Multiple sequence alignment - TraesCS2B01G056400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G056400 chr2B 100.000 3088 0 0 1 3088 27538479 27535392 0.000000e+00 5703.0
1 TraesCS2B01G056400 chr2B 86.772 567 67 5 2524 3088 137193963 137193403 2.610000e-175 625.0
2 TraesCS2B01G056400 chr2B 84.262 305 29 8 1430 1717 27530060 27529758 2.340000e-71 279.0
3 TraesCS2B01G056400 chr2B 77.057 401 57 24 878 1258 27530474 27530089 6.750000e-47 198.0
4 TraesCS2B01G056400 chr2B 95.745 94 4 0 1327 1420 27537060 27537153 5.330000e-33 152.0
5 TraesCS2B01G056400 chr2B 88.679 106 3 3 1326 1430 653585347 653585444 1.500000e-23 121.0
6 TraesCS2B01G056400 chr2A 89.099 688 62 7 1444 2129 17447638 17446962 0.000000e+00 843.0
7 TraesCS2B01G056400 chr2A 90.234 471 26 11 3 472 17491401 17490950 5.700000e-167 597.0
8 TraesCS2B01G056400 chr2A 86.923 520 48 7 1419 1931 17499724 17499218 1.610000e-157 566.0
9 TraesCS2B01G056400 chr2A 88.078 411 36 10 858 1262 17448099 17447696 2.790000e-130 475.0
10 TraesCS2B01G056400 chr2A 83.107 515 62 12 778 1276 17500260 17499755 2.180000e-121 446.0
11 TraesCS2B01G056400 chr2A 94.845 194 6 3 278 471 17448599 17448410 1.800000e-77 300.0
12 TraesCS2B01G056400 chr2A 89.270 233 15 4 27 258 17470555 17470332 1.810000e-72 283.0
13 TraesCS2B01G056400 chr2A 94.536 183 10 0 584 766 17490939 17490757 1.810000e-72 283.0
14 TraesCS2B01G056400 chr2A 88.584 219 25 0 1499 1717 17441240 17441022 1.830000e-67 267.0
15 TraesCS2B01G056400 chr2A 83.444 302 34 9 1430 1717 17481901 17481602 1.830000e-67 267.0
16 TraesCS2B01G056400 chr2A 93.814 97 6 0 627 723 17448410 17448314 2.480000e-31 147.0
17 TraesCS2B01G056400 chr2A 90.625 96 1 2 1325 1420 560782168 560782255 1.500000e-23 121.0
18 TraesCS2B01G056400 chr2A 88.350 103 4 2 1327 1429 630090993 630090899 1.950000e-22 117.0
19 TraesCS2B01G056400 chr2A 100.000 47 0 0 1283 1329 17499768 17499722 1.530000e-13 87.9
20 TraesCS2B01G056400 chr6B 86.111 612 70 10 2484 3088 22883484 22884087 0.000000e+00 645.0
21 TraesCS2B01G056400 chr6B 87.850 107 6 3 1318 1421 705793552 705793450 5.410000e-23 119.0
22 TraesCS2B01G056400 chr3D 86.583 559 67 4 2530 3088 31383205 31382655 7.320000e-171 610.0
23 TraesCS2B01G056400 chr3D 89.109 101 2 3 1327 1426 531693692 531693784 1.950000e-22 117.0
24 TraesCS2B01G056400 chr5B 84.641 612 79 10 2484 3088 50328001 50328604 2.050000e-166 595.0
25 TraesCS2B01G056400 chr5B 97.500 40 1 0 1265 1304 600083809 600083770 5.530000e-08 69.4
26 TraesCS2B01G056400 chr4A 85.714 560 73 3 2529 3088 638666243 638665691 4.440000e-163 584.0
27 TraesCS2B01G056400 chr4A 86.667 135 18 0 2180 2314 638668650 638668516 1.920000e-32 150.0
28 TraesCS2B01G056400 chr7A 85.841 565 59 11 2524 3088 421726080 421725537 5.740000e-162 580.0
29 TraesCS2B01G056400 chr7A 89.305 187 18 2 2904 3088 506292031 506292217 1.850000e-57 233.0
30 TraesCS2B01G056400 chr7A 78.933 375 47 20 2180 2524 421726518 421726146 3.100000e-55 226.0
31 TraesCS2B01G056400 chr7B 85.366 533 58 11 2530 3062 369809646 369809134 4.530000e-148 534.0
32 TraesCS2B01G056400 chr2D 91.919 297 20 3 1833 2127 15397973 15397679 2.220000e-111 412.0
33 TraesCS2B01G056400 chr2D 85.071 422 41 6 1433 1843 15453261 15452851 7.970000e-111 411.0
34 TraesCS2B01G056400 chr2D 81.986 433 39 20 834 1262 15453696 15453299 6.380000e-87 331.0
35 TraesCS2B01G056400 chr2D 85.017 287 32 6 1440 1717 15373008 15372724 6.520000e-72 281.0
36 TraesCS2B01G056400 chr2D 78.680 394 53 17 880 1258 15373455 15373078 1.850000e-57 233.0
37 TraesCS2B01G056400 chr2D 90.278 144 12 2 585 728 15454040 15453899 1.460000e-43 187.0
38 TraesCS2B01G056400 chr2D 86.325 117 10 2 6 122 15455907 15455797 4.180000e-24 122.0
39 TraesCS2B01G056400 chr2D 89.109 101 3 2 1322 1422 434348743 434348651 5.410000e-23 119.0
40 TraesCS2B01G056400 chr2D 100.000 34 0 0 1266 1299 602668299 602668332 2.570000e-06 63.9
41 TraesCS2B01G056400 chr6D 86.400 250 26 5 2841 3088 19700644 19700401 1.830000e-67 267.0
42 TraesCS2B01G056400 chr3A 88.571 105 4 2 1317 1421 213691131 213691035 1.500000e-23 121.0
43 TraesCS2B01G056400 chr3A 84.426 122 10 3 1322 1443 100888809 100888697 9.050000e-21 111.0
44 TraesCS2B01G056400 chr5D 97.500 40 1 0 1265 1304 487506952 487506913 5.530000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G056400 chr2B 27535392 27538479 3087 True 5703.000000 5703 100.0000 1 3088 1 chr2B.!!$R1 3087
1 TraesCS2B01G056400 chr2B 137193403 137193963 560 True 625.000000 625 86.7720 2524 3088 1 chr2B.!!$R2 564
2 TraesCS2B01G056400 chr2B 27529758 27530474 716 True 238.500000 279 80.6595 878 1717 2 chr2B.!!$R3 839
3 TraesCS2B01G056400 chr2A 17446962 17448599 1637 True 441.250000 843 91.4590 278 2129 4 chr2A.!!$R5 1851
4 TraesCS2B01G056400 chr2A 17490757 17491401 644 True 440.000000 597 92.3850 3 766 2 chr2A.!!$R6 763
5 TraesCS2B01G056400 chr2A 17499218 17500260 1042 True 366.633333 566 90.0100 778 1931 3 chr2A.!!$R7 1153
6 TraesCS2B01G056400 chr6B 22883484 22884087 603 False 645.000000 645 86.1110 2484 3088 1 chr6B.!!$F1 604
7 TraesCS2B01G056400 chr3D 31382655 31383205 550 True 610.000000 610 86.5830 2530 3088 1 chr3D.!!$R1 558
8 TraesCS2B01G056400 chr5B 50328001 50328604 603 False 595.000000 595 84.6410 2484 3088 1 chr5B.!!$F1 604
9 TraesCS2B01G056400 chr4A 638665691 638668650 2959 True 367.000000 584 86.1905 2180 3088 2 chr4A.!!$R1 908
10 TraesCS2B01G056400 chr7A 421725537 421726518 981 True 403.000000 580 82.3870 2180 3088 2 chr7A.!!$R1 908
11 TraesCS2B01G056400 chr7B 369809134 369809646 512 True 534.000000 534 85.3660 2530 3062 1 chr7B.!!$R1 532
12 TraesCS2B01G056400 chr2D 15452851 15455907 3056 True 262.750000 411 85.9150 6 1843 4 chr2D.!!$R4 1837
13 TraesCS2B01G056400 chr2D 15372724 15373455 731 True 257.000000 281 81.8485 880 1717 2 chr2D.!!$R3 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 2426 0.040351 CACACAGAGAGGGAGGGAGA 59.96 60.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2240 3765 0.033991 CAGGAGAAGAGGAGACGGGA 60.034 60.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.678934 CTGCCATGCCAAGCCTGT 60.679 61.111 0.00 0.00 0.00 4.00
156 157 6.423604 ACATGTTTTTGTAAATGCCAAGCTAC 59.576 34.615 0.00 0.00 0.00 3.58
174 176 4.290196 AGCTACCAACTGGGGTGTAATTAA 59.710 41.667 0.00 0.00 42.39 1.40
251 359 6.183360 GCTTAACCATTCAATACCACCACTAC 60.183 42.308 0.00 0.00 0.00 2.73
253 361 3.850173 ACCATTCAATACCACCACTACCT 59.150 43.478 0.00 0.00 0.00 3.08
255 363 5.104652 ACCATTCAATACCACCACTACCTAC 60.105 44.000 0.00 0.00 0.00 3.18
256 364 5.130477 CCATTCAATACCACCACTACCTACT 59.870 44.000 0.00 0.00 0.00 2.57
257 365 6.325545 CCATTCAATACCACCACTACCTACTA 59.674 42.308 0.00 0.00 0.00 1.82
258 366 7.016268 CCATTCAATACCACCACTACCTACTAT 59.984 40.741 0.00 0.00 0.00 2.12
260 368 8.469309 TTCAATACCACCACTACCTACTATAC 57.531 38.462 0.00 0.00 0.00 1.47
261 369 7.006509 TCAATACCACCACTACCTACTATACC 58.993 42.308 0.00 0.00 0.00 2.73
267 375 3.893813 CCACTACCTACTATACCACCACC 59.106 52.174 0.00 0.00 0.00 4.61
268 376 4.539726 CACTACCTACTATACCACCACCA 58.460 47.826 0.00 0.00 0.00 4.17
271 379 2.044769 ACCTACTATACCACCACCACCA 59.955 50.000 0.00 0.00 0.00 4.17
273 381 1.282382 ACTATACCACCACCACCACC 58.718 55.000 0.00 0.00 0.00 4.61
274 382 1.281419 CTATACCACCACCACCACCA 58.719 55.000 0.00 0.00 0.00 4.17
275 383 0.985760 TATACCACCACCACCACCAC 59.014 55.000 0.00 0.00 0.00 4.16
276 384 2.119484 ATACCACCACCACCACCACG 62.119 60.000 0.00 0.00 0.00 4.94
411 1583 1.230635 TTTGACGAAGAGCAGCAGCC 61.231 55.000 0.00 0.00 43.56 4.85
499 1746 6.347859 AGTTTTACTACTCCCTCTGTTCAG 57.652 41.667 0.00 0.00 0.00 3.02
500 1747 5.839606 AGTTTTACTACTCCCTCTGTTCAGT 59.160 40.000 0.00 0.00 0.00 3.41
502 1749 6.742559 TTTACTACTCCCTCTGTTCAGTTT 57.257 37.500 0.00 0.00 0.00 2.66
503 1750 6.742559 TTACTACTCCCTCTGTTCAGTTTT 57.257 37.500 0.00 0.00 0.00 2.43
504 1751 7.844493 TTACTACTCCCTCTGTTCAGTTTTA 57.156 36.000 0.00 0.00 0.00 1.52
505 1752 6.936968 ACTACTCCCTCTGTTCAGTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
506 1753 9.537852 TTACTACTCCCTCTGTTCAGTTTTATA 57.462 33.333 0.00 0.00 0.00 0.98
507 1754 8.431910 ACTACTCCCTCTGTTCAGTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
509 1756 6.164176 ACTCCCTCTGTTCAGTTTTATAACG 58.836 40.000 0.00 0.00 39.31 3.18
510 1757 4.933400 TCCCTCTGTTCAGTTTTATAACGC 59.067 41.667 0.00 0.00 39.31 4.84
511 1758 4.201685 CCCTCTGTTCAGTTTTATAACGCG 60.202 45.833 3.53 3.53 39.31 6.01
514 1761 5.672051 TCTGTTCAGTTTTATAACGCGTTG 58.328 37.500 33.40 15.62 39.31 4.10
515 1762 5.234757 TCTGTTCAGTTTTATAACGCGTTGT 59.765 36.000 33.40 28.83 39.31 3.32
516 1763 6.420306 TCTGTTCAGTTTTATAACGCGTTGTA 59.580 34.615 33.40 27.68 39.31 2.41
518 1765 7.404985 TGTTCAGTTTTATAACGCGTTGTAAA 58.595 30.769 35.15 35.15 39.31 2.01
519 1766 7.372918 TGTTCAGTTTTATAACGCGTTGTAAAC 59.627 33.333 37.23 33.29 40.43 2.01
520 1767 6.941802 TCAGTTTTATAACGCGTTGTAAACA 58.058 32.000 37.23 28.19 42.40 2.83
521 1768 7.574496 TCAGTTTTATAACGCGTTGTAAACAT 58.426 30.769 37.23 28.95 42.40 2.71
523 1770 8.144693 CAGTTTTATAACGCGTTGTAAACATTG 58.855 33.333 37.23 30.71 42.40 2.82
524 1771 7.149096 AGTTTTATAACGCGTTGTAAACATTGC 60.149 33.333 37.23 26.93 42.40 3.56
539 1786 4.600576 TGCAGACGGCGTGCAGAA 62.601 61.111 21.19 0.00 45.96 3.02
540 1787 4.077188 GCAGACGGCGTGCAGAAC 62.077 66.667 21.19 0.44 40.86 3.01
541 1788 2.661537 CAGACGGCGTGCAGAACA 60.662 61.111 21.19 0.00 0.00 3.18
543 1790 2.244651 AGACGGCGTGCAGAACAAC 61.245 57.895 21.19 0.00 0.00 3.32
544 1791 2.203015 ACGGCGTGCAGAACAACT 60.203 55.556 13.76 0.00 0.00 3.16
545 1792 2.159272 GACGGCGTGCAGAACAACTC 62.159 60.000 21.19 0.00 0.00 3.01
546 1793 2.243957 CGGCGTGCAGAACAACTCA 61.244 57.895 0.00 0.00 0.00 3.41
547 1794 1.771073 CGGCGTGCAGAACAACTCAA 61.771 55.000 0.00 0.00 0.00 3.02
550 1797 2.543653 GGCGTGCAGAACAACTCAATTT 60.544 45.455 0.00 0.00 0.00 1.82
552 1799 4.286910 GCGTGCAGAACAACTCAATTTTA 58.713 39.130 0.00 0.00 0.00 1.52
554 1801 5.747565 CGTGCAGAACAACTCAATTTTAGA 58.252 37.500 0.00 0.00 0.00 2.10
557 1804 7.305418 CGTGCAGAACAACTCAATTTTAGAAAC 60.305 37.037 0.00 0.00 0.00 2.78
558 1805 6.690957 TGCAGAACAACTCAATTTTAGAAACG 59.309 34.615 0.00 0.00 0.00 3.60
559 1806 6.910433 GCAGAACAACTCAATTTTAGAAACGA 59.090 34.615 0.00 0.00 0.00 3.85
560 1807 7.431084 GCAGAACAACTCAATTTTAGAAACGAA 59.569 33.333 0.00 0.00 0.00 3.85
607 1921 3.250762 GTGTATATCATTGCCGTGCATGT 59.749 43.478 4.96 0.00 38.76 3.21
695 2009 6.912082 TGCATATGACCGATCCAAATTAATG 58.088 36.000 6.97 0.00 0.00 1.90
792 2189 2.352503 AATGGCACGTGCTTGAATTC 57.647 45.000 36.84 20.43 41.70 2.17
800 2197 3.670055 CACGTGCTTGAATTCATTTGGTC 59.330 43.478 9.40 0.00 0.00 4.02
801 2198 3.317711 ACGTGCTTGAATTCATTTGGTCA 59.682 39.130 9.40 0.00 0.00 4.02
802 2199 4.202101 ACGTGCTTGAATTCATTTGGTCAA 60.202 37.500 9.40 0.00 0.00 3.18
803 2200 4.925054 CGTGCTTGAATTCATTTGGTCAAT 59.075 37.500 9.40 0.00 30.06 2.57
804 2201 6.092092 CGTGCTTGAATTCATTTGGTCAATA 58.908 36.000 9.40 0.00 30.06 1.90
805 2202 6.033831 CGTGCTTGAATTCATTTGGTCAATAC 59.966 38.462 9.40 0.00 30.06 1.89
806 2203 6.033831 GTGCTTGAATTCATTTGGTCAATACG 59.966 38.462 9.40 0.00 30.06 3.06
908 2351 6.979238 GCTTAGATCTCGTGTATAAAAGGTGT 59.021 38.462 0.00 0.00 0.00 4.16
925 2368 3.077556 TCCTTCTCCTGCCGGCTC 61.078 66.667 29.70 0.00 0.00 4.70
927 2370 2.739996 CCTTCTCCTGCCGGCTCAT 61.740 63.158 29.70 0.00 0.00 2.90
928 2371 1.227497 CTTCTCCTGCCGGCTCATC 60.227 63.158 29.70 0.00 0.00 2.92
929 2372 2.657102 CTTCTCCTGCCGGCTCATCC 62.657 65.000 29.70 0.00 0.00 3.51
930 2373 3.473647 CTCCTGCCGGCTCATCCA 61.474 66.667 29.70 4.55 34.01 3.41
962 2406 2.009051 CAGCTTGAGACAACACACACA 58.991 47.619 0.00 0.00 0.00 3.72
964 2408 1.737236 GCTTGAGACAACACACACACA 59.263 47.619 0.00 0.00 0.00 3.72
969 2413 2.076100 AGACAACACACACACACACAG 58.924 47.619 0.00 0.00 0.00 3.66
978 2422 0.319728 CACACACACAGAGAGGGAGG 59.680 60.000 0.00 0.00 0.00 4.30
979 2423 0.833834 ACACACACAGAGAGGGAGGG 60.834 60.000 0.00 0.00 0.00 4.30
982 2426 0.040351 CACACAGAGAGGGAGGGAGA 59.960 60.000 0.00 0.00 0.00 3.71
983 2427 0.334676 ACACAGAGAGGGAGGGAGAG 59.665 60.000 0.00 0.00 0.00 3.20
984 2428 0.628522 CACAGAGAGGGAGGGAGAGA 59.371 60.000 0.00 0.00 0.00 3.10
985 2429 0.926293 ACAGAGAGGGAGGGAGAGAG 59.074 60.000 0.00 0.00 0.00 3.20
986 2430 1.221635 CAGAGAGGGAGGGAGAGAGA 58.778 60.000 0.00 0.00 0.00 3.10
992 2447 1.010793 AGGGAGGGAGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
993 2448 1.421646 GGGAGGGAGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
994 2449 2.408565 GGAGGGAGAGAGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
995 2450 2.370189 GGAGGGAGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
998 2453 1.421646 GGAGAGAGAGAGAGAGAGGGG 59.578 61.905 0.00 0.00 0.00 4.79
1019 2474 2.887568 GGCGGCACTGATCACTCG 60.888 66.667 3.07 0.00 0.00 4.18
1029 2484 1.191489 TGATCACTCGGGCCACTTCA 61.191 55.000 4.39 0.00 0.00 3.02
1031 2486 1.194781 ATCACTCGGGCCACTTCAGT 61.195 55.000 4.39 0.00 0.00 3.41
1122 2589 4.856801 GACCATGCCGGGATGCGT 62.857 66.667 29.02 25.77 40.22 5.24
1262 2735 0.879090 CCCAAAACAAGGTACGGCTC 59.121 55.000 0.00 0.00 0.00 4.70
1268 2741 1.141881 CAAGGTACGGCTCAGCGAT 59.858 57.895 0.00 0.00 0.00 4.58
1269 2742 0.384309 CAAGGTACGGCTCAGCGATA 59.616 55.000 0.00 0.00 0.00 2.92
1272 2745 0.596859 GGTACGGCTCAGCGATAACC 60.597 60.000 0.00 0.00 0.00 2.85
1276 2749 0.597637 CGGCTCAGCGATAACCGAAT 60.598 55.000 2.37 0.00 46.71 3.34
1279 2752 2.924290 GGCTCAGCGATAACCGAATATC 59.076 50.000 0.00 0.00 41.76 1.63
1280 2753 3.367498 GGCTCAGCGATAACCGAATATCT 60.367 47.826 0.00 0.00 41.76 1.98
1281 2754 3.854809 GCTCAGCGATAACCGAATATCTC 59.145 47.826 0.00 0.00 41.76 2.75
1332 2805 8.165397 AGTCTATACTCCATTACTCCTACTTCC 58.835 40.741 0.00 0.00 0.00 3.46
1333 2806 8.165397 GTCTATACTCCATTACTCCTACTTCCT 58.835 40.741 0.00 0.00 0.00 3.36
1334 2807 8.384718 TCTATACTCCATTACTCCTACTTCCTC 58.615 40.741 0.00 0.00 0.00 3.71
1335 2808 4.548669 ACTCCATTACTCCTACTTCCTCC 58.451 47.826 0.00 0.00 0.00 4.30
1336 2809 3.563223 TCCATTACTCCTACTTCCTCCG 58.437 50.000 0.00 0.00 0.00 4.63
1337 2810 3.053095 TCCATTACTCCTACTTCCTCCGT 60.053 47.826 0.00 0.00 0.00 4.69
1338 2811 3.705072 CCATTACTCCTACTTCCTCCGTT 59.295 47.826 0.00 0.00 0.00 4.44
1340 2813 5.349809 CATTACTCCTACTTCCTCCGTTTC 58.650 45.833 0.00 0.00 0.00 2.78
1341 2814 2.885616 ACTCCTACTTCCTCCGTTTCA 58.114 47.619 0.00 0.00 0.00 2.69
1342 2815 3.236896 ACTCCTACTTCCTCCGTTTCAA 58.763 45.455 0.00 0.00 0.00 2.69
1345 2818 5.221864 ACTCCTACTTCCTCCGTTTCAAATT 60.222 40.000 0.00 0.00 0.00 1.82
1346 2819 6.013984 ACTCCTACTTCCTCCGTTTCAAATTA 60.014 38.462 0.00 0.00 0.00 1.40
1347 2820 6.168389 TCCTACTTCCTCCGTTTCAAATTAC 58.832 40.000 0.00 0.00 0.00 1.89
1348 2821 6.013984 TCCTACTTCCTCCGTTTCAAATTACT 60.014 38.462 0.00 0.00 0.00 2.24
1349 2822 6.313164 CCTACTTCCTCCGTTTCAAATTACTC 59.687 42.308 0.00 0.00 0.00 2.59
1350 2823 4.689345 ACTTCCTCCGTTTCAAATTACTCG 59.311 41.667 0.00 0.00 0.00 4.18
1351 2824 4.261578 TCCTCCGTTTCAAATTACTCGT 57.738 40.909 0.00 0.00 0.00 4.18
1352 2825 4.240096 TCCTCCGTTTCAAATTACTCGTC 58.760 43.478 0.00 0.00 0.00 4.20
1353 2826 3.060363 CCTCCGTTTCAAATTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
1354 2827 3.641648 TCCGTTTCAAATTACTCGTCGT 58.358 40.909 0.00 0.00 0.00 4.34
1355 2828 3.426191 TCCGTTTCAAATTACTCGTCGTG 59.574 43.478 0.00 0.00 0.00 4.35
1356 2829 3.422603 CCGTTTCAAATTACTCGTCGTGG 60.423 47.826 0.00 0.00 0.00 4.94
1357 2830 3.182972 CGTTTCAAATTACTCGTCGTGGT 59.817 43.478 0.00 0.00 0.00 4.16
1358 2831 4.318263 CGTTTCAAATTACTCGTCGTGGTT 60.318 41.667 0.00 0.00 0.00 3.67
1359 2832 5.107913 CGTTTCAAATTACTCGTCGTGGTTA 60.108 40.000 0.00 0.00 0.00 2.85
1360 2833 5.827568 TTCAAATTACTCGTCGTGGTTAC 57.172 39.130 0.00 0.00 0.00 2.50
1361 2834 5.125100 TCAAATTACTCGTCGTGGTTACT 57.875 39.130 0.00 0.00 0.00 2.24
1362 2835 5.531634 TCAAATTACTCGTCGTGGTTACTT 58.468 37.500 0.00 0.00 0.00 2.24
1363 2836 5.984926 TCAAATTACTCGTCGTGGTTACTTT 59.015 36.000 0.00 0.00 0.00 2.66
1364 2837 6.479660 TCAAATTACTCGTCGTGGTTACTTTT 59.520 34.615 0.00 0.00 0.00 2.27
1365 2838 7.651304 TCAAATTACTCGTCGTGGTTACTTTTA 59.349 33.333 0.00 0.00 0.00 1.52
1366 2839 7.572502 AATTACTCGTCGTGGTTACTTTTAG 57.427 36.000 0.00 0.00 0.00 1.85
1367 2840 4.574599 ACTCGTCGTGGTTACTTTTAGT 57.425 40.909 0.00 0.00 0.00 2.24
1368 2841 4.936891 ACTCGTCGTGGTTACTTTTAGTT 58.063 39.130 0.00 0.00 0.00 2.24
1369 2842 4.978580 ACTCGTCGTGGTTACTTTTAGTTC 59.021 41.667 0.00 0.00 0.00 3.01
1370 2843 4.930963 TCGTCGTGGTTACTTTTAGTTCA 58.069 39.130 0.00 0.00 0.00 3.18
1371 2844 5.347342 TCGTCGTGGTTACTTTTAGTTCAA 58.653 37.500 0.00 0.00 0.00 2.69
1372 2845 5.809562 TCGTCGTGGTTACTTTTAGTTCAAA 59.190 36.000 0.00 0.00 0.00 2.69
1373 2846 6.479660 TCGTCGTGGTTACTTTTAGTTCAAAT 59.520 34.615 0.00 0.00 0.00 2.32
1374 2847 7.011295 TCGTCGTGGTTACTTTTAGTTCAAATT 59.989 33.333 0.00 0.00 0.00 1.82
1375 2848 7.641020 CGTCGTGGTTACTTTTAGTTCAAATTT 59.359 33.333 0.00 0.00 0.00 1.82
1376 2849 8.739461 GTCGTGGTTACTTTTAGTTCAAATTTG 58.261 33.333 12.15 12.15 0.00 2.32
1377 2850 8.675504 TCGTGGTTACTTTTAGTTCAAATTTGA 58.324 29.630 16.91 16.91 34.92 2.69
1378 2851 9.291664 CGTGGTTACTTTTAGTTCAAATTTGAA 57.708 29.630 26.01 26.01 44.31 2.69
1393 2866 8.844441 TCAAATTTGAACTAAAAGTAACCACG 57.156 30.769 18.45 0.00 33.55 4.94
1394 2867 8.675504 TCAAATTTGAACTAAAAGTAACCACGA 58.324 29.630 18.45 0.00 33.55 4.35
1395 2868 8.739461 CAAATTTGAACTAAAAGTAACCACGAC 58.261 33.333 13.08 0.00 0.00 4.34
1396 2869 5.640218 TTGAACTAAAAGTAACCACGACG 57.360 39.130 0.00 0.00 0.00 5.12
1397 2870 4.930963 TGAACTAAAAGTAACCACGACGA 58.069 39.130 0.00 0.00 0.00 4.20
1398 2871 4.977963 TGAACTAAAAGTAACCACGACGAG 59.022 41.667 0.00 0.00 0.00 4.18
1399 2872 4.574599 ACTAAAAGTAACCACGACGAGT 57.425 40.909 0.00 0.00 0.00 4.18
1400 2873 5.689383 ACTAAAAGTAACCACGACGAGTA 57.311 39.130 0.00 0.00 0.00 2.59
1401 2874 6.072112 ACTAAAAGTAACCACGACGAGTAA 57.928 37.500 0.00 0.00 0.00 2.24
1402 2875 6.681777 ACTAAAAGTAACCACGACGAGTAAT 58.318 36.000 0.00 0.00 0.00 1.89
1403 2876 7.147976 ACTAAAAGTAACCACGACGAGTAATT 58.852 34.615 0.00 0.00 0.00 1.40
1404 2877 6.849588 AAAAGTAACCACGACGAGTAATTT 57.150 33.333 0.00 0.00 0.00 1.82
1405 2878 5.834239 AAGTAACCACGACGAGTAATTTG 57.166 39.130 0.00 0.00 0.00 2.32
1406 2879 4.240096 AGTAACCACGACGAGTAATTTGG 58.760 43.478 0.00 0.00 0.00 3.28
1407 2880 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
1408 2881 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
1409 2882 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
1410 2883 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
1411 2884 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
1412 2885 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
1413 2886 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1414 2887 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1415 2888 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1416 2889 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1417 2890 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
1418 2891 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
1419 2892 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
1420 2893 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
1421 2894 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
1422 2895 1.263356 TTGGAACGGAGGGAGTACAG 58.737 55.000 0.00 0.00 0.00 2.74
1467 2954 1.676006 AGCCAACCACGACTTTTTCTG 59.324 47.619 0.00 0.00 0.00 3.02
1468 2955 1.673920 GCCAACCACGACTTTTTCTGA 59.326 47.619 0.00 0.00 0.00 3.27
1502 3010 3.404141 GAGCAGCGGAGAGACGACC 62.404 68.421 0.00 0.00 35.47 4.79
1512 3020 1.606889 GAGACGACCAGGGTGGAGT 60.607 63.158 7.51 0.00 40.96 3.85
1571 3079 2.268920 GGGCAGAAGCACATCCGA 59.731 61.111 0.00 0.00 45.91 4.55
1601 3109 2.457598 CACCCTAGGCACTACTTCAGA 58.542 52.381 2.05 0.00 41.75 3.27
1667 3178 3.933722 CAGCGATCCCCGGAGCAT 61.934 66.667 0.73 0.00 39.04 3.79
1697 3216 2.683867 CCTCTACGTCCTCACCTACTTG 59.316 54.545 0.00 0.00 0.00 3.16
1837 3356 0.101759 TGGCTCAACTACGGCGATAC 59.898 55.000 16.62 0.00 0.00 2.24
1888 3413 1.533033 TCCGAGCTGAGGTGACCAA 60.533 57.895 3.63 0.00 0.00 3.67
1919 3444 2.089349 GCCGTCGTCAGACTTGCTC 61.089 63.158 0.00 0.00 44.93 4.26
1982 3507 4.070552 GACGCCCGTTGCTCCTCT 62.071 66.667 0.00 0.00 38.05 3.69
1983 3508 3.991536 GACGCCCGTTGCTCCTCTC 62.992 68.421 0.00 0.00 38.05 3.20
2009 3534 4.195334 GCATGGGACCCATCGGCT 62.195 66.667 24.08 0.00 43.15 5.52
2029 3554 0.175073 GCCGATTGGGAGTACTTCGT 59.825 55.000 11.74 0.00 38.47 3.85
2039 3564 3.005578 GGGAGTACTTCGTGAACAACTCT 59.994 47.826 14.46 0.00 34.99 3.24
2099 3624 6.647481 ACGTTGTCTTGTAACAATAGCATGTA 59.353 34.615 0.00 0.00 40.96 2.29
2104 3629 7.333423 TGTCTTGTAACAATAGCATGTAACTCC 59.667 37.037 0.00 0.00 32.02 3.85
2110 3635 7.625828 AACAATAGCATGTAACTCCTTTACC 57.374 36.000 0.00 0.00 39.64 2.85
2113 3638 7.834181 ACAATAGCATGTAACTCCTTTACCAAT 59.166 33.333 0.00 0.00 39.64 3.16
2129 3654 4.877378 ACCAATAGTTCCTTGTGTCGTA 57.123 40.909 0.00 0.00 0.00 3.43
2130 3655 4.817517 ACCAATAGTTCCTTGTGTCGTAG 58.182 43.478 0.00 0.00 0.00 3.51
2131 3656 4.282703 ACCAATAGTTCCTTGTGTCGTAGT 59.717 41.667 0.00 0.00 0.00 2.73
2132 3657 5.477984 ACCAATAGTTCCTTGTGTCGTAGTA 59.522 40.000 0.00 0.00 0.00 1.82
2133 3658 5.803967 CCAATAGTTCCTTGTGTCGTAGTAC 59.196 44.000 0.00 0.00 0.00 2.73
2134 3659 6.349944 CCAATAGTTCCTTGTGTCGTAGTACT 60.350 42.308 0.00 0.00 0.00 2.73
2135 3660 7.148188 CCAATAGTTCCTTGTGTCGTAGTACTA 60.148 40.741 0.00 0.00 0.00 1.82
2136 3661 5.619625 AGTTCCTTGTGTCGTAGTACTAC 57.380 43.478 21.06 21.06 0.00 2.73
2147 3672 3.672028 GTAGTACTACGACTGAGGTGC 57.328 52.381 16.96 0.00 0.00 5.01
2148 3673 1.085091 AGTACTACGACTGAGGTGCG 58.915 55.000 0.00 0.00 0.00 5.34
2149 3674 0.801251 GTACTACGACTGAGGTGCGT 59.199 55.000 0.00 0.00 41.58 5.24
2150 3675 2.002586 GTACTACGACTGAGGTGCGTA 58.997 52.381 0.00 0.00 39.24 4.42
2151 3676 1.747709 ACTACGACTGAGGTGCGTAT 58.252 50.000 0.00 0.00 39.42 3.06
2152 3677 1.669779 ACTACGACTGAGGTGCGTATC 59.330 52.381 0.00 0.00 39.42 2.24
2153 3678 1.002684 CTACGACTGAGGTGCGTATCC 60.003 57.143 0.00 0.00 39.42 2.59
2154 3679 0.680280 ACGACTGAGGTGCGTATCCT 60.680 55.000 0.00 0.00 36.37 3.24
2155 3680 0.456221 CGACTGAGGTGCGTATCCTT 59.544 55.000 0.00 0.00 35.20 3.36
2156 3681 1.799181 CGACTGAGGTGCGTATCCTTG 60.799 57.143 0.00 0.00 35.20 3.61
2157 3682 1.476891 GACTGAGGTGCGTATCCTTGA 59.523 52.381 0.00 0.00 35.20 3.02
2158 3683 1.478510 ACTGAGGTGCGTATCCTTGAG 59.521 52.381 0.00 0.53 35.20 3.02
2159 3684 1.751351 CTGAGGTGCGTATCCTTGAGA 59.249 52.381 0.00 0.00 35.20 3.27
2160 3685 1.476891 TGAGGTGCGTATCCTTGAGAC 59.523 52.381 0.00 0.00 35.20 3.36
2161 3686 1.751924 GAGGTGCGTATCCTTGAGACT 59.248 52.381 0.00 0.00 35.20 3.24
2162 3687 1.478510 AGGTGCGTATCCTTGAGACTG 59.521 52.381 0.00 0.00 30.18 3.51
2163 3688 1.476891 GGTGCGTATCCTTGAGACTGA 59.523 52.381 0.00 0.00 0.00 3.41
2164 3689 2.531206 GTGCGTATCCTTGAGACTGAC 58.469 52.381 0.00 0.00 0.00 3.51
2165 3690 2.094700 GTGCGTATCCTTGAGACTGACA 60.095 50.000 0.00 0.00 0.00 3.58
2166 3691 2.164422 TGCGTATCCTTGAGACTGACAG 59.836 50.000 0.00 0.00 0.00 3.51
2167 3692 2.480416 GCGTATCCTTGAGACTGACAGG 60.480 54.545 7.51 0.00 0.00 4.00
2168 3693 2.099921 CGTATCCTTGAGACTGACAGGG 59.900 54.545 7.51 0.00 36.12 4.45
2169 3694 2.334006 ATCCTTGAGACTGACAGGGT 57.666 50.000 7.51 0.00 36.20 4.34
2170 3695 1.342074 TCCTTGAGACTGACAGGGTG 58.658 55.000 7.51 0.00 36.20 4.61
2171 3696 1.051812 CCTTGAGACTGACAGGGTGT 58.948 55.000 7.51 0.00 31.30 4.16
2172 3697 2.158370 TCCTTGAGACTGACAGGGTGTA 60.158 50.000 7.51 0.00 36.20 2.90
2173 3698 2.232452 CCTTGAGACTGACAGGGTGTAG 59.768 54.545 7.51 0.00 31.30 2.74
2174 3699 2.971901 TGAGACTGACAGGGTGTAGA 57.028 50.000 7.51 0.00 0.00 2.59
2175 3700 3.238788 TGAGACTGACAGGGTGTAGAA 57.761 47.619 7.51 0.00 0.00 2.10
2176 3701 3.157881 TGAGACTGACAGGGTGTAGAAG 58.842 50.000 7.51 0.00 0.00 2.85
2177 3702 3.181433 TGAGACTGACAGGGTGTAGAAGA 60.181 47.826 7.51 0.00 0.00 2.87
2178 3703 3.158676 AGACTGACAGGGTGTAGAAGAC 58.841 50.000 7.51 0.00 0.00 3.01
2228 3753 4.342086 TACCCGGGGGCTCAACCT 62.342 66.667 27.92 1.85 39.32 3.50
2239 3764 3.310860 CTCAACCTTAGCCGCCGGT 62.311 63.158 4.45 0.00 0.00 5.28
2240 3765 2.359478 CAACCTTAGCCGCCGGTT 60.359 61.111 4.45 0.00 41.47 4.44
2357 4966 1.577328 ATTTGCTTGGTCTGACGGCG 61.577 55.000 4.80 4.80 0.00 6.46
2527 6113 2.434331 CCCCTTTCGGTGAGGCAA 59.566 61.111 0.00 0.00 32.74 4.52
2536 6122 1.152756 GGTGAGGCAACAAGGTGGT 60.153 57.895 0.00 0.00 41.41 4.16
2560 6146 3.461773 CGTGGGGATCGAGGCTGT 61.462 66.667 0.00 0.00 0.00 4.40
2566 6152 1.596934 GGATCGAGGCTGTGGTTGA 59.403 57.895 0.00 0.00 0.00 3.18
2658 6245 4.365111 TGCTGGGTGGGGTGATGC 62.365 66.667 0.00 0.00 0.00 3.91
2659 6246 4.365111 GCTGGGTGGGGTGATGCA 62.365 66.667 0.00 0.00 0.00 3.96
2773 6360 1.279271 CACCGTGATCCTTTCCCTCTT 59.721 52.381 0.00 0.00 0.00 2.85
2784 6371 0.793617 TTCCCTCTTCCTCCACCTCT 59.206 55.000 0.00 0.00 0.00 3.69
2866 6453 3.685139 TTCTTCTTGAAGACGATGCCT 57.315 42.857 12.06 0.00 0.00 4.75
2885 6472 1.611261 CCTTGGGTCGGTGGAGGTA 60.611 63.158 0.00 0.00 0.00 3.08
2886 6473 1.196104 CCTTGGGTCGGTGGAGGTAA 61.196 60.000 0.00 0.00 0.00 2.85
2950 6537 1.914263 TGGTTCCCCCATTCGACGA 60.914 57.895 0.00 0.00 38.72 4.20
2957 6544 0.744414 CCCCATTCGACGACTTGCAT 60.744 55.000 0.00 0.00 0.00 3.96
2977 6564 2.111999 TAGGCACCACGCTCTTTGCT 62.112 55.000 0.00 0.00 41.91 3.91
2983 6570 0.603707 CCACGCTCTTTGCTGGAGAA 60.604 55.000 5.58 0.00 40.20 2.87
2991 6578 3.668447 TCTTTGCTGGAGAAGATGTGTC 58.332 45.455 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.304293 GCTCAATTTGTCCTAATTTGCGC 59.696 43.478 0.00 0.00 0.00 6.09
13 14 8.947115 GTCTGTACTAAAATAGGCTCAATTTGT 58.053 33.333 0.00 0.00 0.00 2.83
34 35 2.034687 GGCATGGCAGTGGTCTGT 59.965 61.111 15.47 0.00 43.05 3.41
59 60 3.007614 GCTAATACCAAGGGCGGATCTAA 59.992 47.826 0.00 0.00 0.00 2.10
127 128 4.813161 TGGCATTTACAAAAACATGTGGTG 59.187 37.500 0.00 0.18 34.75 4.17
129 130 5.560567 GCTTGGCATTTACAAAAACATGTGG 60.561 40.000 0.00 0.00 34.75 4.17
156 157 4.042271 AGGTTAATTACACCCCAGTTGG 57.958 45.455 11.11 0.00 34.44 3.77
174 176 4.324331 GGAGTTCAATAAGCCCAAGTAGGT 60.324 45.833 0.00 0.00 34.66 3.08
207 209 0.692476 CTTGTCCACTCCATCCACCA 59.308 55.000 0.00 0.00 0.00 4.17
251 359 2.433239 GTGGTGGTGGTGGTATAGTAGG 59.567 54.545 0.00 0.00 0.00 3.18
253 361 2.225573 TGGTGGTGGTGGTGGTATAGTA 60.226 50.000 0.00 0.00 0.00 1.82
255 363 1.065709 GTGGTGGTGGTGGTGGTATAG 60.066 57.143 0.00 0.00 0.00 1.31
256 364 0.985760 GTGGTGGTGGTGGTGGTATA 59.014 55.000 0.00 0.00 0.00 1.47
257 365 1.765074 GTGGTGGTGGTGGTGGTAT 59.235 57.895 0.00 0.00 0.00 2.73
258 366 2.809307 CGTGGTGGTGGTGGTGGTA 61.809 63.158 0.00 0.00 0.00 3.25
260 368 4.947147 CCGTGGTGGTGGTGGTGG 62.947 72.222 0.00 0.00 0.00 4.61
267 375 3.422303 CGTCATGCCGTGGTGGTG 61.422 66.667 0.00 0.00 41.21 4.17
268 376 4.697756 CCGTCATGCCGTGGTGGT 62.698 66.667 0.00 0.00 41.21 4.16
271 379 1.980232 TACTCCGTCATGCCGTGGT 60.980 57.895 0.00 0.00 0.00 4.16
273 381 0.179111 ATGTACTCCGTCATGCCGTG 60.179 55.000 0.00 0.00 0.00 4.94
274 382 0.179111 CATGTACTCCGTCATGCCGT 60.179 55.000 0.00 0.00 35.72 5.68
275 383 0.875908 CCATGTACTCCGTCATGCCG 60.876 60.000 0.00 0.00 39.74 5.69
276 384 0.464036 TCCATGTACTCCGTCATGCC 59.536 55.000 0.00 0.00 39.74 4.40
411 1583 7.556275 TCCTACCTTAATACAAATGAAAGCAGG 59.444 37.037 0.00 0.00 0.00 4.85
475 1722 7.008941 ACTGAACAGAGGGAGTAGTAAAACTA 58.991 38.462 8.87 0.00 0.00 2.24
477 1724 6.099159 ACTGAACAGAGGGAGTAGTAAAAC 57.901 41.667 8.87 0.00 0.00 2.43
480 1727 6.742559 AAAACTGAACAGAGGGAGTAGTAA 57.257 37.500 8.87 0.00 0.00 2.24
483 1730 7.488471 CGTTATAAAACTGAACAGAGGGAGTAG 59.512 40.741 8.87 0.00 33.15 2.57
484 1731 7.318141 CGTTATAAAACTGAACAGAGGGAGTA 58.682 38.462 8.87 0.00 33.15 2.59
485 1732 6.164176 CGTTATAAAACTGAACAGAGGGAGT 58.836 40.000 8.87 0.00 33.15 3.85
486 1733 5.063564 GCGTTATAAAACTGAACAGAGGGAG 59.936 44.000 8.87 0.00 33.15 4.30
488 1735 4.201685 CGCGTTATAAAACTGAACAGAGGG 60.202 45.833 8.87 0.00 33.15 4.30
489 1736 4.387862 ACGCGTTATAAAACTGAACAGAGG 59.612 41.667 5.58 0.00 33.15 3.69
490 1737 5.511088 ACGCGTTATAAAACTGAACAGAG 57.489 39.130 5.58 0.00 33.15 3.35
491 1738 5.234757 ACAACGCGTTATAAAACTGAACAGA 59.765 36.000 26.11 0.00 33.15 3.41
492 1739 5.437263 ACAACGCGTTATAAAACTGAACAG 58.563 37.500 26.11 9.37 33.15 3.16
493 1740 5.406767 ACAACGCGTTATAAAACTGAACA 57.593 34.783 26.11 0.00 33.15 3.18
494 1741 7.372918 TGTTTACAACGCGTTATAAAACTGAAC 59.627 33.333 30.46 20.49 33.15 3.18
495 1742 7.404985 TGTTTACAACGCGTTATAAAACTGAA 58.595 30.769 30.46 18.15 33.15 3.02
497 1744 7.769719 ATGTTTACAACGCGTTATAAAACTG 57.230 32.000 30.46 17.59 33.15 3.16
499 1746 6.938436 GCAATGTTTACAACGCGTTATAAAAC 59.062 34.615 30.46 30.03 0.00 2.43
500 1747 6.635641 TGCAATGTTTACAACGCGTTATAAAA 59.364 30.769 30.46 23.13 31.97 1.52
502 1749 5.686834 TGCAATGTTTACAACGCGTTATAA 58.313 33.333 26.11 21.82 31.97 0.98
503 1750 5.120363 TCTGCAATGTTTACAACGCGTTATA 59.880 36.000 26.11 16.22 31.97 0.98
504 1751 4.083749 TCTGCAATGTTTACAACGCGTTAT 60.084 37.500 26.11 17.54 31.97 1.89
505 1752 3.247886 TCTGCAATGTTTACAACGCGTTA 59.752 39.130 26.11 7.37 31.97 3.18
506 1753 2.032302 TCTGCAATGTTTACAACGCGTT 59.968 40.909 20.79 20.79 31.97 4.84
507 1754 1.600013 TCTGCAATGTTTACAACGCGT 59.400 42.857 5.58 5.58 31.97 6.01
509 1756 1.969256 CGTCTGCAATGTTTACAACGC 59.031 47.619 0.00 0.00 0.00 4.84
510 1757 2.570169 CCGTCTGCAATGTTTACAACG 58.430 47.619 0.00 0.00 0.00 4.10
511 1758 2.315901 GCCGTCTGCAATGTTTACAAC 58.684 47.619 0.00 0.00 40.77 3.32
514 1761 0.515564 ACGCCGTCTGCAATGTTTAC 59.484 50.000 0.00 0.00 41.33 2.01
515 1762 0.515127 CACGCCGTCTGCAATGTTTA 59.485 50.000 0.00 0.00 41.33 2.01
516 1763 1.282570 CACGCCGTCTGCAATGTTT 59.717 52.632 0.00 0.00 41.33 2.83
518 1765 3.726517 GCACGCCGTCTGCAATGT 61.727 61.111 0.00 0.00 41.33 2.71
519 1766 3.656243 CTGCACGCCGTCTGCAATG 62.656 63.158 3.94 0.00 43.96 2.82
520 1767 3.425713 CTGCACGCCGTCTGCAAT 61.426 61.111 3.94 0.00 43.96 3.56
521 1768 4.600576 TCTGCACGCCGTCTGCAA 62.601 61.111 3.94 0.00 43.96 4.08
523 1770 4.077188 GTTCTGCACGCCGTCTGC 62.077 66.667 0.00 0.00 35.03 4.26
524 1771 2.243957 TTGTTCTGCACGCCGTCTG 61.244 57.895 0.00 0.00 0.00 3.51
525 1772 2.108157 TTGTTCTGCACGCCGTCT 59.892 55.556 0.00 0.00 0.00 4.18
527 1774 2.203015 AGTTGTTCTGCACGCCGT 60.203 55.556 0.00 0.00 0.00 5.68
528 1775 1.771073 TTGAGTTGTTCTGCACGCCG 61.771 55.000 0.00 0.00 0.00 6.46
530 1777 2.405892 AATTGAGTTGTTCTGCACGC 57.594 45.000 0.00 0.00 0.00 5.34
532 1779 7.305418 CGTTTCTAAAATTGAGTTGTTCTGCAC 60.305 37.037 0.00 0.00 0.00 4.57
534 1781 6.910433 TCGTTTCTAAAATTGAGTTGTTCTGC 59.090 34.615 0.00 0.00 0.00 4.26
535 1782 8.835467 TTCGTTTCTAAAATTGAGTTGTTCTG 57.165 30.769 0.00 0.00 0.00 3.02
568 1815 9.634021 TGATATACACTACTCTCTCTGTTCATT 57.366 33.333 0.00 0.00 0.00 2.57
569 1816 9.806448 ATGATATACACTACTCTCTCTGTTCAT 57.194 33.333 0.00 0.00 0.00 2.57
570 1817 9.634021 AATGATATACACTACTCTCTCTGTTCA 57.366 33.333 0.00 0.00 0.00 3.18
572 1819 8.356657 GCAATGATATACACTACTCTCTCTGTT 58.643 37.037 0.00 0.00 0.00 3.16
575 1822 6.150307 CGGCAATGATATACACTACTCTCTCT 59.850 42.308 0.00 0.00 0.00 3.10
576 1823 6.072397 ACGGCAATGATATACACTACTCTCTC 60.072 42.308 0.00 0.00 0.00 3.20
579 1826 5.773575 CACGGCAATGATATACACTACTCT 58.226 41.667 0.00 0.00 0.00 3.24
580 1827 4.386049 GCACGGCAATGATATACACTACTC 59.614 45.833 0.00 0.00 0.00 2.59
581 1828 4.202212 TGCACGGCAATGATATACACTACT 60.202 41.667 0.00 0.00 34.76 2.57
582 1829 4.055360 TGCACGGCAATGATATACACTAC 58.945 43.478 0.00 0.00 34.76 2.73
617 1931 4.630644 ATATAGTCCTTGAGGGCATGTG 57.369 45.455 4.21 0.00 43.78 3.21
618 1932 6.959606 ATTATATAGTCCTTGAGGGCATGT 57.040 37.500 4.21 0.00 43.78 3.21
656 1970 2.644418 GCATCAAGTTGCACGGCA 59.356 55.556 0.00 0.00 42.31 5.69
695 2009 0.526211 GAAAGATCCCCCGTTGTTGC 59.474 55.000 0.00 0.00 0.00 4.17
735 2049 2.997897 GGGTCACTCGCTCACCCT 60.998 66.667 0.00 0.00 45.81 4.34
766 2080 1.819928 AGCACGTGCCATTTCATACA 58.180 45.000 35.51 0.00 43.38 2.29
767 2081 2.161410 TCAAGCACGTGCCATTTCATAC 59.839 45.455 35.51 5.62 43.38 2.39
768 2082 2.431454 TCAAGCACGTGCCATTTCATA 58.569 42.857 35.51 10.97 43.38 2.15
769 2083 1.246649 TCAAGCACGTGCCATTTCAT 58.753 45.000 35.51 13.87 43.38 2.57
770 2084 1.028130 TTCAAGCACGTGCCATTTCA 58.972 45.000 35.51 8.88 43.38 2.69
771 2085 2.352503 ATTCAAGCACGTGCCATTTC 57.647 45.000 35.51 8.79 43.38 2.17
772 2086 2.035704 TGAATTCAAGCACGTGCCATTT 59.964 40.909 35.51 21.43 43.38 2.32
773 2087 1.612950 TGAATTCAAGCACGTGCCATT 59.387 42.857 35.51 26.09 43.38 3.16
774 2088 1.246649 TGAATTCAAGCACGTGCCAT 58.753 45.000 35.51 22.88 43.38 4.40
775 2089 1.246649 ATGAATTCAAGCACGTGCCA 58.753 45.000 35.51 24.11 43.38 4.92
776 2090 2.352503 AATGAATTCAAGCACGTGCC 57.647 45.000 35.51 19.24 43.38 5.01
805 2202 2.287427 CCCTGAGGTACTACGTATTGCG 60.287 54.545 0.00 0.00 41.55 4.85
806 2203 2.035576 CCCCTGAGGTACTACGTATTGC 59.964 54.545 0.00 0.00 41.55 3.56
840 2259 4.744137 GTGTGTGAGCAATAGATCTAGCTG 59.256 45.833 18.42 13.72 37.48 4.24
908 2351 3.077556 GAGCCGGCAGGAGAAGGA 61.078 66.667 31.54 0.00 41.02 3.36
925 2368 2.335092 CTGCTAGCTGGGGGTGGATG 62.335 65.000 17.23 0.00 0.00 3.51
927 2370 2.688666 CTGCTAGCTGGGGGTGGA 60.689 66.667 17.23 0.00 0.00 4.02
928 2371 4.496336 GCTGCTAGCTGGGGGTGG 62.496 72.222 21.46 1.55 38.45 4.61
962 2406 0.252012 CTCCCTCCCTCTCTGTGTGT 60.252 60.000 0.00 0.00 0.00 3.72
964 2408 0.334676 CTCTCCCTCCCTCTCTGTGT 59.665 60.000 0.00 0.00 0.00 3.72
969 2413 1.421646 CTCTCTCTCTCCCTCCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
978 2422 1.421646 CCCCTCTCTCTCTCTCTCTCC 59.578 61.905 0.00 0.00 0.00 3.71
979 2423 1.202818 GCCCCTCTCTCTCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
982 2426 1.133388 CATGCCCCTCTCTCTCTCTCT 60.133 57.143 0.00 0.00 0.00 3.10
983 2427 1.331214 CATGCCCCTCTCTCTCTCTC 58.669 60.000 0.00 0.00 0.00 3.20
984 2428 0.105555 CCATGCCCCTCTCTCTCTCT 60.106 60.000 0.00 0.00 0.00 3.10
985 2429 1.757423 GCCATGCCCCTCTCTCTCTC 61.757 65.000 0.00 0.00 0.00 3.20
986 2430 1.765657 GCCATGCCCCTCTCTCTCT 60.766 63.158 0.00 0.00 0.00 3.10
998 2453 2.825387 TGATCAGTGCCGCCATGC 60.825 61.111 0.00 0.00 0.00 4.06
1012 2467 1.194781 ACTGAAGTGGCCCGAGTGAT 61.195 55.000 0.00 0.00 0.00 3.06
1134 2601 1.746615 GCAGCAGCGGAGGATTTCA 60.747 57.895 0.00 0.00 0.00 2.69
1273 2746 3.637998 TGGTTACCGCTCGAGATATTC 57.362 47.619 18.75 0.00 0.00 1.75
1276 2749 3.514645 GTTTTGGTTACCGCTCGAGATA 58.485 45.455 18.75 1.69 0.00 1.98
1279 2752 0.794473 GGTTTTGGTTACCGCTCGAG 59.206 55.000 8.45 8.45 0.00 4.04
1280 2753 0.106335 TGGTTTTGGTTACCGCTCGA 59.894 50.000 0.00 0.00 38.55 4.04
1281 2754 1.135803 CATGGTTTTGGTTACCGCTCG 60.136 52.381 0.00 0.00 38.55 5.03
1282 2755 1.402325 GCATGGTTTTGGTTACCGCTC 60.402 52.381 0.00 0.00 38.55 5.03
1283 2756 0.601057 GCATGGTTTTGGTTACCGCT 59.399 50.000 0.00 0.00 38.55 5.52
1284 2757 0.601057 AGCATGGTTTTGGTTACCGC 59.399 50.000 0.00 0.00 38.55 5.68
1285 2758 4.879545 ACTATAGCATGGTTTTGGTTACCG 59.120 41.667 1.12 0.00 38.55 4.02
1329 2802 4.634199 ACGAGTAATTTGAAACGGAGGAA 58.366 39.130 0.00 0.00 0.00 3.36
1331 2804 3.060363 CGACGAGTAATTTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
1332 2805 3.671928 ACGACGAGTAATTTGAAACGGAG 59.328 43.478 0.00 0.00 0.00 4.63
1333 2806 3.426191 CACGACGAGTAATTTGAAACGGA 59.574 43.478 0.00 0.00 0.00 4.69
1334 2807 3.422603 CCACGACGAGTAATTTGAAACGG 60.423 47.826 0.00 0.00 0.00 4.44
1335 2808 3.182972 ACCACGACGAGTAATTTGAAACG 59.817 43.478 0.00 0.00 0.00 3.60
1336 2809 4.720530 ACCACGACGAGTAATTTGAAAC 57.279 40.909 0.00 0.00 0.00 2.78
1337 2810 5.984926 AGTAACCACGACGAGTAATTTGAAA 59.015 36.000 0.00 0.00 0.00 2.69
1338 2811 5.531634 AGTAACCACGACGAGTAATTTGAA 58.468 37.500 0.00 0.00 0.00 2.69
1340 2813 5.834239 AAGTAACCACGACGAGTAATTTG 57.166 39.130 0.00 0.00 0.00 2.32
1341 2814 6.849588 AAAAGTAACCACGACGAGTAATTT 57.150 33.333 0.00 0.00 0.00 1.82
1342 2815 7.147976 ACTAAAAGTAACCACGACGAGTAATT 58.852 34.615 0.00 0.00 0.00 1.40
1345 2818 5.689383 ACTAAAAGTAACCACGACGAGTA 57.311 39.130 0.00 0.00 0.00 2.59
1346 2819 4.574599 ACTAAAAGTAACCACGACGAGT 57.425 40.909 0.00 0.00 0.00 4.18
1347 2820 4.977963 TGAACTAAAAGTAACCACGACGAG 59.022 41.667 0.00 0.00 0.00 4.18
1348 2821 4.930963 TGAACTAAAAGTAACCACGACGA 58.069 39.130 0.00 0.00 0.00 4.20
1349 2822 5.640218 TTGAACTAAAAGTAACCACGACG 57.360 39.130 0.00 0.00 0.00 5.12
1350 2823 8.739461 CAAATTTGAACTAAAAGTAACCACGAC 58.261 33.333 13.08 0.00 0.00 4.34
1351 2824 8.675504 TCAAATTTGAACTAAAAGTAACCACGA 58.324 29.630 18.45 0.00 33.55 4.35
1352 2825 8.844441 TCAAATTTGAACTAAAAGTAACCACG 57.156 30.769 18.45 0.00 33.55 4.94
1367 2840 9.291664 CGTGGTTACTTTTAGTTCAAATTTGAA 57.708 29.630 26.01 26.01 44.31 2.69
1368 2841 8.675504 TCGTGGTTACTTTTAGTTCAAATTTGA 58.324 29.630 16.91 16.91 34.92 2.69
1369 2842 8.739461 GTCGTGGTTACTTTTAGTTCAAATTTG 58.261 33.333 12.15 12.15 0.00 2.32
1370 2843 7.641020 CGTCGTGGTTACTTTTAGTTCAAATTT 59.359 33.333 0.00 0.00 0.00 1.82
1371 2844 7.011295 TCGTCGTGGTTACTTTTAGTTCAAATT 59.989 33.333 0.00 0.00 0.00 1.82
1372 2845 6.479660 TCGTCGTGGTTACTTTTAGTTCAAAT 59.520 34.615 0.00 0.00 0.00 2.32
1373 2846 5.809562 TCGTCGTGGTTACTTTTAGTTCAAA 59.190 36.000 0.00 0.00 0.00 2.69
1374 2847 5.347342 TCGTCGTGGTTACTTTTAGTTCAA 58.653 37.500 0.00 0.00 0.00 2.69
1375 2848 4.930963 TCGTCGTGGTTACTTTTAGTTCA 58.069 39.130 0.00 0.00 0.00 3.18
1376 2849 4.978580 ACTCGTCGTGGTTACTTTTAGTTC 59.021 41.667 0.00 0.00 0.00 3.01
1377 2850 4.936891 ACTCGTCGTGGTTACTTTTAGTT 58.063 39.130 0.00 0.00 0.00 2.24
1378 2851 4.574599 ACTCGTCGTGGTTACTTTTAGT 57.425 40.909 0.00 0.00 0.00 2.24
1379 2852 7.572502 AATTACTCGTCGTGGTTACTTTTAG 57.427 36.000 0.00 0.00 0.00 1.85
1380 2853 7.095691 CCAAATTACTCGTCGTGGTTACTTTTA 60.096 37.037 0.00 0.00 0.00 1.52
1381 2854 6.293027 CCAAATTACTCGTCGTGGTTACTTTT 60.293 38.462 0.00 0.00 0.00 2.27
1382 2855 5.178067 CCAAATTACTCGTCGTGGTTACTTT 59.822 40.000 0.00 0.00 0.00 2.66
1383 2856 4.687483 CCAAATTACTCGTCGTGGTTACTT 59.313 41.667 0.00 0.00 0.00 2.24
1384 2857 4.022068 TCCAAATTACTCGTCGTGGTTACT 60.022 41.667 0.00 0.00 0.00 2.24
1385 2858 4.236935 TCCAAATTACTCGTCGTGGTTAC 58.763 43.478 0.00 0.00 0.00 2.50
1386 2859 4.517952 TCCAAATTACTCGTCGTGGTTA 57.482 40.909 0.00 0.00 0.00 2.85
1387 2860 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
1388 2861 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
1389 2862 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
1390 2863 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
1391 2864 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
1392 2865 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1393 2866 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1394 2867 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
1395 2868 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1396 2869 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1397 2870 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1398 2871 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1399 2872 3.839490 TGTACTCCCTCCGTTCCAAATTA 59.161 43.478 0.00 0.00 0.00 1.40
1400 2873 2.640826 TGTACTCCCTCCGTTCCAAATT 59.359 45.455 0.00 0.00 0.00 1.82
1401 2874 2.236395 CTGTACTCCCTCCGTTCCAAAT 59.764 50.000 0.00 0.00 0.00 2.32
1402 2875 1.621814 CTGTACTCCCTCCGTTCCAAA 59.378 52.381 0.00 0.00 0.00 3.28
1403 2876 1.263356 CTGTACTCCCTCCGTTCCAA 58.737 55.000 0.00 0.00 0.00 3.53
1404 2877 0.113776 ACTGTACTCCCTCCGTTCCA 59.886 55.000 0.00 0.00 0.00 3.53
1405 2878 0.531200 CACTGTACTCCCTCCGTTCC 59.469 60.000 0.00 0.00 0.00 3.62
1406 2879 1.542492 TCACTGTACTCCCTCCGTTC 58.458 55.000 0.00 0.00 0.00 3.95
1407 2880 2.005370 TTCACTGTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
1408 2881 2.233305 ATTCACTGTACTCCCTCCGT 57.767 50.000 0.00 0.00 0.00 4.69
1409 2882 3.446161 TGTTATTCACTGTACTCCCTCCG 59.554 47.826 0.00 0.00 0.00 4.63
1410 2883 5.615925 ATGTTATTCACTGTACTCCCTCC 57.384 43.478 0.00 0.00 0.00 4.30
1411 2884 6.979238 GTGTATGTTATTCACTGTACTCCCTC 59.021 42.308 0.00 0.00 0.00 4.30
1412 2885 6.405508 CGTGTATGTTATTCACTGTACTCCCT 60.406 42.308 0.00 0.00 0.00 4.20
1413 2886 5.747197 CGTGTATGTTATTCACTGTACTCCC 59.253 44.000 0.00 0.00 0.00 4.30
1414 2887 6.252869 CACGTGTATGTTATTCACTGTACTCC 59.747 42.308 7.58 0.00 0.00 3.85
1415 2888 7.008086 GTCACGTGTATGTTATTCACTGTACTC 59.992 40.741 16.51 0.00 0.00 2.59
1416 2889 6.805271 GTCACGTGTATGTTATTCACTGTACT 59.195 38.462 16.51 0.00 0.00 2.73
1417 2890 6.805271 AGTCACGTGTATGTTATTCACTGTAC 59.195 38.462 16.51 0.00 0.00 2.90
1418 2891 6.916440 AGTCACGTGTATGTTATTCACTGTA 58.084 36.000 16.51 0.00 0.00 2.74
1419 2892 5.779922 AGTCACGTGTATGTTATTCACTGT 58.220 37.500 16.51 0.00 0.00 3.55
1420 2893 7.461026 CGTTAGTCACGTGTATGTTATTCACTG 60.461 40.741 16.51 0.00 44.49 3.66
1421 2894 6.525628 CGTTAGTCACGTGTATGTTATTCACT 59.474 38.462 16.51 9.73 44.49 3.41
1422 2895 6.680126 CGTTAGTCACGTGTATGTTATTCAC 58.320 40.000 16.51 1.84 44.49 3.18
1502 3010 2.046892 CGCTTCCACTCCACCCTG 60.047 66.667 0.00 0.00 0.00 4.45
1512 3020 2.747686 GTCCCAGTTCCGCTTCCA 59.252 61.111 0.00 0.00 0.00 3.53
1571 3079 3.077556 CTAGGGTGGTCGCTGCCT 61.078 66.667 0.00 0.00 37.93 4.75
1586 3094 1.202417 GCGCATCTGAAGTAGTGCCTA 60.202 52.381 0.30 0.00 32.99 3.93
1638 3149 2.355445 GATCGCTGGACATGCCTCGA 62.355 60.000 17.98 17.98 42.92 4.04
1667 3178 1.305623 GACGTAGAGGGGAGGGTCA 59.694 63.158 0.00 0.00 0.00 4.02
1741 3260 1.800586 GCTGCATCTTGACGTTCTTCA 59.199 47.619 0.00 0.00 0.00 3.02
1746 3265 2.680913 GCGGCTGCATCTTGACGTT 61.681 57.895 14.08 0.00 42.15 3.99
1800 3319 3.182590 AACAAGGAGAGCGGCTGCA 62.183 57.895 21.93 0.00 46.23 4.41
1811 3330 1.270625 CCGTAGTTGAGCCAACAAGGA 60.271 52.381 16.93 1.33 45.66 3.36
1837 3356 0.764890 TGAGGTCTCACCCCAAACAG 59.235 55.000 0.00 0.00 39.75 3.16
1888 3413 1.213094 CGACGGCGTTGACTCAACTT 61.213 55.000 22.58 2.08 41.62 2.66
1937 3462 2.125391 GAGCTCATCTGCGCCACA 60.125 61.111 9.40 0.00 38.13 4.17
1947 3472 2.492090 GTCTGCCGACGAGCTCAT 59.508 61.111 15.40 0.00 0.00 2.90
1976 3501 3.478274 GCAGCAGGGGGAGAGGAG 61.478 72.222 0.00 0.00 0.00 3.69
2009 3534 0.174845 CGAAGTACTCCCAATCGGCA 59.825 55.000 6.09 0.00 0.00 5.69
2015 3540 3.133362 AGTTGTTCACGAAGTACTCCCAA 59.867 43.478 0.00 0.00 41.61 4.12
2021 3546 3.424529 CCGAAGAGTTGTTCACGAAGTAC 59.575 47.826 0.00 0.00 41.61 2.73
2029 3554 7.608153 TCTAACATAATCCGAAGAGTTGTTCA 58.392 34.615 0.00 0.00 30.10 3.18
2039 3564 7.066645 TCGAAGAACTCTCTAACATAATCCGAA 59.933 37.037 0.00 0.00 0.00 4.30
2077 3602 8.615878 AGTTACATGCTATTGTTACAAGACAA 57.384 30.769 3.63 0.00 43.08 3.18
2087 3612 6.717289 TGGTAAAGGAGTTACATGCTATTGT 58.283 36.000 0.00 0.00 43.48 2.71
2099 3624 6.715264 CACAAGGAACTATTGGTAAAGGAGTT 59.285 38.462 0.00 0.00 38.49 3.01
2104 3629 5.699458 ACGACACAAGGAACTATTGGTAAAG 59.301 40.000 0.00 0.00 38.49 1.85
2110 3635 6.618811 AGTACTACGACACAAGGAACTATTG 58.381 40.000 0.00 0.00 38.49 1.90
2113 3638 6.727824 GTAGTACTACGACACAAGGAACTA 57.272 41.667 16.96 0.00 38.49 2.24
2129 3654 1.085091 CGCACCTCAGTCGTAGTACT 58.915 55.000 0.00 0.00 0.00 2.73
2130 3655 0.801251 ACGCACCTCAGTCGTAGTAC 59.199 55.000 0.00 0.00 34.41 2.73
2131 3656 2.385013 TACGCACCTCAGTCGTAGTA 57.615 50.000 0.00 0.00 37.61 1.82
2132 3657 1.669779 GATACGCACCTCAGTCGTAGT 59.330 52.381 0.00 0.00 41.17 2.73
2133 3658 1.002684 GGATACGCACCTCAGTCGTAG 60.003 57.143 0.00 0.00 41.17 3.51
2134 3659 1.019673 GGATACGCACCTCAGTCGTA 58.980 55.000 0.00 0.00 41.92 3.43
2135 3660 0.680280 AGGATACGCACCTCAGTCGT 60.680 55.000 0.00 0.00 46.39 4.34
2136 3661 0.456221 AAGGATACGCACCTCAGTCG 59.544 55.000 0.00 0.00 46.39 4.18
2137 3662 1.476891 TCAAGGATACGCACCTCAGTC 59.523 52.381 0.00 0.00 46.39 3.51
2138 3663 1.478510 CTCAAGGATACGCACCTCAGT 59.521 52.381 0.00 0.00 46.39 3.41
2139 3664 1.751351 TCTCAAGGATACGCACCTCAG 59.249 52.381 0.00 0.00 46.39 3.35
2140 3665 1.476891 GTCTCAAGGATACGCACCTCA 59.523 52.381 0.00 0.00 46.39 3.86
2141 3666 1.751924 AGTCTCAAGGATACGCACCTC 59.248 52.381 0.00 0.00 46.39 3.85
2142 3667 1.478510 CAGTCTCAAGGATACGCACCT 59.521 52.381 0.00 0.00 46.39 4.00
2143 3668 1.476891 TCAGTCTCAAGGATACGCACC 59.523 52.381 0.00 0.00 46.39 5.01
2144 3669 2.094700 TGTCAGTCTCAAGGATACGCAC 60.095 50.000 0.00 0.00 46.39 5.34
2145 3670 2.164422 CTGTCAGTCTCAAGGATACGCA 59.836 50.000 0.00 0.00 46.39 5.24
2146 3671 2.480416 CCTGTCAGTCTCAAGGATACGC 60.480 54.545 0.00 0.00 46.39 4.42
2147 3672 2.099921 CCCTGTCAGTCTCAAGGATACG 59.900 54.545 0.00 0.00 46.39 3.06
2148 3673 3.100671 ACCCTGTCAGTCTCAAGGATAC 58.899 50.000 0.00 0.00 0.00 2.24
2149 3674 3.099905 CACCCTGTCAGTCTCAAGGATA 58.900 50.000 0.00 0.00 0.00 2.59
2150 3675 1.905215 CACCCTGTCAGTCTCAAGGAT 59.095 52.381 0.00 0.00 0.00 3.24
2151 3676 1.342074 CACCCTGTCAGTCTCAAGGA 58.658 55.000 0.00 0.00 0.00 3.36
2152 3677 1.051812 ACACCCTGTCAGTCTCAAGG 58.948 55.000 0.00 0.00 0.00 3.61
2153 3678 3.157881 TCTACACCCTGTCAGTCTCAAG 58.842 50.000 0.00 0.00 0.00 3.02
2154 3679 3.238788 TCTACACCCTGTCAGTCTCAA 57.761 47.619 0.00 0.00 0.00 3.02
2155 3680 2.971901 TCTACACCCTGTCAGTCTCA 57.028 50.000 0.00 0.00 0.00 3.27
2156 3681 3.191791 GTCTTCTACACCCTGTCAGTCTC 59.808 52.174 0.00 0.00 0.00 3.36
2157 3682 3.158676 GTCTTCTACACCCTGTCAGTCT 58.841 50.000 0.00 0.00 0.00 3.24
2158 3683 2.231721 GGTCTTCTACACCCTGTCAGTC 59.768 54.545 0.00 0.00 0.00 3.51
2159 3684 2.249139 GGTCTTCTACACCCTGTCAGT 58.751 52.381 0.00 0.00 0.00 3.41
2168 3693 1.007359 AGGGAGAGGGGTCTTCTACAC 59.993 57.143 0.00 0.00 0.00 2.90
2169 3694 1.288335 GAGGGAGAGGGGTCTTCTACA 59.712 57.143 0.00 0.00 0.00 2.74
2170 3695 1.571936 AGAGGGAGAGGGGTCTTCTAC 59.428 57.143 0.00 0.00 0.00 2.59
2171 3696 1.854280 GAGAGGGAGAGGGGTCTTCTA 59.146 57.143 0.00 0.00 0.00 2.10
2172 3697 0.634465 GAGAGGGAGAGGGGTCTTCT 59.366 60.000 0.00 0.00 0.00 2.85
2173 3698 0.397957 GGAGAGGGAGAGGGGTCTTC 60.398 65.000 0.00 0.00 0.00 2.87
2174 3699 1.707200 GGAGAGGGAGAGGGGTCTT 59.293 63.158 0.00 0.00 0.00 3.01
2175 3700 2.329399 GGGAGAGGGAGAGGGGTCT 61.329 68.421 0.00 0.00 0.00 3.85
2176 3701 2.284151 GGGAGAGGGAGAGGGGTC 59.716 72.222 0.00 0.00 0.00 4.46
2177 3702 3.756783 CGGGAGAGGGAGAGGGGT 61.757 72.222 0.00 0.00 0.00 4.95
2178 3703 3.756783 ACGGGAGAGGGAGAGGGG 61.757 72.222 0.00 0.00 0.00 4.79
2208 3733 3.006728 TTGAGCCCCCGGGTAGTG 61.007 66.667 21.85 3.10 37.65 2.74
2209 3734 3.007323 GTTGAGCCCCCGGGTAGT 61.007 66.667 21.85 1.79 37.65 2.73
2211 3736 2.474133 TAAGGTTGAGCCCCCGGGTA 62.474 60.000 21.85 0.00 38.26 3.69
2215 3740 2.124695 GCTAAGGTTGAGCCCCCG 60.125 66.667 0.00 0.00 38.26 5.73
2239 3764 0.705253 AGGAGAAGAGGAGACGGGAA 59.295 55.000 0.00 0.00 0.00 3.97
2240 3765 0.033991 CAGGAGAAGAGGAGACGGGA 60.034 60.000 0.00 0.00 0.00 5.14
2247 3772 1.002274 GGAGGGCAGGAGAAGAGGA 59.998 63.158 0.00 0.00 0.00 3.71
2393 5011 4.875713 CACCGCCCCATAGCCACC 62.876 72.222 0.00 0.00 0.00 4.61
2527 6113 1.379309 ACGTTTGCCACCACCTTGT 60.379 52.632 0.00 0.00 0.00 3.16
2536 6122 2.359354 CGATCCCCACGTTTGCCA 60.359 61.111 0.00 0.00 0.00 4.92
2658 6245 1.450312 GATCCAGAACCCACGCCTG 60.450 63.158 0.00 0.00 0.00 4.85
2659 6246 2.990479 GATCCAGAACCCACGCCT 59.010 61.111 0.00 0.00 0.00 5.52
2755 6342 1.134371 GGAAGAGGGAAAGGATCACGG 60.134 57.143 0.00 0.00 36.19 4.94
2773 6360 1.229209 GGGTCACAGAGGTGGAGGA 60.229 63.158 0.00 0.00 45.32 3.71
2784 6371 2.112297 GCTTTCACCCGGGTCACA 59.888 61.111 27.51 1.73 0.00 3.58
2860 6447 2.190578 CCGACCCAAGGAGGCATC 59.809 66.667 0.00 0.00 35.39 3.91
2861 6448 2.610859 ACCGACCCAAGGAGGCAT 60.611 61.111 0.00 0.00 35.39 4.40
2862 6449 3.636231 CACCGACCCAAGGAGGCA 61.636 66.667 0.00 0.00 35.39 4.75
2866 6453 2.096707 TACCTCCACCGACCCAAGGA 62.097 60.000 0.00 0.00 0.00 3.36
2885 6472 1.818642 GCTCAGAAGCTCACACCATT 58.181 50.000 0.00 0.00 45.55 3.16
2886 6473 3.547567 GCTCAGAAGCTCACACCAT 57.452 52.632 0.00 0.00 45.55 3.55
2907 6494 3.261981 AGATAATTGACGACCCACCAC 57.738 47.619 0.00 0.00 0.00 4.16
2908 6495 3.262151 TGAAGATAATTGACGACCCACCA 59.738 43.478 0.00 0.00 0.00 4.17
2909 6496 3.869065 TGAAGATAATTGACGACCCACC 58.131 45.455 0.00 0.00 0.00 4.61
2977 6564 0.608130 CCACCGACACATCTTCTCCA 59.392 55.000 0.00 0.00 0.00 3.86
2983 6570 1.573108 ATTCCTCCACCGACACATCT 58.427 50.000 0.00 0.00 0.00 2.90
2991 6578 1.372087 GCAGAGCAATTCCTCCACCG 61.372 60.000 0.00 0.00 32.17 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.