Multiple sequence alignment - TraesCS2B01G056700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G056700 chr2B 100.000 2626 0 0 1 2626 27635209 27637834 0.000000e+00 4850
1 TraesCS2B01G056700 chr2B 92.045 88 7 0 1540 1627 27031850 27031937 9.870000e-25 124
2 TraesCS2B01G056700 chr2A 92.915 1722 106 11 4 1713 17609432 17611149 0.000000e+00 2490
3 TraesCS2B01G056700 chr2A 77.947 789 128 27 856 1627 17133275 17134034 3.990000e-123 451
4 TraesCS2B01G056700 chr2A 91.693 313 15 5 2107 2409 17612970 17613281 8.690000e-115 424
5 TraesCS2B01G056700 chr2A 93.031 287 15 3 1699 1983 17611169 17611452 5.230000e-112 414
6 TraesCS2B01G056700 chr2D 90.505 1485 90 14 967 2409 15583148 15584623 0.000000e+00 1914
7 TraesCS2B01G056700 chr2D 95.130 575 25 3 3 576 15529255 15529827 0.000000e+00 904
8 TraesCS2B01G056700 chr2D 89.589 365 21 4 585 943 15582798 15583151 5.160000e-122 448
9 TraesCS2B01G056700 chr2D 77.279 779 126 31 867 1627 15015730 15016475 6.760000e-111 411


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G056700 chr2B 27635209 27637834 2625 False 4850.000000 4850 100.000000 1 2626 1 chr2B.!!$F2 2625
1 TraesCS2B01G056700 chr2A 17609432 17613281 3849 False 1109.333333 2490 92.546333 4 2409 3 chr2A.!!$F2 2405
2 TraesCS2B01G056700 chr2A 17133275 17134034 759 False 451.000000 451 77.947000 856 1627 1 chr2A.!!$F1 771
3 TraesCS2B01G056700 chr2D 15582798 15584623 1825 False 1181.000000 1914 90.047000 585 2409 2 chr2D.!!$F3 1824
4 TraesCS2B01G056700 chr2D 15529255 15529827 572 False 904.000000 904 95.130000 3 576 1 chr2D.!!$F2 573
5 TraesCS2B01G056700 chr2D 15015730 15016475 745 False 411.000000 411 77.279000 867 1627 1 chr2D.!!$F1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 273 0.381801 CAATGTATGAACTGGCCGCC 59.618 55.0 1.04 1.04 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 1895 0.673644 GGGACCAATCACTGACACCG 60.674 60.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.737290 CGAACAAATTTGAATCGTATCCACC 59.263 40.000 27.38 5.96 36.80 4.61
83 84 4.649674 TGGAGATGCCCTAACTTACTGTAG 59.350 45.833 0.00 0.00 34.97 2.74
157 159 5.494390 AGTTCGTTAACTAAGGGAATGGT 57.506 39.130 3.71 0.00 44.26 3.55
180 182 1.304952 CAAATCCCAGGGGCGGTTA 59.695 57.895 5.33 0.00 34.68 2.85
197 199 4.559906 GCGGTTAACAAATTAAACCAGCCT 60.560 41.667 8.10 0.00 34.92 4.58
264 266 1.210478 AGCCGGCTCAATGTATGAACT 59.790 47.619 27.08 0.00 37.67 3.01
271 273 0.381801 CAATGTATGAACTGGCCGCC 59.618 55.000 1.04 1.04 0.00 6.13
339 341 4.038642 GGTCACTTATTTCTTTTGGCCACA 59.961 41.667 3.88 0.00 31.90 4.17
359 361 2.875933 CACTCTTTTTGTAACCGGCTCA 59.124 45.455 0.00 0.00 0.00 4.26
402 404 4.093850 GGTTTCGCGATAACTGGTTACAAT 59.906 41.667 23.54 0.00 0.00 2.71
429 431 3.506067 GGTCCAAAAATGTCATCTTCGGT 59.494 43.478 0.00 0.00 0.00 4.69
515 517 4.137849 CGAATGCTCGCATATGTTGAAT 57.862 40.909 4.63 0.00 38.45 2.57
549 551 2.753452 TCTCCGACGCTATTCTTTCAGT 59.247 45.455 0.00 0.00 0.00 3.41
556 558 6.861572 CCGACGCTATTCTTTCAGTGATATAA 59.138 38.462 0.00 0.00 0.00 0.98
576 578 1.831106 ACATGCCCGTCAACTATGAGA 59.169 47.619 0.00 0.00 35.88 3.27
579 581 3.179443 TGCCCGTCAACTATGAGATTC 57.821 47.619 0.00 0.00 35.88 2.52
614 616 5.352569 CGTCAATCTTAAGATCTGCTGGTTT 59.647 40.000 18.19 0.00 32.75 3.27
622 624 4.899352 AGATCTGCTGGTTTAGTGTCTT 57.101 40.909 0.00 0.00 0.00 3.01
633 635 5.071250 TGGTTTAGTGTCTTGGAAGAGCTAA 59.929 40.000 0.00 8.28 35.32 3.09
682 684 4.233789 GCACTGACGGATTAATGCAAAAA 58.766 39.130 7.78 0.00 33.27 1.94
690 692 3.517500 GGATTAATGCAAAAAGGGGTCCA 59.482 43.478 1.54 0.00 0.00 4.02
697 699 3.332485 TGCAAAAAGGGGTCCATAGTACT 59.668 43.478 0.00 0.00 0.00 2.73
727 729 0.944311 CACCACGAACGAACCTCTGG 60.944 60.000 0.14 0.00 0.00 3.86
737 739 2.907042 ACGAACCTCTGGAAGAAGGAAT 59.093 45.455 0.00 0.00 46.34 3.01
862 870 1.762708 ACAACCCGGCCTATTGAATG 58.237 50.000 15.16 2.21 0.00 2.67
929 937 0.750911 GCAAGCAGCCATAGCCTTCT 60.751 55.000 0.00 0.00 41.25 2.85
934 942 1.881498 GCAGCCATAGCCTTCTCATCC 60.881 57.143 0.00 0.00 41.25 3.51
982 1022 0.738975 CCAACTAGCGACCGATCTCA 59.261 55.000 0.00 0.00 0.00 3.27
1026 1066 2.000048 ACATATGGGGTGAAGGTTGGT 59.000 47.619 7.80 0.00 0.00 3.67
1076 1117 3.135225 ACGACATCACCGAATTGACAAA 58.865 40.909 0.00 0.00 0.00 2.83
1235 1276 0.393132 GGCCAGAAGAGCAAGGTACC 60.393 60.000 2.73 2.73 0.00 3.34
1257 1299 5.012768 ACCCCCTCCACGTCAAAATATATAG 59.987 44.000 0.00 0.00 0.00 1.31
1314 1362 7.831753 TCTCTTCTTGGTGATAACTAACTCTG 58.168 38.462 0.00 0.00 0.00 3.35
1325 1376 7.494952 GTGATAACTAACTCTGGGTAAATGGAC 59.505 40.741 0.00 0.00 0.00 4.02
1329 1380 6.415573 ACTAACTCTGGGTAAATGGACAATC 58.584 40.000 0.00 0.00 0.00 2.67
1334 1388 5.500234 TCTGGGTAAATGGACAATCTCTTG 58.500 41.667 0.00 0.00 38.39 3.02
1337 1391 7.127186 TCTGGGTAAATGGACAATCTCTTGATA 59.873 37.037 0.00 0.00 36.20 2.15
1363 1419 9.498176 ACATGTTTAACCGTTAGTTATTTCTCT 57.502 29.630 0.00 0.00 40.62 3.10
1418 1474 2.224217 CGTGCGTATCACCGAGCTG 61.224 63.158 0.00 0.00 42.69 4.24
1421 1477 1.313091 TGCGTATCACCGAGCTGTCT 61.313 55.000 0.00 0.00 0.00 3.41
1428 1484 1.304547 ACCGAGCTGTCTGGCTACT 60.305 57.895 0.00 0.00 43.20 2.57
1460 1516 0.687354 ACATCACCTCGCTCACCTTT 59.313 50.000 0.00 0.00 0.00 3.11
1544 1600 2.127232 CACCCATTTCCGCATCCCC 61.127 63.158 0.00 0.00 0.00 4.81
1665 1721 8.802267 TGTATGATCTACATATGATTCGGTTCA 58.198 33.333 10.38 3.71 42.42 3.18
1707 1763 4.585879 AGAAGGTTACTTTGTGTGTGTGT 58.414 39.130 0.00 0.00 36.97 3.72
1713 1769 1.133363 CTTTGTGTGTGTGTGTGCGC 61.133 55.000 0.00 0.00 0.00 6.09
1788 1884 2.251642 GGTTGCTCTCCGTGCGTTT 61.252 57.895 0.00 0.00 0.00 3.60
1794 1890 1.463444 GCTCTCCGTGCGTTTATGTTT 59.537 47.619 0.00 0.00 0.00 2.83
1799 1895 4.327898 TCTCCGTGCGTTTATGTTTATGTC 59.672 41.667 0.00 0.00 0.00 3.06
1805 1901 4.143073 TGCGTTTATGTTTATGTCGGTGTC 60.143 41.667 0.00 0.00 0.00 3.67
1882 1978 7.064134 TGGTCAAGCATGTAATAGTAAGTTTCG 59.936 37.037 0.00 0.00 0.00 3.46
1907 2003 7.057566 CGAAACTTAAGTAATTTCCGAACAACG 59.942 37.037 8.92 0.00 42.18 4.10
1945 2041 4.747108 CGAGACGCAGATTTAATCTTGGAT 59.253 41.667 4.51 0.00 37.58 3.41
1957 2053 8.970691 ATTTAATCTTGGATGCGCATATTTAC 57.029 30.769 25.40 10.40 0.00 2.01
1973 2069 7.496747 GCATATTTACTCTCTTTCTCCTCTGT 58.503 38.462 0.00 0.00 0.00 3.41
1983 2079 7.967908 TCTCTTTCTCCTCTGTGATTTTAAGT 58.032 34.615 0.00 0.00 0.00 2.24
1986 2082 8.840321 TCTTTCTCCTCTGTGATTTTAAGTTTG 58.160 33.333 0.00 0.00 0.00 2.93
1989 2085 8.833231 TCTCCTCTGTGATTTTAAGTTTGTAG 57.167 34.615 0.00 0.00 0.00 2.74
2046 3462 4.588528 AGCAAACAAGTAACCATGACCAAT 59.411 37.500 0.00 0.00 0.00 3.16
2095 3511 8.845227 TCTATGAGCTCAGCTAACATATATAGC 58.155 37.037 22.96 10.35 44.85 2.97
2129 3650 8.143193 TCATAGTTACCAACGTTCTTCAGTTAA 58.857 33.333 0.00 0.00 36.23 2.01
2150 3674 9.813446 AGTTAATTAACTATAAGACCGGACAAG 57.187 33.333 25.85 0.98 44.18 3.16
2277 3802 7.169645 CCAAATGTTGTAAGAATTCCTTGTGTG 59.830 37.037 0.65 0.00 36.34 3.82
2314 3841 0.388006 CAACCGATCCGCCAAAAACC 60.388 55.000 0.00 0.00 0.00 3.27
2326 3858 0.310854 CAAAAACCAGAGGACGTGCC 59.689 55.000 2.38 0.00 0.00 5.01
2373 3905 5.837437 AGAACAAGAGAAGATATAGCACCG 58.163 41.667 0.00 0.00 0.00 4.94
2375 3907 3.384789 ACAAGAGAAGATATAGCACCGCA 59.615 43.478 0.00 0.00 0.00 5.69
2395 3927 7.009174 CACCGCAACAAGTTTTTATATTCCATC 59.991 37.037 0.00 0.00 0.00 3.51
2413 3945 8.783660 ATTCCATCTGAGAATAGGTAAGTACA 57.216 34.615 0.00 0.00 32.20 2.90
2414 3946 7.825331 TCCATCTGAGAATAGGTAAGTACAG 57.175 40.000 0.00 0.00 0.00 2.74
2415 3947 6.778069 TCCATCTGAGAATAGGTAAGTACAGG 59.222 42.308 0.00 0.00 0.00 4.00
2416 3948 6.778069 CCATCTGAGAATAGGTAAGTACAGGA 59.222 42.308 0.00 0.00 0.00 3.86
2417 3949 7.040062 CCATCTGAGAATAGGTAAGTACAGGAG 60.040 44.444 0.00 0.00 0.00 3.69
2418 3950 5.828859 TCTGAGAATAGGTAAGTACAGGAGC 59.171 44.000 0.00 0.00 0.00 4.70
2419 3951 5.516044 TGAGAATAGGTAAGTACAGGAGCA 58.484 41.667 0.00 0.00 0.00 4.26
2420 3952 6.136857 TGAGAATAGGTAAGTACAGGAGCAT 58.863 40.000 0.00 0.00 0.00 3.79
2421 3953 7.295340 TGAGAATAGGTAAGTACAGGAGCATA 58.705 38.462 0.00 0.00 0.00 3.14
2422 3954 7.950684 TGAGAATAGGTAAGTACAGGAGCATAT 59.049 37.037 0.00 0.00 0.00 1.78
2423 3955 8.356000 AGAATAGGTAAGTACAGGAGCATATC 57.644 38.462 0.00 0.00 0.00 1.63
2440 3972 8.479313 GAGCATATCCACATTATTCGTTATCA 57.521 34.615 0.00 0.00 0.00 2.15
2441 3973 8.484641 AGCATATCCACATTATTCGTTATCAG 57.515 34.615 0.00 0.00 0.00 2.90
2442 3974 7.550551 AGCATATCCACATTATTCGTTATCAGG 59.449 37.037 0.00 0.00 0.00 3.86
2443 3975 7.549134 GCATATCCACATTATTCGTTATCAGGA 59.451 37.037 0.00 0.00 0.00 3.86
2444 3976 9.605275 CATATCCACATTATTCGTTATCAGGAT 57.395 33.333 0.00 0.00 36.27 3.24
2445 3977 7.912056 ATCCACATTATTCGTTATCAGGATG 57.088 36.000 0.00 0.00 31.42 3.51
2446 3978 5.700832 TCCACATTATTCGTTATCAGGATGC 59.299 40.000 0.00 0.00 34.76 3.91
2447 3979 5.469760 CCACATTATTCGTTATCAGGATGCA 59.530 40.000 0.00 0.00 34.76 3.96
2448 3980 6.347969 CCACATTATTCGTTATCAGGATGCAG 60.348 42.308 0.00 0.00 34.76 4.41
2449 3981 6.424812 CACATTATTCGTTATCAGGATGCAGA 59.575 38.462 0.00 0.00 34.76 4.26
2450 3982 7.118825 CACATTATTCGTTATCAGGATGCAGAT 59.881 37.037 0.00 0.00 34.76 2.90
2451 3983 7.663081 ACATTATTCGTTATCAGGATGCAGATT 59.337 33.333 0.00 0.00 34.76 2.40
2452 3984 5.936686 ATTCGTTATCAGGATGCAGATTG 57.063 39.130 0.00 0.00 34.76 2.67
2453 3985 4.406648 TCGTTATCAGGATGCAGATTGT 57.593 40.909 0.00 0.00 34.76 2.71
2454 3986 4.371786 TCGTTATCAGGATGCAGATTGTC 58.628 43.478 0.00 0.00 34.76 3.18
2455 3987 3.496130 CGTTATCAGGATGCAGATTGTCC 59.504 47.826 0.00 0.00 34.76 4.02
2456 3988 4.454678 GTTATCAGGATGCAGATTGTCCA 58.545 43.478 6.09 0.00 34.76 4.02
2457 3989 3.878237 ATCAGGATGCAGATTGTCCAT 57.122 42.857 6.09 0.00 34.76 3.41
2458 3990 3.657398 TCAGGATGCAGATTGTCCATT 57.343 42.857 6.09 0.00 34.76 3.16
2459 3991 3.972133 TCAGGATGCAGATTGTCCATTT 58.028 40.909 6.09 0.00 34.76 2.32
2460 3992 4.346730 TCAGGATGCAGATTGTCCATTTT 58.653 39.130 6.09 0.00 34.76 1.82
2461 3993 4.400251 TCAGGATGCAGATTGTCCATTTTC 59.600 41.667 6.09 0.00 34.76 2.29
2462 3994 4.158949 CAGGATGCAGATTGTCCATTTTCA 59.841 41.667 6.09 0.00 34.42 2.69
2463 3995 4.960469 AGGATGCAGATTGTCCATTTTCAT 59.040 37.500 6.09 0.00 34.42 2.57
2464 3996 6.040054 CAGGATGCAGATTGTCCATTTTCATA 59.960 38.462 6.09 0.00 34.42 2.15
2465 3997 6.781014 AGGATGCAGATTGTCCATTTTCATAT 59.219 34.615 6.09 0.00 34.42 1.78
2466 3998 7.039923 AGGATGCAGATTGTCCATTTTCATATC 60.040 37.037 6.09 0.00 34.42 1.63
2467 3999 6.395426 TGCAGATTGTCCATTTTCATATCC 57.605 37.500 0.00 0.00 0.00 2.59
2468 4000 5.892686 TGCAGATTGTCCATTTTCATATCCA 59.107 36.000 0.00 0.00 0.00 3.41
2469 4001 6.183360 TGCAGATTGTCCATTTTCATATCCAC 60.183 38.462 0.00 0.00 0.00 4.02
2470 4002 6.183360 GCAGATTGTCCATTTTCATATCCACA 60.183 38.462 0.00 0.00 0.00 4.17
2471 4003 7.470981 GCAGATTGTCCATTTTCATATCCACAT 60.471 37.037 0.00 0.00 0.00 3.21
2472 4004 8.418662 CAGATTGTCCATTTTCATATCCACATT 58.581 33.333 0.00 0.00 0.00 2.71
2473 4005 9.645128 AGATTGTCCATTTTCATATCCACATTA 57.355 29.630 0.00 0.00 0.00 1.90
2515 4047 8.974060 AAATAAGGATATTATTGTCACGTGGT 57.026 30.769 17.00 2.37 31.44 4.16
2517 4049 9.706691 AATAAGGATATTATTGTCACGTGGTAG 57.293 33.333 17.00 0.00 29.85 3.18
2518 4050 6.097915 AGGATATTATTGTCACGTGGTAGG 57.902 41.667 17.00 0.00 0.00 3.18
2519 4051 5.011738 AGGATATTATTGTCACGTGGTAGGG 59.988 44.000 17.00 0.00 0.00 3.53
2520 4052 5.221581 GGATATTATTGTCACGTGGTAGGGT 60.222 44.000 17.00 0.16 0.00 4.34
2521 4053 6.015180 GGATATTATTGTCACGTGGTAGGGTA 60.015 42.308 17.00 2.07 0.00 3.69
2522 4054 4.454728 TTATTGTCACGTGGTAGGGTAC 57.545 45.455 17.00 4.97 0.00 3.34
2523 4055 0.597568 TTGTCACGTGGTAGGGTACG 59.402 55.000 17.00 0.00 45.19 3.67
2524 4056 0.250684 TGTCACGTGGTAGGGTACGA 60.251 55.000 17.00 0.00 42.54 3.43
2525 4057 0.169009 GTCACGTGGTAGGGTACGAC 59.831 60.000 17.00 0.00 42.54 4.34
2526 4058 0.960364 TCACGTGGTAGGGTACGACC 60.960 60.000 17.00 3.82 42.54 4.79
2527 4059 2.040544 ACGTGGTAGGGTACGACCG 61.041 63.158 3.64 0.00 44.45 4.79
2528 4060 1.745115 CGTGGTAGGGTACGACCGA 60.745 63.158 0.00 0.00 44.45 4.69
2529 4061 1.097547 CGTGGTAGGGTACGACCGAT 61.098 60.000 0.00 0.00 44.45 4.18
2530 4062 0.383231 GTGGTAGGGTACGACCGATG 59.617 60.000 0.00 0.00 44.45 3.84
2531 4063 0.255604 TGGTAGGGTACGACCGATGA 59.744 55.000 0.00 0.00 44.45 2.92
2532 4064 1.340893 TGGTAGGGTACGACCGATGAA 60.341 52.381 0.00 0.00 44.45 2.57
2533 4065 1.066152 GGTAGGGTACGACCGATGAAC 59.934 57.143 0.00 0.00 39.83 3.18
2534 4066 1.745087 GTAGGGTACGACCGATGAACA 59.255 52.381 0.00 0.00 39.83 3.18
2535 4067 1.481871 AGGGTACGACCGATGAACAT 58.518 50.000 0.00 0.00 39.83 2.71
2536 4068 1.136305 AGGGTACGACCGATGAACATG 59.864 52.381 0.00 0.00 39.83 3.21
2537 4069 1.135527 GGGTACGACCGATGAACATGA 59.864 52.381 0.00 0.00 39.83 3.07
2538 4070 2.190981 GGTACGACCGATGAACATGAC 58.809 52.381 0.00 0.00 0.00 3.06
2539 4071 2.416296 GGTACGACCGATGAACATGACA 60.416 50.000 0.00 0.00 0.00 3.58
2540 4072 2.672961 ACGACCGATGAACATGACAT 57.327 45.000 0.00 4.71 0.00 3.06
2541 4073 2.270923 ACGACCGATGAACATGACATG 58.729 47.619 14.02 14.02 0.00 3.21
2542 4074 1.594397 CGACCGATGAACATGACATGG 59.406 52.381 19.39 14.66 33.60 3.66
2543 4075 2.632377 GACCGATGAACATGACATGGT 58.368 47.619 19.39 13.49 34.51 3.55
2544 4076 3.009723 GACCGATGAACATGACATGGTT 58.990 45.455 19.39 10.88 33.19 3.67
2545 4077 3.420893 ACCGATGAACATGACATGGTTT 58.579 40.909 19.39 5.73 30.92 3.27
2546 4078 3.191162 ACCGATGAACATGACATGGTTTG 59.809 43.478 19.39 3.14 30.92 2.93
2547 4079 3.427909 CCGATGAACATGACATGGTTTGG 60.428 47.826 19.39 8.52 33.60 3.28
2548 4080 3.427909 CGATGAACATGACATGGTTTGGG 60.428 47.826 19.39 1.33 33.60 4.12
2549 4081 2.246469 TGAACATGACATGGTTTGGGG 58.754 47.619 19.39 0.00 33.60 4.96
2550 4082 2.247358 GAACATGACATGGTTTGGGGT 58.753 47.619 19.39 0.00 33.60 4.95
2551 4083 3.181428 TGAACATGACATGGTTTGGGGTA 60.181 43.478 19.39 0.00 33.60 3.69
2552 4084 3.756082 ACATGACATGGTTTGGGGTAT 57.244 42.857 19.39 0.00 33.60 2.73
2553 4085 4.871871 ACATGACATGGTTTGGGGTATA 57.128 40.909 19.39 0.00 33.60 1.47
2554 4086 4.792068 ACATGACATGGTTTGGGGTATAG 58.208 43.478 19.39 0.00 33.60 1.31
2555 4087 3.290948 TGACATGGTTTGGGGTATAGC 57.709 47.619 0.00 0.00 0.00 2.97
2556 4088 2.849943 TGACATGGTTTGGGGTATAGCT 59.150 45.455 1.32 0.00 0.00 3.32
2557 4089 3.118038 TGACATGGTTTGGGGTATAGCTC 60.118 47.826 1.32 0.00 0.00 4.09
2558 4090 2.174854 ACATGGTTTGGGGTATAGCTCC 59.825 50.000 0.00 1.15 38.57 4.70
2559 4091 0.834612 TGGTTTGGGGTATAGCTCCG 59.165 55.000 0.00 0.00 42.03 4.63
2560 4092 1.125633 GGTTTGGGGTATAGCTCCGA 58.874 55.000 0.00 0.00 42.03 4.55
2561 4093 1.070289 GGTTTGGGGTATAGCTCCGAG 59.930 57.143 0.00 0.00 42.03 4.63
2562 4094 2.037144 GTTTGGGGTATAGCTCCGAGA 58.963 52.381 0.00 0.00 42.03 4.04
2563 4095 1.996798 TTGGGGTATAGCTCCGAGAG 58.003 55.000 0.00 0.00 42.03 3.20
2573 4105 2.846371 CTCCGAGAGCAAAGGTTGG 58.154 57.895 0.00 0.00 0.00 3.77
2574 4106 0.035458 CTCCGAGAGCAAAGGTTGGT 59.965 55.000 0.00 0.00 45.34 3.67
2575 4107 0.472471 TCCGAGAGCAAAGGTTGGTT 59.528 50.000 0.00 0.00 42.23 3.67
2576 4108 1.133915 TCCGAGAGCAAAGGTTGGTTT 60.134 47.619 0.00 0.00 42.23 3.27
2577 4109 2.105134 TCCGAGAGCAAAGGTTGGTTTA 59.895 45.455 0.00 0.00 42.23 2.01
2578 4110 2.484264 CCGAGAGCAAAGGTTGGTTTAG 59.516 50.000 0.00 0.00 42.23 1.85
2579 4111 3.139077 CGAGAGCAAAGGTTGGTTTAGT 58.861 45.455 0.00 0.00 42.23 2.24
2580 4112 3.186613 CGAGAGCAAAGGTTGGTTTAGTC 59.813 47.826 0.00 0.00 42.23 2.59
2581 4113 4.134563 GAGAGCAAAGGTTGGTTTAGTCA 58.865 43.478 0.00 0.00 42.23 3.41
2582 4114 4.729868 AGAGCAAAGGTTGGTTTAGTCAT 58.270 39.130 0.00 0.00 42.23 3.06
2583 4115 4.520492 AGAGCAAAGGTTGGTTTAGTCATG 59.480 41.667 0.00 0.00 42.23 3.07
2584 4116 3.573967 AGCAAAGGTTGGTTTAGTCATGG 59.426 43.478 0.00 0.00 38.40 3.66
2585 4117 3.320826 GCAAAGGTTGGTTTAGTCATGGT 59.679 43.478 0.00 0.00 0.00 3.55
2586 4118 4.795962 GCAAAGGTTGGTTTAGTCATGGTG 60.796 45.833 0.00 0.00 0.00 4.17
2587 4119 2.514803 AGGTTGGTTTAGTCATGGTGC 58.485 47.619 0.00 0.00 0.00 5.01
2588 4120 1.544246 GGTTGGTTTAGTCATGGTGCC 59.456 52.381 0.00 0.00 0.00 5.01
2589 4121 1.199097 GTTGGTTTAGTCATGGTGCCG 59.801 52.381 0.00 0.00 0.00 5.69
2590 4122 0.687920 TGGTTTAGTCATGGTGCCGA 59.312 50.000 0.00 0.00 0.00 5.54
2591 4123 1.338674 TGGTTTAGTCATGGTGCCGAG 60.339 52.381 0.00 0.00 0.00 4.63
2592 4124 1.369625 GTTTAGTCATGGTGCCGAGG 58.630 55.000 0.00 0.00 0.00 4.63
2593 4125 1.066430 GTTTAGTCATGGTGCCGAGGA 60.066 52.381 0.00 0.00 0.00 3.71
2594 4126 1.496060 TTAGTCATGGTGCCGAGGAT 58.504 50.000 0.00 0.00 0.00 3.24
2595 4127 0.752658 TAGTCATGGTGCCGAGGATG 59.247 55.000 0.00 0.00 0.00 3.51
2596 4128 0.977627 AGTCATGGTGCCGAGGATGA 60.978 55.000 0.00 0.00 0.00 2.92
2597 4129 0.531532 GTCATGGTGCCGAGGATGAG 60.532 60.000 0.00 0.00 0.00 2.90
2598 4130 0.687427 TCATGGTGCCGAGGATGAGA 60.687 55.000 0.00 0.00 0.00 3.27
2599 4131 0.249784 CATGGTGCCGAGGATGAGAG 60.250 60.000 0.00 0.00 0.00 3.20
2600 4132 0.397675 ATGGTGCCGAGGATGAGAGA 60.398 55.000 0.00 0.00 0.00 3.10
2601 4133 1.039785 TGGTGCCGAGGATGAGAGAG 61.040 60.000 0.00 0.00 0.00 3.20
2602 4134 0.753479 GGTGCCGAGGATGAGAGAGA 60.753 60.000 0.00 0.00 0.00 3.10
2603 4135 0.667993 GTGCCGAGGATGAGAGAGAG 59.332 60.000 0.00 0.00 0.00 3.20
2604 4136 0.548510 TGCCGAGGATGAGAGAGAGA 59.451 55.000 0.00 0.00 0.00 3.10
2605 4137 1.238439 GCCGAGGATGAGAGAGAGAG 58.762 60.000 0.00 0.00 0.00 3.20
2606 4138 1.896220 CCGAGGATGAGAGAGAGAGG 58.104 60.000 0.00 0.00 0.00 3.69
2607 4139 1.545428 CCGAGGATGAGAGAGAGAGGG 60.545 61.905 0.00 0.00 0.00 4.30
2608 4140 1.545428 CGAGGATGAGAGAGAGAGGGG 60.545 61.905 0.00 0.00 0.00 4.79
2609 4141 0.859760 AGGATGAGAGAGAGAGGGGG 59.140 60.000 0.00 0.00 0.00 5.40
2610 4142 0.560688 GGATGAGAGAGAGAGGGGGT 59.439 60.000 0.00 0.00 0.00 4.95
2611 4143 1.062505 GGATGAGAGAGAGAGGGGGTT 60.063 57.143 0.00 0.00 0.00 4.11
2612 4144 2.038659 GATGAGAGAGAGAGGGGGTTG 58.961 57.143 0.00 0.00 0.00 3.77
2613 4145 0.041833 TGAGAGAGAGAGGGGGTTGG 59.958 60.000 0.00 0.00 0.00 3.77
2614 4146 0.689412 GAGAGAGAGAGGGGGTTGGG 60.689 65.000 0.00 0.00 0.00 4.12
2615 4147 1.690985 GAGAGAGAGGGGGTTGGGG 60.691 68.421 0.00 0.00 0.00 4.96
2616 4148 2.182858 GAGAGAGAGGGGGTTGGGGA 62.183 65.000 0.00 0.00 0.00 4.81
2617 4149 1.996187 GAGAGAGGGGGTTGGGGAC 60.996 68.421 0.00 0.00 0.00 4.46
2618 4150 2.204090 GAGAGGGGGTTGGGGACA 60.204 66.667 0.00 0.00 39.83 4.02
2619 4151 1.619669 GAGAGGGGGTTGGGGACAT 60.620 63.158 0.00 0.00 42.32 3.06
2620 4152 1.926426 GAGAGGGGGTTGGGGACATG 61.926 65.000 0.00 0.00 42.32 3.21
2621 4153 3.662117 GAGGGGGTTGGGGACATGC 62.662 68.421 0.00 0.00 42.32 4.06
2622 4154 3.991318 GGGGGTTGGGGACATGCA 61.991 66.667 0.00 0.00 42.32 3.96
2623 4155 2.364160 GGGGTTGGGGACATGCAT 59.636 61.111 0.00 0.00 42.32 3.96
2624 4156 1.618030 GGGGTTGGGGACATGCATA 59.382 57.895 0.00 0.00 42.32 3.14
2625 4157 0.188342 GGGGTTGGGGACATGCATAT 59.812 55.000 0.00 0.00 42.32 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.248420 GTGGATACGATTCAAATTTGTTCGTG 59.752 38.462 35.04 20.80 42.86 4.35
1 2 6.311723 GTGGATACGATTCAAATTTGTTCGT 58.688 36.000 32.88 32.88 44.06 3.85
20 21 2.367567 ACGCTATCAAATACCGGTGGAT 59.632 45.455 19.93 16.43 0.00 3.41
26 27 2.129823 ACGGACGCTATCAAATACCG 57.870 50.000 0.00 0.00 43.61 4.02
157 159 1.309688 GCCCCTGGGATTTGGCTTA 59.690 57.895 16.20 0.00 40.77 3.09
180 182 5.641155 AGGAGTAGGCTGGTTTAATTTGTT 58.359 37.500 0.00 0.00 0.00 2.83
217 219 4.431416 TTGTCACATTGTCCCACTAAGT 57.569 40.909 0.00 0.00 0.00 2.24
264 266 1.493022 ACTAGGAAAATATGGCGGCCA 59.507 47.619 26.11 26.11 38.19 5.36
271 273 9.942850 AAAATTCCAACCAACTAGGAAAATATG 57.057 29.630 0.00 0.00 43.96 1.78
316 318 4.038642 TGTGGCCAAAAGAAATAAGTGACC 59.961 41.667 7.24 0.00 0.00 4.02
339 341 3.139077 CTGAGCCGGTTACAAAAAGAGT 58.861 45.455 1.90 0.00 0.00 3.24
402 404 2.461300 TGACATTTTTGGACCACCCA 57.539 45.000 0.00 0.00 44.93 4.51
429 431 4.235079 ACCTAACCATCTAAGCAATGCA 57.765 40.909 8.35 0.00 0.00 3.96
468 470 6.321181 TGTCAAATCTAAAACTTGAAGCCAGT 59.679 34.615 0.00 0.00 31.21 4.00
515 517 2.610374 CGTCGGAGAACCTGAAACAAAA 59.390 45.455 0.00 0.00 39.69 2.44
549 551 4.415881 AGTTGACGGGCATGTTATATCA 57.584 40.909 0.00 0.00 0.00 2.15
556 558 1.831106 TCTCATAGTTGACGGGCATGT 59.169 47.619 0.00 0.00 0.00 3.21
579 581 9.260190 GATCTTAAGATTGACGAAGTTGCCAGG 62.260 44.444 18.88 0.00 36.08 4.45
614 616 3.195825 GGCTTAGCTCTTCCAAGACACTA 59.804 47.826 3.59 0.00 0.00 2.74
622 624 5.431765 CAATTTCTAGGCTTAGCTCTTCCA 58.568 41.667 3.59 0.00 0.00 3.53
633 635 5.990120 ATTTTCACTGCAATTTCTAGGCT 57.010 34.783 0.00 0.00 0.00 4.58
665 667 3.194755 ACCCCTTTTTGCATTAATCCGTC 59.805 43.478 0.00 0.00 0.00 4.79
666 668 3.169908 ACCCCTTTTTGCATTAATCCGT 58.830 40.909 0.00 0.00 0.00 4.69
682 684 4.481280 TCACTTCTAGTACTATGGACCCCT 59.519 45.833 2.33 0.00 0.00 4.79
690 692 5.221067 CGTGGTGCATCACTTCTAGTACTAT 60.221 44.000 26.71 0.00 35.63 2.12
697 699 2.683968 GTTCGTGGTGCATCACTTCTA 58.316 47.619 26.71 7.77 35.63 2.10
727 729 6.596309 AATTTCCACTCCAATTCCTTCTTC 57.404 37.500 0.00 0.00 0.00 2.87
737 739 5.309638 TCATACACGAAATTTCCACTCCAA 58.690 37.500 12.54 0.00 0.00 3.53
862 870 3.554731 GCCGGGCGTTATTTATAGATAGC 59.445 47.826 1.81 0.00 0.00 2.97
879 887 2.824041 CGGAACCAAGATGCCGGG 60.824 66.667 2.18 0.00 40.08 5.73
929 937 4.894114 GCCCTAGTAGTAGTTCTTGGATGA 59.106 45.833 6.30 0.00 0.00 2.92
934 942 5.401531 TTGTGCCCTAGTAGTAGTTCTTG 57.598 43.478 3.91 0.00 0.00 3.02
982 1022 1.039856 ATTGGCCGCTTGTTTTGAGT 58.960 45.000 0.00 0.00 0.00 3.41
1026 1066 3.576118 CACCATTTGACCCACCAAACATA 59.424 43.478 0.00 0.00 38.65 2.29
1076 1117 3.127533 GGCTTGACGGCGCAGAAT 61.128 61.111 16.26 0.00 0.00 2.40
1235 1276 5.932303 CACTATATATTTTGACGTGGAGGGG 59.068 44.000 0.00 0.00 0.00 4.79
1257 1299 4.963276 TCCAACTTGCTAATATGCACAC 57.037 40.909 0.00 0.00 43.20 3.82
1297 1345 6.938698 TTTACCCAGAGTTAGTTATCACCA 57.061 37.500 0.00 0.00 0.00 4.17
1299 1347 7.494952 GTCCATTTACCCAGAGTTAGTTATCAC 59.505 40.741 0.00 0.00 0.00 3.06
1308 1356 5.251700 AGAGATTGTCCATTTACCCAGAGTT 59.748 40.000 0.00 0.00 0.00 3.01
1314 1362 7.054124 TGTATCAAGAGATTGTCCATTTACCC 58.946 38.462 0.00 0.00 35.67 3.69
1325 1376 7.974675 ACGGTTAAACATGTATCAAGAGATTG 58.025 34.615 0.00 0.00 35.67 2.67
1329 1380 8.475331 ACTAACGGTTAAACATGTATCAAGAG 57.525 34.615 0.00 0.00 0.00 2.85
1337 1391 9.498176 AGAGAAATAACTAACGGTTAAACATGT 57.502 29.630 1.79 0.00 42.74 3.21
1362 1418 4.389992 AGTCTGCACGAACACATAATCAAG 59.610 41.667 0.00 0.00 0.00 3.02
1363 1419 4.314961 AGTCTGCACGAACACATAATCAA 58.685 39.130 0.00 0.00 0.00 2.57
1375 1431 3.005367 TGTCAAGTGAATAGTCTGCACGA 59.995 43.478 0.00 0.00 37.60 4.35
1523 1579 1.384222 GGATGCGGAAATGGGTGTCC 61.384 60.000 0.00 0.00 0.00 4.02
1544 1600 3.983988 CGACGATAGAACCATTCATGAGG 59.016 47.826 0.00 0.00 41.38 3.86
1713 1769 2.018137 CAACGACGTACATGCGCG 59.982 61.111 0.00 0.00 37.39 6.86
1715 1771 0.779408 TGAACAACGACGTACATGCG 59.221 50.000 0.00 0.00 37.94 4.73
1717 1773 5.547341 CCTTATTGAACAACGACGTACATG 58.453 41.667 0.00 0.00 0.00 3.21
1718 1774 4.092383 GCCTTATTGAACAACGACGTACAT 59.908 41.667 0.00 0.00 0.00 2.29
1788 1884 5.394224 TCACTGACACCGACATAAACATA 57.606 39.130 0.00 0.00 0.00 2.29
1794 1890 2.565391 ACCAATCACTGACACCGACATA 59.435 45.455 0.00 0.00 0.00 2.29
1799 1895 0.673644 GGGACCAATCACTGACACCG 60.674 60.000 0.00 0.00 0.00 4.94
1805 1901 1.171308 CAGCAAGGGACCAATCACTG 58.829 55.000 0.00 0.00 37.75 3.66
1882 1978 7.852454 ACGTTGTTCGGAAATTACTTAAGTTTC 59.148 33.333 14.49 11.32 44.69 2.78
1907 2003 0.884704 TCTCGCAAGCAGGGTTTCAC 60.885 55.000 0.00 0.00 37.18 3.18
1945 2041 5.050490 GGAGAAAGAGAGTAAATATGCGCA 58.950 41.667 14.96 14.96 0.00 6.09
1957 2053 8.093927 ACTTAAAATCACAGAGGAGAAAGAGAG 58.906 37.037 0.00 0.00 0.00 3.20
1973 2069 8.855110 TGCCATTTCTCTACAAACTTAAAATCA 58.145 29.630 0.00 0.00 0.00 2.57
2046 3462 3.813166 GCTGGCTGTGTGTTTTAGTTCTA 59.187 43.478 0.00 0.00 0.00 2.10
2092 3508 9.386010 ACGTTGGTAACTATGAATTAATTGCTA 57.614 29.630 5.17 0.00 37.61 3.49
2093 3509 8.276252 ACGTTGGTAACTATGAATTAATTGCT 57.724 30.769 5.17 0.00 37.61 3.91
2094 3510 8.905103 AACGTTGGTAACTATGAATTAATTGC 57.095 30.769 5.17 0.00 37.61 3.56
2129 3650 7.618137 ACAACTTGTCCGGTCTTATAGTTAAT 58.382 34.615 0.00 0.00 0.00 1.40
2150 3674 7.246674 TCACATCACAGAACTTTCTAACAAC 57.753 36.000 0.00 0.00 35.34 3.32
2232 3757 1.752198 GGCCGGGATGCACTACATA 59.248 57.895 2.18 0.00 39.84 2.29
2291 3818 0.253610 TTTGGCGGATCGGTTGGTAT 59.746 50.000 1.93 0.00 0.00 2.73
2314 3841 0.249868 TTGTTCTGGCACGTCCTCTG 60.250 55.000 5.77 0.00 35.26 3.35
2326 3858 3.276857 CCTGTCATCCATCCTTGTTCTG 58.723 50.000 0.00 0.00 0.00 3.02
2373 3905 9.294030 CTCAGATGGAATATAAAAACTTGTTGC 57.706 33.333 0.00 0.00 0.00 4.17
2395 3927 5.594725 TGCTCCTGTACTTACCTATTCTCAG 59.405 44.000 0.00 0.00 0.00 3.35
2409 3941 6.311445 CGAATAATGTGGATATGCTCCTGTAC 59.689 42.308 0.00 0.00 45.21 2.90
2410 3942 6.014584 ACGAATAATGTGGATATGCTCCTGTA 60.015 38.462 0.00 0.00 45.21 2.74
2411 3943 5.221722 ACGAATAATGTGGATATGCTCCTGT 60.222 40.000 0.00 0.00 45.21 4.00
2412 3944 5.240891 ACGAATAATGTGGATATGCTCCTG 58.759 41.667 0.00 0.00 45.21 3.86
2413 3945 5.489792 ACGAATAATGTGGATATGCTCCT 57.510 39.130 0.00 0.00 45.21 3.69
2414 3946 7.549134 TGATAACGAATAATGTGGATATGCTCC 59.451 37.037 0.00 0.00 45.19 4.70
2415 3947 8.479313 TGATAACGAATAATGTGGATATGCTC 57.521 34.615 0.00 0.00 0.00 4.26
2416 3948 7.550551 CCTGATAACGAATAATGTGGATATGCT 59.449 37.037 0.00 0.00 0.00 3.79
2417 3949 7.549134 TCCTGATAACGAATAATGTGGATATGC 59.451 37.037 0.00 0.00 0.00 3.14
2418 3950 9.605275 ATCCTGATAACGAATAATGTGGATATG 57.395 33.333 0.00 0.00 0.00 1.78
2419 3951 9.605275 CATCCTGATAACGAATAATGTGGATAT 57.395 33.333 0.00 0.00 0.00 1.63
2420 3952 7.549134 GCATCCTGATAACGAATAATGTGGATA 59.451 37.037 0.00 0.00 0.00 2.59
2421 3953 6.372659 GCATCCTGATAACGAATAATGTGGAT 59.627 38.462 0.00 0.00 0.00 3.41
2422 3954 5.700832 GCATCCTGATAACGAATAATGTGGA 59.299 40.000 0.00 0.00 0.00 4.02
2423 3955 5.469760 TGCATCCTGATAACGAATAATGTGG 59.530 40.000 0.00 0.00 0.00 4.17
2424 3956 6.424812 TCTGCATCCTGATAACGAATAATGTG 59.575 38.462 0.00 0.00 0.00 3.21
2425 3957 6.524734 TCTGCATCCTGATAACGAATAATGT 58.475 36.000 0.00 0.00 0.00 2.71
2426 3958 7.606858 ATCTGCATCCTGATAACGAATAATG 57.393 36.000 0.00 0.00 0.00 1.90
2427 3959 7.663081 ACAATCTGCATCCTGATAACGAATAAT 59.337 33.333 0.00 0.00 0.00 1.28
2428 3960 6.992123 ACAATCTGCATCCTGATAACGAATAA 59.008 34.615 0.00 0.00 0.00 1.40
2429 3961 6.524734 ACAATCTGCATCCTGATAACGAATA 58.475 36.000 0.00 0.00 0.00 1.75
2430 3962 5.371526 ACAATCTGCATCCTGATAACGAAT 58.628 37.500 0.00 0.00 0.00 3.34
2431 3963 4.769688 ACAATCTGCATCCTGATAACGAA 58.230 39.130 0.00 0.00 0.00 3.85
2432 3964 4.371786 GACAATCTGCATCCTGATAACGA 58.628 43.478 0.00 0.00 0.00 3.85
2433 3965 3.496130 GGACAATCTGCATCCTGATAACG 59.504 47.826 0.00 0.00 0.00 3.18
2434 3966 4.454678 TGGACAATCTGCATCCTGATAAC 58.545 43.478 4.96 0.00 33.34 1.89
2435 3967 4.776435 TGGACAATCTGCATCCTGATAA 57.224 40.909 4.96 0.00 33.34 1.75
2436 3968 4.987963 ATGGACAATCTGCATCCTGATA 57.012 40.909 4.96 0.00 33.34 2.15
2437 3969 3.878237 ATGGACAATCTGCATCCTGAT 57.122 42.857 4.96 0.00 33.34 2.90
2438 3970 3.657398 AATGGACAATCTGCATCCTGA 57.343 42.857 4.96 0.00 33.34 3.86
2439 3971 4.158949 TGAAAATGGACAATCTGCATCCTG 59.841 41.667 4.96 0.00 33.34 3.86
2440 3972 4.346730 TGAAAATGGACAATCTGCATCCT 58.653 39.130 4.96 0.00 33.34 3.24
2441 3973 4.724074 TGAAAATGGACAATCTGCATCC 57.276 40.909 0.00 0.00 28.88 3.51
2442 3974 7.088905 GGATATGAAAATGGACAATCTGCATC 58.911 38.462 0.00 0.00 28.88 3.91
2443 3975 6.551975 TGGATATGAAAATGGACAATCTGCAT 59.448 34.615 0.00 0.00 30.75 3.96
2444 3976 5.892686 TGGATATGAAAATGGACAATCTGCA 59.107 36.000 0.00 0.00 0.00 4.41
2445 3977 6.183360 TGTGGATATGAAAATGGACAATCTGC 60.183 38.462 0.00 0.00 0.00 4.26
2446 3978 7.337480 TGTGGATATGAAAATGGACAATCTG 57.663 36.000 0.00 0.00 0.00 2.90
2447 3979 8.543293 AATGTGGATATGAAAATGGACAATCT 57.457 30.769 0.00 0.00 0.00 2.40
2490 4022 8.974060 ACCACGTGACAATAATATCCTTATTT 57.026 30.769 19.30 0.00 30.64 1.40
2491 4023 9.706691 CTACCACGTGACAATAATATCCTTATT 57.293 33.333 19.30 0.00 32.75 1.40
2492 4024 8.311836 CCTACCACGTGACAATAATATCCTTAT 58.688 37.037 19.30 0.00 0.00 1.73
2493 4025 7.256048 CCCTACCACGTGACAATAATATCCTTA 60.256 40.741 19.30 0.00 0.00 2.69
2494 4026 6.463897 CCCTACCACGTGACAATAATATCCTT 60.464 42.308 19.30 0.00 0.00 3.36
2495 4027 5.011738 CCCTACCACGTGACAATAATATCCT 59.988 44.000 19.30 0.00 0.00 3.24
2496 4028 5.221581 ACCCTACCACGTGACAATAATATCC 60.222 44.000 19.30 0.00 0.00 2.59
2497 4029 5.850614 ACCCTACCACGTGACAATAATATC 58.149 41.667 19.30 0.00 0.00 1.63
2498 4030 5.881923 ACCCTACCACGTGACAATAATAT 57.118 39.130 19.30 0.00 0.00 1.28
2499 4031 5.221028 CGTACCCTACCACGTGACAATAATA 60.221 44.000 19.30 0.00 33.56 0.98
2500 4032 4.440525 CGTACCCTACCACGTGACAATAAT 60.441 45.833 19.30 0.00 33.56 1.28
2501 4033 3.119531 CGTACCCTACCACGTGACAATAA 60.120 47.826 19.30 0.00 33.56 1.40
2502 4034 2.423185 CGTACCCTACCACGTGACAATA 59.577 50.000 19.30 2.95 33.56 1.90
2503 4035 1.203052 CGTACCCTACCACGTGACAAT 59.797 52.381 19.30 1.77 33.56 2.71
2504 4036 0.597568 CGTACCCTACCACGTGACAA 59.402 55.000 19.30 0.26 33.56 3.18
2505 4037 0.250684 TCGTACCCTACCACGTGACA 60.251 55.000 19.30 2.69 39.18 3.58
2506 4038 0.169009 GTCGTACCCTACCACGTGAC 59.831 60.000 19.30 3.99 39.18 3.67
2507 4039 0.960364 GGTCGTACCCTACCACGTGA 60.960 60.000 19.30 0.00 39.18 4.35
2508 4040 1.508088 GGTCGTACCCTACCACGTG 59.492 63.158 9.08 9.08 39.18 4.49
2509 4041 2.040544 CGGTCGTACCCTACCACGT 61.041 63.158 7.30 0.00 39.18 4.49
2510 4042 1.097547 ATCGGTCGTACCCTACCACG 61.098 60.000 7.30 0.00 39.48 4.94
2511 4043 0.383231 CATCGGTCGTACCCTACCAC 59.617 60.000 7.30 0.00 33.75 4.16
2512 4044 0.255604 TCATCGGTCGTACCCTACCA 59.744 55.000 7.30 0.00 33.75 3.25
2513 4045 1.066152 GTTCATCGGTCGTACCCTACC 59.934 57.143 0.00 0.00 33.75 3.18
2514 4046 1.745087 TGTTCATCGGTCGTACCCTAC 59.255 52.381 0.00 0.00 33.75 3.18
2515 4047 2.127271 TGTTCATCGGTCGTACCCTA 57.873 50.000 0.00 0.00 33.75 3.53
2516 4048 1.136305 CATGTTCATCGGTCGTACCCT 59.864 52.381 0.00 0.00 33.75 4.34
2517 4049 1.135527 TCATGTTCATCGGTCGTACCC 59.864 52.381 0.00 0.00 33.75 3.69
2518 4050 2.190981 GTCATGTTCATCGGTCGTACC 58.809 52.381 0.00 0.00 34.05 3.34
2519 4051 2.871133 TGTCATGTTCATCGGTCGTAC 58.129 47.619 0.00 0.00 0.00 3.67
2520 4052 3.443976 CATGTCATGTTCATCGGTCGTA 58.556 45.455 4.53 0.00 0.00 3.43
2521 4053 2.270923 CATGTCATGTTCATCGGTCGT 58.729 47.619 4.53 0.00 0.00 4.34
2522 4054 1.594397 CCATGTCATGTTCATCGGTCG 59.406 52.381 11.84 0.00 0.00 4.79
2523 4055 2.632377 ACCATGTCATGTTCATCGGTC 58.368 47.619 11.84 0.00 0.00 4.79
2524 4056 2.787473 ACCATGTCATGTTCATCGGT 57.213 45.000 11.84 14.59 0.00 4.69
2525 4057 3.427909 CCAAACCATGTCATGTTCATCGG 60.428 47.826 11.84 6.59 0.00 4.18
2526 4058 3.427909 CCCAAACCATGTCATGTTCATCG 60.428 47.826 11.84 0.00 0.00 3.84
2527 4059 3.119029 CCCCAAACCATGTCATGTTCATC 60.119 47.826 11.84 0.00 0.00 2.92
2528 4060 2.833338 CCCCAAACCATGTCATGTTCAT 59.167 45.455 11.84 0.00 0.00 2.57
2529 4061 2.246469 CCCCAAACCATGTCATGTTCA 58.754 47.619 11.84 0.00 0.00 3.18
2530 4062 2.247358 ACCCCAAACCATGTCATGTTC 58.753 47.619 11.84 0.00 0.00 3.18
2531 4063 2.397044 ACCCCAAACCATGTCATGTT 57.603 45.000 11.84 3.87 0.00 2.71
2532 4064 3.756082 ATACCCCAAACCATGTCATGT 57.244 42.857 11.84 0.00 0.00 3.21
2533 4065 3.569701 GCTATACCCCAAACCATGTCATG 59.430 47.826 5.79 5.79 0.00 3.07
2534 4066 3.463329 AGCTATACCCCAAACCATGTCAT 59.537 43.478 0.00 0.00 0.00 3.06
2535 4067 2.849943 AGCTATACCCCAAACCATGTCA 59.150 45.455 0.00 0.00 0.00 3.58
2536 4068 3.477530 GAGCTATACCCCAAACCATGTC 58.522 50.000 0.00 0.00 0.00 3.06
2537 4069 2.174854 GGAGCTATACCCCAAACCATGT 59.825 50.000 0.00 0.00 0.00 3.21
2538 4070 2.810400 CGGAGCTATACCCCAAACCATG 60.810 54.545 0.00 0.00 0.00 3.66
2539 4071 1.420138 CGGAGCTATACCCCAAACCAT 59.580 52.381 0.00 0.00 0.00 3.55
2540 4072 0.834612 CGGAGCTATACCCCAAACCA 59.165 55.000 0.00 0.00 0.00 3.67
2541 4073 1.070289 CTCGGAGCTATACCCCAAACC 59.930 57.143 0.00 0.00 0.00 3.27
2542 4074 2.036089 CTCTCGGAGCTATACCCCAAAC 59.964 54.545 0.00 0.00 0.00 2.93
2543 4075 2.317040 CTCTCGGAGCTATACCCCAAA 58.683 52.381 0.00 0.00 0.00 3.28
2544 4076 1.996798 CTCTCGGAGCTATACCCCAA 58.003 55.000 0.00 0.00 0.00 4.12
2545 4077 3.747735 CTCTCGGAGCTATACCCCA 57.252 57.895 0.00 0.00 0.00 4.96
2555 4087 0.035458 ACCAACCTTTGCTCTCGGAG 59.965 55.000 0.00 0.00 0.00 4.63
2556 4088 0.472471 AACCAACCTTTGCTCTCGGA 59.528 50.000 0.00 0.00 0.00 4.55
2557 4089 1.318576 AAACCAACCTTTGCTCTCGG 58.681 50.000 0.00 0.00 0.00 4.63
2558 4090 3.139077 ACTAAACCAACCTTTGCTCTCG 58.861 45.455 0.00 0.00 0.00 4.04
2559 4091 4.134563 TGACTAAACCAACCTTTGCTCTC 58.865 43.478 0.00 0.00 0.00 3.20
2560 4092 4.164843 TGACTAAACCAACCTTTGCTCT 57.835 40.909 0.00 0.00 0.00 4.09
2561 4093 4.321230 CCATGACTAAACCAACCTTTGCTC 60.321 45.833 0.00 0.00 0.00 4.26
2562 4094 3.573967 CCATGACTAAACCAACCTTTGCT 59.426 43.478 0.00 0.00 0.00 3.91
2563 4095 3.320826 ACCATGACTAAACCAACCTTTGC 59.679 43.478 0.00 0.00 0.00 3.68
2564 4096 4.795962 GCACCATGACTAAACCAACCTTTG 60.796 45.833 0.00 0.00 0.00 2.77
2565 4097 3.320826 GCACCATGACTAAACCAACCTTT 59.679 43.478 0.00 0.00 0.00 3.11
2566 4098 2.890945 GCACCATGACTAAACCAACCTT 59.109 45.455 0.00 0.00 0.00 3.50
2567 4099 2.514803 GCACCATGACTAAACCAACCT 58.485 47.619 0.00 0.00 0.00 3.50
2568 4100 1.544246 GGCACCATGACTAAACCAACC 59.456 52.381 0.00 0.00 0.00 3.77
2569 4101 1.199097 CGGCACCATGACTAAACCAAC 59.801 52.381 0.00 0.00 0.00 3.77
2570 4102 1.072489 TCGGCACCATGACTAAACCAA 59.928 47.619 0.00 0.00 0.00 3.67
2571 4103 0.687920 TCGGCACCATGACTAAACCA 59.312 50.000 0.00 0.00 0.00 3.67
2572 4104 1.369625 CTCGGCACCATGACTAAACC 58.630 55.000 0.00 0.00 0.00 3.27
2573 4105 1.066430 TCCTCGGCACCATGACTAAAC 60.066 52.381 0.00 0.00 0.00 2.01
2574 4106 1.271856 TCCTCGGCACCATGACTAAA 58.728 50.000 0.00 0.00 0.00 1.85
2575 4107 1.138859 CATCCTCGGCACCATGACTAA 59.861 52.381 0.00 0.00 0.00 2.24
2576 4108 0.752658 CATCCTCGGCACCATGACTA 59.247 55.000 0.00 0.00 0.00 2.59
2577 4109 0.977627 TCATCCTCGGCACCATGACT 60.978 55.000 0.00 0.00 0.00 3.41
2578 4110 0.531532 CTCATCCTCGGCACCATGAC 60.532 60.000 0.00 0.00 0.00 3.06
2579 4111 0.687427 TCTCATCCTCGGCACCATGA 60.687 55.000 0.00 0.00 0.00 3.07
2580 4112 0.249784 CTCTCATCCTCGGCACCATG 60.250 60.000 0.00 0.00 0.00 3.66
2581 4113 0.397675 TCTCTCATCCTCGGCACCAT 60.398 55.000 0.00 0.00 0.00 3.55
2582 4114 1.000359 TCTCTCATCCTCGGCACCA 60.000 57.895 0.00 0.00 0.00 4.17
2583 4115 0.753479 TCTCTCTCATCCTCGGCACC 60.753 60.000 0.00 0.00 0.00 5.01
2584 4116 0.667993 CTCTCTCTCATCCTCGGCAC 59.332 60.000 0.00 0.00 0.00 5.01
2585 4117 0.548510 TCTCTCTCTCATCCTCGGCA 59.451 55.000 0.00 0.00 0.00 5.69
2586 4118 1.238439 CTCTCTCTCTCATCCTCGGC 58.762 60.000 0.00 0.00 0.00 5.54
2587 4119 1.545428 CCCTCTCTCTCTCATCCTCGG 60.545 61.905 0.00 0.00 0.00 4.63
2588 4120 1.545428 CCCCTCTCTCTCTCATCCTCG 60.545 61.905 0.00 0.00 0.00 4.63
2589 4121 1.203050 CCCCCTCTCTCTCTCATCCTC 60.203 61.905 0.00 0.00 0.00 3.71
2590 4122 0.859760 CCCCCTCTCTCTCTCATCCT 59.140 60.000 0.00 0.00 0.00 3.24
2591 4123 0.560688 ACCCCCTCTCTCTCTCATCC 59.439 60.000 0.00 0.00 0.00 3.51
2592 4124 2.038659 CAACCCCCTCTCTCTCTCATC 58.961 57.143 0.00 0.00 0.00 2.92
2593 4125 1.343884 CCAACCCCCTCTCTCTCTCAT 60.344 57.143 0.00 0.00 0.00 2.90
2594 4126 0.041833 CCAACCCCCTCTCTCTCTCA 59.958 60.000 0.00 0.00 0.00 3.27
2595 4127 0.689412 CCCAACCCCCTCTCTCTCTC 60.689 65.000 0.00 0.00 0.00 3.20
2596 4128 1.394151 CCCAACCCCCTCTCTCTCT 59.606 63.158 0.00 0.00 0.00 3.10
2597 4129 1.690985 CCCCAACCCCCTCTCTCTC 60.691 68.421 0.00 0.00 0.00 3.20
2598 4130 2.184631 TCCCCAACCCCCTCTCTCT 61.185 63.158 0.00 0.00 0.00 3.10
2599 4131 1.996187 GTCCCCAACCCCCTCTCTC 60.996 68.421 0.00 0.00 0.00 3.20
2600 4132 2.125225 GTCCCCAACCCCCTCTCT 59.875 66.667 0.00 0.00 0.00 3.10
2601 4133 1.619669 ATGTCCCCAACCCCCTCTC 60.620 63.158 0.00 0.00 0.00 3.20
2602 4134 1.930656 CATGTCCCCAACCCCCTCT 60.931 63.158 0.00 0.00 0.00 3.69
2603 4135 2.683475 CATGTCCCCAACCCCCTC 59.317 66.667 0.00 0.00 0.00 4.30
2604 4136 3.672503 GCATGTCCCCAACCCCCT 61.673 66.667 0.00 0.00 0.00 4.79
2605 4137 1.943730 TATGCATGTCCCCAACCCCC 61.944 60.000 10.16 0.00 0.00 5.40
2606 4138 0.188342 ATATGCATGTCCCCAACCCC 59.812 55.000 10.16 0.00 0.00 4.95
2607 4139 3.848353 ATATGCATGTCCCCAACCC 57.152 52.632 10.16 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.