Multiple sequence alignment - TraesCS2B01G057700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G057700 chr2B 100.000 4317 0 0 1 4317 28176998 28172682 0.000000e+00 7973.0
1 TraesCS2B01G057700 chr2B 81.756 1891 322 17 1659 3536 28095177 28093297 0.000000e+00 1559.0
2 TraesCS2B01G057700 chr2B 90.637 267 23 2 395 660 775370117 775369852 1.910000e-93 353.0
3 TraesCS2B01G057700 chr2A 91.230 2269 153 26 1246 3483 17871365 17869112 0.000000e+00 3046.0
4 TraesCS2B01G057700 chr2A 89.234 548 35 6 657 1204 17872051 17871528 0.000000e+00 664.0
5 TraesCS2B01G057700 chr2A 89.776 313 19 7 3754 4053 17866534 17866222 5.240000e-104 388.0
6 TraesCS2B01G057700 chr2A 83.929 224 34 2 3754 3976 17856116 17855894 3.380000e-51 213.0
7 TraesCS2B01G057700 chr2A 88.068 176 11 2 3512 3687 17869114 17868949 2.630000e-47 200.0
8 TraesCS2B01G057700 chr2A 91.919 99 8 0 1 99 17872192 17872094 5.820000e-29 139.0
9 TraesCS2B01G057700 chr2A 100.000 41 0 0 4120 4160 17865850 17865810 4.630000e-10 76.8
10 TraesCS2B01G057700 chr2D 94.471 1917 96 8 1570 3483 15991521 15989612 0.000000e+00 2944.0
11 TraesCS2B01G057700 chr2D 81.334 1934 332 24 1578 3498 15935428 15933511 0.000000e+00 1544.0
12 TraesCS2B01G057700 chr2D 89.030 711 61 9 687 1391 15992236 15991537 0.000000e+00 865.0
13 TraesCS2B01G057700 chr2D 94.843 446 19 3 3754 4195 15989301 15988856 0.000000e+00 693.0
14 TraesCS2B01G057700 chr2D 84.821 224 32 2 3754 3976 15964913 15964691 1.560000e-54 224.0
15 TraesCS2B01G057700 chr2D 89.262 149 15 1 3828 3976 15965846 15965699 7.370000e-43 185.0
16 TraesCS2B01G057700 chr2D 86.364 110 6 2 3562 3671 15989581 15989481 1.270000e-20 111.0
17 TraesCS2B01G057700 chr5D 82.279 1597 266 14 1666 3249 6822536 6820944 0.000000e+00 1365.0
18 TraesCS2B01G057700 chr5D 90.566 265 23 2 395 658 444353833 444354096 2.470000e-92 350.0
19 TraesCS2B01G057700 chr5A 82.114 1599 265 17 1666 3249 3086901 3088493 0.000000e+00 1349.0
20 TraesCS2B01G057700 chr5A 80.134 1646 313 11 1666 3298 34982753 34981109 0.000000e+00 1216.0
21 TraesCS2B01G057700 chr5B 81.727 1598 273 16 1666 3249 862685 861093 0.000000e+00 1315.0
22 TraesCS2B01G057700 chr5B 80.448 1652 307 13 1663 3300 44140302 44141951 0.000000e+00 1247.0
23 TraesCS2B01G057700 chr4A 79.430 1614 280 38 1660 3243 657071329 657072920 0.000000e+00 1094.0
24 TraesCS2B01G057700 chr7A 81.920 1156 195 12 2094 3241 47511682 47512831 0.000000e+00 965.0
25 TraesCS2B01G057700 chr7D 90.141 284 24 4 390 671 392074873 392075154 2.450000e-97 366.0
26 TraesCS2B01G057700 chr3D 90.943 265 22 2 395 658 87391736 87391999 5.310000e-94 355.0
27 TraesCS2B01G057700 chr7B 90.335 269 23 3 391 658 737371523 737371257 2.470000e-92 350.0
28 TraesCS2B01G057700 chr7B 90.335 269 23 3 391 658 737775134 737774868 2.470000e-92 350.0
29 TraesCS2B01G057700 chr3B 90.566 265 23 2 395 658 772172733 772172470 2.470000e-92 350.0
30 TraesCS2B01G057700 chr3B 90.566 265 23 2 395 658 772187481 772187218 2.470000e-92 350.0
31 TraesCS2B01G057700 chr1B 89.568 278 25 4 384 658 642774367 642774643 2.470000e-92 350.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G057700 chr2B 28172682 28176998 4316 True 7973.00 7973 100.0000 1 4317 1 chr2B.!!$R2 4316
1 TraesCS2B01G057700 chr2B 28093297 28095177 1880 True 1559.00 1559 81.7560 1659 3536 1 chr2B.!!$R1 1877
2 TraesCS2B01G057700 chr2A 17865810 17872192 6382 True 752.30 3046 91.7045 1 4160 6 chr2A.!!$R2 4159
3 TraesCS2B01G057700 chr2D 15933511 15935428 1917 True 1544.00 1544 81.3340 1578 3498 1 chr2D.!!$R1 1920
4 TraesCS2B01G057700 chr2D 15988856 15992236 3380 True 1153.25 2944 91.1770 687 4195 4 chr2D.!!$R3 3508
5 TraesCS2B01G057700 chr2D 15964691 15965846 1155 True 204.50 224 87.0415 3754 3976 2 chr2D.!!$R2 222
6 TraesCS2B01G057700 chr5D 6820944 6822536 1592 True 1365.00 1365 82.2790 1666 3249 1 chr5D.!!$R1 1583
7 TraesCS2B01G057700 chr5A 3086901 3088493 1592 False 1349.00 1349 82.1140 1666 3249 1 chr5A.!!$F1 1583
8 TraesCS2B01G057700 chr5A 34981109 34982753 1644 True 1216.00 1216 80.1340 1666 3298 1 chr5A.!!$R1 1632
9 TraesCS2B01G057700 chr5B 861093 862685 1592 True 1315.00 1315 81.7270 1666 3249 1 chr5B.!!$R1 1583
10 TraesCS2B01G057700 chr5B 44140302 44141951 1649 False 1247.00 1247 80.4480 1663 3300 1 chr5B.!!$F1 1637
11 TraesCS2B01G057700 chr4A 657071329 657072920 1591 False 1094.00 1094 79.4300 1660 3243 1 chr4A.!!$F1 1583
12 TraesCS2B01G057700 chr7A 47511682 47512831 1149 False 965.00 965 81.9200 2094 3241 1 chr7A.!!$F1 1147

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 305 0.035739 TCACAAGTTAACGGGAGCCC 59.964 55.0 0.00 0.0 0.00 5.19 F
305 306 0.036306 CACAAGTTAACGGGAGCCCT 59.964 55.0 3.70 0.0 0.00 5.19 F
308 309 0.037734 AAGTTAACGGGAGCCCTTGG 59.962 55.0 3.70 0.0 0.00 3.61 F
941 944 0.106619 CTCCTCCCCGTACTACTGCT 60.107 60.0 0.00 0.0 0.00 4.24 F
971 974 0.108804 GCACTTAGCTCCTGCGTGTA 60.109 55.0 0.00 0.0 45.42 2.90 F
1422 1549 0.246635 TAGAGCTTGGACAAGGCGTC 59.753 55.0 13.41 6.2 44.57 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1396 1523 0.610174 TGTCCAAGCTCTAGCCACAG 59.390 55.000 0.00 0.00 43.38 3.66 R
1399 1526 0.615331 CCTTGTCCAAGCTCTAGCCA 59.385 55.000 1.40 0.00 43.38 4.75 R
1469 1611 1.001974 ACGCTGATACAGTGCCTTTCA 59.998 47.619 11.42 0.00 44.75 2.69 R
2719 2887 1.142748 CGGGATCCAGACTGTGAGC 59.857 63.158 15.23 1.46 0.00 4.26 R
2830 2998 1.883732 CATCGTCACCACGGAGAGT 59.116 57.895 0.00 0.00 46.70 3.24 R
3387 3561 0.680921 AGGGTGCATGTTGATTCCCG 60.681 55.000 0.00 0.00 39.78 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 9.148879 CTCCCATATAGAAAGAGAAGGTAAGAA 57.851 37.037 0.00 0.00 0.00 2.52
61 62 9.148879 TCCCATATAGAAAGAGAAGGTAAGAAG 57.851 37.037 0.00 0.00 0.00 2.85
99 100 5.620738 ACTCATCCTACTTACATGCATGT 57.379 39.130 33.20 33.20 44.48 3.21
100 101 6.731292 ACTCATCCTACTTACATGCATGTA 57.269 37.500 31.03 31.03 41.97 2.29
101 102 6.516718 ACTCATCCTACTTACATGCATGTAC 58.483 40.000 33.74 0.00 42.48 2.90
102 103 5.853936 TCATCCTACTTACATGCATGTACC 58.146 41.667 33.74 0.00 42.48 3.34
105 106 2.325583 ACTTACATGCATGTACCCGG 57.674 50.000 33.74 24.79 42.48 5.73
106 107 1.134220 ACTTACATGCATGTACCCGGG 60.134 52.381 33.74 22.25 42.48 5.73
107 108 0.913205 TTACATGCATGTACCCGGGT 59.087 50.000 33.74 32.66 42.48 5.28
108 109 1.790818 TACATGCATGTACCCGGGTA 58.209 50.000 31.03 30.02 41.97 3.69
109 110 1.136828 ACATGCATGTACCCGGGTAT 58.863 50.000 35.29 20.02 39.68 2.73
111 112 1.071542 CATGCATGTACCCGGGTATCA 59.928 52.381 35.29 30.55 32.82 2.15
112 113 1.429930 TGCATGTACCCGGGTATCAT 58.570 50.000 35.29 31.21 32.82 2.45
117 118 0.974383 GTACCCGGGTATCATGGGAG 59.026 60.000 35.29 0.00 46.41 4.30
118 119 0.834687 TACCCGGGTATCATGGGAGC 60.835 60.000 30.02 0.00 46.41 4.70
119 120 2.146724 CCCGGGTATCATGGGAGCA 61.147 63.158 14.18 0.00 46.41 4.26
121 122 1.071471 CGGGTATCATGGGAGCACC 59.929 63.158 0.00 0.00 40.81 5.01
122 123 1.410850 CGGGTATCATGGGAGCACCT 61.411 60.000 0.00 0.00 41.11 4.00
124 125 1.131638 GGTATCATGGGAGCACCTGA 58.868 55.000 0.00 0.00 41.11 3.86
125 126 1.071385 GGTATCATGGGAGCACCTGAG 59.929 57.143 0.00 0.00 41.11 3.35
135 136 3.000819 CACCTGAGTGCCCGGGTA 61.001 66.667 24.63 16.91 43.67 3.69
136 137 3.001406 ACCTGAGTGCCCGGGTAC 61.001 66.667 32.36 32.36 43.68 3.34
150 151 2.722201 GGTACCTGAGTGCCCGGAG 61.722 68.421 0.73 0.00 42.60 4.63
152 153 1.077805 TACCTGAGTGCCCGGAGAA 59.922 57.895 0.73 0.00 0.00 2.87
153 154 1.255667 TACCTGAGTGCCCGGAGAAC 61.256 60.000 0.73 0.00 0.00 3.01
154 155 2.266055 CTGAGTGCCCGGAGAACC 59.734 66.667 0.73 0.00 0.00 3.62
155 156 3.316573 CTGAGTGCCCGGAGAACCC 62.317 68.421 0.73 0.00 0.00 4.11
164 165 3.319198 GGAGAACCCGGGCACTCA 61.319 66.667 33.50 0.00 0.00 3.41
165 166 2.266055 GAGAACCCGGGCACTCAG 59.734 66.667 30.38 6.39 0.00 3.35
166 167 3.316573 GAGAACCCGGGCACTCAGG 62.317 68.421 30.38 5.70 0.00 3.86
168 169 3.901797 GAACCCGGGCACTCAGGTG 62.902 68.421 24.08 0.00 45.53 4.00
176 177 2.047844 CACTCAGGTGCTCCCGTG 60.048 66.667 0.00 3.37 38.74 4.94
177 178 3.314331 ACTCAGGTGCTCCCGTGG 61.314 66.667 0.00 0.00 38.74 4.94
179 180 1.982395 CTCAGGTGCTCCCGTGGTA 60.982 63.158 0.00 0.00 38.74 3.25
180 181 2.227089 CTCAGGTGCTCCCGTGGTAC 62.227 65.000 0.00 0.00 38.74 3.34
181 182 3.379445 AGGTGCTCCCGTGGTACG 61.379 66.667 0.00 0.00 42.11 3.67
192 193 2.821307 CGTGGTACGGACTTCTAGAC 57.179 55.000 0.00 0.00 38.08 2.59
193 194 1.399791 CGTGGTACGGACTTCTAGACC 59.600 57.143 0.00 0.00 38.08 3.85
204 205 6.789262 CGGACTTCTAGACCGTTAGATTTTA 58.211 40.000 11.19 0.00 45.83 1.52
206 207 7.201679 CGGACTTCTAGACCGTTAGATTTTAGA 60.202 40.741 11.19 0.00 45.83 2.10
208 209 9.667989 GACTTCTAGACCGTTAGATTTTAGATC 57.332 37.037 0.00 0.00 30.20 2.75
209 210 9.186837 ACTTCTAGACCGTTAGATTTTAGATCA 57.813 33.333 0.00 0.00 30.20 2.92
213 214 7.521509 AGACCGTTAGATTTTAGATCAAACG 57.478 36.000 0.00 0.00 38.28 3.60
216 217 6.102006 CGTTAGATTTTAGATCAAACGGCA 57.898 37.500 0.00 0.00 35.76 5.69
218 219 6.846283 CGTTAGATTTTAGATCAAACGGCATC 59.154 38.462 0.00 0.00 35.76 3.91
219 220 5.757850 AGATTTTAGATCAAACGGCATCC 57.242 39.130 0.00 0.00 0.00 3.51
233 234 2.447379 ATCCGGGAGCAGCTGGAT 60.447 61.111 17.12 2.77 36.40 3.41
234 235 2.515071 ATCCGGGAGCAGCTGGATC 61.515 63.158 17.12 4.33 36.50 3.36
235 236 4.598894 CCGGGAGCAGCTGGATCG 62.599 72.222 17.12 0.00 30.89 3.69
237 238 4.925861 GGGAGCAGCTGGATCGGC 62.926 72.222 17.12 0.00 35.73 5.54
243 244 2.364842 AGCTGGATCGGCTGGACT 60.365 61.111 10.38 0.00 45.19 3.85
244 245 1.992277 AGCTGGATCGGCTGGACTT 60.992 57.895 10.38 0.00 45.19 3.01
246 247 1.965754 GCTGGATCGGCTGGACTTCT 61.966 60.000 0.00 0.00 32.24 2.85
247 248 0.179089 CTGGATCGGCTGGACTTCTG 60.179 60.000 0.00 0.00 0.00 3.02
249 250 1.880340 GATCGGCTGGACTTCTGCG 60.880 63.158 0.00 0.00 40.65 5.18
250 251 4.742201 TCGGCTGGACTTCTGCGC 62.742 66.667 0.00 0.00 40.65 6.09
252 253 2.669569 GGCTGGACTTCTGCGCAA 60.670 61.111 13.05 0.00 40.65 4.85
253 254 2.042831 GGCTGGACTTCTGCGCAAT 61.043 57.895 13.05 0.00 40.65 3.56
254 255 1.589716 GGCTGGACTTCTGCGCAATT 61.590 55.000 13.05 0.00 40.65 2.32
255 256 0.242017 GCTGGACTTCTGCGCAATTT 59.758 50.000 13.05 0.00 0.00 1.82
256 257 1.336240 GCTGGACTTCTGCGCAATTTT 60.336 47.619 13.05 0.00 0.00 1.82
257 258 2.589014 CTGGACTTCTGCGCAATTTTC 58.411 47.619 13.05 5.85 0.00 2.29
259 260 2.030893 TGGACTTCTGCGCAATTTTCAG 60.031 45.455 13.05 3.60 0.00 3.02
261 262 3.229552 GACTTCTGCGCAATTTTCAGAC 58.770 45.455 13.05 0.00 36.67 3.51
262 263 2.880890 ACTTCTGCGCAATTTTCAGACT 59.119 40.909 13.05 0.00 36.67 3.24
263 264 3.058639 ACTTCTGCGCAATTTTCAGACTC 60.059 43.478 13.05 0.00 36.67 3.36
264 265 2.771089 TCTGCGCAATTTTCAGACTCT 58.229 42.857 13.05 0.00 32.48 3.24
265 266 2.481568 TCTGCGCAATTTTCAGACTCTG 59.518 45.455 13.05 0.00 32.48 3.35
266 267 2.481568 CTGCGCAATTTTCAGACTCTGA 59.518 45.455 13.05 4.50 38.87 3.27
302 303 4.499037 AAAATCACAAGTTAACGGGAGC 57.501 40.909 0.00 0.00 0.00 4.70
303 304 2.109425 ATCACAAGTTAACGGGAGCC 57.891 50.000 0.00 0.00 0.00 4.70
304 305 0.035739 TCACAAGTTAACGGGAGCCC 59.964 55.000 0.00 0.00 0.00 5.19
305 306 0.036306 CACAAGTTAACGGGAGCCCT 59.964 55.000 3.70 0.00 0.00 5.19
308 309 0.037734 AAGTTAACGGGAGCCCTTGG 59.962 55.000 3.70 0.00 0.00 3.61
310 311 0.255033 GTTAACGGGAGCCCTTGGAT 59.745 55.000 3.70 0.00 0.00 3.41
311 312 0.544697 TTAACGGGAGCCCTTGGATC 59.455 55.000 3.70 0.00 37.39 3.36
313 314 0.326238 AACGGGAGCCCTTGGATCTA 60.326 55.000 3.70 0.00 38.31 1.98
314 315 0.326238 ACGGGAGCCCTTGGATCTAA 60.326 55.000 3.70 0.00 38.31 2.10
315 316 0.837272 CGGGAGCCCTTGGATCTAAA 59.163 55.000 3.70 0.00 38.31 1.85
316 317 1.475213 CGGGAGCCCTTGGATCTAAAC 60.475 57.143 3.70 0.00 38.31 2.01
317 318 1.475213 GGGAGCCCTTGGATCTAAACG 60.475 57.143 0.00 0.00 38.31 3.60
318 319 1.475213 GGAGCCCTTGGATCTAAACGG 60.475 57.143 0.00 0.00 38.31 4.44
319 320 0.546598 AGCCCTTGGATCTAAACGGG 59.453 55.000 10.79 10.79 34.79 5.28
320 321 0.544697 GCCCTTGGATCTAAACGGGA 59.455 55.000 17.42 0.00 33.46 5.14
321 322 1.475213 GCCCTTGGATCTAAACGGGAG 60.475 57.143 17.42 1.57 33.46 4.30
322 323 1.475213 CCCTTGGATCTAAACGGGAGC 60.475 57.143 9.81 0.00 33.46 4.70
323 324 1.475213 CCTTGGATCTAAACGGGAGCC 60.475 57.143 0.00 0.00 39.45 4.70
324 325 0.544697 TTGGATCTAAACGGGAGCCC 59.455 55.000 0.00 0.00 38.36 5.19
325 326 0.326238 TGGATCTAAACGGGAGCCCT 60.326 55.000 3.70 0.00 38.36 5.19
326 327 0.837940 GGATCTAAACGGGAGCCCTT 59.162 55.000 3.70 0.00 33.62 3.95
327 328 1.475213 GGATCTAAACGGGAGCCCTTG 60.475 57.143 3.70 0.00 33.62 3.61
328 329 0.546598 ATCTAAACGGGAGCCCTTGG 59.453 55.000 3.70 0.00 0.00 3.61
330 331 0.546598 CTAAACGGGAGCCCTTGGAT 59.453 55.000 3.70 0.00 0.00 3.41
331 332 1.766496 CTAAACGGGAGCCCTTGGATA 59.234 52.381 3.70 0.00 0.00 2.59
332 333 0.546598 AAACGGGAGCCCTTGGATAG 59.453 55.000 3.70 0.00 0.00 2.08
333 334 1.984288 AACGGGAGCCCTTGGATAGC 61.984 60.000 3.70 0.00 0.00 2.97
335 336 2.444256 GGGAGCCCTTGGATAGCGT 61.444 63.158 0.00 0.00 0.00 5.07
336 337 1.119574 GGGAGCCCTTGGATAGCGTA 61.120 60.000 0.00 0.00 0.00 4.42
337 338 0.318762 GGAGCCCTTGGATAGCGTAG 59.681 60.000 0.00 0.00 0.00 3.51
355 356 3.181367 CACATGAGTGCCGGAAGC 58.819 61.111 5.05 0.00 39.21 3.86
385 386 0.120377 TTCCCCTCCCCTGAAAGCTA 59.880 55.000 0.00 0.00 0.00 3.32
396 397 4.695928 CCCCTGAAAGCTAGAAACACTTAC 59.304 45.833 0.00 0.00 0.00 2.34
397 398 5.513267 CCCCTGAAAGCTAGAAACACTTACT 60.513 44.000 0.00 0.00 0.00 2.24
398 399 5.639931 CCCTGAAAGCTAGAAACACTTACTC 59.360 44.000 0.00 0.00 0.00 2.59
399 400 5.639931 CCTGAAAGCTAGAAACACTTACTCC 59.360 44.000 0.00 0.00 0.00 3.85
400 401 5.548406 TGAAAGCTAGAAACACTTACTCCC 58.452 41.667 0.00 0.00 0.00 4.30
401 402 5.307196 TGAAAGCTAGAAACACTTACTCCCT 59.693 40.000 0.00 0.00 0.00 4.20
402 403 5.408880 AAGCTAGAAACACTTACTCCCTC 57.591 43.478 0.00 0.00 0.00 4.30
403 404 3.770388 AGCTAGAAACACTTACTCCCTCC 59.230 47.826 0.00 0.00 0.00 4.30
404 405 3.429135 GCTAGAAACACTTACTCCCTCCG 60.429 52.174 0.00 0.00 0.00 4.63
405 406 2.606378 AGAAACACTTACTCCCTCCGT 58.394 47.619 0.00 0.00 0.00 4.69
406 407 2.561858 AGAAACACTTACTCCCTCCGTC 59.438 50.000 0.00 0.00 0.00 4.79
407 408 1.264295 AACACTTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
408 409 0.113776 ACACTTACTCCCTCCGTCCA 59.886 55.000 0.00 0.00 0.00 4.02
409 410 1.273098 ACACTTACTCCCTCCGTCCAT 60.273 52.381 0.00 0.00 0.00 3.41
410 411 1.137086 CACTTACTCCCTCCGTCCATG 59.863 57.143 0.00 0.00 0.00 3.66
411 412 1.006758 ACTTACTCCCTCCGTCCATGA 59.993 52.381 0.00 0.00 0.00 3.07
412 413 2.108168 CTTACTCCCTCCGTCCATGAA 58.892 52.381 0.00 0.00 0.00 2.57
413 414 2.241281 TACTCCCTCCGTCCATGAAA 57.759 50.000 0.00 0.00 0.00 2.69
414 415 0.905357 ACTCCCTCCGTCCATGAAAG 59.095 55.000 0.00 0.00 0.00 2.62
415 416 1.195115 CTCCCTCCGTCCATGAAAGA 58.805 55.000 0.00 0.00 0.00 2.52
416 417 1.555075 CTCCCTCCGTCCATGAAAGAA 59.445 52.381 0.00 0.00 0.00 2.52
417 418 2.171448 CTCCCTCCGTCCATGAAAGAAT 59.829 50.000 0.00 0.00 0.00 2.40
418 419 2.092968 TCCCTCCGTCCATGAAAGAATG 60.093 50.000 0.00 0.00 0.00 2.67
419 420 2.356125 CCCTCCGTCCATGAAAGAATGT 60.356 50.000 0.00 0.00 0.00 2.71
420 421 3.118408 CCCTCCGTCCATGAAAGAATGTA 60.118 47.826 0.00 0.00 0.00 2.29
421 422 3.871594 CCTCCGTCCATGAAAGAATGTAC 59.128 47.826 0.00 0.00 0.00 2.90
422 423 4.383118 CCTCCGTCCATGAAAGAATGTACT 60.383 45.833 0.00 0.00 0.00 2.73
423 424 5.160607 TCCGTCCATGAAAGAATGTACTT 57.839 39.130 0.00 0.00 0.00 2.24
424 425 5.175859 TCCGTCCATGAAAGAATGTACTTC 58.824 41.667 0.00 0.00 0.00 3.01
425 426 4.332819 CCGTCCATGAAAGAATGTACTTCC 59.667 45.833 0.00 0.00 34.11 3.46
426 427 4.935205 CGTCCATGAAAGAATGTACTTCCA 59.065 41.667 0.00 0.00 34.11 3.53
427 428 5.411361 CGTCCATGAAAGAATGTACTTCCAA 59.589 40.000 0.00 0.00 34.11 3.53
428 429 6.612306 GTCCATGAAAGAATGTACTTCCAAC 58.388 40.000 0.00 0.00 34.11 3.77
429 430 6.206634 GTCCATGAAAGAATGTACTTCCAACA 59.793 38.462 0.00 0.00 34.11 3.33
430 431 6.947733 TCCATGAAAGAATGTACTTCCAACAT 59.052 34.615 0.00 0.00 39.22 2.71
432 433 7.543172 CCATGAAAGAATGTACTTCCAACATTG 59.457 37.037 6.20 0.00 45.24 2.82
433 434 7.581213 TGAAAGAATGTACTTCCAACATTGT 57.419 32.000 6.20 0.00 45.24 2.71
434 435 8.006298 TGAAAGAATGTACTTCCAACATTGTT 57.994 30.769 6.20 5.95 46.65 2.83
435 436 7.920151 TGAAAGAATGTACTTCCAACATTGTTG 59.080 33.333 20.31 20.31 45.02 3.33
436 437 6.331369 AGAATGTACTTCCAACATTGTTGG 57.669 37.500 33.52 33.52 45.24 3.77
437 438 6.068010 AGAATGTACTTCCAACATTGTTGGA 58.932 36.000 36.29 36.29 45.24 3.53
442 443 2.286365 TCCAACATTGTTGGAGGGTC 57.714 50.000 36.29 0.00 43.17 4.46
443 444 1.496857 TCCAACATTGTTGGAGGGTCA 59.503 47.619 36.29 20.26 43.17 4.02
444 445 2.091610 TCCAACATTGTTGGAGGGTCAA 60.092 45.455 36.29 19.64 43.17 3.18
445 446 2.697751 CCAACATTGTTGGAGGGTCAAA 59.302 45.455 35.18 0.00 42.06 2.69
446 447 3.492482 CCAACATTGTTGGAGGGTCAAAC 60.492 47.826 35.18 0.00 42.06 2.93
447 448 3.312736 ACATTGTTGGAGGGTCAAACT 57.687 42.857 0.00 0.00 0.00 2.66
448 449 4.447138 ACATTGTTGGAGGGTCAAACTA 57.553 40.909 0.00 0.00 0.00 2.24
449 450 4.998051 ACATTGTTGGAGGGTCAAACTAT 58.002 39.130 0.00 0.00 0.00 2.12
450 451 5.010282 ACATTGTTGGAGGGTCAAACTATC 58.990 41.667 0.00 0.00 0.00 2.08
451 452 4.993705 TTGTTGGAGGGTCAAACTATCT 57.006 40.909 0.00 0.00 0.00 1.98
452 453 4.553330 TGTTGGAGGGTCAAACTATCTC 57.447 45.455 0.00 0.00 0.00 2.75
453 454 3.907474 TGTTGGAGGGTCAAACTATCTCA 59.093 43.478 0.00 0.00 0.00 3.27
454 455 4.349636 TGTTGGAGGGTCAAACTATCTCAA 59.650 41.667 0.00 0.00 0.00 3.02
455 456 5.163141 TGTTGGAGGGTCAAACTATCTCAAA 60.163 40.000 0.00 0.00 0.00 2.69
456 457 5.165961 TGGAGGGTCAAACTATCTCAAAG 57.834 43.478 0.00 0.00 0.00 2.77
457 458 4.597507 TGGAGGGTCAAACTATCTCAAAGT 59.402 41.667 0.00 0.00 0.00 2.66
458 459 5.073144 TGGAGGGTCAAACTATCTCAAAGTT 59.927 40.000 0.00 0.00 38.82 2.66
459 460 6.004574 GGAGGGTCAAACTATCTCAAAGTTT 58.995 40.000 0.00 0.00 45.64 2.66
466 467 6.787085 AAACTATCTCAAAGTTTGACCGAG 57.213 37.500 14.35 12.69 43.66 4.63
467 468 5.470047 ACTATCTCAAAGTTTGACCGAGT 57.530 39.130 14.35 13.26 35.46 4.18
468 469 5.855045 ACTATCTCAAAGTTTGACCGAGTT 58.145 37.500 14.35 3.34 35.46 3.01
469 470 6.289064 ACTATCTCAAAGTTTGACCGAGTTT 58.711 36.000 14.35 0.45 35.46 2.66
470 471 4.875544 TCTCAAAGTTTGACCGAGTTTG 57.124 40.909 14.35 2.86 38.28 2.93
471 472 4.258543 TCTCAAAGTTTGACCGAGTTTGT 58.741 39.130 14.35 0.00 38.17 2.83
472 473 4.094294 TCTCAAAGTTTGACCGAGTTTGTG 59.906 41.667 14.35 1.47 38.17 3.33
473 474 2.844122 AAGTTTGACCGAGTTTGTGC 57.156 45.000 0.00 0.00 0.00 4.57
474 475 1.745232 AGTTTGACCGAGTTTGTGCA 58.255 45.000 0.00 0.00 0.00 4.57
475 476 2.088423 AGTTTGACCGAGTTTGTGCAA 58.912 42.857 0.00 0.00 0.00 4.08
476 477 2.490115 AGTTTGACCGAGTTTGTGCAAA 59.510 40.909 0.00 0.00 0.00 3.68
477 478 3.057174 AGTTTGACCGAGTTTGTGCAAAA 60.057 39.130 0.00 0.00 31.33 2.44
478 479 3.577649 TTGACCGAGTTTGTGCAAAAA 57.422 38.095 0.00 0.00 31.33 1.94
479 480 3.791973 TGACCGAGTTTGTGCAAAAAT 57.208 38.095 5.11 0.00 31.33 1.82
480 481 4.902443 TGACCGAGTTTGTGCAAAAATA 57.098 36.364 5.11 0.00 31.33 1.40
481 482 5.446143 TGACCGAGTTTGTGCAAAAATAT 57.554 34.783 5.11 0.00 31.33 1.28
482 483 5.218885 TGACCGAGTTTGTGCAAAAATATG 58.781 37.500 5.11 0.00 31.33 1.78
483 484 5.195001 ACCGAGTTTGTGCAAAAATATGT 57.805 34.783 5.11 0.00 31.33 2.29
484 485 5.219633 ACCGAGTTTGTGCAAAAATATGTC 58.780 37.500 5.11 0.30 31.33 3.06
485 486 5.218885 CCGAGTTTGTGCAAAAATATGTCA 58.781 37.500 5.11 0.00 31.33 3.58
486 487 5.689514 CCGAGTTTGTGCAAAAATATGTCAA 59.310 36.000 5.11 0.00 31.33 3.18
487 488 6.365789 CCGAGTTTGTGCAAAAATATGTCAAT 59.634 34.615 5.11 0.00 31.33 2.57
488 489 7.221970 CGAGTTTGTGCAAAAATATGTCAATG 58.778 34.615 5.11 0.00 31.33 2.82
489 490 6.890558 AGTTTGTGCAAAAATATGTCAATGC 58.109 32.000 5.11 0.00 31.33 3.56
490 491 6.707161 AGTTTGTGCAAAAATATGTCAATGCT 59.293 30.769 5.11 0.00 34.97 3.79
491 492 7.227116 AGTTTGTGCAAAAATATGTCAATGCTT 59.773 29.630 5.11 0.00 34.97 3.91
492 493 6.469139 TGTGCAAAAATATGTCAATGCTTG 57.531 33.333 0.00 0.00 34.97 4.01
493 494 5.990386 TGTGCAAAAATATGTCAATGCTTGT 59.010 32.000 0.00 0.00 34.97 3.16
494 495 6.073711 TGTGCAAAAATATGTCAATGCTTGTG 60.074 34.615 0.00 0.00 34.97 3.33
495 496 6.145858 GTGCAAAAATATGTCAATGCTTGTGA 59.854 34.615 0.00 0.00 34.97 3.58
496 497 6.704937 TGCAAAAATATGTCAATGCTTGTGAA 59.295 30.769 0.00 0.00 34.97 3.18
497 498 7.011189 GCAAAAATATGTCAATGCTTGTGAAC 58.989 34.615 0.00 0.00 0.00 3.18
498 499 7.307278 GCAAAAATATGTCAATGCTTGTGAACA 60.307 33.333 0.00 0.00 0.00 3.18
499 500 8.549548 CAAAAATATGTCAATGCTTGTGAACAA 58.450 29.630 0.00 0.00 0.00 2.83
500 501 8.659925 AAAATATGTCAATGCTTGTGAACAAA 57.340 26.923 0.00 0.00 35.15 2.83
501 502 8.659925 AAATATGTCAATGCTTGTGAACAAAA 57.340 26.923 0.00 0.00 35.15 2.44
502 503 8.836268 AATATGTCAATGCTTGTGAACAAAAT 57.164 26.923 0.00 0.00 35.15 1.82
503 504 9.926158 AATATGTCAATGCTTGTGAACAAAATA 57.074 25.926 0.00 0.00 35.15 1.40
504 505 7.878477 ATGTCAATGCTTGTGAACAAAATAG 57.122 32.000 0.00 0.00 35.15 1.73
505 506 6.215121 TGTCAATGCTTGTGAACAAAATAGG 58.785 36.000 0.00 0.00 35.15 2.57
506 507 6.183360 TGTCAATGCTTGTGAACAAAATAGGT 60.183 34.615 0.00 0.00 35.15 3.08
507 508 7.013750 TGTCAATGCTTGTGAACAAAATAGGTA 59.986 33.333 0.00 0.00 35.15 3.08
508 509 8.028938 GTCAATGCTTGTGAACAAAATAGGTAT 58.971 33.333 0.00 0.00 35.15 2.73
509 510 8.243426 TCAATGCTTGTGAACAAAATAGGTATC 58.757 33.333 0.00 0.00 35.15 2.24
510 511 7.944729 ATGCTTGTGAACAAAATAGGTATCT 57.055 32.000 0.00 0.00 35.15 1.98
511 512 7.144722 TGCTTGTGAACAAAATAGGTATCTG 57.855 36.000 0.00 0.00 35.15 2.90
512 513 6.939730 TGCTTGTGAACAAAATAGGTATCTGA 59.060 34.615 0.00 0.00 35.15 3.27
513 514 7.094805 TGCTTGTGAACAAAATAGGTATCTGAC 60.095 37.037 0.00 0.00 35.15 3.51
514 515 7.094805 GCTTGTGAACAAAATAGGTATCTGACA 60.095 37.037 0.00 0.00 35.15 3.58
515 516 7.905604 TGTGAACAAAATAGGTATCTGACAG 57.094 36.000 0.00 0.00 0.00 3.51
516 517 7.676004 TGTGAACAAAATAGGTATCTGACAGA 58.324 34.615 7.80 7.80 0.00 3.41
517 518 8.154203 TGTGAACAAAATAGGTATCTGACAGAA 58.846 33.333 9.70 0.00 0.00 3.02
518 519 8.999431 GTGAACAAAATAGGTATCTGACAGAAA 58.001 33.333 9.70 0.00 0.00 2.52
519 520 9.567776 TGAACAAAATAGGTATCTGACAGAAAA 57.432 29.630 9.70 0.00 0.00 2.29
646 647 8.631480 AAGTTGGAAGTACACTATTTTAAGGG 57.369 34.615 0.00 0.00 0.00 3.95
647 648 7.752638 AGTTGGAAGTACACTATTTTAAGGGT 58.247 34.615 0.00 0.00 36.88 4.34
648 649 7.664318 AGTTGGAAGTACACTATTTTAAGGGTG 59.336 37.037 0.00 0.00 34.19 4.61
649 650 7.319052 TGGAAGTACACTATTTTAAGGGTGA 57.681 36.000 0.00 0.00 34.19 4.02
650 651 7.747690 TGGAAGTACACTATTTTAAGGGTGAA 58.252 34.615 0.00 0.00 34.19 3.18
651 652 7.881232 TGGAAGTACACTATTTTAAGGGTGAAG 59.119 37.037 0.00 0.00 34.19 3.02
652 653 7.336176 GGAAGTACACTATTTTAAGGGTGAAGG 59.664 40.741 0.00 0.00 34.19 3.46
653 654 6.718294 AGTACACTATTTTAAGGGTGAAGGG 58.282 40.000 0.00 0.00 34.19 3.95
654 655 5.853572 ACACTATTTTAAGGGTGAAGGGA 57.146 39.130 0.00 0.00 29.90 4.20
655 656 5.816682 ACACTATTTTAAGGGTGAAGGGAG 58.183 41.667 0.00 0.00 29.90 4.30
656 657 5.312443 ACACTATTTTAAGGGTGAAGGGAGT 59.688 40.000 0.00 0.00 29.90 3.85
657 658 6.502863 ACACTATTTTAAGGGTGAAGGGAGTA 59.497 38.462 0.00 0.00 29.90 2.59
698 699 3.025978 CTCCTCAATTATTTGCCTGGCA 58.974 45.455 19.30 19.30 36.47 4.92
699 700 2.760092 TCCTCAATTATTTGCCTGGCAC 59.240 45.455 23.30 0.00 38.71 5.01
715 718 4.662468 TGGCACAGCTTAACAAAATGAA 57.338 36.364 0.00 0.00 0.00 2.57
728 731 3.241701 CAAAATGAAATCGTGAACCGGG 58.758 45.455 6.32 0.00 37.11 5.73
737 740 2.285368 TGAACCGGGCTCCCTCAT 60.285 61.111 6.32 0.00 0.00 2.90
744 747 2.381941 GGGCTCCCTCATCTTGGCT 61.382 63.158 0.00 0.00 0.00 4.75
745 748 1.148048 GGCTCCCTCATCTTGGCTC 59.852 63.158 0.00 0.00 0.00 4.70
746 749 1.630126 GGCTCCCTCATCTTGGCTCA 61.630 60.000 0.00 0.00 0.00 4.26
747 750 0.254178 GCTCCCTCATCTTGGCTCAA 59.746 55.000 0.00 0.00 0.00 3.02
748 751 1.340405 GCTCCCTCATCTTGGCTCAAA 60.340 52.381 0.00 0.00 0.00 2.69
749 752 2.363683 CTCCCTCATCTTGGCTCAAAC 58.636 52.381 0.00 0.00 0.00 2.93
750 753 1.988107 TCCCTCATCTTGGCTCAAACT 59.012 47.619 0.00 0.00 0.00 2.66
751 754 2.089980 CCCTCATCTTGGCTCAAACTG 58.910 52.381 0.00 0.00 0.00 3.16
762 765 3.066621 TGGCTCAAACTGTCAAACATGAC 59.933 43.478 0.00 2.09 39.15 3.06
850 853 4.577283 GCTACCTCTGTTCGTATCTCTCTT 59.423 45.833 0.00 0.00 0.00 2.85
911 914 4.789012 TTAGCCTATTTATACGTCCGGG 57.211 45.455 0.00 0.00 0.00 5.73
941 944 0.106619 CTCCTCCCCGTACTACTGCT 60.107 60.000 0.00 0.00 0.00 4.24
971 974 0.108804 GCACTTAGCTCCTGCGTGTA 60.109 55.000 0.00 0.00 45.42 2.90
1017 1020 4.891727 ATGGACGCCGCTAAGCCG 62.892 66.667 0.00 0.00 0.00 5.52
1082 1085 1.134580 CAGCATGGAGAAGACGACCAT 60.135 52.381 0.00 0.00 43.97 3.55
1090 1093 0.248134 GAAGACGACCATCGACGAGG 60.248 60.000 3.01 2.39 43.74 4.63
1153 1156 2.810400 GCCATGCCATACGTCATAGGTT 60.810 50.000 0.00 0.00 0.00 3.50
1157 1160 2.287970 TGCCATACGTCATAGGTTAGCG 60.288 50.000 0.00 0.00 0.00 4.26
1199 1202 6.405538 TGCTTCTGTTTGTTTTCCTTGAAAT 58.594 32.000 0.00 0.00 31.34 2.17
1206 1209 8.810652 TGTTTGTTTTCCTTGAAATAGTATGC 57.189 30.769 0.00 0.00 31.34 3.14
1207 1210 8.637986 TGTTTGTTTTCCTTGAAATAGTATGCT 58.362 29.630 0.00 0.00 31.34 3.79
1215 1219 8.856153 TCCTTGAAATAGTATGCTGTTTTACA 57.144 30.769 6.96 0.00 36.41 2.41
1230 1234 7.223971 TGCTGTTTTACACTGAACACTACTAAG 59.776 37.037 0.00 0.00 32.73 2.18
1239 1243 7.390162 ACACTGAACACTACTAAGTAGGAGTAC 59.610 40.741 6.17 3.03 45.55 2.73
1256 1380 1.941377 TACCAGGGGTACACGACAAT 58.059 50.000 0.00 0.00 37.09 2.71
1258 1382 1.551883 ACCAGGGGTACACGACAATAC 59.448 52.381 0.00 0.00 32.11 1.89
1268 1393 4.095410 ACACGACAATACGATTTCGGTA 57.905 40.909 4.84 0.00 44.95 4.02
1277 1402 8.663771 ACAATACGATTTCGGTAAATTTCAAC 57.336 30.769 4.84 0.00 44.95 3.18
1376 1503 7.786943 AGTAAGAATCCATGGTCTTGATCTCTA 59.213 37.037 22.04 3.48 35.69 2.43
1392 1519 3.085533 TCTCTATATCCTGCCTCTTCGC 58.914 50.000 0.00 0.00 0.00 4.70
1396 1523 0.681733 TATCCTGCCTCTTCGCCATC 59.318 55.000 0.00 0.00 0.00 3.51
1397 1524 1.053264 ATCCTGCCTCTTCGCCATCT 61.053 55.000 0.00 0.00 0.00 2.90
1398 1525 1.523258 CCTGCCTCTTCGCCATCTG 60.523 63.158 0.00 0.00 0.00 2.90
1399 1526 1.220206 CTGCCTCTTCGCCATCTGT 59.780 57.895 0.00 0.00 0.00 3.41
1414 1541 0.898320 TCTGTGGCTAGAGCTTGGAC 59.102 55.000 0.81 0.00 41.70 4.02
1421 1548 0.247736 CTAGAGCTTGGACAAGGCGT 59.752 55.000 13.41 3.13 38.80 5.68
1422 1549 0.246635 TAGAGCTTGGACAAGGCGTC 59.753 55.000 13.41 6.20 44.57 5.19
1452 1594 8.871862 GTCATGATAGTCATTGCTAATCTCATC 58.128 37.037 0.00 0.00 34.28 2.92
1453 1595 8.591072 TCATGATAGTCATTGCTAATCTCATCA 58.409 33.333 0.00 0.00 34.28 3.07
1475 1617 9.778993 CATCAGTTATTGTTGTAAGATGAAAGG 57.221 33.333 0.00 0.00 34.97 3.11
1478 1620 7.538678 CAGTTATTGTTGTAAGATGAAAGGCAC 59.461 37.037 0.00 0.00 0.00 5.01
1488 1630 1.725641 TGAAAGGCACTGTATCAGCG 58.274 50.000 0.00 0.00 40.86 5.18
1499 1641 5.500931 GCACTGTATCAGCGTATTGACTTTC 60.501 44.000 0.00 0.00 34.37 2.62
1507 1649 6.042777 TCAGCGTATTGACTTTCCTTCTATG 58.957 40.000 0.00 0.00 0.00 2.23
1517 1659 7.765307 TGACTTTCCTTCTATGAAAATGATGC 58.235 34.615 0.00 0.00 31.77 3.91
1521 1663 6.688637 TCCTTCTATGAAAATGATGCACAG 57.311 37.500 0.00 0.00 0.00 3.66
1524 1666 7.280876 TCCTTCTATGAAAATGATGCACAGTAC 59.719 37.037 0.00 0.00 0.00 2.73
1526 1668 9.317936 CTTCTATGAAAATGATGCACAGTACTA 57.682 33.333 0.00 0.00 0.00 1.82
1527 1669 9.836864 TTCTATGAAAATGATGCACAGTACTAT 57.163 29.630 0.00 0.00 0.00 2.12
1528 1670 9.836864 TCTATGAAAATGATGCACAGTACTATT 57.163 29.630 0.00 0.00 0.00 1.73
1893 2044 0.388134 GCATCATTCATCGGCATGGC 60.388 55.000 9.69 9.69 0.00 4.40
1914 2065 4.008933 GCTCACCCTCACTGCCGT 62.009 66.667 0.00 0.00 0.00 5.68
2085 2243 0.249573 CAGTTCAACCCACGTACCGT 60.250 55.000 0.00 0.00 42.36 4.83
2200 2358 3.858868 GAGCGACGTCAACTGGGCA 62.859 63.158 17.16 0.00 0.00 5.36
2239 2397 1.377725 CGTGCTCATGGGCCTTTCT 60.378 57.895 16.70 0.00 0.00 2.52
2494 2655 4.316205 TGTACTTTGCTCTGACGAGAAA 57.684 40.909 0.00 0.00 39.74 2.52
2576 2744 3.211963 GCATCATCCCGGTGTGGC 61.212 66.667 0.00 0.00 35.87 5.01
2671 2839 0.462581 GCCGGATCATCAAGTCTGCA 60.463 55.000 5.05 0.00 0.00 4.41
2719 2887 3.982701 TCATTGTCTTTCAAATGCTTGCG 59.017 39.130 0.00 0.00 39.62 4.85
2830 2998 4.108299 ATCGGCATCGGGTTGGCA 62.108 61.111 7.89 0.00 41.97 4.92
2927 3101 0.882927 GCTGGTACCGCAACAACTGA 60.883 55.000 19.50 0.00 0.00 3.41
2929 3103 2.151202 CTGGTACCGCAACAACTGATT 58.849 47.619 7.57 0.00 0.00 2.57
3058 3232 2.912624 GCTGGCAAGCTTCGCAAGT 61.913 57.895 19.80 0.00 46.60 3.16
3082 3256 0.680601 TCATGGTGATTGCGGTGCAT 60.681 50.000 0.00 0.00 38.76 3.96
3139 3313 2.707849 GGCGCAGGACCTAGACGAA 61.708 63.158 10.83 0.00 0.00 3.85
3300 3474 3.374682 GCTCAAAGAAAGCTGCGAC 57.625 52.632 0.00 0.00 36.80 5.19
3331 3505 6.485313 TGCCGGTTTAGTTTAATCTATCATGG 59.515 38.462 1.90 0.00 0.00 3.66
3346 3520 7.500629 TCTATCATGGTGCATAGATTGGTAT 57.499 36.000 0.00 0.00 28.45 2.73
3408 3582 2.733956 GGGAATCAACATGCACCCTAA 58.266 47.619 0.00 0.00 35.03 2.69
3409 3583 3.299503 GGGAATCAACATGCACCCTAAT 58.700 45.455 0.00 0.00 35.03 1.73
3413 3587 5.359576 GGAATCAACATGCACCCTAATGTTA 59.640 40.000 1.04 0.00 43.41 2.41
3448 3628 1.337071 GGGACTGATCAAGCATGCATG 59.663 52.381 22.70 22.70 0.00 4.06
3452 3632 3.815962 GACTGATCAAGCATGCATGAGAT 59.184 43.478 30.64 25.44 0.00 2.75
3454 3634 5.561679 ACTGATCAAGCATGCATGAGATAT 58.438 37.500 30.64 16.41 0.00 1.63
3455 3635 5.412904 ACTGATCAAGCATGCATGAGATATG 59.587 40.000 30.64 21.74 0.00 1.78
3464 3644 3.272581 TGCATGAGATATGTGTGTGGTG 58.727 45.455 0.00 0.00 0.00 4.17
3476 3656 1.484240 TGTGTGGTGTGAGTGTGATGA 59.516 47.619 0.00 0.00 0.00 2.92
3478 3658 2.481568 GTGTGGTGTGAGTGTGATGATG 59.518 50.000 0.00 0.00 0.00 3.07
3479 3659 2.079158 GTGGTGTGAGTGTGATGATGG 58.921 52.381 0.00 0.00 0.00 3.51
3481 3661 2.371510 TGGTGTGAGTGTGATGATGGAA 59.628 45.455 0.00 0.00 0.00 3.53
3482 3662 3.009363 TGGTGTGAGTGTGATGATGGAAT 59.991 43.478 0.00 0.00 0.00 3.01
3483 3663 4.224818 TGGTGTGAGTGTGATGATGGAATA 59.775 41.667 0.00 0.00 0.00 1.75
3486 3666 6.992123 GGTGTGAGTGTGATGATGGAATAATA 59.008 38.462 0.00 0.00 0.00 0.98
3487 3667 7.041780 GGTGTGAGTGTGATGATGGAATAATAC 60.042 40.741 0.00 0.00 0.00 1.89
3489 3669 6.146184 GTGAGTGTGATGATGGAATAATACGG 59.854 42.308 0.00 0.00 0.00 4.02
3490 3670 4.997395 AGTGTGATGATGGAATAATACGGC 59.003 41.667 0.00 0.00 0.00 5.68
3502 3682 2.057137 AATACGGCAGGAATGCATGT 57.943 45.000 0.00 0.00 36.33 3.21
3511 3691 3.011818 CAGGAATGCATGTGAGTAGCAA 58.988 45.455 0.00 0.00 42.15 3.91
3532 3712 1.008079 GCACAGCACCTCAAAGCAC 60.008 57.895 0.00 0.00 0.00 4.40
3541 3721 1.155042 CCTCAAAGCACAGCAGTCTC 58.845 55.000 0.00 0.00 0.00 3.36
3583 3763 3.960571 AGCTCACCTTGTATGATTGCTT 58.039 40.909 0.00 0.00 26.48 3.91
3584 3764 3.693085 AGCTCACCTTGTATGATTGCTTG 59.307 43.478 0.00 0.00 26.48 4.01
3585 3765 3.733077 GCTCACCTTGTATGATTGCTTGC 60.733 47.826 0.00 0.00 0.00 4.01
3586 3766 3.419943 TCACCTTGTATGATTGCTTGCA 58.580 40.909 0.00 0.00 0.00 4.08
3587 3767 4.018490 TCACCTTGTATGATTGCTTGCAT 58.982 39.130 0.00 0.00 0.00 3.96
3588 3768 4.109766 CACCTTGTATGATTGCTTGCATG 58.890 43.478 0.00 0.00 0.00 4.06
3627 3807 2.107178 GATGCACTACGTACGTACAGC 58.893 52.381 27.57 27.57 0.00 4.40
3628 3808 0.873721 TGCACTACGTACGTACAGCA 59.126 50.000 30.68 30.68 34.83 4.41
3629 3809 1.135888 TGCACTACGTACGTACAGCAG 60.136 52.381 30.68 22.92 33.38 4.24
3658 3838 1.753073 GGCTAGTACTTCCGCCAAGTA 59.247 52.381 19.64 2.02 44.13 2.24
3673 3853 5.006746 CCGCCAAGTAGTATTCATCAACTTC 59.993 44.000 0.00 0.00 0.00 3.01
3676 3856 7.653713 CGCCAAGTAGTATTCATCAACTTCTAT 59.346 37.037 0.00 0.00 0.00 1.98
3692 6053 9.793259 TCAACTTCTATTCTCAACCTATTTTGT 57.207 29.630 0.00 0.00 0.00 2.83
3721 6082 3.408288 TTGCTTTTGGTCACGTACAAC 57.592 42.857 0.00 0.00 0.00 3.32
3724 6085 2.853281 GCTTTTGGTCACGTACAACAGC 60.853 50.000 16.71 16.71 41.37 4.40
3745 6106 3.810743 GCCGGTCAATAGATAGGCCAATT 60.811 47.826 5.01 0.00 40.82 2.32
3756 6117 5.116882 AGATAGGCCAATTTACTCGTCAAC 58.883 41.667 5.01 0.00 0.00 3.18
3757 6118 2.433436 AGGCCAATTTACTCGTCAACC 58.567 47.619 5.01 0.00 0.00 3.77
3778 6319 1.605738 GGCCCAGATCATGATGCCC 60.606 63.158 19.41 4.44 39.45 5.36
3794 6335 4.889409 TGATGCCCTAATTCTTTGGTGATC 59.111 41.667 0.00 0.00 0.00 2.92
3838 6379 3.599730 TGTTGTTTGTCATGTTTGGCA 57.400 38.095 0.00 0.00 35.13 4.92
3873 6414 1.123928 CCCTCACGCCCTTCTCTATT 58.876 55.000 0.00 0.00 0.00 1.73
3878 6432 1.757118 CACGCCCTTCTCTATTCCTCA 59.243 52.381 0.00 0.00 0.00 3.86
4015 6570 1.289109 GGTTGACGTGGACATGGACG 61.289 60.000 11.31 11.31 41.41 4.79
4034 6589 1.091771 GTGCATGTCCACCTCCATCG 61.092 60.000 0.00 0.00 0.00 3.84
4070 6625 6.585416 TGAAGTATTAGCTGAGCAATCATCA 58.415 36.000 7.39 7.31 0.00 3.07
4100 6798 5.694458 GGGTGTTTTGATGCTTAACGAAAAT 59.306 36.000 0.00 0.00 0.00 1.82
4110 6808 8.353684 TGATGCTTAACGAAAATGAGGTTTTAA 58.646 29.630 0.00 0.00 40.04 1.52
4160 7020 3.621558 AGCTAGCCCAAAACCTACATTC 58.378 45.455 12.13 0.00 0.00 2.67
4196 7056 9.636789 ACTACTAGATAACATACATGTACACCA 57.363 33.333 7.96 0.00 40.80 4.17
4204 7064 7.650834 AACATACATGTACACCAAAAATTGC 57.349 32.000 7.96 0.00 40.80 3.56
4205 7065 6.162777 ACATACATGTACACCAAAAATTGCC 58.837 36.000 7.96 0.00 39.68 4.52
4206 7066 4.953940 ACATGTACACCAAAAATTGCCT 57.046 36.364 0.00 0.00 0.00 4.75
4207 7067 5.289083 ACATGTACACCAAAAATTGCCTT 57.711 34.783 0.00 0.00 0.00 4.35
4208 7068 5.679601 ACATGTACACCAAAAATTGCCTTT 58.320 33.333 0.00 0.00 0.00 3.11
4209 7069 6.821388 ACATGTACACCAAAAATTGCCTTTA 58.179 32.000 0.00 0.00 0.00 1.85
4210 7070 6.928492 ACATGTACACCAAAAATTGCCTTTAG 59.072 34.615 0.00 0.00 0.00 1.85
4211 7071 6.716934 TGTACACCAAAAATTGCCTTTAGA 57.283 33.333 0.00 0.00 0.00 2.10
4212 7072 6.744112 TGTACACCAAAAATTGCCTTTAGAG 58.256 36.000 0.00 0.00 0.00 2.43
4213 7073 4.631131 ACACCAAAAATTGCCTTTAGAGC 58.369 39.130 0.00 0.00 0.00 4.09
4214 7074 4.344968 ACACCAAAAATTGCCTTTAGAGCT 59.655 37.500 0.00 0.00 0.00 4.09
4215 7075 4.925646 CACCAAAAATTGCCTTTAGAGCTC 59.074 41.667 5.27 5.27 0.00 4.09
4216 7076 4.168760 CCAAAAATTGCCTTTAGAGCTCG 58.831 43.478 8.37 0.00 0.00 5.03
4217 7077 4.168760 CAAAAATTGCCTTTAGAGCTCGG 58.831 43.478 8.37 4.41 0.00 4.63
4218 7078 1.383523 AATTGCCTTTAGAGCTCGGC 58.616 50.000 19.97 19.97 42.78 5.54
4219 7079 0.464554 ATTGCCTTTAGAGCTCGGCC 60.465 55.000 22.74 9.42 41.80 6.13
4220 7080 1.553690 TTGCCTTTAGAGCTCGGCCT 61.554 55.000 22.74 3.37 41.80 5.19
4221 7081 1.227409 GCCTTTAGAGCTCGGCCTC 60.227 63.158 16.99 0.00 36.56 4.70
4222 7082 1.443828 CCTTTAGAGCTCGGCCTCC 59.556 63.158 8.37 0.00 32.17 4.30
4223 7083 1.330655 CCTTTAGAGCTCGGCCTCCA 61.331 60.000 8.37 0.00 32.17 3.86
4224 7084 0.755686 CTTTAGAGCTCGGCCTCCAT 59.244 55.000 8.37 0.00 32.17 3.41
4225 7085 1.964223 CTTTAGAGCTCGGCCTCCATA 59.036 52.381 8.37 0.00 32.17 2.74
4226 7086 1.621992 TTAGAGCTCGGCCTCCATAG 58.378 55.000 8.37 0.00 32.17 2.23
4227 7087 0.771755 TAGAGCTCGGCCTCCATAGA 59.228 55.000 8.37 0.00 32.17 1.98
4228 7088 0.539438 AGAGCTCGGCCTCCATAGAG 60.539 60.000 8.37 0.00 40.09 2.43
4241 7101 4.671831 CTCCATAGAGGCCTCTAGATTCA 58.328 47.826 38.40 23.14 44.47 2.57
4242 7102 5.079998 TCCATAGAGGCCTCTAGATTCAA 57.920 43.478 38.40 22.46 44.47 2.69
4243 7103 5.467738 TCCATAGAGGCCTCTAGATTCAAA 58.532 41.667 38.40 21.76 44.47 2.69
4244 7104 6.087456 TCCATAGAGGCCTCTAGATTCAAAT 58.913 40.000 38.40 22.90 44.47 2.32
4245 7105 6.560304 TCCATAGAGGCCTCTAGATTCAAATT 59.440 38.462 38.40 21.33 44.47 1.82
4246 7106 7.072961 TCCATAGAGGCCTCTAGATTCAAATTT 59.927 37.037 38.40 20.68 44.47 1.82
4247 7107 7.390162 CCATAGAGGCCTCTAGATTCAAATTTC 59.610 40.741 38.40 8.86 44.47 2.17
4248 7108 6.319048 AGAGGCCTCTAGATTCAAATTTCA 57.681 37.500 34.40 0.00 38.35 2.69
4249 7109 6.725364 AGAGGCCTCTAGATTCAAATTTCAA 58.275 36.000 34.40 0.00 38.35 2.69
4250 7110 7.177878 AGAGGCCTCTAGATTCAAATTTCAAA 58.822 34.615 34.40 0.00 38.35 2.69
4251 7111 7.838193 AGAGGCCTCTAGATTCAAATTTCAAAT 59.162 33.333 34.40 2.36 38.35 2.32
4252 7112 8.371571 AGGCCTCTAGATTCAAATTTCAAATT 57.628 30.769 0.00 0.00 0.00 1.82
4253 7113 8.819845 AGGCCTCTAGATTCAAATTTCAAATTT 58.180 29.630 0.00 1.98 0.00 1.82
4254 7114 9.091784 GGCCTCTAGATTCAAATTTCAAATTTC 57.908 33.333 5.04 0.00 0.00 2.17
4255 7115 9.643693 GCCTCTAGATTCAAATTTCAAATTTCA 57.356 29.630 5.04 0.00 0.00 2.69
4316 7176 8.677300 TGAAGAAATAAAGATACACATGAAGGC 58.323 33.333 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.730784 TCTTACCTTCTCTTTCTATATGGGAGG 59.269 40.741 0.00 0.00 0.00 4.30
44 45 6.937465 ACATGAACCTTCTTACCTTCTCTTTC 59.063 38.462 0.00 0.00 0.00 2.62
99 100 0.834687 GCTCCCATGATACCCGGGTA 60.835 60.000 34.92 34.92 41.12 3.69
100 101 2.147387 GCTCCCATGATACCCGGGT 61.147 63.158 32.66 32.66 41.12 5.28
101 102 2.146724 TGCTCCCATGATACCCGGG 61.147 63.158 22.25 22.25 41.76 5.73
102 103 1.071471 GTGCTCCCATGATACCCGG 59.929 63.158 0.00 0.00 0.00 5.73
105 106 1.071385 CTCAGGTGCTCCCATGATACC 59.929 57.143 0.00 0.00 34.66 2.73
106 107 1.765314 ACTCAGGTGCTCCCATGATAC 59.235 52.381 0.00 0.00 34.66 2.24
107 108 1.764723 CACTCAGGTGCTCCCATGATA 59.235 52.381 0.00 0.00 36.61 2.15
108 109 0.545171 CACTCAGGTGCTCCCATGAT 59.455 55.000 0.00 0.00 36.61 2.45
109 110 1.985614 CACTCAGGTGCTCCCATGA 59.014 57.895 0.00 0.00 36.61 3.07
118 119 3.000819 TACCCGGGCACTCAGGTG 61.001 66.667 24.08 0.00 45.53 4.00
119 120 3.001406 GTACCCGGGCACTCAGGT 61.001 66.667 24.08 0.00 36.36 4.00
121 122 2.683933 AGGTACCCGGGCACTCAG 60.684 66.667 24.08 0.00 0.00 3.35
122 123 3.000819 CAGGTACCCGGGCACTCA 61.001 66.667 24.08 0.00 0.00 3.41
124 125 2.683933 CTCAGGTACCCGGGCACT 60.684 66.667 24.08 13.97 0.00 4.40
125 126 3.001406 ACTCAGGTACCCGGGCAC 61.001 66.667 24.08 19.90 0.00 5.01
128 129 3.782443 GGCACTCAGGTACCCGGG 61.782 72.222 22.25 22.25 0.00 5.73
131 132 3.782443 CCGGGCACTCAGGTACCC 61.782 72.222 8.74 0.00 43.90 3.69
132 133 2.682494 TCCGGGCACTCAGGTACC 60.682 66.667 2.73 2.73 0.00 3.34
134 135 1.077805 TTCTCCGGGCACTCAGGTA 59.922 57.895 0.00 0.00 0.00 3.08
135 136 2.203788 TTCTCCGGGCACTCAGGT 60.204 61.111 0.00 0.00 0.00 4.00
136 137 2.266055 GTTCTCCGGGCACTCAGG 59.734 66.667 0.00 0.00 0.00 3.86
137 138 2.266055 GGTTCTCCGGGCACTCAG 59.734 66.667 0.00 0.00 0.00 3.35
138 139 3.319198 GGGTTCTCCGGGCACTCA 61.319 66.667 0.00 0.00 33.83 3.41
147 148 3.316573 CTGAGTGCCCGGGTTCTCC 62.317 68.421 30.05 19.06 0.00 3.71
148 149 2.266055 CTGAGTGCCCGGGTTCTC 59.734 66.667 28.11 28.11 0.00 2.87
150 151 3.637273 ACCTGAGTGCCCGGGTTC 61.637 66.667 24.63 17.72 42.98 3.62
159 160 2.047844 CACGGGAGCACCTGAGTG 60.048 66.667 16.69 11.95 44.87 3.51
161 162 1.982395 TACCACGGGAGCACCTGAG 60.982 63.158 16.69 7.78 44.87 3.35
162 163 2.118732 TACCACGGGAGCACCTGA 59.881 61.111 16.69 0.00 44.87 3.86
164 165 3.379445 CGTACCACGGGAGCACCT 61.379 66.667 0.00 0.00 38.08 4.00
173 174 1.399791 GGTCTAGAAGTCCGTACCACG 59.600 57.143 0.00 0.00 42.11 4.94
174 175 1.399791 CGGTCTAGAAGTCCGTACCAC 59.600 57.143 11.19 0.00 41.01 4.16
175 176 1.742761 CGGTCTAGAAGTCCGTACCA 58.257 55.000 11.19 0.00 41.01 3.25
181 182 7.994194 TCTAAAATCTAACGGTCTAGAAGTCC 58.006 38.462 0.00 0.00 31.76 3.85
182 183 9.667989 GATCTAAAATCTAACGGTCTAGAAGTC 57.332 37.037 0.00 0.00 31.76 3.01
186 187 9.798994 GTTTGATCTAAAATCTAACGGTCTAGA 57.201 33.333 0.00 0.00 32.53 2.43
187 188 8.744011 CGTTTGATCTAAAATCTAACGGTCTAG 58.256 37.037 19.66 0.00 45.87 2.43
188 189 8.624701 CGTTTGATCTAAAATCTAACGGTCTA 57.375 34.615 19.66 0.00 45.87 2.59
189 190 7.521509 CGTTTGATCTAAAATCTAACGGTCT 57.478 36.000 19.66 0.00 45.87 3.85
194 195 7.132863 GGATGCCGTTTGATCTAAAATCTAAC 58.867 38.462 0.00 3.33 32.91 2.34
195 196 6.018262 CGGATGCCGTTTGATCTAAAATCTAA 60.018 38.462 0.00 0.00 42.73 2.10
198 199 4.527564 CGGATGCCGTTTGATCTAAAATC 58.472 43.478 0.00 0.00 42.73 2.17
199 200 3.315191 CCGGATGCCGTTTGATCTAAAAT 59.685 43.478 0.00 0.00 46.80 1.82
200 201 2.680841 CCGGATGCCGTTTGATCTAAAA 59.319 45.455 0.00 0.00 46.80 1.52
204 205 1.153168 CCCGGATGCCGTTTGATCT 60.153 57.895 0.73 0.00 46.80 2.75
206 207 1.153168 CTCCCGGATGCCGTTTGAT 60.153 57.895 0.73 0.00 46.80 2.57
208 209 3.508840 GCTCCCGGATGCCGTTTG 61.509 66.667 0.73 0.00 46.80 2.93
209 210 3.976701 CTGCTCCCGGATGCCGTTT 62.977 63.158 0.73 0.00 46.80 3.60
215 216 2.728443 GATCCAGCTGCTCCCGGATG 62.728 65.000 20.83 0.73 38.38 3.51
216 217 2.447379 ATCCAGCTGCTCCCGGAT 60.447 61.111 8.66 12.77 33.31 4.18
218 219 4.598894 CGATCCAGCTGCTCCCGG 62.599 72.222 8.66 0.00 0.00 5.73
219 220 4.598894 CCGATCCAGCTGCTCCCG 62.599 72.222 8.66 8.50 0.00 5.14
220 221 4.925861 GCCGATCCAGCTGCTCCC 62.926 72.222 8.66 0.00 0.00 4.30
221 222 3.859414 AGCCGATCCAGCTGCTCC 61.859 66.667 8.66 0.00 39.69 4.70
227 228 1.522580 GAAGTCCAGCCGATCCAGC 60.523 63.158 0.00 0.00 0.00 4.85
228 229 0.179089 CAGAAGTCCAGCCGATCCAG 60.179 60.000 0.00 0.00 0.00 3.86
233 234 4.742201 GCGCAGAAGTCCAGCCGA 62.742 66.667 0.30 0.00 0.00 5.54
235 236 1.589716 AATTGCGCAGAAGTCCAGCC 61.590 55.000 11.31 0.00 0.00 4.85
237 238 2.030893 TGAAAATTGCGCAGAAGTCCAG 60.031 45.455 11.31 0.00 0.00 3.86
238 239 1.952990 TGAAAATTGCGCAGAAGTCCA 59.047 42.857 11.31 3.19 0.00 4.02
239 240 2.226437 TCTGAAAATTGCGCAGAAGTCC 59.774 45.455 11.31 0.28 35.87 3.85
241 242 2.880890 AGTCTGAAAATTGCGCAGAAGT 59.119 40.909 11.31 0.00 40.05 3.01
243 244 3.058708 CAGAGTCTGAAAATTGCGCAGAA 60.059 43.478 15.46 0.00 40.05 3.02
244 245 2.481568 CAGAGTCTGAAAATTGCGCAGA 59.518 45.455 15.46 1.94 36.40 4.26
246 247 2.493035 TCAGAGTCTGAAAATTGCGCA 58.507 42.857 20.65 5.66 37.57 6.09
247 248 3.542712 TTCAGAGTCTGAAAATTGCGC 57.457 42.857 29.18 0.00 45.84 6.09
255 256 4.696479 AAAGCCTCTTTCAGAGTCTGAA 57.304 40.909 27.96 27.96 46.93 3.02
256 257 4.696479 AAAAGCCTCTTTCAGAGTCTGA 57.304 40.909 19.10 19.10 40.72 3.27
257 258 6.867662 TTTAAAAGCCTCTTTCAGAGTCTG 57.132 37.500 14.36 14.36 40.72 3.51
280 281 4.261867 GGCTCCCGTTAACTTGTGATTTTT 60.262 41.667 3.71 0.00 0.00 1.94
281 282 3.254903 GGCTCCCGTTAACTTGTGATTTT 59.745 43.478 3.71 0.00 0.00 1.82
282 283 2.817844 GGCTCCCGTTAACTTGTGATTT 59.182 45.455 3.71 0.00 0.00 2.17
283 284 2.433436 GGCTCCCGTTAACTTGTGATT 58.567 47.619 3.71 0.00 0.00 2.57
284 285 1.339727 GGGCTCCCGTTAACTTGTGAT 60.340 52.381 3.71 0.00 0.00 3.06
285 286 0.035739 GGGCTCCCGTTAACTTGTGA 59.964 55.000 3.71 0.00 0.00 3.58
286 287 0.036306 AGGGCTCCCGTTAACTTGTG 59.964 55.000 3.71 0.00 41.95 3.33
288 289 1.165270 CAAGGGCTCCCGTTAACTTG 58.835 55.000 3.71 0.00 41.95 3.16
289 290 0.037734 CCAAGGGCTCCCGTTAACTT 59.962 55.000 3.71 0.00 41.95 2.66
290 291 0.838987 TCCAAGGGCTCCCGTTAACT 60.839 55.000 3.71 0.00 41.95 2.24
292 293 0.544697 GATCCAAGGGCTCCCGTTAA 59.455 55.000 0.00 0.00 41.95 2.01
294 295 0.326238 TAGATCCAAGGGCTCCCGTT 60.326 55.000 0.00 0.00 41.95 4.44
295 296 0.326238 TTAGATCCAAGGGCTCCCGT 60.326 55.000 0.00 0.00 41.95 5.28
298 299 1.475213 CCGTTTAGATCCAAGGGCTCC 60.475 57.143 2.00 0.00 0.00 4.70
299 300 1.475213 CCCGTTTAGATCCAAGGGCTC 60.475 57.143 8.01 0.00 31.58 4.70
301 302 0.544697 TCCCGTTTAGATCCAAGGGC 59.455 55.000 8.01 0.00 38.73 5.19
302 303 1.475213 GCTCCCGTTTAGATCCAAGGG 60.475 57.143 6.91 6.91 40.16 3.95
303 304 1.475213 GGCTCCCGTTTAGATCCAAGG 60.475 57.143 0.00 0.00 0.00 3.61
304 305 1.475213 GGGCTCCCGTTTAGATCCAAG 60.475 57.143 0.00 0.00 0.00 3.61
305 306 0.544697 GGGCTCCCGTTTAGATCCAA 59.455 55.000 0.00 0.00 0.00 3.53
308 309 1.475213 CCAAGGGCTCCCGTTTAGATC 60.475 57.143 0.00 0.00 41.95 2.75
310 311 0.545787 TCCAAGGGCTCCCGTTTAGA 60.546 55.000 0.00 0.00 41.95 2.10
311 312 0.546598 ATCCAAGGGCTCCCGTTTAG 59.453 55.000 0.00 0.00 41.95 1.85
313 314 0.546598 CTATCCAAGGGCTCCCGTTT 59.453 55.000 0.00 0.00 41.95 3.60
314 315 1.984288 GCTATCCAAGGGCTCCCGTT 61.984 60.000 0.00 0.00 41.95 4.44
315 316 2.444256 GCTATCCAAGGGCTCCCGT 61.444 63.158 0.00 0.00 41.95 5.28
316 317 2.427753 GCTATCCAAGGGCTCCCG 59.572 66.667 0.00 0.00 41.95 5.14
317 318 1.119574 TACGCTATCCAAGGGCTCCC 61.120 60.000 0.00 0.00 41.81 4.30
318 319 0.318762 CTACGCTATCCAAGGGCTCC 59.681 60.000 0.00 0.00 41.81 4.70
319 320 0.319986 GCTACGCTATCCAAGGGCTC 60.320 60.000 0.00 0.00 41.81 4.70
320 321 1.048724 TGCTACGCTATCCAAGGGCT 61.049 55.000 0.00 0.00 41.81 5.19
321 322 0.880718 GTGCTACGCTATCCAAGGGC 60.881 60.000 0.00 0.00 41.81 5.19
322 323 0.464036 TGTGCTACGCTATCCAAGGG 59.536 55.000 0.00 0.00 43.65 3.95
323 324 2.138320 CATGTGCTACGCTATCCAAGG 58.862 52.381 0.00 0.00 0.00 3.61
324 325 3.055591 CTCATGTGCTACGCTATCCAAG 58.944 50.000 0.00 0.00 0.00 3.61
325 326 2.430694 ACTCATGTGCTACGCTATCCAA 59.569 45.455 0.00 0.00 0.00 3.53
326 327 2.031870 ACTCATGTGCTACGCTATCCA 58.968 47.619 0.00 0.00 0.00 3.41
327 328 2.398498 CACTCATGTGCTACGCTATCC 58.602 52.381 0.00 0.00 37.38 2.59
360 361 4.474394 CTTTCAGGGGAGGGGAAAATATC 58.526 47.826 0.00 0.00 30.87 1.63
361 362 3.374208 GCTTTCAGGGGAGGGGAAAATAT 60.374 47.826 0.00 0.00 30.87 1.28
362 363 2.024369 GCTTTCAGGGGAGGGGAAAATA 60.024 50.000 0.00 0.00 30.87 1.40
363 364 1.273267 GCTTTCAGGGGAGGGGAAAAT 60.273 52.381 0.00 0.00 30.87 1.82
364 365 0.114364 GCTTTCAGGGGAGGGGAAAA 59.886 55.000 0.00 0.00 30.87 2.29
365 366 0.776080 AGCTTTCAGGGGAGGGGAAA 60.776 55.000 0.00 0.00 0.00 3.13
366 367 0.120377 TAGCTTTCAGGGGAGGGGAA 59.880 55.000 0.00 0.00 0.00 3.97
367 368 0.326618 CTAGCTTTCAGGGGAGGGGA 60.327 60.000 0.00 0.00 0.00 4.81
368 369 0.326618 TCTAGCTTTCAGGGGAGGGG 60.327 60.000 0.00 0.00 0.00 4.79
369 370 1.584724 TTCTAGCTTTCAGGGGAGGG 58.415 55.000 0.00 0.00 0.00 4.30
385 386 2.561858 GACGGAGGGAGTAAGTGTTTCT 59.438 50.000 0.00 0.00 0.00 2.52
396 397 1.195115 TCTTTCATGGACGGAGGGAG 58.805 55.000 0.00 0.00 0.00 4.30
397 398 1.651737 TTCTTTCATGGACGGAGGGA 58.348 50.000 0.00 0.00 0.00 4.20
398 399 2.292267 CATTCTTTCATGGACGGAGGG 58.708 52.381 0.00 0.00 0.00 4.30
399 400 2.991250 ACATTCTTTCATGGACGGAGG 58.009 47.619 0.00 0.00 0.00 4.30
400 401 4.759782 AGTACATTCTTTCATGGACGGAG 58.240 43.478 0.00 0.00 42.24 4.63
401 402 4.819105 AGTACATTCTTTCATGGACGGA 57.181 40.909 0.00 0.00 42.24 4.69
402 403 4.332819 GGAAGTACATTCTTTCATGGACGG 59.667 45.833 0.00 0.00 42.24 4.79
403 404 4.935205 TGGAAGTACATTCTTTCATGGACG 59.065 41.667 0.00 0.00 42.24 4.79
404 405 6.206634 TGTTGGAAGTACATTCTTTCATGGAC 59.793 38.462 0.00 0.00 38.18 4.02
405 406 6.303054 TGTTGGAAGTACATTCTTTCATGGA 58.697 36.000 0.00 0.00 38.07 3.41
406 407 6.573664 TGTTGGAAGTACATTCTTTCATGG 57.426 37.500 0.00 0.00 38.07 3.66
407 408 8.084073 ACAATGTTGGAAGTACATTCTTTCATG 58.916 33.333 0.00 0.00 42.63 3.07
408 409 8.181904 ACAATGTTGGAAGTACATTCTTTCAT 57.818 30.769 0.00 1.26 42.63 2.57
409 410 7.581213 ACAATGTTGGAAGTACATTCTTTCA 57.419 32.000 0.00 0.00 42.63 2.69
410 411 7.382218 CCAACAATGTTGGAAGTACATTCTTTC 59.618 37.037 34.84 0.00 42.63 2.62
411 412 7.069331 TCCAACAATGTTGGAAGTACATTCTTT 59.931 33.333 37.14 0.00 44.90 2.52
412 413 6.549364 TCCAACAATGTTGGAAGTACATTCTT 59.451 34.615 37.14 0.00 44.90 2.52
413 414 6.068010 TCCAACAATGTTGGAAGTACATTCT 58.932 36.000 37.14 0.00 44.90 2.40
414 415 6.325919 TCCAACAATGTTGGAAGTACATTC 57.674 37.500 37.14 0.00 44.90 2.67
415 416 5.243730 CCTCCAACAATGTTGGAAGTACATT 59.756 40.000 37.55 0.00 46.85 2.71
416 417 4.766891 CCTCCAACAATGTTGGAAGTACAT 59.233 41.667 37.55 0.00 46.85 2.29
417 418 4.141287 CCTCCAACAATGTTGGAAGTACA 58.859 43.478 37.55 21.18 46.85 2.90
418 419 3.506067 CCCTCCAACAATGTTGGAAGTAC 59.494 47.826 37.55 0.00 46.85 2.73
419 420 3.139397 ACCCTCCAACAATGTTGGAAGTA 59.861 43.478 37.55 22.12 46.85 2.24
420 421 2.091333 ACCCTCCAACAATGTTGGAAGT 60.091 45.455 37.55 33.34 46.85 3.01
421 422 2.558359 GACCCTCCAACAATGTTGGAAG 59.442 50.000 37.55 32.85 46.85 3.46
422 423 2.091610 TGACCCTCCAACAATGTTGGAA 60.092 45.455 37.55 25.11 46.85 3.53
423 424 1.496857 TGACCCTCCAACAATGTTGGA 59.503 47.619 36.57 36.57 45.61 3.53
424 425 1.993956 TGACCCTCCAACAATGTTGG 58.006 50.000 33.06 33.06 40.87 3.77
425 426 3.384467 AGTTTGACCCTCCAACAATGTTG 59.616 43.478 18.45 18.45 0.00 3.33
426 427 3.642141 AGTTTGACCCTCCAACAATGTT 58.358 40.909 0.00 0.00 0.00 2.71
427 428 3.312736 AGTTTGACCCTCCAACAATGT 57.687 42.857 0.00 0.00 0.00 2.71
428 429 5.256474 AGATAGTTTGACCCTCCAACAATG 58.744 41.667 0.00 0.00 0.00 2.82
429 430 5.014123 TGAGATAGTTTGACCCTCCAACAAT 59.986 40.000 0.00 0.00 0.00 2.71
430 431 4.349636 TGAGATAGTTTGACCCTCCAACAA 59.650 41.667 0.00 0.00 0.00 2.83
431 432 3.907474 TGAGATAGTTTGACCCTCCAACA 59.093 43.478 0.00 0.00 0.00 3.33
432 433 4.553330 TGAGATAGTTTGACCCTCCAAC 57.447 45.455 0.00 0.00 0.00 3.77
433 434 5.073144 ACTTTGAGATAGTTTGACCCTCCAA 59.927 40.000 0.00 0.00 0.00 3.53
434 435 4.597507 ACTTTGAGATAGTTTGACCCTCCA 59.402 41.667 0.00 0.00 0.00 3.86
435 436 5.167303 ACTTTGAGATAGTTTGACCCTCC 57.833 43.478 0.00 0.00 0.00 4.30
443 444 6.289064 ACTCGGTCAAACTTTGAGATAGTTT 58.711 36.000 4.36 0.00 44.38 2.66
444 445 5.855045 ACTCGGTCAAACTTTGAGATAGTT 58.145 37.500 4.36 0.00 41.01 2.24
445 446 5.470047 ACTCGGTCAAACTTTGAGATAGT 57.530 39.130 4.36 5.79 41.01 2.12
446 447 6.202954 ACAAACTCGGTCAAACTTTGAGATAG 59.797 38.462 4.36 5.24 41.01 2.08
447 448 6.018262 CACAAACTCGGTCAAACTTTGAGATA 60.018 38.462 4.36 0.00 41.01 1.98
448 449 4.881850 ACAAACTCGGTCAAACTTTGAGAT 59.118 37.500 4.36 0.00 41.01 2.75
449 450 4.094294 CACAAACTCGGTCAAACTTTGAGA 59.906 41.667 4.36 0.00 41.01 3.27
450 451 4.342772 CACAAACTCGGTCAAACTTTGAG 58.657 43.478 4.36 0.00 41.01 3.02
451 452 3.426963 GCACAAACTCGGTCAAACTTTGA 60.427 43.478 0.00 0.00 37.33 2.69
452 453 2.851824 GCACAAACTCGGTCAAACTTTG 59.148 45.455 0.00 0.00 0.00 2.77
453 454 2.490115 TGCACAAACTCGGTCAAACTTT 59.510 40.909 0.00 0.00 0.00 2.66
454 455 2.088423 TGCACAAACTCGGTCAAACTT 58.912 42.857 0.00 0.00 0.00 2.66
455 456 1.745232 TGCACAAACTCGGTCAAACT 58.255 45.000 0.00 0.00 0.00 2.66
456 457 2.553079 TTGCACAAACTCGGTCAAAC 57.447 45.000 0.00 0.00 0.00 2.93
457 458 3.577649 TTTTGCACAAACTCGGTCAAA 57.422 38.095 0.00 0.00 0.00 2.69
458 459 3.577649 TTTTTGCACAAACTCGGTCAA 57.422 38.095 0.00 0.00 0.00 3.18
459 460 3.791973 ATTTTTGCACAAACTCGGTCA 57.208 38.095 0.00 0.00 0.00 4.02
460 461 5.219633 ACATATTTTTGCACAAACTCGGTC 58.780 37.500 0.00 0.00 0.00 4.79
461 462 5.195001 ACATATTTTTGCACAAACTCGGT 57.805 34.783 0.00 0.00 0.00 4.69
462 463 5.218885 TGACATATTTTTGCACAAACTCGG 58.781 37.500 0.00 0.00 0.00 4.63
463 464 6.746104 TTGACATATTTTTGCACAAACTCG 57.254 33.333 0.00 0.00 0.00 4.18
464 465 7.011189 GCATTGACATATTTTTGCACAAACTC 58.989 34.615 0.00 0.00 0.00 3.01
465 466 6.707161 AGCATTGACATATTTTTGCACAAACT 59.293 30.769 0.00 0.00 32.66 2.66
466 467 6.890558 AGCATTGACATATTTTTGCACAAAC 58.109 32.000 0.00 0.00 32.66 2.93
467 468 7.493743 AAGCATTGACATATTTTTGCACAAA 57.506 28.000 0.00 0.00 32.66 2.83
485 486 8.246180 CAGATACCTATTTTGTTCACAAGCATT 58.754 33.333 0.00 0.00 37.15 3.56
486 487 7.611467 TCAGATACCTATTTTGTTCACAAGCAT 59.389 33.333 0.00 0.00 37.15 3.79
487 488 6.939730 TCAGATACCTATTTTGTTCACAAGCA 59.060 34.615 0.00 0.00 37.15 3.91
488 489 7.094805 TGTCAGATACCTATTTTGTTCACAAGC 60.095 37.037 0.00 0.00 37.15 4.01
489 490 8.322906 TGTCAGATACCTATTTTGTTCACAAG 57.677 34.615 0.00 0.00 37.15 3.16
490 491 8.154203 TCTGTCAGATACCTATTTTGTTCACAA 58.846 33.333 0.00 0.00 0.00 3.33
491 492 7.676004 TCTGTCAGATACCTATTTTGTTCACA 58.324 34.615 0.00 0.00 0.00 3.58
492 493 8.547967 TTCTGTCAGATACCTATTTTGTTCAC 57.452 34.615 2.68 0.00 0.00 3.18
493 494 9.567776 TTTTCTGTCAGATACCTATTTTGTTCA 57.432 29.630 2.68 0.00 0.00 3.18
620 621 9.074576 CCCTTAAAATAGTGTACTTCCAACTTT 57.925 33.333 0.00 0.00 0.00 2.66
621 622 8.222637 ACCCTTAAAATAGTGTACTTCCAACTT 58.777 33.333 0.00 0.00 0.00 2.66
622 623 7.664318 CACCCTTAAAATAGTGTACTTCCAACT 59.336 37.037 0.00 0.00 0.00 3.16
623 624 7.662669 TCACCCTTAAAATAGTGTACTTCCAAC 59.337 37.037 0.00 0.00 0.00 3.77
624 625 7.747690 TCACCCTTAAAATAGTGTACTTCCAA 58.252 34.615 0.00 0.00 0.00 3.53
625 626 7.319052 TCACCCTTAAAATAGTGTACTTCCA 57.681 36.000 0.00 0.00 0.00 3.53
626 627 7.336176 CCTTCACCCTTAAAATAGTGTACTTCC 59.664 40.741 0.00 0.00 0.00 3.46
627 628 7.336176 CCCTTCACCCTTAAAATAGTGTACTTC 59.664 40.741 0.00 0.00 0.00 3.01
628 629 7.017850 TCCCTTCACCCTTAAAATAGTGTACTT 59.982 37.037 0.00 0.00 0.00 2.24
629 630 6.502863 TCCCTTCACCCTTAAAATAGTGTACT 59.497 38.462 0.00 0.00 0.00 2.73
630 631 6.714278 TCCCTTCACCCTTAAAATAGTGTAC 58.286 40.000 0.00 0.00 0.00 2.90
631 632 6.502863 ACTCCCTTCACCCTTAAAATAGTGTA 59.497 38.462 0.00 0.00 0.00 2.90
632 633 5.312443 ACTCCCTTCACCCTTAAAATAGTGT 59.688 40.000 0.00 0.00 0.00 3.55
633 634 5.816682 ACTCCCTTCACCCTTAAAATAGTG 58.183 41.667 0.00 0.00 0.00 2.74
634 635 7.578458 TTACTCCCTTCACCCTTAAAATAGT 57.422 36.000 0.00 0.00 0.00 2.12
635 636 6.542735 GCTTACTCCCTTCACCCTTAAAATAG 59.457 42.308 0.00 0.00 0.00 1.73
636 637 6.420638 GCTTACTCCCTTCACCCTTAAAATA 58.579 40.000 0.00 0.00 0.00 1.40
637 638 5.262009 GCTTACTCCCTTCACCCTTAAAAT 58.738 41.667 0.00 0.00 0.00 1.82
638 639 4.507869 GGCTTACTCCCTTCACCCTTAAAA 60.508 45.833 0.00 0.00 0.00 1.52
639 640 3.009805 GGCTTACTCCCTTCACCCTTAAA 59.990 47.826 0.00 0.00 0.00 1.52
640 641 2.574824 GGCTTACTCCCTTCACCCTTAA 59.425 50.000 0.00 0.00 0.00 1.85
641 642 2.193993 GGCTTACTCCCTTCACCCTTA 58.806 52.381 0.00 0.00 0.00 2.69
642 643 0.992695 GGCTTACTCCCTTCACCCTT 59.007 55.000 0.00 0.00 0.00 3.95
643 644 0.178873 TGGCTTACTCCCTTCACCCT 60.179 55.000 0.00 0.00 0.00 4.34
644 645 0.696501 TTGGCTTACTCCCTTCACCC 59.303 55.000 0.00 0.00 0.00 4.61
645 646 2.579410 TTTGGCTTACTCCCTTCACC 57.421 50.000 0.00 0.00 0.00 4.02
646 647 6.458342 CGATATTTTTGGCTTACTCCCTTCAC 60.458 42.308 0.00 0.00 0.00 3.18
647 648 5.588648 CGATATTTTTGGCTTACTCCCTTCA 59.411 40.000 0.00 0.00 0.00 3.02
648 649 5.820947 TCGATATTTTTGGCTTACTCCCTTC 59.179 40.000 0.00 0.00 0.00 3.46
649 650 5.751586 TCGATATTTTTGGCTTACTCCCTT 58.248 37.500 0.00 0.00 0.00 3.95
650 651 5.367945 TCGATATTTTTGGCTTACTCCCT 57.632 39.130 0.00 0.00 0.00 4.20
651 652 5.505819 GCTTCGATATTTTTGGCTTACTCCC 60.506 44.000 0.00 0.00 0.00 4.30
652 653 5.297029 AGCTTCGATATTTTTGGCTTACTCC 59.703 40.000 0.00 0.00 0.00 3.85
653 654 6.258947 AGAGCTTCGATATTTTTGGCTTACTC 59.741 38.462 0.00 0.00 0.00 2.59
654 655 6.116126 AGAGCTTCGATATTTTTGGCTTACT 58.884 36.000 0.00 0.00 0.00 2.24
655 656 6.364945 AGAGCTTCGATATTTTTGGCTTAC 57.635 37.500 0.00 0.00 0.00 2.34
656 657 5.527582 GGAGAGCTTCGATATTTTTGGCTTA 59.472 40.000 0.00 0.00 0.00 3.09
657 658 4.336713 GGAGAGCTTCGATATTTTTGGCTT 59.663 41.667 0.00 0.00 0.00 4.35
698 699 6.734137 TCACGATTTCATTTTGTTAAGCTGT 58.266 32.000 0.00 0.00 0.00 4.40
699 700 7.358352 GGTTCACGATTTCATTTTGTTAAGCTG 60.358 37.037 0.00 0.00 0.00 4.24
728 731 0.254178 TTGAGCCAAGATGAGGGAGC 59.746 55.000 0.00 0.00 0.00 4.70
737 740 3.351740 TGTTTGACAGTTTGAGCCAAGA 58.648 40.909 0.00 0.00 0.00 3.02
850 853 6.069673 TGGGATCTTTGCTTCCAAGATACTAA 60.070 38.462 5.14 0.00 33.43 2.24
906 909 0.324460 GGAGAGGAGAAGAACCCGGA 60.324 60.000 0.73 0.00 0.00 5.14
911 914 1.491668 GGGGAGGAGAGGAGAAGAAC 58.508 60.000 0.00 0.00 0.00 3.01
966 969 1.726791 CAAACAGCTAGCTGGTACACG 59.273 52.381 40.06 23.49 44.18 4.49
1029 1032 1.986757 ATCGTGCTCCTCCTGCTGT 60.987 57.895 0.00 0.00 0.00 4.40
1153 1156 2.250741 TAGCTGGCATGGCAACGCTA 62.251 55.000 28.49 28.49 42.51 4.26
1157 1160 1.379044 AGGTAGCTGGCATGGCAAC 60.379 57.895 23.47 18.88 0.00 4.17
1199 1202 7.214381 AGTGTTCAGTGTAAAACAGCATACTA 58.786 34.615 0.00 0.00 36.14 1.82
1204 1207 5.424757 AGTAGTGTTCAGTGTAAAACAGCA 58.575 37.500 0.00 0.00 36.14 4.41
1206 1209 8.644318 ACTTAGTAGTGTTCAGTGTAAAACAG 57.356 34.615 0.00 0.00 36.14 3.16
1207 1210 9.740239 CTACTTAGTAGTGTTCAGTGTAAAACA 57.260 33.333 11.01 0.00 35.78 2.83
1215 1219 6.883756 GGTACTCCTACTTAGTAGTGTTCAGT 59.116 42.308 17.00 12.22 34.62 3.41
1239 1243 1.470285 CGTATTGTCGTGTACCCCTGG 60.470 57.143 0.00 0.00 0.00 4.45
1253 1377 7.751348 TGGTTGAAATTTACCGAAATCGTATTG 59.249 33.333 5.80 0.00 37.23 1.90
1254 1378 7.818642 TGGTTGAAATTTACCGAAATCGTATT 58.181 30.769 5.80 0.00 37.23 1.89
1256 1380 6.798315 TGGTTGAAATTTACCGAAATCGTA 57.202 33.333 5.80 0.00 37.23 3.43
1258 1382 6.146898 ACTTGGTTGAAATTTACCGAAATCG 58.853 36.000 5.80 0.00 37.23 3.34
1268 1393 6.054295 TGCTTGCAATACTTGGTTGAAATTT 58.946 32.000 0.00 0.00 0.00 1.82
1277 1402 8.949177 TGTATGATATATGCTTGCAATACTTGG 58.051 33.333 0.00 0.00 0.00 3.61
1338 1464 7.716998 CCATGGATTCTTACTACTGCAAACTAT 59.283 37.037 5.56 0.00 0.00 2.12
1339 1465 7.047891 CCATGGATTCTTACTACTGCAAACTA 58.952 38.462 5.56 0.00 0.00 2.24
1396 1523 0.610174 TGTCCAAGCTCTAGCCACAG 59.390 55.000 0.00 0.00 43.38 3.66
1397 1524 1.002430 CTTGTCCAAGCTCTAGCCACA 59.998 52.381 0.00 0.00 43.38 4.17
1398 1525 1.677217 CCTTGTCCAAGCTCTAGCCAC 60.677 57.143 1.40 0.00 43.38 5.01
1399 1526 0.615331 CCTTGTCCAAGCTCTAGCCA 59.385 55.000 1.40 0.00 43.38 4.75
1414 1541 3.935203 ACTATCATGACAAAGACGCCTTG 59.065 43.478 0.00 0.00 31.91 3.61
1421 1548 8.969260 ATTAGCAATGACTATCATGACAAAGA 57.031 30.769 0.00 0.00 37.15 2.52
1422 1549 9.053840 AGATTAGCAATGACTATCATGACAAAG 57.946 33.333 0.00 0.00 37.15 2.77
1452 1594 7.538678 GTGCCTTTCATCTTACAACAATAACTG 59.461 37.037 0.00 0.00 0.00 3.16
1453 1595 7.448469 AGTGCCTTTCATCTTACAACAATAACT 59.552 33.333 0.00 0.00 0.00 2.24
1469 1611 1.001974 ACGCTGATACAGTGCCTTTCA 59.998 47.619 11.42 0.00 44.75 2.69
1475 1617 3.448686 AGTCAATACGCTGATACAGTGC 58.551 45.455 11.42 0.00 44.75 4.40
1478 1620 5.352284 AGGAAAGTCAATACGCTGATACAG 58.648 41.667 0.00 0.00 34.12 2.74
1499 1641 6.446781 ACTGTGCATCATTTTCATAGAAGG 57.553 37.500 0.00 0.00 0.00 3.46
1558 1703 4.461081 TCATCGTACAAATCCCCCTTTTTG 59.539 41.667 0.00 0.00 38.49 2.44
1564 1709 5.348164 CAAAATTCATCGTACAAATCCCCC 58.652 41.667 0.00 0.00 0.00 5.40
1568 1713 7.795431 TTCAGCAAAATTCATCGTACAAATC 57.205 32.000 0.00 0.00 0.00 2.17
1617 1762 7.884877 TGTTTCAATAATCACTGTCCAATCTCT 59.115 33.333 0.00 0.00 0.00 3.10
1661 1812 3.446161 TCGAACGTCTCATTCCCTGTAAT 59.554 43.478 0.00 0.00 0.00 1.89
1893 2044 2.667418 CAGTGAGGGTGAGCAGGG 59.333 66.667 0.00 0.00 0.00 4.45
1914 2065 2.607750 GGTGGAGGGAGTGGAGCA 60.608 66.667 0.00 0.00 0.00 4.26
2200 2358 3.775654 GGCACTGCGAGGCCTAGT 61.776 66.667 14.88 7.84 46.74 2.57
2239 2397 2.426522 CCCATGAAGAAGAGAACGCAA 58.573 47.619 0.00 0.00 0.00 4.85
2494 2655 2.740826 CACGGGTTCGCCGATGTT 60.741 61.111 6.97 0.00 40.63 2.71
2576 2744 5.096169 CACGAAGTAGACAATACCTGACAG 58.904 45.833 0.00 0.00 41.61 3.51
2671 2839 1.222936 CTGCGGGATCTGGAAGCTT 59.777 57.895 0.00 0.00 0.00 3.74
2719 2887 1.142748 CGGGATCCAGACTGTGAGC 59.857 63.158 15.23 1.46 0.00 4.26
2830 2998 1.883732 CATCGTCACCACGGAGAGT 59.116 57.895 0.00 0.00 46.70 3.24
2962 3136 5.250982 TGTCGGTAGTAGAACTCAATCAGA 58.749 41.667 0.00 0.00 0.00 3.27
3058 3232 1.750018 CGCAATCACCATGAGCCCA 60.750 57.895 0.00 0.00 0.00 5.36
3139 3313 1.027815 AGAATAGGTCCACCCTCCCT 58.972 55.000 0.00 0.00 44.81 4.20
3300 3474 1.512156 AAACTAAACCGGCACCGCAG 61.512 55.000 0.00 0.47 38.24 5.18
3365 3539 9.586732 TCCCGAGGATCAAAAATCATATATTTT 57.413 29.630 0.00 0.00 33.12 1.82
3366 3540 9.586732 TTCCCGAGGATCAAAAATCATATATTT 57.413 29.630 0.00 0.00 33.17 1.40
3367 3541 9.759473 ATTCCCGAGGATCAAAAATCATATATT 57.241 29.630 0.00 0.00 33.17 1.28
3370 3544 7.233632 TGATTCCCGAGGATCAAAAATCATAT 58.766 34.615 0.00 0.00 33.53 1.78
3378 3552 3.712016 TGTTGATTCCCGAGGATCAAA 57.288 42.857 1.67 0.00 34.07 2.69
3387 3561 0.680921 AGGGTGCATGTTGATTCCCG 60.681 55.000 0.00 0.00 39.78 5.14
3432 3612 5.412904 ACATATCTCATGCATGCTTGATCAG 59.587 40.000 29.88 20.77 31.27 2.90
3448 3628 3.928992 CACTCACACCACACACATATCTC 59.071 47.826 0.00 0.00 0.00 2.75
3452 3632 2.432510 TCACACTCACACCACACACATA 59.567 45.455 0.00 0.00 0.00 2.29
3454 3634 0.610687 TCACACTCACACCACACACA 59.389 50.000 0.00 0.00 0.00 3.72
3455 3635 1.599071 CATCACACTCACACCACACAC 59.401 52.381 0.00 0.00 0.00 3.82
3464 3644 6.146184 CCGTATTATTCCATCATCACACTCAC 59.854 42.308 0.00 0.00 0.00 3.51
3476 3656 3.758554 GCATTCCTGCCGTATTATTCCAT 59.241 43.478 0.00 0.00 42.88 3.41
3478 3658 3.831715 GCATTCCTGCCGTATTATTCC 57.168 47.619 0.00 0.00 42.88 3.01
3490 3670 2.635714 TGCTACTCACATGCATTCCTG 58.364 47.619 0.00 0.00 0.00 3.86
3502 3682 1.536766 GTGCTGTGCATTTGCTACTCA 59.463 47.619 3.94 1.84 41.91 3.41
3511 3691 0.316204 GCTTTGAGGTGCTGTGCATT 59.684 50.000 0.00 0.00 41.91 3.56
3541 3721 1.805943 TGTGCGTGAATCAACATCAGG 59.194 47.619 0.00 0.00 36.14 3.86
3583 3763 2.950874 TCCATGATGGATGCAACATGCA 60.951 45.455 25.66 13.48 46.57 3.96
3584 3764 1.684450 TCCATGATGGATGCAACATGC 59.316 47.619 25.66 0.00 42.67 4.06
3628 3808 2.493414 AGTACTAGCCAGTCGTCACT 57.507 50.000 0.00 0.00 36.14 3.41
3629 3809 2.159407 GGAAGTACTAGCCAGTCGTCAC 60.159 54.545 9.26 0.00 36.14 3.67
3658 3838 9.606631 GGTTGAGAATAGAAGTTGATGAATACT 57.393 33.333 0.00 0.00 0.00 2.12
3673 3853 9.113838 AGCACATACAAAATAGGTTGAGAATAG 57.886 33.333 0.00 0.00 32.59 1.73
3676 3856 7.759489 AAGCACATACAAAATAGGTTGAGAA 57.241 32.000 0.00 0.00 32.59 2.87
3678 3858 7.148755 GCAAAAGCACATACAAAATAGGTTGAG 60.149 37.037 0.00 0.00 32.59 3.02
3687 3867 5.645497 ACCAAAAGCAAAAGCACATACAAAA 59.355 32.000 0.00 0.00 0.00 2.44
3691 6052 4.209080 GTGACCAAAAGCAAAAGCACATAC 59.791 41.667 0.00 0.00 0.00 2.39
3692 6053 4.367450 GTGACCAAAAGCAAAAGCACATA 58.633 39.130 0.00 0.00 0.00 2.29
3696 6057 1.203523 ACGTGACCAAAAGCAAAAGCA 59.796 42.857 0.00 0.00 0.00 3.91
3712 6073 0.876777 TTGACCGGCTGTTGTACGTG 60.877 55.000 0.00 0.00 0.00 4.49
3714 6075 1.924524 CTATTGACCGGCTGTTGTACG 59.075 52.381 0.00 0.00 0.00 3.67
3721 6082 1.338200 GGCCTATCTATTGACCGGCTG 60.338 57.143 0.00 0.00 39.43 4.85
3724 6085 3.703001 ATTGGCCTATCTATTGACCGG 57.297 47.619 3.32 0.00 0.00 5.28
3756 6117 0.887836 CATCATGATCTGGGCCACGG 60.888 60.000 0.00 0.00 0.00 4.94
3757 6118 1.512996 GCATCATGATCTGGGCCACG 61.513 60.000 0.00 0.00 0.00 4.94
3778 6319 6.258727 ACATGCTACGATCACCAAAGAATTAG 59.741 38.462 0.00 0.00 0.00 1.73
3794 6335 5.038683 TCATACGAGGTTAAACATGCTACG 58.961 41.667 0.00 0.00 0.00 3.51
3838 6379 2.760385 GGCCCTAGTCAGCTCCGT 60.760 66.667 0.00 0.00 0.00 4.69
3868 6409 7.301420 ACAAGGAGAGTGATATGAGGAATAGA 58.699 38.462 0.00 0.00 0.00 1.98
3873 6414 3.885901 CGACAAGGAGAGTGATATGAGGA 59.114 47.826 0.00 0.00 0.00 3.71
3878 6432 6.174049 TCGATATCGACAAGGAGAGTGATAT 58.826 40.000 23.48 0.00 44.22 1.63
4015 6570 1.091771 CGATGGAGGTGGACATGCAC 61.092 60.000 0.00 0.00 29.39 4.57
4034 6589 9.967346 TCAGCTAATACTTCATACTTGTATGTC 57.033 33.333 17.14 2.04 0.00 3.06
4070 6625 1.165270 GCATCAAAACACCCTACGCT 58.835 50.000 0.00 0.00 0.00 5.07
4183 7043 6.603940 AGGCAATTTTTGGTGTACATGTAT 57.396 33.333 9.18 0.00 0.00 2.29
4195 7055 4.168760 CCGAGCTCTAAAGGCAATTTTTG 58.831 43.478 12.85 0.00 32.01 2.44
4196 7056 4.440839 CCGAGCTCTAAAGGCAATTTTT 57.559 40.909 12.85 0.00 32.01 1.94
4204 7064 1.330655 TGGAGGCCGAGCTCTAAAGG 61.331 60.000 12.85 6.58 0.00 3.11
4205 7065 0.755686 ATGGAGGCCGAGCTCTAAAG 59.244 55.000 12.85 0.00 0.00 1.85
4206 7066 1.964223 CTATGGAGGCCGAGCTCTAAA 59.036 52.381 12.85 0.00 0.00 1.85
4207 7067 1.145119 TCTATGGAGGCCGAGCTCTAA 59.855 52.381 12.85 0.00 0.00 2.10
4208 7068 0.771755 TCTATGGAGGCCGAGCTCTA 59.228 55.000 12.85 0.00 0.00 2.43
4209 7069 0.539438 CTCTATGGAGGCCGAGCTCT 60.539 60.000 12.85 0.00 36.03 4.09
4210 7070 1.963679 CTCTATGGAGGCCGAGCTC 59.036 63.158 2.73 2.73 36.03 4.09
4211 7071 4.189539 CTCTATGGAGGCCGAGCT 57.810 61.111 0.00 0.00 36.03 4.09
4219 7079 4.671831 TGAATCTAGAGGCCTCTATGGAG 58.328 47.826 36.90 28.33 40.97 3.86
4220 7080 4.749048 TGAATCTAGAGGCCTCTATGGA 57.251 45.455 36.90 30.91 40.97 3.41
4221 7081 5.815233 TTTGAATCTAGAGGCCTCTATGG 57.185 43.478 36.90 27.39 40.97 2.74
4222 7082 7.935755 TGAAATTTGAATCTAGAGGCCTCTATG 59.064 37.037 36.90 29.06 40.97 2.23
4223 7083 8.038862 TGAAATTTGAATCTAGAGGCCTCTAT 57.961 34.615 36.90 25.39 40.97 1.98
4224 7084 7.437713 TGAAATTTGAATCTAGAGGCCTCTA 57.562 36.000 35.03 35.03 40.93 2.43
4225 7085 6.319048 TGAAATTTGAATCTAGAGGCCTCT 57.681 37.500 36.62 36.62 43.40 3.69
4226 7086 7.396540 TTTGAAATTTGAATCTAGAGGCCTC 57.603 36.000 26.22 26.22 0.00 4.70
4227 7087 7.968014 ATTTGAAATTTGAATCTAGAGGCCT 57.032 32.000 3.86 3.86 0.00 5.19
4228 7088 9.091784 GAAATTTGAAATTTGAATCTAGAGGCC 57.908 33.333 19.47 0.00 0.00 5.19
4229 7089 9.643693 TGAAATTTGAAATTTGAATCTAGAGGC 57.356 29.630 19.47 2.72 0.00 4.70
4290 7150 8.677300 GCCTTCATGTGTATCTTTATTTCTTCA 58.323 33.333 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.