.000 30.79 11.48 0.00 4.30
1472 1515 2.041715 TATTTCCGGGCCGAGGGA 60.042 61.111 30.79 14.08 0.00 4.20
1473 1516 2.138179 TATTTCCGGGCCGAGGGAG 61.138 63.158 30.79 10.59 33.01 4.30
1474 1517 2.884179 TATTTCCGGGCCGAGGGAGT 62.884 60.000 30.79 5.51 33.01 3.85
1488 1531 4.500205 CCGAGGGAGTGCATTATTTACGTA 60.500 45.833 0.00 0.00 0.00 3.57
1489 1532 4.443394 CGAGGGAGTGCATTATTTACGTAC 59.557 45.833 0.00 0.00 0.00 3.67
1490 1533 4.700700 AGGGAGTGCATTATTTACGTACC 58.299 43.478 0.00 0.00 0.00 3.34
1491 1534 3.811497 GGGAGTGCATTATTTACGTACCC 59.189 47.826 0.00 0.00 0.00 3.69
1492 1535 3.811497 GGAGTGCATTATTTACGTACCCC 59.189 47.826 0.00 0.00 0.00 4.95
1493 1536 3.811497 GAGTGCATTATTTACGTACCCCC 59.189 47.826 0.00 0.00 0.00 5.40
1494 1537 3.457012 AGTGCATTATTTACGTACCCCCT 59.543 43.478 0.00 0.00 0.00 4.79
1495 1538 3.811497 GTGCATTATTTACGTACCCCCTC 59.189 47.826 0.00 0.00 0.00 4.30
1496 1539 3.181452 TGCATTATTTACGTACCCCCTCC 60.181 47.826 0.00 0.00 0.00 4.30
1497 1540 3.656559 CATTATTTACGTACCCCCTCCG 58.343 50.000 0.00 0.00 0.00 4.63
1498 1541 2.452600 TATTTACGTACCCCCTCCGT 57.547 50.000 0.00 0.00 38.53 4.69
1499 1542 1.114627 ATTTACGTACCCCCTCCGTC 58.885 55.000 0.00 0.00 36.12 4.79
1500 1543 0.039618 TTTACGTACCCCCTCCGTCT 59.960 55.000 0.00 0.00 36.12 4.18
1501 1544 0.394352 TTACGTACCCCCTCCGTCTC 60.394 60.000 0.00 0.00 36.12 3.36
1502 1545 1.561769 TACGTACCCCCTCCGTCTCA 61.562 60.000 0.00 0.00 36.12 3.27
1503 1546 1.679977 CGTACCCCCTCCGTCTCAA 60.680 63.158 0.00 0.00 0.00 3.02
1504 1547 1.252904 CGTACCCCCTCCGTCTCAAA 61.253 60.000 0.00 0.00 0.00 2.69
1505 1548 0.978907 GTACCCCCTCCGTCTCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1506 1549 1.558294 GTACCCCCTCCGTCTCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1507 1550 1.961133 ACCCCCTCCGTCTCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1508 1551 2.271777 ACCCCCTCCGTCTCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1509 1552 2.238898 ACCCCCTCCGTCTCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1510 1553 2.238898 CCCCCTCCGTCTCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1511 1554 3.270877 CCCCTCCGTCTCAAAATAAGTG 58.729 50.000 0.00 0.00 0.00 3.16
1512 1555 3.307480 CCCCTCCGTCTCAAAATAAGTGT 60.307 47.826 0.00 0.00 0.00 3.55
1513 1556 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
1514 1557 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
1515 1558 4.865365 CCTCCGTCTCAAAATAAGTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
1516 1559 5.462530 TCCGTCTCAAAATAAGTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
1517 1560 5.849510 TCCGTCTCAAAATAAGTGTCTCAA 58.150 37.500 0.00 0.00 0.00 3.02
1518 1561 6.464222 TCCGTCTCAAAATAAGTGTCTCAAT 58.536 36.000 0.00 0.00 0.00 2.57
1519 1562 6.934645 TCCGTCTCAAAATAAGTGTCTCAATT 59.065 34.615 0.00 0.00 0.00 2.32
1520 1563 7.444183 TCCGTCTCAAAATAAGTGTCTCAATTT 59.556 33.333 0.00 0.00 0.00 1.82
1521 1564 7.535258 CCGTCTCAAAATAAGTGTCTCAATTTG 59.465 37.037 0.00 0.00 0.00 2.32
1522 1565 8.070171 CGTCTCAAAATAAGTGTCTCAATTTGT 58.930 33.333 0.00 0.00 0.00 2.83
1531 1574 7.964604 AAGTGTCTCAATTTGTACTAACTCC 57.035 36.000 0.00 0.00 0.00 3.85
1532 1575 7.062749 AGTGTCTCAATTTGTACTAACTCCA 57.937 36.000 0.00 0.00 0.00 3.86
1533 1576 7.155328 AGTGTCTCAATTTGTACTAACTCCAG 58.845 38.462 0.00 0.00 0.00 3.86
1534 1577 6.929606 GTGTCTCAATTTGTACTAACTCCAGT 59.070 38.462 0.00 0.00 0.00 4.00
1535 1578 8.086522 GTGTCTCAATTTGTACTAACTCCAGTA 58.913 37.037 0.00 0.00 0.00 2.74
1536 1579 8.812972 TGTCTCAATTTGTACTAACTCCAGTAT 58.187 33.333 0.00 0.00 33.71 2.12
1561 1604 9.686683 ATAAAATTGTATTAAGCCTCAGACACT 57.313 29.630 0.00 0.00 0.00 3.55
1562 1605 8.409358 AAAATTGTATTAAGCCTCAGACACTT 57.591 30.769 0.00 0.00 0.00 3.16
1563 1606 9.515226 AAAATTGTATTAAGCCTCAGACACTTA 57.485 29.630 0.00 0.00 0.00 2.24
1564 1607 9.686683 AAATTGTATTAAGCCTCAGACACTTAT 57.313 29.630 0.00 0.00 0.00 1.73
1565 1608 9.686683 AATTGTATTAAGCCTCAGACACTTATT 57.313 29.630 0.00 0.00 0.00 1.40
1566 1609 9.686683 ATTGTATTAAGCCTCAGACACTTATTT 57.313 29.630 0.00 0.00 0.00 1.40
1567 1610 9.515226 TTGTATTAAGCCTCAGACACTTATTTT 57.485 29.630 0.00 0.00 0.00 1.82
1568 1611 8.946085 TGTATTAAGCCTCAGACACTTATTTTG 58.054 33.333 0.00 0.00 0.00 2.44
1569 1612 6.817765 TTAAGCCTCAGACACTTATTTTGG 57.182 37.500 0.00 0.00 0.00 3.28
1570 1613 3.690460 AGCCTCAGACACTTATTTTGGG 58.310 45.455 0.00 0.00 0.00 4.12
1571 1614 3.330701 AGCCTCAGACACTTATTTTGGGA 59.669 43.478 0.00 0.00 0.00 4.37
1572 1615 3.440522 GCCTCAGACACTTATTTTGGGAC 59.559 47.826 0.00 0.00 0.00 4.46
1573 1616 3.684788 CCTCAGACACTTATTTTGGGACG 59.315 47.826 0.00 0.00 0.00 4.79
1574 1617 3.670625 TCAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
1575 1618 3.325425 TCAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
1576 1619 3.684788 CAGACACTTATTTTGGGACGGAG 59.315 47.826 0.00 0.00 0.00 4.63
1577 1620 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1578 1621 2.374170 ACACTTATTTTGGGACGGAGGT 59.626 45.455 0.00 0.00 0.00 3.85
1579 1622 3.583966 ACACTTATTTTGGGACGGAGGTA 59.416 43.478 0.00 0.00 0.00 3.08
1594 1637 3.382865 CGGAGGTACTACTTACTTTCCCC 59.617 52.174 0.00 0.00 41.55 4.81
1632 1675 1.606189 TGTTCTGCAAATAAGCGCACA 59.394 42.857 11.47 0.00 37.31 4.57
1724 1767 5.550232 TGATTGAATCTCGGATGTGTTTG 57.450 39.130 6.73 0.00 0.00 2.93
1755 1798 2.031157 GCTTGCATGGTCGTACTTGTTT 60.031 45.455 1.34 0.00 0.00 2.83
1779 1822 7.979444 TGTTTACCAAAAACCACAAATTTCA 57.021 28.000 0.00 0.00 0.00 2.69
1792 1835 8.200364 ACCACAAATTTCAAAATTTCTGACTG 57.800 30.769 14.13 6.02 44.38 3.51
1802 1845 7.884257 TCAAAATTTCTGACTGTGCATGAATA 58.116 30.769 0.00 0.00 0.00 1.75
1882 1925 5.245301 TCTCCTCTTTTCACGTGGAAGATAA 59.755 40.000 25.12 18.13 36.72 1.75
1883 1926 5.479306 TCCTCTTTTCACGTGGAAGATAAG 58.521 41.667 25.12 14.92 36.72 1.73
1884 1927 5.245301 TCCTCTTTTCACGTGGAAGATAAGA 59.755 40.000 25.12 17.61 36.72 2.10
1885 1928 5.932303 CCTCTTTTCACGTGGAAGATAAGAA 59.068 40.000 25.12 6.19 36.72 2.52
1886 1929 6.091441 CCTCTTTTCACGTGGAAGATAAGAAG 59.909 42.308 25.12 13.45 36.72 2.85
1887 1930 6.755206 TCTTTTCACGTGGAAGATAAGAAGA 58.245 36.000 22.78 13.62 36.72 2.87
1888 1931 7.386851 TCTTTTCACGTGGAAGATAAGAAGAT 58.613 34.615 22.78 0.00 36.72 2.40
1889 1932 8.528643 TCTTTTCACGTGGAAGATAAGAAGATA 58.471 33.333 22.78 1.25 36.72 1.98
1890 1933 9.151471 CTTTTCACGTGGAAGATAAGAAGATAA 57.849 33.333 17.00 0.00 36.72 1.75
1891 1934 9.496873 TTTTCACGTGGAAGATAAGAAGATAAA 57.503 29.630 17.00 0.00 36.72 1.40
1892 1935 9.496873 TTTCACGTGGAAGATAAGAAGATAAAA 57.503 29.630 17.00 0.00 36.72 1.52
1893 1936 8.703604 TCACGTGGAAGATAAGAAGATAAAAG 57.296 34.615 17.00 0.00 0.00 2.27
1894 1937 8.311836 TCACGTGGAAGATAAGAAGATAAAAGT 58.688 33.333 17.00 0.00 0.00 2.66
1895 1938 8.936864 CACGTGGAAGATAAGAAGATAAAAGTT 58.063 33.333 7.95 0.00 0.00 2.66
1998 2041 4.905429 AGGAACCATGTTAAAATTTGCCC 58.095 39.130 0.00 0.00 0.00 5.36
2001 2044 4.014569 ACCATGTTAAAATTTGCCCCAC 57.985 40.909 0.00 0.00 0.00 4.61
2004 2047 4.395542 CCATGTTAAAATTTGCCCCACATG 59.604 41.667 15.12 15.12 39.72 3.21
2008 2051 3.853355 AAAATTTGCCCCACATGTTGA 57.147 38.095 0.00 0.00 0.00 3.18
2010 2053 3.337694 AATTTGCCCCACATGTTGATG 57.662 42.857 0.00 0.00 35.49 3.07
2011 2054 0.321021 TTTGCCCCACATGTTGATGC 59.679 50.000 0.00 0.00 32.14 3.91
2012 2055 0.830866 TTGCCCCACATGTTGATGCA 60.831 50.000 0.00 2.71 32.14 3.96
2013 2056 0.615261 TGCCCCACATGTTGATGCAT 60.615 50.000 0.00 0.00 32.14 3.96
2014 2057 0.103572 GCCCCACATGTTGATGCATC 59.896 55.000 20.14 20.14 32.14 3.91
2015 2058 0.748450 CCCCACATGTTGATGCATCC 59.252 55.000 23.67 9.97 32.14 3.51
2041 2089 3.672767 AAAATGGCTGAAAAGGAGCAG 57.327 42.857 0.00 0.00 38.27 4.24
2047 2095 0.679321 CTGAAAAGGAGCAGGGCCTC 60.679 60.000 0.95 0.00 33.76 4.70
2087 2135 3.372025 GGGAATGTTTGGTAGCTCTCCAT 60.372 47.826 10.69 0.00 34.75 3.41
2112 2160 0.741915 GACTCCTCCAACTCTAGGCG 59.258 60.000 0.00 0.00 32.55 5.52
2127 2175 3.050275 GCGTGGAGCTGGGTTGAC 61.050 66.667 0.00 0.00 44.04 3.18
2140 2188 2.764439 GGTTGACCAACTCTACCCTC 57.236 55.000 12.02 0.00 38.49 4.30
2153 2201 2.776370 TACCCTCGGAGCTCCACGTT 62.776 60.000 31.67 13.98 35.14 3.99
2161 2209 1.066430 GGAGCTCCACGTTAATCCACA 60.066 52.381 28.43 0.00 35.64 4.17
2227 2275 3.553828 TTGATTTACCTTAGCCCTCCG 57.446 47.619 0.00 0.00 0.00 4.63
2233 2281 4.677673 TTACCTTAGCCCTCCGATTTAC 57.322 45.455 0.00 0.00 0.00 2.01
2244 2292 3.319972 CCTCCGATTTACGTTATCCCTGA 59.680 47.826 0.00 0.00 40.78 3.86
2256 2304 4.542697 GTTATCCCTGAGGCCCAAAAATA 58.457 43.478 0.00 0.00 0.00 1.40
2262 2310 4.477249 CCTGAGGCCCAAAAATATCTGAT 58.523 43.478 0.00 0.00 0.00 2.90
2266 2314 3.893813 AGGCCCAAAAATATCTGATCTGC 59.106 43.478 0.00 0.00 0.00 4.26
2269 2317 4.790766 GCCCAAAAATATCTGATCTGCACG 60.791 45.833 0.00 0.00 0.00 5.34
2272 2320 6.293081 CCCAAAAATATCTGATCTGCACGTAG 60.293 42.308 0.00 0.00 0.00 3.51
2275 2323 8.554528 CAAAAATATCTGATCTGCACGTAGATT 58.445 33.333 2.45 0.00 37.53 2.40
2285 2333 5.730550 TCTGCACGTAGATTTGACCTAATT 58.269 37.500 0.00 0.00 0.00 1.40
2286 2334 5.580691 TCTGCACGTAGATTTGACCTAATTG 59.419 40.000 0.00 0.00 0.00 2.32
2300 2348 6.436027 TGACCTAATTGGCCCATAATTAACA 58.564 36.000 0.00 2.89 40.22 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.223618 ACAATACGTTGGTTGGCAACAC 60.224 45.455 29.63 19.44 43.15 3.32
1 2 2.025155 ACAATACGTTGGTTGGCAACA 58.975 42.857 29.63 14.44 42.22 3.33
2 3 2.389998 CACAATACGTTGGTTGGCAAC 58.610 47.619 21.92 21.92 39.70 4.17
3 4 1.269309 GCACAATACGTTGGTTGGCAA 60.269 47.619 0.00 0.00 39.70 4.52
4 5 0.312416 GCACAATACGTTGGTTGGCA 59.688 50.000 0.00 0.00 39.70 4.92
5 6 0.388006 GGCACAATACGTTGGTTGGC 60.388 55.000 0.00 3.55 39.70 4.52
6 7 0.242555 GGGCACAATACGTTGGTTGG 59.757 55.000 0.00 0.00 39.70 3.77
7 8 0.109964 CGGGCACAATACGTTGGTTG 60.110 55.000 0.00 0.00 39.70 3.77
8 9 1.858372 GCGGGCACAATACGTTGGTT 61.858 55.000 0.00 0.00 39.70 3.67
9 10 2.329614 GCGGGCACAATACGTTGGT 61.330 57.895 0.00 0.00 39.70 3.67
10 11 2.483288 GCGGGCACAATACGTTGG 59.517 61.111 0.00 0.00 39.70 3.77
11 12 2.483288 GGCGGGCACAATACGTTG 59.517 61.111 0.00 0.00 41.20 4.10
12 13 2.748647 GGGCGGGCACAATACGTT 60.749 61.111 3.27 0.00 0.00 3.99
13 14 2.830186 AATGGGCGGGCACAATACGT 62.830 55.000 0.00 0.00 30.82 3.57
14 15 1.662438 AAATGGGCGGGCACAATACG 61.662 55.000 0.00 0.00 30.82 3.06
15 16 0.179113 CAAATGGGCGGGCACAATAC 60.179 55.000 0.00 0.00 30.82 1.89
16 17 0.323816 TCAAATGGGCGGGCACAATA 60.324 50.000 0.00 0.00 30.82 1.90
17 18 1.608918 TCAAATGGGCGGGCACAAT 60.609 52.632 0.00 0.00 30.82 2.71
18 19 2.203552 TCAAATGGGCGGGCACAA 60.204 55.556 0.00 0.00 30.82 3.33
19 20 2.988684 GTCAAATGGGCGGGCACA 60.989 61.111 0.00 0.00 0.00 4.57
20 21 2.676471 AGTCAAATGGGCGGGCAC 60.676 61.111 3.27 0.00 0.00 5.01
21 22 2.676121 CAGTCAAATGGGCGGGCA 60.676 61.111 3.27 0.00 0.00 5.36
22 23 3.451894 CCAGTCAAATGGGCGGGC 61.452 66.667 0.00 0.00 36.64 6.13
28 29 1.411246 CCATCATGCCCAGTCAAATGG 59.589 52.381 0.00 0.00 40.29 3.16
29 30 2.361119 CTCCATCATGCCCAGTCAAATG 59.639 50.000 0.00 0.00 0.00 2.32
30 31 2.662866 CTCCATCATGCCCAGTCAAAT 58.337 47.619 0.00 0.00 0.00 2.32
31 32 1.341285 CCTCCATCATGCCCAGTCAAA 60.341 52.381 0.00 0.00 0.00 2.69
32 33 0.256752 CCTCCATCATGCCCAGTCAA 59.743 55.000 0.00 0.00 0.00 3.18
33 34 0.621280 TCCTCCATCATGCCCAGTCA 60.621 55.000 0.00 0.00 0.00 3.41
34 35 0.108207 CTCCTCCATCATGCCCAGTC 59.892 60.000 0.00 0.00 0.00 3.51
35 36 1.351080 CCTCCTCCATCATGCCCAGT 61.351 60.000 0.00 0.00 0.00 4.00
36 37 1.058428 TCCTCCTCCATCATGCCCAG 61.058 60.000 0.00 0.00 0.00 4.45
37 38 1.004626 TCCTCCTCCATCATGCCCA 59.995 57.895 0.00 0.00 0.00 5.36
38 39 1.759881 CTCCTCCTCCATCATGCCC 59.240 63.158 0.00 0.00 0.00 5.36
39 40 1.072852 GCTCCTCCTCCATCATGCC 59.927 63.158 0.00 0.00 0.00 4.40
40 41 1.301558 CGCTCCTCCTCCATCATGC 60.302 63.158 0.00 0.00 0.00 4.06
41 42 1.370437 CCGCTCCTCCTCCATCATG 59.630 63.158 0.00 0.00 0.00 3.07
42 43 2.515071 GCCGCTCCTCCTCCATCAT 61.515 63.158 0.00 0.00 0.00 2.45
43 44 3.157252 GCCGCTCCTCCTCCATCA 61.157 66.667 0.00 0.00 0.00 3.07
44 45 2.447586 GATGCCGCTCCTCCTCCATC 62.448 65.000 0.00 0.00 0.00 3.51
45 46 2.447379 ATGCCGCTCCTCCTCCAT 60.447 61.111 0.00 0.00 0.00 3.41
46 47 3.157252 GATGCCGCTCCTCCTCCA 61.157 66.667 0.00 0.00 0.00 3.86
47 48 3.934962 GGATGCCGCTCCTCCTCC 61.935 72.222 0.00 0.00 32.18 4.30
48 49 3.934962 GGGATGCCGCTCCTCCTC 61.935 72.222 8.27 0.00 35.50 3.71
56 57 3.224324 TCGTAGAGGGGATGCCGC 61.224 66.667 0.00 0.00 36.67 6.53
67 68 2.124403 GACCCTCCCGCTCGTAGA 60.124 66.667 0.00 0.00 0.00 2.59
68 69 3.584052 CGACCCTCCCGCTCGTAG 61.584 72.222 0.00 0.00 0.00 3.51
69 70 4.415150 ACGACCCTCCCGCTCGTA 62.415 66.667 0.00 0.00 38.83 3.43
75 76 4.742201 CACTGCACGACCCTCCCG 62.742 72.222 0.00 0.00 0.00 5.14
76 77 4.394712 CCACTGCACGACCCTCCC 62.395 72.222 0.00 0.00 0.00 4.30
111 112 4.219846 CTGCATGACGCGCTCTGC 62.220 66.667 17.35 17.35 46.97 4.26
112 113 3.561213 CCTGCATGACGCGCTCTG 61.561 66.667 5.73 1.34 46.97 3.35
113 114 4.074526 ACCTGCATGACGCGCTCT 62.075 61.111 5.73 0.00 46.97 4.09
114 115 3.857854 CACCTGCATGACGCGCTC 61.858 66.667 5.73 3.58 46.97 5.03
115 116 4.377708 TCACCTGCATGACGCGCT 62.378 61.111 5.73 0.00 46.97 5.92
116 117 3.857854 CTCACCTGCATGACGCGC 61.858 66.667 5.73 0.00 46.97 6.86
117 118 2.433145 ACTCACCTGCATGACGCG 60.433 61.111 3.53 3.53 46.97 6.01
118 119 0.389817 TACACTCACCTGCATGACGC 60.390 55.000 0.00 0.00 42.89 5.19
119 120 1.633561 CTACACTCACCTGCATGACG 58.366 55.000 0.00 0.00 0.00 4.35
120 121 1.363744 GCTACACTCACCTGCATGAC 58.636 55.000 0.00 0.00 0.00 3.06
121 122 0.250234 GGCTACACTCACCTGCATGA 59.750 55.000 0.00 0.00 0.00 3.07
122 123 0.251354 AGGCTACACTCACCTGCATG 59.749 55.000 0.00 0.00 30.82 4.06
123 124 0.539051 GAGGCTACACTCACCTGCAT 59.461 55.000 0.00 0.00 37.44 3.96
124 125 1.877576 CGAGGCTACACTCACCTGCA 61.878 60.000 0.00 0.00 37.34 4.41
125 126 1.153745 CGAGGCTACACTCACCTGC 60.154 63.158 0.00 0.00 37.34 4.85
126 127 0.965866 TCCGAGGCTACACTCACCTG 60.966 60.000 0.00 0.00 37.34 4.00
127 128 0.033011 ATCCGAGGCTACACTCACCT 60.033 55.000 0.00 0.00 37.34 4.00
128 129 0.103208 CATCCGAGGCTACACTCACC 59.897 60.000 0.00 0.00 37.34 4.02
129 130 0.528684 GCATCCGAGGCTACACTCAC 60.529 60.000 0.00 0.00 37.34 3.51
130 131 1.816537 GCATCCGAGGCTACACTCA 59.183 57.895 0.00 0.00 37.34 3.41
131 132 1.299468 CGCATCCGAGGCTACACTC 60.299 63.158 3.19 0.00 36.29 3.51
132 133 2.786495 CCGCATCCGAGGCTACACT 61.786 63.158 3.19 0.00 36.29 3.55
133 134 2.279517 CCGCATCCGAGGCTACAC 60.280 66.667 3.19 0.00 36.29 2.90
167 171 2.526873 ACGCAGGGGAAGGACTGT 60.527 61.111 0.00 0.00 37.07 3.55
173 177 4.785453 GCCTCCACGCAGGGGAAG 62.785 72.222 1.29 0.00 42.25 3.46
183 188 2.746277 AAATGTCGGCGCCTCCAC 60.746 61.111 26.68 18.25 34.01 4.02
184 189 2.745884 CAAATGTCGGCGCCTCCA 60.746 61.111 26.68 20.72 34.01 3.86
195 200 0.317160 TCGCTCAGGTCGACAAATGT 59.683 50.000 18.91 0.00 0.00 2.71
210 215 1.429825 CGTCATTCGTCTCCTCGCT 59.570 57.895 0.00 0.00 34.52 4.93
211 216 1.586564 CCGTCATTCGTCTCCTCGC 60.587 63.158 0.00 0.00 37.94 5.03
218 223 3.898640 GCGTCGCCGTCATTCGTC 61.899 66.667 5.75 0.00 37.94 4.20
249 254 8.649973 AGATAAAACTTAGAGAAATACCGCAG 57.350 34.615 0.00 0.00 0.00 5.18
308 313 7.900782 ATAATAGATAAAACACGCCGCTTAT 57.099 32.000 0.00 0.00 0.00 1.73
310 315 7.570691 GCTTATAATAGATAAAACACGCCGCTT 60.571 37.037 0.00 0.00 0.00 4.68
374 379 6.148645 ACGAAGCCAACAAATTTGAAACTTTT 59.851 30.769 24.64 10.80 0.00 2.27
375 380 5.641636 ACGAAGCCAACAAATTTGAAACTTT 59.358 32.000 24.64 12.22 0.00 2.66
396 401 0.459585 GCCTTAGATGCGTCCAACGA 60.460 55.000 1.23 0.00 46.05 3.85
398 403 1.398390 CTTGCCTTAGATGCGTCCAAC 59.602 52.381 1.23 0.00 0.00 3.77
404 409 2.537560 CCGGCTTGCCTTAGATGCG 61.538 63.158 10.12 0.00 0.00 4.73
405 410 1.153168 TCCGGCTTGCCTTAGATGC 60.153 57.895 10.12 0.00 0.00 3.91
406 411 0.107703 TGTCCGGCTTGCCTTAGATG 60.108 55.000 10.12 0.00 0.00 2.90
407 412 0.179000 CTGTCCGGCTTGCCTTAGAT 59.821 55.000 10.12 0.00 0.00 1.98
408 413 1.596934 CTGTCCGGCTTGCCTTAGA 59.403 57.895 10.12 1.31 0.00 2.10
409 414 2.109126 GCTGTCCGGCTTGCCTTAG 61.109 63.158 10.12 4.00 0.00 2.18
410 415 2.046314 GCTGTCCGGCTTGCCTTA 60.046 61.111 10.12 0.00 0.00 2.69
411 416 3.909086 GAGCTGTCCGGCTTGCCTT 62.909 63.158 10.12 0.00 43.20 4.35
412 417 4.400961 GAGCTGTCCGGCTTGCCT 62.401 66.667 10.12 0.00 43.20 4.75
421 426 2.222027 CCAAAATATCCGGAGCTGTCC 58.778 52.381 11.34 0.00 39.88 4.02
422 427 2.872858 GACCAAAATATCCGGAGCTGTC 59.127 50.000 11.34 5.84 0.00 3.51
423 428 2.505819 AGACCAAAATATCCGGAGCTGT 59.494 45.455 11.34 0.00 0.00 4.40
450 475 3.546271 GCTTTTTATTCGTTTGGATCCGC 59.454 43.478 7.39 0.00 0.00 5.54
452 477 5.800438 GTCTGCTTTTTATTCGTTTGGATCC 59.200 40.000 4.20 4.20 0.00 3.36
464 489 3.561503 GCGGTTTTCGTCTGCTTTTTAT 58.438 40.909 0.00 0.00 41.72 1.40
465 490 2.600320 CGCGGTTTTCGTCTGCTTTTTA 60.600 45.455 0.00 0.00 41.72 1.52
466 491 1.835121 GCGGTTTTCGTCTGCTTTTT 58.165 45.000 0.00 0.00 41.72 1.94
467 492 0.316689 CGCGGTTTTCGTCTGCTTTT 60.317 50.000 0.00 0.00 41.72 2.27
468 493 1.278637 CGCGGTTTTCGTCTGCTTT 59.721 52.632 0.00 0.00 41.72 3.51
469 494 1.885850 ACGCGGTTTTCGTCTGCTT 60.886 52.632 12.47 0.00 41.72 3.91
470 495 2.279918 ACGCGGTTTTCGTCTGCT 60.280 55.556 12.47 0.00 41.72 4.24
491 516 3.307906 TCACCAACCTCCGACCGG 61.308 66.667 0.00 0.00 0.00 5.28
492 517 2.048503 GTCACCAACCTCCGACCG 60.049 66.667 0.00 0.00 0.00 4.79
493 518 2.346365 GGTCACCAACCTCCGACC 59.654 66.667 0.00 0.00 45.45 4.79
501 526 2.991250 ACATCTATGCTGGTCACCAAC 58.009 47.619 0.00 0.00 30.80 3.77
502 527 3.346315 CAACATCTATGCTGGTCACCAA 58.654 45.455 0.00 0.00 30.80 3.67
503 528 2.356022 CCAACATCTATGCTGGTCACCA 60.356 50.000 0.00 0.00 38.81 4.17
504 529 2.292267 CCAACATCTATGCTGGTCACC 58.708 52.381 4.52 0.00 38.81 4.02
505 530 1.672881 GCCAACATCTATGCTGGTCAC 59.327 52.381 12.68 0.00 44.02 3.67
506 531 1.561076 AGCCAACATCTATGCTGGTCA 59.439 47.619 12.68 0.00 44.02 4.02
507 532 1.945394 CAGCCAACATCTATGCTGGTC 59.055 52.381 12.68 6.51 44.02 4.02
525 550 8.509690 CACATATATCCAAGCTTGTATTTCCAG 58.490 37.037 24.35 10.55 0.00 3.86
527 552 7.575720 GCCACATATATCCAAGCTTGTATTTCC 60.576 40.741 24.35 2.04 0.00 3.13
528 553 7.040478 TGCCACATATATCCAAGCTTGTATTTC 60.040 37.037 24.35 5.83 0.00 2.17
529 554 6.777091 TGCCACATATATCCAAGCTTGTATTT 59.223 34.615 24.35 12.33 0.00 1.40
530 555 6.306199 TGCCACATATATCCAAGCTTGTATT 58.694 36.000 24.35 11.30 0.00 1.89
531 556 5.879763 TGCCACATATATCCAAGCTTGTAT 58.120 37.500 24.35 17.15 0.00 2.29
532 557 5.303259 TGCCACATATATCCAAGCTTGTA 57.697 39.130 24.35 10.26 0.00 2.41
533 558 4.139786 CTGCCACATATATCCAAGCTTGT 58.860 43.478 24.35 10.13 0.00 3.16
534 559 3.057736 GCTGCCACATATATCCAAGCTTG 60.058 47.826 19.93 19.93 0.00 4.01
535 560 3.152341 GCTGCCACATATATCCAAGCTT 58.848 45.455 0.00 0.00 0.00 3.74
536 561 2.553904 GGCTGCCACATATATCCAAGCT 60.554 50.000 15.17 0.00 0.00 3.74
537 562 1.815003 GGCTGCCACATATATCCAAGC 59.185 52.381 15.17 0.00 0.00 4.01
538 563 3.144657 TGGCTGCCACATATATCCAAG 57.855 47.619 19.30 0.00 0.00 3.61
703 739 1.479323 GCCGACAGATGTACAGGGTTA 59.521 52.381 0.33 0.00 0.00 2.85
704 740 0.249398 GCCGACAGATGTACAGGGTT 59.751 55.000 0.33 0.00 0.00 4.11
717 753 1.736365 TAGTGTTCCGTGTGCCGACA 61.736 55.000 0.00 0.00 39.56 4.35
727 767 3.121279 CGGCGATCAATAATAGTGTTCCG 59.879 47.826 0.00 0.00 0.00 4.30
836 876 2.981302 CATGCGAGGACACTGGGA 59.019 61.111 0.00 0.00 0.00 4.37
871 911 2.218603 GTTGTTGTCGTCCCACTGAAT 58.781 47.619 0.00 0.00 0.00 2.57
888 928 5.225129 GCGCTAAAATAGTTTGTGATCGTTG 59.775 40.000 0.00 0.00 0.00 4.10
898 938 2.153680 CGTGCGCGCTAAAATAGTTT 57.846 45.000 33.29 0.00 0.00 2.66
899 939 3.869866 CGTGCGCGCTAAAATAGTT 57.130 47.368 33.29 0.00 0.00 2.24
941 981 3.391955 GGCTAGAGAGAGTGGTACTCCTA 59.608 52.174 5.41 0.68 46.18 2.94
964 1004 1.172812 GGTCTTTCTTTGCCCTGCGT 61.173 55.000 0.00 0.00 0.00 5.24
986 1026 2.604914 GCCGCCATCGATGAAGTATATG 59.395 50.000 26.86 8.24 38.10 1.78
990 1030 1.299850 CGCCGCCATCGATGAAGTA 60.300 57.895 26.86 0.00 38.10 2.24
1037 1077 1.521010 CTCTGCAGCTCCATCACCG 60.521 63.158 9.47 0.00 0.00 4.94
1097 1137 2.032071 GGTACACCAGCGCCTTGT 59.968 61.111 2.29 7.65 35.64 3.16
1122 1165 2.185867 GACCGCATGGGCTCGTTA 59.814 61.111 3.80 0.00 41.70 3.18
1257 1300 4.248402 CGGAACCGCGTAAAGTCA 57.752 55.556 4.92 0.00 0.00 3.41
1325 1368 2.005960 GCATGCCTAGAGGTCGACGT 62.006 60.000 11.12 11.12 37.57 4.34
1352 1395 3.007182 ACAAGTATTTTCGGACGGAGGAA 59.993 43.478 0.00 0.00 0.00 3.36
1353 1396 2.564062 ACAAGTATTTTCGGACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
1354 1397 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1355 1398 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1356 1399 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1357 1400 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1358 1401 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1359 1402 6.797033 CACTTTGATGACAAGTATTTTCGGAC 59.203 38.462 0.00 0.00 37.32 4.79
1360 1403 6.072728 CCACTTTGATGACAAGTATTTTCGGA 60.073 38.462 0.00 0.00 37.32 4.55
1361 1404 6.072728 TCCACTTTGATGACAAGTATTTTCGG 60.073 38.462 0.00 0.00 37.32 4.30
1362 1405 6.898041 TCCACTTTGATGACAAGTATTTTCG 58.102 36.000 0.00 0.00 37.32 3.46
1363 1406 8.099364 TCTCCACTTTGATGACAAGTATTTTC 57.901 34.615 0.00 0.00 37.32 2.29
1364 1407 8.463930 TTCTCCACTTTGATGACAAGTATTTT 57.536 30.769 0.00 0.00 37.32 1.82
1365 1408 8.463930 TTTCTCCACTTTGATGACAAGTATTT 57.536 30.769 0.00 0.00 37.32 1.40
1366 1409 8.463930 TTTTCTCCACTTTGATGACAAGTATT 57.536 30.769 0.00 0.00 37.32 1.89
1367 1410 8.517878 CATTTTCTCCACTTTGATGACAAGTAT 58.482 33.333 0.00 0.00 37.32 2.12
1368 1411 7.719193 TCATTTTCTCCACTTTGATGACAAGTA 59.281 33.333 0.00 0.00 37.32 2.24
1369 1412 6.547141 TCATTTTCTCCACTTTGATGACAAGT 59.453 34.615 0.00 0.00 37.32 3.16
1370 1413 6.973843 TCATTTTCTCCACTTTGATGACAAG 58.026 36.000 0.00 0.00 37.32 3.16
1371 1414 6.547141 ACTCATTTTCTCCACTTTGATGACAA 59.453 34.615 0.00 0.00 0.00 3.18
1372 1415 6.064060 ACTCATTTTCTCCACTTTGATGACA 58.936 36.000 0.00 0.00 0.00 3.58
1373 1416 6.566197 ACTCATTTTCTCCACTTTGATGAC 57.434 37.500 0.00 0.00 0.00 3.06
1374 1417 6.547141 ACAACTCATTTTCTCCACTTTGATGA 59.453 34.615 0.00 0.00 0.00 2.92
1375 1418 6.742109 ACAACTCATTTTCTCCACTTTGATG 58.258 36.000 0.00 0.00 0.00 3.07
1376 1419 6.966534 ACAACTCATTTTCTCCACTTTGAT 57.033 33.333 0.00 0.00 0.00 2.57
1377 1420 7.939039 AGATACAACTCATTTTCTCCACTTTGA 59.061 33.333 0.00 0.00 0.00 2.69
1378 1421 8.019669 CAGATACAACTCATTTTCTCCACTTTG 58.980 37.037 0.00 0.00 0.00 2.77
1379 1422 7.939039 TCAGATACAACTCATTTTCTCCACTTT 59.061 33.333 0.00 0.00 0.00 2.66
1380 1423 7.453393 TCAGATACAACTCATTTTCTCCACTT 58.547 34.615 0.00 0.00 0.00 3.16
1381 1424 7.009179 TCAGATACAACTCATTTTCTCCACT 57.991 36.000 0.00 0.00 0.00 4.00
1382 1425 7.064016 GTCTCAGATACAACTCATTTTCTCCAC 59.936 40.741 0.00 0.00 0.00 4.02
1383 1426 7.038729 AGTCTCAGATACAACTCATTTTCTCCA 60.039 37.037 0.00 0.00 0.00 3.86
1384 1427 7.327214 AGTCTCAGATACAACTCATTTTCTCC 58.673 38.462 0.00 0.00 0.00 3.71
1385 1428 9.862371 TTAGTCTCAGATACAACTCATTTTCTC 57.138 33.333 0.00 0.00 0.00 2.87
1391 1434 9.737427 CGTATTTTAGTCTCAGATACAACTCAT 57.263 33.333 0.00 0.00 0.00 2.90
1392 1435 8.737175 ACGTATTTTAGTCTCAGATACAACTCA 58.263 33.333 0.00 0.00 0.00 3.41
1393 1436 9.570488 AACGTATTTTAGTCTCAGATACAACTC 57.430 33.333 0.00 0.00 0.00 3.01
1394 1437 9.355215 CAACGTATTTTAGTCTCAGATACAACT 57.645 33.333 0.00 0.00 0.00 3.16
1395 1438 9.350357 TCAACGTATTTTAGTCTCAGATACAAC 57.650 33.333 0.00 0.00 0.00 3.32
1396 1439 9.569167 CTCAACGTATTTTAGTCTCAGATACAA 57.431 33.333 0.00 0.00 0.00 2.41
1397 1440 8.953313 TCTCAACGTATTTTAGTCTCAGATACA 58.047 33.333 0.00 0.00 0.00 2.29
1398 1441 9.953697 ATCTCAACGTATTTTAGTCTCAGATAC 57.046 33.333 0.00 0.00 0.00 2.24
1400 1443 9.953697 GTATCTCAACGTATTTTAGTCTCAGAT 57.046 33.333 0.00 0.00 0.00 2.90
1401 1444 8.953313 TGTATCTCAACGTATTTTAGTCTCAGA 58.047 33.333 0.00 0.00 0.00 3.27
1402 1445 9.737427 ATGTATCTCAACGTATTTTAGTCTCAG 57.263 33.333 0.00 0.00 0.00 3.35
1403 1446 9.731819 GATGTATCTCAACGTATTTTAGTCTCA 57.268 33.333 0.00 0.00 0.00 3.27
1404 1447 9.182933 GGATGTATCTCAACGTATTTTAGTCTC 57.817 37.037 0.00 0.00 0.00 3.36
1405 1448 8.142551 GGGATGTATCTCAACGTATTTTAGTCT 58.857 37.037 0.00 0.00 0.00 3.24
1406 1449 8.142551 AGGGATGTATCTCAACGTATTTTAGTC 58.857 37.037 0.00 0.00 0.00 2.59
1407 1450 8.019656 AGGGATGTATCTCAACGTATTTTAGT 57.980 34.615 0.00 0.00 0.00 2.24
1408 1451 8.888579 AAGGGATGTATCTCAACGTATTTTAG 57.111 34.615 0.00 0.00 0.00 1.85
1409 1452 9.675464 AAAAGGGATGTATCTCAACGTATTTTA 57.325 29.630 0.00 0.00 0.00 1.52
1410 1453 8.575649 AAAAGGGATGTATCTCAACGTATTTT 57.424 30.769 0.00 0.00 0.00 1.82
1411 1454 8.575649 AAAAAGGGATGTATCTCAACGTATTT 57.424 30.769 0.00 0.00 0.00 1.40
1412 1455 9.847224 ATAAAAAGGGATGTATCTCAACGTATT 57.153 29.630 0.00 0.00 0.00 1.89
1413 1456 9.490379 GATAAAAAGGGATGTATCTCAACGTAT 57.510 33.333 0.00 0.00 0.00 3.06
1414 1457 7.929785 GGATAAAAAGGGATGTATCTCAACGTA 59.070 37.037 0.00 0.00 0.00 3.57
1415 1458 6.766467 GGATAAAAAGGGATGTATCTCAACGT 59.234 38.462 0.00 0.00 0.00 3.99
1416 1459 6.765989 TGGATAAAAAGGGATGTATCTCAACG 59.234 38.462 0.00 0.00 0.00 4.10
1417 1460 8.697507 ATGGATAAAAAGGGATGTATCTCAAC 57.302 34.615 0.00 0.00 0.00 3.18
1418 1461 9.713684 AAATGGATAAAAAGGGATGTATCTCAA 57.286 29.630 0.00 0.00 0.00 3.02
1419 1462 9.713684 AAAATGGATAAAAAGGGATGTATCTCA 57.286 29.630 0.00 0.00 0.00 3.27
1420 1463 9.971922 CAAAATGGATAAAAAGGGATGTATCTC 57.028 33.333 0.00 0.00 0.00 2.75
1421 1464 9.713684 TCAAAATGGATAAAAAGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
1424 1467 9.486123 TGATCAAAATGGATAAAAAGGGATGTA 57.514 29.630 0.00 0.00 0.00 2.29
1425 1468 8.378115 TGATCAAAATGGATAAAAAGGGATGT 57.622 30.769 0.00 0.00 0.00 3.06
1437 1480 8.796475 CCGGAAATACTTATGATCAAAATGGAT 58.204 33.333 0.00 0.00 0.00 3.41
1438 1481 7.230510 CCCGGAAATACTTATGATCAAAATGGA 59.769 37.037 0.73 0.00 0.00 3.41
1439 1482 7.370383 CCCGGAAATACTTATGATCAAAATGG 58.630 38.462 0.73 0.00 0.00 3.16
1440 1483 6.863126 GCCCGGAAATACTTATGATCAAAATG 59.137 38.462 0.73 0.00 0.00 2.32
1441 1484 6.015434 GGCCCGGAAATACTTATGATCAAAAT 60.015 38.462 0.73 0.00 0.00 1.82
1442 1485 5.300792 GGCCCGGAAATACTTATGATCAAAA 59.699 40.000 0.73 0.00 0.00 2.44
1443 1486 4.825085 GGCCCGGAAATACTTATGATCAAA 59.175 41.667 0.73 0.00 0.00 2.69
1444 1487 4.394729 GGCCCGGAAATACTTATGATCAA 58.605 43.478 0.73 0.00 0.00 2.57
1445 1488 3.556213 CGGCCCGGAAATACTTATGATCA 60.556 47.826 0.73 0.00 0.00 2.92
1446 1489 3.000727 CGGCCCGGAAATACTTATGATC 58.999 50.000 0.73 0.00 0.00 2.92
1447 1490 2.635915 TCGGCCCGGAAATACTTATGAT 59.364 45.455 0.73 0.00 0.00 2.45
1448 1491 2.036733 CTCGGCCCGGAAATACTTATGA 59.963 50.000 0.73 0.00 0.00 2.15
1449 1492 2.413837 CTCGGCCCGGAAATACTTATG 58.586 52.381 0.73 0.00 0.00 1.90
1450 1493 1.346722 CCTCGGCCCGGAAATACTTAT 59.653 52.381 0.73 0.00 0.00 1.73
1451 1494 0.754472 CCTCGGCCCGGAAATACTTA 59.246 55.000 0.73 0.00 0.00 2.24
1452 1495 1.525442 CCTCGGCCCGGAAATACTT 59.475 57.895 0.73 0.00 0.00 2.24
1453 1496 2.440817 CCCTCGGCCCGGAAATACT 61.441 63.158 0.73 0.00 0.00 2.12
1454 1497 2.110420 CCCTCGGCCCGGAAATAC 59.890 66.667 0.73 0.00 0.00 1.89
1455 1498 2.041715 TCCCTCGGCCCGGAAATA 60.042 61.111 0.73 0.00 0.00 1.40
1456 1499 3.480133 CTCCCTCGGCCCGGAAAT 61.480 66.667 0.73 0.00 0.00 2.17
1462 1505 2.056906 ATAATGCACTCCCTCGGCCC 62.057 60.000 0.00 0.00 0.00 5.80
1463 1506 0.179018 AATAATGCACTCCCTCGGCC 60.179 55.000 0.00 0.00 0.00 6.13
1464 1507 1.680338 AAATAATGCACTCCCTCGGC 58.320 50.000 0.00 0.00 0.00 5.54
1465 1508 2.800544 CGTAAATAATGCACTCCCTCGG 59.199 50.000 0.00 0.00 0.00 4.63
1466 1509 3.454375 ACGTAAATAATGCACTCCCTCG 58.546 45.455 0.00 0.00 0.00 4.63
1467 1510 4.748600 GGTACGTAAATAATGCACTCCCTC 59.251 45.833 0.00 0.00 0.00 4.30
1468 1511 4.443881 GGGTACGTAAATAATGCACTCCCT 60.444 45.833 0.00 0.00 0.00 4.20
1469 1512 3.811497 GGGTACGTAAATAATGCACTCCC 59.189 47.826 0.00 0.00 0.00 4.30
1470 1513 3.811497 GGGGTACGTAAATAATGCACTCC 59.189 47.826 0.00 0.00 0.00 3.85
1471 1514 3.811497 GGGGGTACGTAAATAATGCACTC 59.189 47.826 0.00 0.00 0.00 3.51
1472 1515 3.457012 AGGGGGTACGTAAATAATGCACT 59.543 43.478 0.00 0.00 0.00 4.40
1473 1516 3.811497 GAGGGGGTACGTAAATAATGCAC 59.189 47.826 0.00 0.00 0.00 4.57
1474 1517 3.181452 GGAGGGGGTACGTAAATAATGCA 60.181 47.826 0.00 0.00 0.00 3.96
1475 1518 3.405831 GGAGGGGGTACGTAAATAATGC 58.594 50.000 0.00 0.00 0.00 3.56
1476 1519 3.070015 ACGGAGGGGGTACGTAAATAATG 59.930 47.826 0.00 0.00 39.30 1.90
1488 1531 1.961133 TATTTTGAGACGGAGGGGGT 58.039 50.000 0.00 0.00 0.00 4.95
1489 1532 2.238898 ACTTATTTTGAGACGGAGGGGG 59.761 50.000 0.00 0.00 0.00 5.40
1490 1533 3.270877 CACTTATTTTGAGACGGAGGGG 58.729 50.000 0.00 0.00 0.00 4.79
1491 1534 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
1492 1535 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
1493 1536 5.470368 TGAGACACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
1494 1537 5.462530 TGAGACACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 0.00 4.69
1495 1538 6.727824 ATTGAGACACTTATTTTGAGACGG 57.272 37.500 0.00 0.00 0.00 4.79
1496 1539 8.070171 ACAAATTGAGACACTTATTTTGAGACG 58.930 33.333 0.00 0.00 30.46 4.18
1505 1548 9.654663 GGAGTTAGTACAAATTGAGACACTTAT 57.345 33.333 0.00 0.00 0.00 1.73
1506 1549 8.644216 TGGAGTTAGTACAAATTGAGACACTTA 58.356 33.333 0.00 0.00 0.00 2.24
1507 1550 7.506114 TGGAGTTAGTACAAATTGAGACACTT 58.494 34.615 0.00 0.00 0.00 3.16
1508 1551 7.062749 TGGAGTTAGTACAAATTGAGACACT 57.937 36.000 0.00 0.28 0.00 3.55
1509 1552 6.929606 ACTGGAGTTAGTACAAATTGAGACAC 59.070 38.462 0.00 0.00 0.00 3.67
1510 1553 7.062749 ACTGGAGTTAGTACAAATTGAGACA 57.937 36.000 0.00 0.00 0.00 3.41
1535 1578 9.686683 AGTGTCTGAGGCTTAATACAATTTTAT 57.313 29.630 0.00 0.00 0.00 1.40
1536 1579 9.515226 AAGTGTCTGAGGCTTAATACAATTTTA 57.485 29.630 0.00 0.00 0.00 1.52
1537 1580 8.409358 AAGTGTCTGAGGCTTAATACAATTTT 57.591 30.769 0.00 0.00 0.00 1.82
1538 1581 9.686683 ATAAGTGTCTGAGGCTTAATACAATTT 57.313 29.630 10.75 5.60 0.00 1.82
1539 1582 9.686683 AATAAGTGTCTGAGGCTTAATACAATT 57.313 29.630 10.46 10.46 0.00 2.32
1540 1583 9.686683 AAATAAGTGTCTGAGGCTTAATACAAT 57.313 29.630 0.00 0.00 0.00 2.71
1541 1584 9.515226 AAAATAAGTGTCTGAGGCTTAATACAA 57.485 29.630 0.00 0.00 0.00 2.41
1542 1585 8.946085 CAAAATAAGTGTCTGAGGCTTAATACA 58.054 33.333 0.00 0.00 0.00 2.29
1543 1586 8.398665 CCAAAATAAGTGTCTGAGGCTTAATAC 58.601 37.037 0.00 0.00 0.00 1.89
1544 1587 7.556275 CCCAAAATAAGTGTCTGAGGCTTAATA 59.444 37.037 0.00 0.00 0.00 0.98
1545 1588 6.378280 CCCAAAATAAGTGTCTGAGGCTTAAT 59.622 38.462 0.00 0.00 0.00 1.40
1546 1589 5.710099 CCCAAAATAAGTGTCTGAGGCTTAA 59.290 40.000 0.00 0.00 0.00 1.85
1547 1590 5.013704 TCCCAAAATAAGTGTCTGAGGCTTA 59.986 40.000 0.00 4.15 0.00 3.09
1548 1591 4.082125 CCCAAAATAAGTGTCTGAGGCTT 58.918 43.478 0.00 0.45 0.00 4.35
1549 1592 3.330701 TCCCAAAATAAGTGTCTGAGGCT 59.669 43.478 0.00 0.00 0.00 4.58
1550 1593 3.440522 GTCCCAAAATAAGTGTCTGAGGC 59.559 47.826 0.00 0.00 0.00 4.70
1551 1594 3.684788 CGTCCCAAAATAAGTGTCTGAGG 59.315 47.826 0.00 0.00 0.00 3.86
1552 1595 3.684788 CCGTCCCAAAATAAGTGTCTGAG 59.315 47.826 0.00 0.00 0.00 3.35
1553 1596 3.325425 TCCGTCCCAAAATAAGTGTCTGA 59.675 43.478 0.00 0.00 0.00 3.27
1554 1597 3.670625 TCCGTCCCAAAATAAGTGTCTG 58.329 45.455 0.00 0.00 0.00 3.51
1555 1598 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1556 1599 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1557 1600 2.374170 ACCTCCGTCCCAAAATAAGTGT 59.626 45.455 0.00 0.00 0.00 3.55
1558 1601 3.067684 ACCTCCGTCCCAAAATAAGTG 57.932 47.619 0.00 0.00 0.00 3.16
1559 1602 3.842436 AGTACCTCCGTCCCAAAATAAGT 59.158 43.478 0.00 0.00 0.00 2.24
1560 1603 4.482952 AGTACCTCCGTCCCAAAATAAG 57.517 45.455 0.00 0.00 0.00 1.73
1561 1604 5.025453 AGTAGTACCTCCGTCCCAAAATAA 58.975 41.667 0.00 0.00 0.00 1.40
1562 1605 4.613437 AGTAGTACCTCCGTCCCAAAATA 58.387 43.478 0.00 0.00 0.00 1.40
1563 1606 3.447950 AGTAGTACCTCCGTCCCAAAAT 58.552 45.455 0.00 0.00 0.00 1.82
1564 1607 2.893424 AGTAGTACCTCCGTCCCAAAA 58.107 47.619 0.00 0.00 0.00 2.44
1565 1608 2.610438 AGTAGTACCTCCGTCCCAAA 57.390 50.000 0.00 0.00 0.00 3.28
1566 1609 2.610438 AAGTAGTACCTCCGTCCCAA 57.390 50.000 0.00 0.00 0.00 4.12
1567 1610 2.578021 AGTAAGTAGTACCTCCGTCCCA 59.422 50.000 0.00 0.00 32.58 4.37
1568 1611 3.289407 AGTAAGTAGTACCTCCGTCCC 57.711 52.381 0.00 0.00 32.58 4.46
1569 1612 4.097135 GGAAAGTAAGTAGTACCTCCGTCC 59.903 50.000 0.00 0.00 32.58 4.79
1570 1613 4.097135 GGGAAAGTAAGTAGTACCTCCGTC 59.903 50.000 0.00 0.00 36.60 4.79
1571 1614 4.019858 GGGAAAGTAAGTAGTACCTCCGT 58.980 47.826 0.00 0.00 36.60 4.69
1572 1615 3.382865 GGGGAAAGTAAGTAGTACCTCCG 59.617 52.174 0.00 0.00 36.60 4.63
1573 1616 3.382865 CGGGGAAAGTAAGTAGTACCTCC 59.617 52.174 0.00 0.00 35.67 4.30
1574 1617 3.382865 CCGGGGAAAGTAAGTAGTACCTC 59.617 52.174 0.00 0.00 32.58 3.85
1575 1618 3.245766 ACCGGGGAAAGTAAGTAGTACCT 60.246 47.826 6.32 0.00 32.58 3.08
1576 1619 3.099905 ACCGGGGAAAGTAAGTAGTACC 58.900 50.000 6.32 0.00 32.58 3.34
1577 1620 3.763897 TGACCGGGGAAAGTAAGTAGTAC 59.236 47.826 6.32 0.00 0.00 2.73
1578 1621 4.046286 TGACCGGGGAAAGTAAGTAGTA 57.954 45.455 6.32 0.00 0.00 1.82
1579 1622 2.893424 TGACCGGGGAAAGTAAGTAGT 58.107 47.619 6.32 0.00 0.00 2.73
1632 1675 2.097954 CACAAGGCACATCATTATGCGT 59.902 45.455 0.00 0.00 43.02 5.24
1690 1733 9.405587 TCCGAGATTCAATCAAAAATACAAAAC 57.594 29.630 0.00 0.00 0.00 2.43
1724 1767 3.425193 CGACCATGCAAGCAAAAGTTAAC 59.575 43.478 0.00 0.00 0.00 2.01
1755 1798 7.979444 TGAAATTTGTGGTTTTTGGTAAACA 57.021 28.000 0.00 0.00 32.04 2.83
1779 1822 6.810182 GCTATTCATGCACAGTCAGAAATTTT 59.190 34.615 0.00 0.00 0.00 1.82
1792 1835 1.656652 ACTCGTGGCTATTCATGCAC 58.343 50.000 0.00 0.00 0.00 4.57
1802 1845 2.669364 CACGTAAAGTTACTCGTGGCT 58.331 47.619 14.57 0.00 46.12 4.75
1845 1888 3.611025 AGAGGAGATAAGAGGGACCAG 57.389 52.381 0.00 0.00 0.00 4.00
1882 1925 8.652290 AGTTGGTCTGAGTAACTTTTATCTTCT 58.348 33.333 1.78 0.00 30.98 2.85
1883 1926 8.834749 AGTTGGTCTGAGTAACTTTTATCTTC 57.165 34.615 1.78 0.00 30.98 2.87
1884 1927 9.930693 CTAGTTGGTCTGAGTAACTTTTATCTT 57.069 33.333 10.55 0.00 36.22 2.40
1885 1928 9.091220 ACTAGTTGGTCTGAGTAACTTTTATCT 57.909 33.333 10.55 0.00 36.22 1.98
1886 1929 9.708092 AACTAGTTGGTCTGAGTAACTTTTATC 57.292 33.333 7.48 0.00 36.22 1.75
1890 1933 9.490379 CATTAACTAGTTGGTCTGAGTAACTTT 57.510 33.333 18.56 4.77 36.22 2.66
1891 1934 8.867097 TCATTAACTAGTTGGTCTGAGTAACTT 58.133 33.333 18.56 0.00 36.22 2.66
1892 1935 8.418597 TCATTAACTAGTTGGTCTGAGTAACT 57.581 34.615 18.56 10.25 38.19 2.24
1893 1936 9.485206 TTTCATTAACTAGTTGGTCTGAGTAAC 57.515 33.333 18.56 0.00 0.00 2.50
1965 2008 4.373156 ACATGGTTCCTCTTAACTGCTT 57.627 40.909 0.00 0.00 0.00 3.91
1971 2014 7.875554 GGCAAATTTTAACATGGTTCCTCTTAA 59.124 33.333 0.00 0.00 0.00 1.85
1972 2015 7.382898 GGCAAATTTTAACATGGTTCCTCTTA 58.617 34.615 0.00 0.00 0.00 2.10
1973 2016 6.230472 GGCAAATTTTAACATGGTTCCTCTT 58.770 36.000 0.00 0.00 0.00 2.85
1974 2017 5.279960 GGGCAAATTTTAACATGGTTCCTCT 60.280 40.000 0.00 0.00 0.00 3.69
1975 2018 4.935205 GGGCAAATTTTAACATGGTTCCTC 59.065 41.667 0.00 0.00 0.00 3.71
1998 2041 1.202371 GCTGGATGCATCAACATGTGG 60.202 52.381 27.25 5.25 42.31 4.17
2001 2044 4.642445 TTTAGCTGGATGCATCAACATG 57.358 40.909 27.25 12.79 45.94 3.21
2004 2047 4.807304 CCATTTTTAGCTGGATGCATCAAC 59.193 41.667 27.25 15.58 45.94 3.18
2008 2051 3.036091 AGCCATTTTTAGCTGGATGCAT 58.964 40.909 0.00 0.00 45.94 3.96
2047 2095 2.968574 TCCCTTAGCAATGCTCCTCTAG 59.031 50.000 12.53 2.79 40.44 2.43
2059 2107 3.010138 AGCTACCAAACATTCCCTTAGCA 59.990 43.478 0.00 0.00 34.24 3.49
2112 2160 1.150536 TTGGTCAACCCAGCTCCAC 59.849 57.895 0.00 0.00 46.31 4.02
2127 2175 0.684805 AGCTCCGAGGGTAGAGTTGG 60.685 60.000 0.00 0.00 32.47 3.77
2140 2188 0.174845 TGGATTAACGTGGAGCTCCG 59.825 55.000 27.43 18.56 39.43 4.63
2212 2260 3.068590 CGTAAATCGGAGGGCTAAGGTAA 59.931 47.826 0.00 0.00 35.71 2.85
2213 2261 2.624838 CGTAAATCGGAGGGCTAAGGTA 59.375 50.000 0.00 0.00 35.71 3.08
2215 2263 1.411612 ACGTAAATCGGAGGGCTAAGG 59.588 52.381 0.00 0.00 44.69 2.69
2216 2264 2.884894 ACGTAAATCGGAGGGCTAAG 57.115 50.000 0.00 0.00 44.69 2.18
2220 2268 2.410939 GGATAACGTAAATCGGAGGGC 58.589 52.381 0.00 0.00 44.69 5.19
2227 2275 3.400255 GGCCTCAGGGATAACGTAAATC 58.600 50.000 0.00 0.00 33.58 2.17
2233 2281 0.254747 TTTGGGCCTCAGGGATAACG 59.745 55.000 4.53 0.00 33.58 3.18
2244 2292 3.893813 GCAGATCAGATATTTTTGGGCCT 59.106 43.478 4.53 0.00 0.00 5.19
2256 2304 5.046529 GTCAAATCTACGTGCAGATCAGAT 58.953 41.667 0.00 0.00 34.08 2.90
2262 2310 4.794278 TTAGGTCAAATCTACGTGCAGA 57.206 40.909 0.00 0.00 0.00 4.26
2266 2314 4.035208 GGCCAATTAGGTCAAATCTACGTG 59.965 45.833 0.00 0.00 43.39 4.49
2269 2317 4.532834 TGGGCCAATTAGGTCAAATCTAC 58.467 43.478 2.13 0.00 46.80 2.59
2272 2320 6.670695 ATTATGGGCCAATTAGGTCAAATC 57.329 37.500 11.89 0.00 46.80 2.17
2275 2323 6.897966 TGTTAATTATGGGCCAATTAGGTCAA 59.102 34.615 11.89 0.00 46.80 3.18
2285 2333 7.487822 TTTTTCTGATGTTAATTATGGGCCA 57.512 32.000 9.61 9.61 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.