Multiple sequence alignment - TraesCS2B01G054500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G054500 chr2B 100.000 6312 0 0 1 6312 26575008 26568697 0.000000e+00 11657.0
1 TraesCS2B01G054500 chr2B 90.919 958 63 11 4490 5439 25856844 25855903 0.000000e+00 1266.0
2 TraesCS2B01G054500 chr2B 96.970 264 8 0 6027 6290 298132499 298132236 1.610000e-120 444.0
3 TraesCS2B01G054500 chr2B 85.664 286 30 6 270 549 26581549 26581269 2.230000e-74 291.0
4 TraesCS2B01G054500 chr2B 85.338 266 31 5 270 534 26717911 26717653 1.040000e-67 268.0
5 TraesCS2B01G054500 chr2B 84.314 255 35 4 280 533 26589096 26588846 1.760000e-60 244.0
6 TraesCS2B01G054500 chr2B 78.689 183 30 6 87 264 26581799 26581621 5.170000e-21 113.0
7 TraesCS2B01G054500 chr2D 91.638 4401 237 48 157 4491 14779110 14774775 0.000000e+00 5967.0
8 TraesCS2B01G054500 chr2D 85.263 285 30 7 270 547 14785093 14784814 3.730000e-72 283.0
9 TraesCS2B01G054500 chr2D 84.047 257 34 4 279 534 14801194 14800944 2.270000e-59 241.0
10 TraesCS2B01G054500 chr2D 98.165 109 2 0 1 109 14779221 14779113 2.320000e-44 191.0
11 TraesCS2B01G054500 chr2D 89.412 85 5 2 1 85 14786514 14786434 3.110000e-18 104.0
12 TraesCS2B01G054500 chr2A 92.235 3168 184 29 1 3137 16872755 16869619 0.000000e+00 4431.0
13 TraesCS2B01G054500 chr2A 89.211 862 60 19 3463 4301 16868631 16867780 0.000000e+00 1046.0
14 TraesCS2B01G054500 chr2A 86.957 276 25 7 281 550 16881677 16881407 3.700000e-77 300.0
15 TraesCS2B01G054500 chr2A 94.904 157 8 0 4335 4491 16867784 16867628 4.890000e-61 246.0
16 TraesCS2B01G054500 chr2A 88.398 181 6 9 3221 3399 16869367 16869200 2.980000e-48 204.0
17 TraesCS2B01G054500 chr2A 97.297 37 1 0 3135 3171 16869458 16869422 5.280000e-06 63.9
18 TraesCS2B01G054500 chr3D 83.700 2092 291 31 1018 3088 581507696 581505634 0.000000e+00 1929.0
19 TraesCS2B01G054500 chr3D 80.183 2079 338 42 1069 3119 581514836 581512804 0.000000e+00 1489.0
20 TraesCS2B01G054500 chr3D 80.308 1950 331 35 1277 3201 581458707 581456786 0.000000e+00 1424.0
21 TraesCS2B01G054500 chr3D 78.035 1598 265 47 888 2437 581421247 581419688 0.000000e+00 928.0
22 TraesCS2B01G054500 chr3D 79.142 1189 212 23 1915 3092 573403365 573404528 0.000000e+00 789.0
23 TraesCS2B01G054500 chr3D 81.115 879 128 23 999 1857 581518616 581517756 0.000000e+00 669.0
24 TraesCS2B01G054500 chr3D 85.561 561 74 4 2244 2802 581405433 581404878 1.180000e-161 580.0
25 TraesCS2B01G054500 chr3D 78.112 932 163 27 1449 2355 581390779 581389864 2.570000e-153 553.0
26 TraesCS2B01G054500 chr3D 87.197 289 33 2 2916 3200 581419674 581419386 6.100000e-85 326.0
27 TraesCS2B01G054500 chr3D 81.533 287 47 5 2350 2632 581388418 581388134 1.370000e-56 231.0
28 TraesCS2B01G054500 chr3B 81.253 2363 351 48 888 3200 776996223 776998543 0.000000e+00 1825.0
29 TraesCS2B01G054500 chr3B 79.772 2190 368 42 918 3078 776863221 776865364 0.000000e+00 1520.0
30 TraesCS2B01G054500 chr3B 78.693 2403 360 90 1002 3340 777001092 777003406 0.000000e+00 1461.0
31 TraesCS2B01G054500 chr3B 81.825 1359 187 34 4491 5805 735659984 735658642 0.000000e+00 1086.0
32 TraesCS2B01G054500 chr3B 81.129 567 69 20 4490 5031 730762064 730761511 2.720000e-113 420.0
33 TraesCS2B01G054500 chr3B 78.017 464 59 25 889 1345 776557819 776558246 1.050000e-62 252.0
34 TraesCS2B01G054500 chr6B 90.023 1293 106 16 4491 5778 283705267 283706541 0.000000e+00 1652.0
35 TraesCS2B01G054500 chr6B 78.315 807 112 40 5041 5799 10644608 10643817 4.460000e-126 462.0
36 TraesCS2B01G054500 chr6B 96.981 265 8 0 6027 6291 556846131 556846395 4.490000e-121 446.0
37 TraesCS2B01G054500 chr6B 96.296 270 9 1 6023 6292 704947975 704948243 5.810000e-120 442.0
38 TraesCS2B01G054500 chr6B 95.604 273 12 0 6026 6298 281153804 281153532 7.510000e-119 438.0
39 TraesCS2B01G054500 chr3A 80.096 2075 341 45 1069 3116 716586894 716588923 0.000000e+00 1478.0
40 TraesCS2B01G054500 chr3A 79.037 1994 340 51 1248 3198 716597843 716599801 0.000000e+00 1295.0
41 TraesCS2B01G054500 chr3A 80.990 1131 158 33 925 2038 716563550 716564640 0.000000e+00 845.0
42 TraesCS2B01G054500 chr3A 77.671 1357 261 33 1248 2589 716627887 716629216 0.000000e+00 789.0
43 TraesCS2B01G054500 chr3A 83.259 675 103 9 2419 3090 716566702 716567369 4.180000e-171 612.0
44 TraesCS2B01G054500 chr3A 78.306 484 67 19 1021 1485 716567699 716568163 1.730000e-70 278.0
45 TraesCS2B01G054500 chr3A 84.746 236 36 0 2030 2265 716565942 716566177 2.940000e-58 237.0
46 TraesCS2B01G054500 chr7A 81.865 1351 178 40 4479 5785 461314480 461315807 0.000000e+00 1075.0
47 TraesCS2B01G054500 chr7A 87.161 958 96 20 4480 5427 44659628 44658688 0.000000e+00 1062.0
48 TraesCS2B01G054500 chr7A 87.056 958 96 20 4480 5427 44551957 44551018 0.000000e+00 1057.0
49 TraesCS2B01G054500 chr7A 90.134 821 64 11 4497 5309 5177667 5178478 0.000000e+00 1051.0
50 TraesCS2B01G054500 chr7A 87.056 394 44 6 5392 5785 5178478 5178864 7.510000e-119 438.0
51 TraesCS2B01G054500 chr7A 94.444 36 1 1 5895 5929 13134275 13134240 3.000000e-03 54.7
52 TraesCS2B01G054500 chr4A 87.835 896 79 21 4500 5383 91596239 91595362 0.000000e+00 1024.0
53 TraesCS2B01G054500 chr4D 86.114 965 104 22 4475 5427 37617182 37618128 0.000000e+00 1013.0
54 TraesCS2B01G054500 chr5B 96.981 265 8 0 6027 6291 231110887 231111151 4.490000e-121 446.0
55 TraesCS2B01G054500 chr5B 95.221 272 13 0 6026 6297 153487346 153487075 1.260000e-116 431.0
56 TraesCS2B01G054500 chr5B 81.222 442 68 12 5381 5815 561627700 561627267 6.060000e-90 342.0
57 TraesCS2B01G054500 chr4B 96.992 266 7 1 6025 6289 194621423 194621688 4.490000e-121 446.0
58 TraesCS2B01G054500 chr7B 94.964 278 14 0 6027 6304 593940253 593939976 2.700000e-118 436.0
59 TraesCS2B01G054500 chr1B 94.326 282 15 1 6027 6308 547163701 547163981 1.260000e-116 431.0
60 TraesCS2B01G054500 chr1D 83.452 423 61 8 5391 5808 465458840 465459258 9.930000e-103 385.0
61 TraesCS2B01G054500 chr1D 82.423 421 60 13 5390 5806 184301760 184301350 7.780000e-94 355.0
62 TraesCS2B01G054500 chr1D 81.643 414 68 8 5380 5791 272869759 272869352 2.820000e-88 337.0
63 TraesCS2B01G054500 chr6D 81.136 440 68 8 5380 5811 335448513 335448945 7.840000e-89 339.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G054500 chr2B 26568697 26575008 6311 True 11657.00 11657 100.00000 1 6312 1 chr2B.!!$R2 6311
1 TraesCS2B01G054500 chr2B 25855903 25856844 941 True 1266.00 1266 90.91900 4490 5439 1 chr2B.!!$R1 949
2 TraesCS2B01G054500 chr2B 26581269 26581799 530 True 202.00 291 82.17650 87 549 2 chr2B.!!$R6 462
3 TraesCS2B01G054500 chr2D 14774775 14779221 4446 True 3079.00 5967 94.90150 1 4491 2 chr2D.!!$R2 4490
4 TraesCS2B01G054500 chr2A 16867628 16872755 5127 True 1198.18 4431 92.40900 1 4491 5 chr2A.!!$R2 4490
5 TraesCS2B01G054500 chr3D 581505634 581507696 2062 True 1929.00 1929 83.70000 1018 3088 1 chr3D.!!$R3 2070
6 TraesCS2B01G054500 chr3D 581456786 581458707 1921 True 1424.00 1424 80.30800 1277 3201 1 chr3D.!!$R2 1924
7 TraesCS2B01G054500 chr3D 581512804 581518616 5812 True 1079.00 1489 80.64900 999 3119 2 chr3D.!!$R6 2120
8 TraesCS2B01G054500 chr3D 573403365 573404528 1163 False 789.00 789 79.14200 1915 3092 1 chr3D.!!$F1 1177
9 TraesCS2B01G054500 chr3D 581419386 581421247 1861 True 627.00 928 82.61600 888 3200 2 chr3D.!!$R5 2312
10 TraesCS2B01G054500 chr3D 581404878 581405433 555 True 580.00 580 85.56100 2244 2802 1 chr3D.!!$R1 558
11 TraesCS2B01G054500 chr3D 581388134 581390779 2645 True 392.00 553 79.82250 1449 2632 2 chr3D.!!$R4 1183
12 TraesCS2B01G054500 chr3B 776996223 777003406 7183 False 1643.00 1825 79.97300 888 3340 2 chr3B.!!$F3 2452
13 TraesCS2B01G054500 chr3B 776863221 776865364 2143 False 1520.00 1520 79.77200 918 3078 1 chr3B.!!$F2 2160
14 TraesCS2B01G054500 chr3B 735658642 735659984 1342 True 1086.00 1086 81.82500 4491 5805 1 chr3B.!!$R2 1314
15 TraesCS2B01G054500 chr3B 730761511 730762064 553 True 420.00 420 81.12900 4490 5031 1 chr3B.!!$R1 541
16 TraesCS2B01G054500 chr6B 283705267 283706541 1274 False 1652.00 1652 90.02300 4491 5778 1 chr6B.!!$F1 1287
17 TraesCS2B01G054500 chr6B 10643817 10644608 791 True 462.00 462 78.31500 5041 5799 1 chr6B.!!$R1 758
18 TraesCS2B01G054500 chr3A 716586894 716588923 2029 False 1478.00 1478 80.09600 1069 3116 1 chr3A.!!$F1 2047
19 TraesCS2B01G054500 chr3A 716597843 716599801 1958 False 1295.00 1295 79.03700 1248 3198 1 chr3A.!!$F2 1950
20 TraesCS2B01G054500 chr3A 716627887 716629216 1329 False 789.00 789 77.67100 1248 2589 1 chr3A.!!$F3 1341
21 TraesCS2B01G054500 chr3A 716563550 716568163 4613 False 493.00 845 81.82525 925 3090 4 chr3A.!!$F4 2165
22 TraesCS2B01G054500 chr7A 461314480 461315807 1327 False 1075.00 1075 81.86500 4479 5785 1 chr7A.!!$F1 1306
23 TraesCS2B01G054500 chr7A 44658688 44659628 940 True 1062.00 1062 87.16100 4480 5427 1 chr7A.!!$R3 947
24 TraesCS2B01G054500 chr7A 44551018 44551957 939 True 1057.00 1057 87.05600 4480 5427 1 chr7A.!!$R2 947
25 TraesCS2B01G054500 chr7A 5177667 5178864 1197 False 744.50 1051 88.59500 4497 5785 2 chr7A.!!$F2 1288
26 TraesCS2B01G054500 chr4A 91595362 91596239 877 True 1024.00 1024 87.83500 4500 5383 1 chr4A.!!$R1 883
27 TraesCS2B01G054500 chr4D 37617182 37618128 946 False 1013.00 1013 86.11400 4475 5427 1 chr4D.!!$F1 952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 517 1.089920 CGCTGCAGTAAGCTTGGATT 58.910 50.000 16.64 0.0 45.94 3.01 F
1107 1225 0.673985 TCCTCCATATGGTCTTCGCG 59.326 55.000 21.28 0.0 36.34 5.87 F
1271 1410 1.079336 GTAGGCCGTGTGTTCCTCC 60.079 63.158 0.00 0.0 0.00 4.30 F
1372 1517 1.137825 CAACGCAAACAACACCGGT 59.862 52.632 0.00 0.0 0.00 5.28 F
2579 9618 0.370273 GTAGATTGCGAGCAACACCG 59.630 55.000 13.05 0.0 38.88 4.94 F
3396 10716 0.166814 GAAAGCTGGATGTGTGCGTC 59.833 55.000 0.00 0.0 0.00 5.19 F
3444 10764 0.109597 CGCACATTTGAGAAGTGGCC 60.110 55.000 0.00 0.0 33.98 5.36 F
4119 12012 1.597027 CCGGGTTATCGATGTGGCC 60.597 63.158 8.54 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1372 1517 1.006281 AGGAAGAATGCCAAGCCATCA 59.994 47.619 0.00 0.00 34.43 3.07 R
2127 3642 1.067071 CCACCGGTCTACTTGGACTTC 60.067 57.143 2.59 0.00 36.55 3.01 R
2553 9592 1.756538 TGCTCGCAATCTACATGGAGA 59.243 47.619 10.86 10.86 0.00 3.71 R
2937 9976 2.335316 TTTGTTGTCGCCCAGTACTT 57.665 45.000 0.00 0.00 0.00 2.24 R
3400 10720 0.179056 ACCAGTTGACCTGTTGACGG 60.179 55.000 0.00 0.00 39.74 4.79 R
4628 12652 0.455633 GCGGCTTGATTGCTTCACAG 60.456 55.000 0.00 0.00 32.84 3.66 R
4636 12660 2.487762 TGGAAAAGTAGCGGCTTGATTG 59.512 45.455 8.26 0.00 0.00 2.67 R
5994 16837 0.037326 AGACGCATCAACCGACACAT 60.037 50.000 0.00 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 4.403734 ACCGTTGGAACTTGAAACCATAT 58.596 39.130 0.00 0.00 33.56 1.78
172 174 5.061179 TGGACTAGTTTTTCTTTCCGGAAG 58.939 41.667 17.97 11.75 36.67 3.46
247 252 9.349145 GATAGAGTTACTTGTTCAGAGAACTTC 57.651 37.037 10.79 0.00 34.38 3.01
259 264 4.572389 TCAGAGAACTTCTTGTCTTGCAAC 59.428 41.667 0.00 0.00 32.41 4.17
297 369 7.565680 ACTAGTACTTGGTTATATGCAGCTTT 58.434 34.615 0.00 0.00 0.00 3.51
365 441 6.093495 TCAGTCCTTTATTGCCTTAACGATTG 59.907 38.462 0.00 0.00 0.00 2.67
437 517 1.089920 CGCTGCAGTAAGCTTGGATT 58.910 50.000 16.64 0.00 45.94 3.01
524 604 1.678425 GGAGAAGAAGCAGGCTGAAGG 60.678 57.143 20.86 0.00 0.00 3.46
541 621 3.324846 TGAAGGAGCTAGCAAGAACTGAA 59.675 43.478 18.83 0.00 0.00 3.02
543 623 3.169099 AGGAGCTAGCAAGAACTGAAGA 58.831 45.455 18.83 0.00 0.00 2.87
544 624 3.056179 AGGAGCTAGCAAGAACTGAAGAC 60.056 47.826 18.83 0.00 0.00 3.01
549 643 3.827008 AGCAAGAACTGAAGACTGTCA 57.173 42.857 10.88 0.00 0.00 3.58
550 644 4.142609 AGCAAGAACTGAAGACTGTCAA 57.857 40.909 10.88 0.00 0.00 3.18
562 656 8.778358 ACTGAAGACTGTCAATGATTCTTTTAC 58.222 33.333 10.88 0.00 0.00 2.01
606 709 5.999205 ATGGTCAAGTTTTGAATGGCATA 57.001 34.783 0.00 0.00 42.15 3.14
636 739 8.522178 AAATCGAAGAATAGACAATCGGATAC 57.478 34.615 0.00 0.00 43.58 2.24
665 768 1.103803 TCTGTCTCCGGAGTGTATGC 58.896 55.000 30.17 14.64 0.00 3.14
680 784 3.551890 GTGTATGCTCGACATGATTCGTT 59.448 43.478 0.00 0.00 40.06 3.85
687 791 5.191059 GCTCGACATGATTCGTTATGTTTC 58.809 41.667 0.00 0.00 37.63 2.78
702 806 9.684448 TCGTTATGTTTCTTATCTGATCTGATC 57.316 33.333 17.39 10.72 0.00 2.92
762 866 3.777478 AGGATGATTTACACACGTACCG 58.223 45.455 0.00 0.00 0.00 4.02
763 867 2.861935 GGATGATTTACACACGTACCGG 59.138 50.000 0.00 0.00 0.00 5.28
764 868 3.429272 GGATGATTTACACACGTACCGGA 60.429 47.826 9.46 0.00 0.00 5.14
770 874 1.211969 CACACGTACCGGACCTCTG 59.788 63.158 9.46 0.00 0.00 3.35
833 937 4.505742 GGAGACTTGGTCTGATGGAAACTT 60.506 45.833 4.85 0.00 43.53 2.66
844 948 6.533367 GTCTGATGGAAACTTCACAGATAGAC 59.467 42.308 0.00 0.00 39.36 2.59
845 949 6.438741 TCTGATGGAAACTTCACAGATAGACT 59.561 38.462 0.00 0.00 39.36 3.24
846 950 7.009179 TGATGGAAACTTCACAGATAGACTT 57.991 36.000 0.00 0.00 39.36 3.01
847 951 6.875726 TGATGGAAACTTCACAGATAGACTTG 59.124 38.462 0.00 0.00 39.36 3.16
848 952 5.551233 TGGAAACTTCACAGATAGACTTGG 58.449 41.667 0.00 0.00 0.00 3.61
849 953 5.071788 TGGAAACTTCACAGATAGACTTGGT 59.928 40.000 0.00 0.00 0.00 3.67
850 954 5.639931 GGAAACTTCACAGATAGACTTGGTC 59.360 44.000 0.00 0.00 0.00 4.02
851 955 5.808366 AACTTCACAGATAGACTTGGTCA 57.192 39.130 0.52 0.00 34.60 4.02
852 956 5.398603 ACTTCACAGATAGACTTGGTCAG 57.601 43.478 0.52 0.00 34.60 3.51
853 957 5.080337 ACTTCACAGATAGACTTGGTCAGA 58.920 41.667 0.52 0.00 34.60 3.27
854 958 5.719085 ACTTCACAGATAGACTTGGTCAGAT 59.281 40.000 0.52 0.00 34.60 2.90
855 959 6.892456 ACTTCACAGATAGACTTGGTCAGATA 59.108 38.462 0.52 0.00 34.60 1.98
856 960 6.951062 TCACAGATAGACTTGGTCAGATAG 57.049 41.667 0.52 0.00 34.60 2.08
857 961 6.663734 TCACAGATAGACTTGGTCAGATAGA 58.336 40.000 0.52 0.00 34.60 1.98
858 962 7.293828 TCACAGATAGACTTGGTCAGATAGAT 58.706 38.462 0.52 0.00 34.60 1.98
859 963 7.230309 TCACAGATAGACTTGGTCAGATAGATG 59.770 40.741 0.52 0.00 34.60 2.90
860 964 6.493115 ACAGATAGACTTGGTCAGATAGATGG 59.507 42.308 0.52 0.00 34.60 3.51
861 965 5.480073 AGATAGACTTGGTCAGATAGATGGC 59.520 44.000 0.52 0.00 34.60 4.40
862 966 3.378512 AGACTTGGTCAGATAGATGGCA 58.621 45.455 0.00 0.00 34.60 4.92
913 1020 4.220382 TGTCATTTGGCTTATGAACCCTTG 59.780 41.667 4.14 0.00 34.06 3.61
936 1043 2.224426 TGTTTGACGGACATTGCTAGGT 60.224 45.455 0.00 0.00 0.00 3.08
964 1071 2.943033 TCATCGTCGAGATCACAAGCTA 59.057 45.455 0.00 0.00 37.52 3.32
965 1072 3.565902 TCATCGTCGAGATCACAAGCTAT 59.434 43.478 0.00 0.00 37.52 2.97
1014 1126 4.261572 CGAGCTTCCAATTCCAAACAAGAA 60.262 41.667 0.00 0.00 0.00 2.52
1107 1225 0.673985 TCCTCCATATGGTCTTCGCG 59.326 55.000 21.28 0.00 36.34 5.87
1261 1400 4.078516 GGGAACAGCGTAGGCCGT 62.079 66.667 3.28 0.00 41.24 5.68
1271 1410 1.079336 GTAGGCCGTGTGTTCCTCC 60.079 63.158 0.00 0.00 0.00 4.30
1273 1412 3.948719 GGCCGTGTGTTCCTCCCA 61.949 66.667 0.00 0.00 0.00 4.37
1365 1510 2.229062 TCAAGGTGAACAACGCAAACAA 59.771 40.909 0.00 0.00 0.00 2.83
1366 1511 2.271821 AGGTGAACAACGCAAACAAC 57.728 45.000 0.00 0.00 0.00 3.32
1367 1512 1.542030 AGGTGAACAACGCAAACAACA 59.458 42.857 0.00 0.00 0.00 3.33
1372 1517 1.137825 CAACGCAAACAACACCGGT 59.862 52.632 0.00 0.00 0.00 5.28
1426 1571 1.883021 GGCCGACATTCCCAAGTTG 59.117 57.895 0.00 0.00 0.00 3.16
1894 2081 4.796231 CCTCCCGCACCGAAGACG 62.796 72.222 0.00 0.00 39.43 4.18
1919 2124 7.148390 CGCTGCTGCTAGTAGAGATAATAACTA 60.148 40.741 12.54 0.00 30.02 2.24
1923 2128 9.444600 GCTGCTAGTAGAGATAATAACTAGACT 57.555 37.037 12.54 0.00 42.57 3.24
1972 2177 2.950172 CTTTGTTGGCGTCCGTCGG 61.950 63.158 4.39 4.39 40.26 4.79
2025 2230 1.994463 CTCTTGCTAGGGGCCTTGT 59.006 57.895 0.84 0.00 40.92 3.16
2102 3617 1.219393 CTCGGGCAAGGAGGTTCTC 59.781 63.158 0.00 0.00 0.00 2.87
2125 3640 3.806949 TCTGTTTATGAGGGCCAACTT 57.193 42.857 6.18 0.10 0.00 2.66
2127 3642 2.493278 CTGTTTATGAGGGCCAACTTGG 59.507 50.000 6.18 3.10 41.55 3.61
2165 3680 4.988540 CGGTGGCGATAAAGATATTCAAGA 59.011 41.667 0.00 0.00 0.00 3.02
2223 3747 1.733718 CGAGCTCAAGATTGCGAGTCA 60.734 52.381 15.40 0.00 0.00 3.41
2464 9486 4.327357 ACTTACATCGCTTCATTCAACTCG 59.673 41.667 0.00 0.00 0.00 4.18
2553 9592 3.181436 ACCTAGGCTCTGCATTGCAATAT 60.181 43.478 12.53 0.30 38.41 1.28
2579 9618 0.370273 GTAGATTGCGAGCAACACCG 59.630 55.000 13.05 0.00 38.88 4.94
2775 9814 2.345244 CAGCGGAACAGGCAGTCT 59.655 61.111 0.00 0.00 0.00 3.24
2808 9847 5.705441 CAGTTTTGGCATTGTCCTACTAGAA 59.295 40.000 0.00 0.00 0.00 2.10
2889 9928 3.055602 GGGTAAGGAGTTTGTACCACGAT 60.056 47.826 0.00 0.00 39.29 3.73
3093 10141 2.111043 CTGGCACCGGTGACACTT 59.889 61.111 39.37 0.00 45.07 3.16
3122 10186 5.390387 ACCATAGCCTTTGTAGTCCAAAAA 58.610 37.500 0.00 0.00 42.31 1.94
3211 10436 9.213777 AGGAATCATGTACTAGAAAGTTGGATA 57.786 33.333 0.00 0.00 37.15 2.59
3352 10589 0.179045 ATGCTTGAGCCGGGATGTAC 60.179 55.000 2.18 0.00 41.18 2.90
3371 10608 5.149239 TGTACCGGGAATAGGAATCATGTA 58.851 41.667 6.32 0.00 0.00 2.29
3372 10609 4.618920 ACCGGGAATAGGAATCATGTAC 57.381 45.455 6.32 0.00 0.00 2.90
3394 10714 1.662629 CTAGAAAGCTGGATGTGTGCG 59.337 52.381 0.00 0.00 0.00 5.34
3395 10715 0.250467 AGAAAGCTGGATGTGTGCGT 60.250 50.000 0.00 0.00 0.00 5.24
3396 10716 0.166814 GAAAGCTGGATGTGTGCGTC 59.833 55.000 0.00 0.00 0.00 5.19
3397 10717 0.534877 AAAGCTGGATGTGTGCGTCA 60.535 50.000 0.00 0.00 32.40 4.35
3398 10718 0.534877 AAGCTGGATGTGTGCGTCAA 60.535 50.000 0.00 0.00 32.40 3.18
3399 10719 0.952497 AGCTGGATGTGTGCGTCAAG 60.952 55.000 0.00 0.00 35.29 3.02
3400 10720 2.518836 GCTGGATGTGTGCGTCAAGC 62.519 60.000 1.05 1.05 46.73 4.01
3409 10729 2.551270 GCGTCAAGCCGTCAACAG 59.449 61.111 0.00 0.00 40.81 3.16
3444 10764 0.109597 CGCACATTTGAGAAGTGGCC 60.110 55.000 0.00 0.00 33.98 5.36
3479 11320 7.438757 TCGATGCTAGTACAAGTGTTGTTTTTA 59.561 33.333 0.00 0.00 42.22 1.52
3480 11321 7.740346 CGATGCTAGTACAAGTGTTGTTTTTAG 59.260 37.037 0.00 0.52 42.22 1.85
3659 11526 6.288294 TGTACATATATTGTGCCACCTCTTC 58.712 40.000 0.00 0.00 39.94 2.87
3860 11736 8.661352 TTGCTTCTACGATTCATCATTGATAA 57.339 30.769 0.00 0.00 0.00 1.75
3955 11845 5.674525 TCAATACTGGTGATTGATGTCCTC 58.325 41.667 0.00 0.00 38.17 3.71
4064 11956 9.477484 ACGGACAACTGATTCAAGTATATTATC 57.523 33.333 0.00 0.00 0.00 1.75
4119 12012 1.597027 CCGGGTTATCGATGTGGCC 60.597 63.158 8.54 0.00 0.00 5.36
4208 12105 5.221803 TGTTATTTTGCATGAAACCACCCAT 60.222 36.000 0.00 0.00 0.00 4.00
4285 12185 8.765488 TGATATGGAGGCTTTAATCAATTTCA 57.235 30.769 0.00 0.00 0.00 2.69
4291 12191 8.428063 TGGAGGCTTTAATCAATTTCAAGAAAA 58.572 29.630 0.00 0.00 33.56 2.29
4318 12218 2.163818 CAAGACGTGCTGGTCCTTTA 57.836 50.000 0.00 0.00 37.66 1.85
4329 12229 3.128764 GCTGGTCCTTTATACAACAAGCC 59.871 47.826 0.00 0.00 0.00 4.35
4330 12230 3.692690 TGGTCCTTTATACAACAAGCCC 58.307 45.455 0.00 0.00 0.00 5.19
4369 12389 2.969628 TCTCTTCGATTTGGAGAGCC 57.030 50.000 4.47 0.00 33.04 4.70
4397 12417 7.383843 GGGTTGATAACATTGTTTACAAAGGTG 59.616 37.037 7.45 0.00 39.55 4.00
4579 12602 7.680442 TTATATGTGCAAGCAAAACTCTGTA 57.320 32.000 0.00 0.00 0.00 2.74
4627 12651 2.592287 GGTTTCGCCGGGTGTGAA 60.592 61.111 2.18 1.06 41.59 3.18
4628 12652 2.635338 GTTTCGCCGGGTGTGAAC 59.365 61.111 2.18 10.07 42.94 3.18
4636 12660 1.507141 CCGGGTGTGAACTGTGAAGC 61.507 60.000 0.00 0.00 0.00 3.86
4643 12667 4.285292 GTGTGAACTGTGAAGCAATCAAG 58.715 43.478 0.00 0.00 40.50 3.02
4670 12697 5.755375 GCTACTTTTCCATCATTGATCGAGA 59.245 40.000 0.00 0.00 0.00 4.04
4733 12760 8.551682 AAGGCCCATGAATTATTCAATCTAAA 57.448 30.769 11.88 0.00 43.95 1.85
5058 13111 8.113062 CGCAACAAAATTTGAAACATGAAAGTA 58.887 29.630 13.19 0.00 0.00 2.24
5172 13230 7.331687 GGGAACATGTGTTGAAAATTCATAAGG 59.668 37.037 0.00 0.00 38.56 2.69
5260 13326 5.820926 TTTTCGAATTTGGAGCATTTTCG 57.179 34.783 0.00 0.00 40.23 3.46
5263 13329 4.722194 TCGAATTTGGAGCATTTTCGAAG 58.278 39.130 0.00 0.00 43.43 3.79
5486 13589 6.770303 AGAGGAAGGAGCATAAAAATAGAAGC 59.230 38.462 0.00 0.00 0.00 3.86
5508 13611 7.120789 AGCAAAACACAGAAACAAAGAAAAG 57.879 32.000 0.00 0.00 0.00 2.27
5509 13612 5.790003 GCAAAACACAGAAACAAAGAAAAGC 59.210 36.000 0.00 0.00 0.00 3.51
5532 13635 1.762708 CCAGCCCATTATCGGTTGTT 58.237 50.000 0.00 0.00 30.11 2.83
5557 13660 2.413837 ACGAAGCTGCGACTATTTGTT 58.586 42.857 24.02 0.00 34.83 2.83
5587 13690 6.831353 TGTGTGAAAAATAGAACTTTCCCAGA 59.169 34.615 0.00 0.00 31.75 3.86
5778 13885 5.237705 GCGAAATGCGTTTTGCTTTATTAC 58.762 37.500 28.90 4.98 46.64 1.89
5781 13888 7.588834 CGAAATGCGTTTTGCTTTATTACTAC 58.411 34.615 5.17 0.00 46.63 2.73
5785 13892 6.524490 TGCGTTTTGCTTTATTACTACGTAC 58.476 36.000 0.00 0.00 46.63 3.67
5787 13894 7.148606 TGCGTTTTGCTTTATTACTACGTACAT 60.149 33.333 0.00 0.00 46.63 2.29
5869 13976 8.960591 CAATGGTTGGATAAGTCAAGTATCTTT 58.039 33.333 0.00 0.00 0.00 2.52
5927 16770 7.437748 ACATCTTATATTTTGAGACGGAGGAG 58.562 38.462 0.00 0.00 0.00 3.69
5931 16774 7.558807 TCTTATATTTTGAGACGGAGGAGTGTA 59.441 37.037 0.00 0.00 0.00 2.90
5933 16776 4.884668 TTTTGAGACGGAGGAGTGTAAT 57.115 40.909 0.00 0.00 0.00 1.89
5934 16777 4.884668 TTTGAGACGGAGGAGTGTAATT 57.115 40.909 0.00 0.00 0.00 1.40
5937 16780 5.320549 TGAGACGGAGGAGTGTAATTAAC 57.679 43.478 0.00 0.00 0.00 2.01
5938 16781 4.159135 TGAGACGGAGGAGTGTAATTAACC 59.841 45.833 0.00 0.00 0.00 2.85
5939 16782 4.351127 AGACGGAGGAGTGTAATTAACCT 58.649 43.478 0.00 0.00 0.00 3.50
5945 16788 5.990668 GAGGAGTGTAATTAACCTCCACAT 58.009 41.667 23.69 10.86 43.08 3.21
5950 16793 7.608761 GGAGTGTAATTAACCTCCACATTGTAA 59.391 37.037 19.68 0.00 41.57 2.41
5957 16800 3.921677 ACCTCCACATTGTAACGTACAG 58.078 45.455 0.00 0.00 40.24 2.74
5959 16802 2.671396 CTCCACATTGTAACGTACAGGC 59.329 50.000 0.00 0.00 40.24 4.85
5960 16803 1.392168 CCACATTGTAACGTACAGGCG 59.608 52.381 0.00 0.00 40.24 5.52
5962 16805 1.001181 ACATTGTAACGTACAGGCGGT 59.999 47.619 0.00 0.00 40.24 5.68
5963 16806 1.657094 CATTGTAACGTACAGGCGGTC 59.343 52.381 0.00 0.00 40.24 4.79
5964 16807 0.387112 TTGTAACGTACAGGCGGTCG 60.387 55.000 0.00 0.70 40.24 4.79
5965 16808 2.154569 GTAACGTACAGGCGGTCGC 61.155 63.158 6.83 6.83 41.06 5.19
5966 16809 2.624868 TAACGTACAGGCGGTCGCA 61.625 57.895 17.21 0.00 44.11 5.10
5967 16810 1.936436 TAACGTACAGGCGGTCGCAT 61.936 55.000 17.21 7.24 44.11 4.73
5968 16811 2.954868 CGTACAGGCGGTCGCATC 60.955 66.667 17.21 0.67 44.11 3.91
5969 16812 2.585247 GTACAGGCGGTCGCATCC 60.585 66.667 17.21 0.00 44.11 3.51
5971 16814 2.355986 TACAGGCGGTCGCATCCTT 61.356 57.895 17.21 0.00 44.11 3.36
5972 16815 2.292794 TACAGGCGGTCGCATCCTTC 62.293 60.000 17.21 0.00 44.11 3.46
5973 16816 4.162690 AGGCGGTCGCATCCTTCC 62.163 66.667 17.21 0.00 44.11 3.46
5976 16819 4.514577 CGGTCGCATCCTTCCGCT 62.515 66.667 0.00 0.00 36.68 5.52
5977 16820 2.586357 GGTCGCATCCTTCCGCTC 60.586 66.667 0.00 0.00 0.00 5.03
5979 16822 2.759973 TCGCATCCTTCCGCTCCT 60.760 61.111 0.00 0.00 0.00 3.69
5980 16823 2.587194 CGCATCCTTCCGCTCCTG 60.587 66.667 0.00 0.00 0.00 3.86
5981 16824 2.586792 GCATCCTTCCGCTCCTGT 59.413 61.111 0.00 0.00 0.00 4.00
5983 16826 1.144936 CATCCTTCCGCTCCTGTCC 59.855 63.158 0.00 0.00 0.00 4.02
5985 16828 3.382832 CCTTCCGCTCCTGTCCGT 61.383 66.667 0.00 0.00 0.00 4.69
5986 16829 2.182030 CTTCCGCTCCTGTCCGTC 59.818 66.667 0.00 0.00 0.00 4.79
5987 16830 2.599281 TTCCGCTCCTGTCCGTCA 60.599 61.111 0.00 0.00 0.00 4.35
5989 16832 3.062466 CCGCTCCTGTCCGTCAGA 61.062 66.667 6.45 0.00 46.27 3.27
5990 16833 2.636412 CCGCTCCTGTCCGTCAGAA 61.636 63.158 6.45 0.00 46.27 3.02
5991 16834 1.289066 CGCTCCTGTCCGTCAGAAA 59.711 57.895 6.45 0.00 46.27 2.52
5992 16835 0.108615 CGCTCCTGTCCGTCAGAAAT 60.109 55.000 6.45 0.00 46.27 2.17
5993 16836 1.134367 CGCTCCTGTCCGTCAGAAATA 59.866 52.381 6.45 0.00 46.27 1.40
5994 16837 2.416836 CGCTCCTGTCCGTCAGAAATAA 60.417 50.000 6.45 0.00 46.27 1.40
5995 16838 3.738281 CGCTCCTGTCCGTCAGAAATAAT 60.738 47.826 6.45 0.00 46.27 1.28
5996 16839 3.557595 GCTCCTGTCCGTCAGAAATAATG 59.442 47.826 6.45 0.00 46.27 1.90
5998 16841 4.503910 TCCTGTCCGTCAGAAATAATGTG 58.496 43.478 6.45 0.00 46.27 3.21
5999 16842 4.020573 TCCTGTCCGTCAGAAATAATGTGT 60.021 41.667 6.45 0.00 46.27 3.72
6000 16843 4.330074 CCTGTCCGTCAGAAATAATGTGTC 59.670 45.833 6.45 0.00 46.27 3.67
6002 16845 3.925688 CCGTCAGAAATAATGTGTCGG 57.074 47.619 0.00 0.00 44.62 4.79
6003 16846 3.259064 CCGTCAGAAATAATGTGTCGGT 58.741 45.455 3.78 0.00 44.83 4.69
6004 16847 3.682858 CCGTCAGAAATAATGTGTCGGTT 59.317 43.478 3.78 0.00 44.83 4.44
6005 16848 4.435518 CCGTCAGAAATAATGTGTCGGTTG 60.436 45.833 3.78 0.00 44.83 3.77
6007 16850 5.063438 CGTCAGAAATAATGTGTCGGTTGAT 59.937 40.000 0.00 0.00 31.89 2.57
6009 16852 5.030295 CAGAAATAATGTGTCGGTTGATGC 58.970 41.667 0.00 0.00 0.00 3.91
6011 16922 2.087501 TAATGTGTCGGTTGATGCGT 57.912 45.000 0.00 0.00 0.00 5.24
6013 16924 0.037326 ATGTGTCGGTTGATGCGTCT 60.037 50.000 7.58 0.00 0.00 4.18
6017 16928 1.542472 TGTCGGTTGATGCGTCTCTTA 59.458 47.619 7.58 0.00 0.00 2.10
6018 16929 2.029739 TGTCGGTTGATGCGTCTCTTAA 60.030 45.455 7.58 0.00 0.00 1.85
6019 16930 2.991190 GTCGGTTGATGCGTCTCTTAAA 59.009 45.455 7.58 0.00 0.00 1.52
6022 16933 3.304559 CGGTTGATGCGTCTCTTAAAGAG 59.695 47.826 7.58 0.00 43.64 2.85
6042 16953 4.106663 AGAGATATACTCCCTCCGTTCCTT 59.893 45.833 0.00 0.00 45.96 3.36
6045 16956 6.563163 AGATATACTCCCTCCGTTCCTTAAT 58.437 40.000 0.00 0.00 0.00 1.40
6047 16958 8.345306 AGATATACTCCCTCCGTTCCTTAATAT 58.655 37.037 0.00 0.00 0.00 1.28
6048 16959 9.638176 GATATACTCCCTCCGTTCCTTAATATA 57.362 37.037 0.00 0.00 0.00 0.86
6051 16962 5.543020 ACTCCCTCCGTTCCTTAATATAAGG 59.457 44.000 9.44 9.44 38.78 2.69
6052 16963 5.470501 TCCCTCCGTTCCTTAATATAAGGT 58.529 41.667 14.18 0.00 38.55 3.50
6053 16964 5.306160 TCCCTCCGTTCCTTAATATAAGGTG 59.694 44.000 14.18 7.21 38.55 4.00
6054 16965 5.071384 CCCTCCGTTCCTTAATATAAGGTGT 59.929 44.000 14.18 0.00 38.55 4.16
6055 16966 6.268387 CCCTCCGTTCCTTAATATAAGGTGTA 59.732 42.308 14.18 1.67 38.55 2.90
6056 16967 7.038516 CCCTCCGTTCCTTAATATAAGGTGTAT 60.039 40.741 14.18 0.00 38.55 2.29
6057 16968 8.373220 CCTCCGTTCCTTAATATAAGGTGTATT 58.627 37.037 14.18 0.00 38.55 1.89
6074 16985 8.485578 AGGTGTATTATTTTCCCAAAAAGTCA 57.514 30.769 0.00 0.00 37.76 3.41
6076 16987 9.549078 GGTGTATTATTTTCCCAAAAAGTCAAA 57.451 29.630 0.00 0.00 37.76 2.69
6082 16993 9.594478 TTATTTTCCCAAAAAGTCAAACTTCTC 57.406 29.630 0.00 0.00 37.47 2.87
6084 16995 7.948034 TTTCCCAAAAAGTCAAACTTCTCTA 57.052 32.000 0.00 0.00 37.47 2.43
6085 16996 7.948034 TTCCCAAAAAGTCAAACTTCTCTAA 57.052 32.000 0.00 0.00 37.47 2.10
6105 17016 9.924650 TCTCTAAGTTTGACCAAGTTTATAGAC 57.075 33.333 0.00 0.00 30.16 2.59
6106 17017 9.706691 CTCTAAGTTTGACCAAGTTTATAGACA 57.293 33.333 0.00 0.00 30.16 3.41
6159 17070 9.097946 TCATTATCACTAGATTCATCATGGACT 57.902 33.333 0.00 0.00 35.67 3.85
6232 17582 9.485206 TTCCTGTAAAGTTAGTCAAACATAGAC 57.515 33.333 0.00 0.00 40.83 2.59
6233 17583 8.644216 TCCTGTAAAGTTAGTCAAACATAGACA 58.356 33.333 0.00 0.00 40.83 3.41
6234 17584 9.268268 CCTGTAAAGTTAGTCAAACATAGACAA 57.732 33.333 0.00 0.00 40.83 3.18
6236 17586 9.602568 TGTAAAGTTAGTCAAACATAGACAACA 57.397 29.630 0.00 0.00 40.83 3.33
6238 17588 8.732746 AAAGTTAGTCAAACATAGACAACAGT 57.267 30.769 0.00 0.00 40.83 3.55
6239 17589 8.732746 AAGTTAGTCAAACATAGACAACAGTT 57.267 30.769 0.00 0.00 40.83 3.16
6240 17590 8.142994 AGTTAGTCAAACATAGACAACAGTTG 57.857 34.615 12.03 12.03 40.83 3.16
6241 17591 7.985184 AGTTAGTCAAACATAGACAACAGTTGA 59.015 33.333 20.56 0.00 40.83 3.18
6242 17592 6.604735 AGTCAAACATAGACAACAGTTGAC 57.395 37.500 20.56 13.83 38.46 3.18
6243 17593 6.349300 AGTCAAACATAGACAACAGTTGACT 58.651 36.000 20.56 20.20 38.46 3.41
6244 17594 6.823689 AGTCAAACATAGACAACAGTTGACTT 59.176 34.615 20.98 8.54 38.46 3.01
6245 17595 7.336931 AGTCAAACATAGACAACAGTTGACTTT 59.663 33.333 20.98 12.16 38.46 2.66
6246 17596 7.968405 GTCAAACATAGACAACAGTTGACTTTT 59.032 33.333 20.98 13.60 36.98 2.27
6247 17597 8.519526 TCAAACATAGACAACAGTTGACTTTTT 58.480 29.630 20.98 15.03 36.98 1.94
6248 17598 9.781834 CAAACATAGACAACAGTTGACTTTTTA 57.218 29.630 20.98 6.09 36.98 1.52
6282 17632 6.170846 ACACCTTATATTTAGGAACGGAGG 57.829 41.667 9.82 0.00 36.58 4.30
6283 17633 5.071384 ACACCTTATATTTAGGAACGGAGGG 59.929 44.000 9.82 0.00 36.58 4.30
6284 17634 5.306160 CACCTTATATTTAGGAACGGAGGGA 59.694 44.000 9.82 0.00 36.58 4.20
6285 17635 5.543020 ACCTTATATTTAGGAACGGAGGGAG 59.457 44.000 9.82 0.00 36.58 4.30
6286 17636 5.543020 CCTTATATTTAGGAACGGAGGGAGT 59.457 44.000 0.00 0.00 34.56 3.85
6287 17637 6.723052 CCTTATATTTAGGAACGGAGGGAGTA 59.277 42.308 0.00 0.00 34.56 2.59
6288 17638 7.399478 CCTTATATTTAGGAACGGAGGGAGTAT 59.601 40.741 0.00 0.00 34.56 2.12
6289 17639 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
6291 17641 8.912614 ATATTTAGGAACGGAGGGAGTATATT 57.087 34.615 0.00 0.00 0.00 1.28
6292 17642 6.415206 TTTAGGAACGGAGGGAGTATATTG 57.585 41.667 0.00 0.00 0.00 1.90
6293 17643 3.924922 AGGAACGGAGGGAGTATATTGT 58.075 45.455 0.00 0.00 0.00 2.71
6294 17644 5.070823 AGGAACGGAGGGAGTATATTGTA 57.929 43.478 0.00 0.00 0.00 2.41
6295 17645 5.461327 AGGAACGGAGGGAGTATATTGTAA 58.539 41.667 0.00 0.00 0.00 2.41
6296 17646 5.901276 AGGAACGGAGGGAGTATATTGTAAA 59.099 40.000 0.00 0.00 0.00 2.01
6297 17647 5.987953 GGAACGGAGGGAGTATATTGTAAAC 59.012 44.000 0.00 0.00 0.00 2.01
6298 17648 6.407299 GGAACGGAGGGAGTATATTGTAAACA 60.407 42.308 0.00 0.00 0.00 2.83
6299 17649 6.742559 ACGGAGGGAGTATATTGTAAACAT 57.257 37.500 0.00 0.00 0.00 2.71
6300 17650 6.522054 ACGGAGGGAGTATATTGTAAACATG 58.478 40.000 0.00 0.00 0.00 3.21
6301 17651 5.932303 CGGAGGGAGTATATTGTAAACATGG 59.068 44.000 0.00 0.00 0.00 3.66
6302 17652 5.705905 GGAGGGAGTATATTGTAAACATGGC 59.294 44.000 0.00 0.00 0.00 4.40
6303 17653 6.260700 AGGGAGTATATTGTAAACATGGCA 57.739 37.500 0.00 0.00 0.00 4.92
6304 17654 6.852404 AGGGAGTATATTGTAAACATGGCAT 58.148 36.000 0.00 0.00 0.00 4.40
6305 17655 7.297614 AGGGAGTATATTGTAAACATGGCATT 58.702 34.615 0.00 0.00 0.00 3.56
6306 17656 8.444783 AGGGAGTATATTGTAAACATGGCATTA 58.555 33.333 0.00 0.00 0.00 1.90
6307 17657 9.073475 GGGAGTATATTGTAAACATGGCATTAA 57.927 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.153549 CCAGTTCCTCTGCTACGGC 60.154 63.158 0.00 0.00 42.38 5.68
133 134 9.969001 AAACTAGTCCATTTTGCCTATACTTTA 57.031 29.630 0.00 0.00 0.00 1.85
142 144 6.423905 GGAAAGAAAAACTAGTCCATTTTGCC 59.576 38.462 8.19 0.82 34.76 4.52
247 252 4.999950 AGATTACTGAGGTTGCAAGACAAG 59.000 41.667 0.00 0.00 39.50 3.16
259 264 8.522542 ACCAAGTACTAGTTAGATTACTGAGG 57.477 38.462 0.00 6.12 31.55 3.86
297 369 3.043713 CGGAGCTCGCAGTTTGCA 61.044 61.111 7.83 0.00 45.36 4.08
300 372 2.048127 GACCGGAGCTCGCAGTTT 60.048 61.111 9.46 0.00 37.59 2.66
306 378 3.518998 ACCATCGACCGGAGCTCG 61.519 66.667 9.46 7.72 38.88 5.03
437 517 6.041637 AGCGAAATTGTATGTAGAGGTATCCA 59.958 38.462 0.00 0.00 0.00 3.41
504 584 1.678425 CCTTCAGCCTGCTTCTTCTCC 60.678 57.143 0.00 0.00 0.00 3.71
507 587 1.736612 CTCCTTCAGCCTGCTTCTTC 58.263 55.000 0.00 0.00 0.00 2.87
524 604 3.925913 CAGTCTTCAGTTCTTGCTAGCTC 59.074 47.826 17.23 1.66 0.00 4.09
541 621 8.352942 GTTTGGTAAAAGAATCATTGACAGTCT 58.647 33.333 1.31 0.00 0.00 3.24
543 623 7.433680 GGTTTGGTAAAAGAATCATTGACAGT 58.566 34.615 0.00 0.00 0.00 3.55
544 624 6.868339 GGGTTTGGTAAAAGAATCATTGACAG 59.132 38.462 0.00 0.00 0.00 3.51
549 643 6.994421 ACAGGGTTTGGTAAAAGAATCATT 57.006 33.333 0.00 0.00 0.00 2.57
550 644 6.782494 AGAACAGGGTTTGGTAAAAGAATCAT 59.218 34.615 0.00 0.00 0.00 2.45
562 656 0.178992 TCAGCCAGAACAGGGTTTGG 60.179 55.000 0.00 0.00 37.26 3.28
596 699 4.149511 TCGATTTCAGGTATGCCATTCA 57.850 40.909 1.54 0.00 37.19 2.57
598 701 4.780815 TCTTCGATTTCAGGTATGCCATT 58.219 39.130 1.54 0.00 37.19 3.16
601 704 6.146347 GTCTATTCTTCGATTTCAGGTATGCC 59.854 42.308 0.00 0.00 0.00 4.40
606 709 6.477033 CGATTGTCTATTCTTCGATTTCAGGT 59.523 38.462 0.00 0.00 31.74 4.00
636 739 1.064946 GGAGACAGATGGCGAGTCG 59.935 63.158 8.54 8.54 37.36 4.18
665 768 6.575083 AGAAACATAACGAATCATGTCGAG 57.425 37.500 12.18 2.82 43.86 4.04
680 784 8.183104 ACGGATCAGATCAGATAAGAAACATA 57.817 34.615 16.59 0.00 0.00 2.29
687 791 5.919707 CAGACAACGGATCAGATCAGATAAG 59.080 44.000 16.59 1.26 0.00 1.73
702 806 1.275657 GTGCGTGTTCAGACAACGG 59.724 57.895 6.27 0.00 37.57 4.44
762 866 1.067495 CCTCGTTCTCAACAGAGGTCC 60.067 57.143 14.20 0.00 42.21 4.46
763 867 1.067495 CCCTCGTTCTCAACAGAGGTC 60.067 57.143 17.96 0.10 43.90 3.85
764 868 0.969894 CCCTCGTTCTCAACAGAGGT 59.030 55.000 17.96 0.00 43.90 3.85
770 874 6.456501 AGTATATATTGCCCTCGTTCTCAAC 58.543 40.000 0.00 0.00 0.00 3.18
833 937 6.663734 TCTATCTGACCAAGTCTATCTGTGA 58.336 40.000 0.00 0.00 33.15 3.58
844 948 3.877559 TGTTGCCATCTATCTGACCAAG 58.122 45.455 0.00 0.00 0.00 3.61
845 949 3.998913 TGTTGCCATCTATCTGACCAA 57.001 42.857 0.00 0.00 0.00 3.67
846 950 4.655649 ACTATGTTGCCATCTATCTGACCA 59.344 41.667 0.00 0.00 32.29 4.02
847 951 5.220710 ACTATGTTGCCATCTATCTGACC 57.779 43.478 0.00 0.00 32.29 4.02
848 952 7.517417 CGAAAACTATGTTGCCATCTATCTGAC 60.517 40.741 0.00 0.00 32.29 3.51
849 953 6.479990 CGAAAACTATGTTGCCATCTATCTGA 59.520 38.462 0.00 0.00 32.29 3.27
850 954 6.258727 ACGAAAACTATGTTGCCATCTATCTG 59.741 38.462 0.00 0.00 32.29 2.90
851 955 6.349300 ACGAAAACTATGTTGCCATCTATCT 58.651 36.000 0.00 0.00 32.29 1.98
852 956 6.562270 CGACGAAAACTATGTTGCCATCTATC 60.562 42.308 0.00 0.00 32.29 2.08
853 957 5.234329 CGACGAAAACTATGTTGCCATCTAT 59.766 40.000 0.00 0.00 32.29 1.98
854 958 4.565166 CGACGAAAACTATGTTGCCATCTA 59.435 41.667 0.00 0.00 32.29 1.98
855 959 3.370978 CGACGAAAACTATGTTGCCATCT 59.629 43.478 0.00 0.00 32.29 2.90
856 960 3.670203 CGACGAAAACTATGTTGCCATC 58.330 45.455 0.00 0.00 32.29 3.51
857 961 2.159572 GCGACGAAAACTATGTTGCCAT 60.160 45.455 0.00 0.00 37.10 4.40
858 962 1.195900 GCGACGAAAACTATGTTGCCA 59.804 47.619 0.00 0.00 37.10 4.92
859 963 1.878373 GCGACGAAAACTATGTTGCC 58.122 50.000 0.00 0.00 37.10 4.52
860 964 1.463444 AGGCGACGAAAACTATGTTGC 59.537 47.619 0.00 0.00 41.32 4.17
861 965 6.764877 ATATAGGCGACGAAAACTATGTTG 57.235 37.500 0.00 0.00 0.00 3.33
862 966 7.594015 CACTATATAGGCGACGAAAACTATGTT 59.406 37.037 14.25 0.00 0.00 2.71
874 978 6.073765 CCAAATGACAACACTATATAGGCGAC 60.074 42.308 14.25 0.00 0.00 5.19
877 981 5.765182 AGCCAAATGACAACACTATATAGGC 59.235 40.000 14.25 4.00 36.22 3.93
905 1010 0.310854 CCGTCAAACAGCAAGGGTTC 59.689 55.000 0.00 0.00 0.00 3.62
913 1020 0.593128 AGCAATGTCCGTCAAACAGC 59.407 50.000 0.00 0.00 0.00 4.40
936 1043 2.159114 TGATCTCGACGATGAAATGGCA 60.159 45.455 0.00 0.00 30.84 4.92
964 1071 5.511363 ACAAGCTCGGCCTATATACTCTAT 58.489 41.667 0.00 0.00 0.00 1.98
965 1072 4.919793 ACAAGCTCGGCCTATATACTCTA 58.080 43.478 0.00 0.00 0.00 2.43
1014 1126 3.755628 CGGCCATTTGCTGCAGCT 61.756 61.111 36.61 16.83 40.07 4.24
1261 1400 4.329545 GGCGCTGGGAGGAACACA 62.330 66.667 7.64 0.00 0.00 3.72
1365 1510 2.034066 CCAAGCCATCACCGGTGT 59.966 61.111 32.74 18.15 0.00 4.16
1366 1511 3.443045 GCCAAGCCATCACCGGTG 61.443 66.667 29.26 29.26 0.00 4.94
1367 1512 2.786512 AATGCCAAGCCATCACCGGT 62.787 55.000 0.00 0.00 0.00 5.28
1372 1517 1.006281 AGGAAGAATGCCAAGCCATCA 59.994 47.619 0.00 0.00 34.43 3.07
1426 1571 2.279120 CCGCTCATCTCACGCTCC 60.279 66.667 0.00 0.00 0.00 4.70
1796 1944 1.153628 GGTGTAGCTCGACCGCAAT 60.154 57.895 0.00 0.00 0.00 3.56
1894 2081 6.919721 AGTTATTATCTCTACTAGCAGCAGC 58.080 40.000 0.00 0.00 42.56 5.25
1919 2124 6.299805 TGCAATGACTCCAATAACTAGTCT 57.700 37.500 0.00 0.00 40.25 3.24
1923 2128 7.176515 ACACAATTGCAATGACTCCAATAACTA 59.823 33.333 13.82 0.00 0.00 2.24
1972 2177 2.010145 TTCTCGTGAATAGCTGCCAC 57.990 50.000 0.00 0.37 0.00 5.01
2025 2230 5.630121 CCAACCTATGATAACCAATAGGCA 58.370 41.667 8.33 0.00 39.70 4.75
2102 3617 2.755103 GTTGGCCCTCATAAACAGAAGG 59.245 50.000 0.00 0.00 0.00 3.46
2104 3619 3.806949 AGTTGGCCCTCATAAACAGAA 57.193 42.857 0.00 0.00 0.00 3.02
2125 3640 1.263356 CCGGTCTACTTGGACTTCCA 58.737 55.000 0.00 0.00 45.94 3.53
2127 3642 1.067071 CCACCGGTCTACTTGGACTTC 60.067 57.143 2.59 0.00 36.55 3.01
2165 3680 2.026641 CCCCTCGCATGATGATGTTTT 58.973 47.619 0.00 0.00 31.50 2.43
2223 3747 4.021925 GGTTCCGGTGCCTGAGCT 62.022 66.667 0.00 0.00 40.80 4.09
2553 9592 1.756538 TGCTCGCAATCTACATGGAGA 59.243 47.619 10.86 10.86 0.00 3.71
2727 9766 6.670464 TGTTGAGGAACACAGGGTCTATATAA 59.330 38.462 0.00 0.00 37.15 0.98
2775 9814 4.826733 ACAATGCCAAAACTGTAGATGTCA 59.173 37.500 0.00 0.00 0.00 3.58
2937 9976 2.335316 TTTGTTGTCGCCCAGTACTT 57.665 45.000 0.00 0.00 0.00 2.24
3093 10141 4.368067 ACTACAAAGGCTATGGTAGGGAA 58.632 43.478 18.46 0.00 37.99 3.97
3122 10186 9.474313 AATACATGTATGGTATTTCTTTGTGGT 57.526 29.630 18.94 0.00 38.02 4.16
3211 10436 3.903876 GTCATCATTTGACGCGCAT 57.096 47.368 5.73 0.00 45.00 4.73
3352 10589 4.040461 AGTGTACATGATTCCTATTCCCGG 59.960 45.833 0.00 0.00 0.00 5.73
3371 10608 3.668447 CACACATCCAGCTTTCTAGTGT 58.332 45.455 0.00 0.00 39.09 3.55
3372 10609 2.417933 GCACACATCCAGCTTTCTAGTG 59.582 50.000 0.00 0.00 0.00 2.74
3394 10714 0.531974 TGACCTGTTGACGGCTTGAC 60.532 55.000 0.00 0.00 0.00 3.18
3395 10715 0.179234 TTGACCTGTTGACGGCTTGA 59.821 50.000 0.00 0.00 0.00 3.02
3396 10716 0.307760 GTTGACCTGTTGACGGCTTG 59.692 55.000 0.00 0.00 0.00 4.01
3397 10717 0.180406 AGTTGACCTGTTGACGGCTT 59.820 50.000 0.00 0.00 0.00 4.35
3398 10718 0.532862 CAGTTGACCTGTTGACGGCT 60.533 55.000 0.00 0.00 36.37 5.52
3399 10719 1.507141 CCAGTTGACCTGTTGACGGC 61.507 60.000 0.00 0.00 39.74 5.68
3400 10720 0.179056 ACCAGTTGACCTGTTGACGG 60.179 55.000 0.00 0.00 39.74 4.79
3401 10721 0.937304 CACCAGTTGACCTGTTGACG 59.063 55.000 0.00 0.00 35.72 4.35
3402 10722 2.325583 TCACCAGTTGACCTGTTGAC 57.674 50.000 0.00 0.00 37.65 3.18
3418 10738 0.605319 TCTCAAATGTGCGGGGTCAC 60.605 55.000 0.00 0.00 37.48 3.67
3444 10764 6.754209 ACTTGTACTAGCATCGAAGAAATCTG 59.246 38.462 4.10 0.00 43.58 2.90
3628 11495 6.472163 GTGGCACAATATATGTACAAGCAAAC 59.528 38.462 13.86 0.00 44.16 2.93
3659 11526 0.323178 GATATGGGGGCTGGCAGATG 60.323 60.000 20.86 0.00 0.00 2.90
3742 11612 5.187772 TGATGCTACTCAAGGTGTGACTAAT 59.812 40.000 0.00 0.00 31.13 1.73
3748 11618 6.108687 TCTAAATGATGCTACTCAAGGTGTG 58.891 40.000 0.00 0.00 0.00 3.82
3860 11736 6.784031 AGGTGTTCCTTCTTTGATGTCTAAT 58.216 36.000 0.00 0.00 42.12 1.73
3955 11845 5.276270 CAATGATGAAGCGGGTCAATAAAG 58.724 41.667 0.00 0.00 0.00 1.85
3997 11887 6.465948 TGCATTGCATTCCACTAAAAGAATT 58.534 32.000 7.38 0.00 31.71 2.17
4016 11906 5.251764 GTGCCATAGAATCCTAGATGCATT 58.748 41.667 0.00 0.00 32.80 3.56
4064 11956 6.515272 AGGGTACATACAAAGCAGAATTTG 57.485 37.500 0.00 0.00 44.14 2.32
4085 11977 2.770232 ACCCGGTTAGAACTCCATTAGG 59.230 50.000 0.00 0.00 0.00 2.69
4231 12128 8.018677 TCGAAGAGAATCATTGTTTACTCAAC 57.981 34.615 0.00 0.00 37.82 3.18
4233 12130 8.777865 AATCGAAGAGAATCATTGTTTACTCA 57.222 30.769 0.00 0.00 43.63 3.41
4284 12184 1.028905 TCTTGCCGTGGGTTTTCTTG 58.971 50.000 0.00 0.00 0.00 3.02
4285 12185 1.029681 GTCTTGCCGTGGGTTTTCTT 58.970 50.000 0.00 0.00 0.00 2.52
4307 12207 3.128764 GGCTTGTTGTATAAAGGACCAGC 59.871 47.826 0.00 0.00 32.00 4.85
4318 12218 2.437716 CGGCCGGGCTTGTTGTAT 60.438 61.111 27.04 0.00 0.00 2.29
4369 12389 7.598493 CCTTTGTAAACAATGTTATCAACCCAG 59.402 37.037 12.72 9.30 35.55 4.45
4579 12602 4.320608 AATGTTCCTTTTTCACGTGCAT 57.679 36.364 11.67 2.02 0.00 3.96
4622 12646 3.243168 GCTTGATTGCTTCACAGTTCACA 60.243 43.478 0.00 0.00 32.84 3.58
4623 12647 3.303406 GCTTGATTGCTTCACAGTTCAC 58.697 45.455 0.00 0.00 32.84 3.18
4624 12648 2.294233 GGCTTGATTGCTTCACAGTTCA 59.706 45.455 0.00 0.00 32.84 3.18
4625 12649 2.666619 CGGCTTGATTGCTTCACAGTTC 60.667 50.000 0.00 0.00 32.84 3.01
4626 12650 1.267806 CGGCTTGATTGCTTCACAGTT 59.732 47.619 0.00 0.00 32.84 3.16
4627 12651 0.877071 CGGCTTGATTGCTTCACAGT 59.123 50.000 0.00 0.00 32.84 3.55
4628 12652 0.455633 GCGGCTTGATTGCTTCACAG 60.456 55.000 0.00 0.00 32.84 3.66
4636 12660 2.487762 TGGAAAAGTAGCGGCTTGATTG 59.512 45.455 8.26 0.00 0.00 2.67
4643 12667 2.682856 TCAATGATGGAAAAGTAGCGGC 59.317 45.455 0.00 0.00 0.00 6.53
5172 13230 9.152595 TGTTAAAAGGTACACATTTTCCAAAAC 57.847 29.630 7.90 7.90 39.94 2.43
5463 13566 6.426587 TGCTTCTATTTTTATGCTCCTTCCT 58.573 36.000 0.00 0.00 0.00 3.36
5486 13589 6.008875 CGCTTTTCTTTGTTTCTGTGTTTTG 58.991 36.000 0.00 0.00 0.00 2.44
5532 13635 1.445871 TAGTCGCAGCTTCGTACAGA 58.554 50.000 5.50 0.00 0.00 3.41
5557 13660 3.563808 AGTTCTATTTTTCACACAGCGCA 59.436 39.130 11.47 0.00 0.00 6.09
5560 13663 5.920840 GGGAAAGTTCTATTTTTCACACAGC 59.079 40.000 0.21 0.00 36.84 4.40
5587 13690 2.433239 ACTTAGATTTCGGCCCACGTAT 59.567 45.455 0.00 0.00 44.69 3.06
5597 13700 1.017387 GCCAGCCCACTTAGATTTCG 58.983 55.000 0.00 0.00 0.00 3.46
5680 13787 7.095607 CGAGGTGGTACTAAATTCTTATGCATC 60.096 40.741 0.19 0.00 0.00 3.91
5720 13827 6.988622 TCCGTTCACCGTCAAAAATAATAT 57.011 33.333 0.00 0.00 33.66 1.28
5721 13828 6.594547 TCATCCGTTCACCGTCAAAAATAATA 59.405 34.615 0.00 0.00 33.66 0.98
5761 13868 5.594724 ACGTAGTAATAAAGCAAAACGCA 57.405 34.783 0.00 0.00 42.06 5.24
5836 13943 9.784531 CTTGACTTATCCAACCATTGTATCTAT 57.215 33.333 0.00 0.00 0.00 1.98
5837 13944 8.768397 ACTTGACTTATCCAACCATTGTATCTA 58.232 33.333 0.00 0.00 0.00 1.98
5838 13945 7.633789 ACTTGACTTATCCAACCATTGTATCT 58.366 34.615 0.00 0.00 0.00 1.98
5839 13946 7.865706 ACTTGACTTATCCAACCATTGTATC 57.134 36.000 0.00 0.00 0.00 2.24
5840 13947 9.561069 GATACTTGACTTATCCAACCATTGTAT 57.439 33.333 0.00 0.00 0.00 2.29
5859 13966 9.697250 TTTGCGACGAATTAATAAAGATACTTG 57.303 29.630 0.00 0.00 0.00 3.16
5900 14007 8.265055 TCCTCCGTCTCAAAATATAAGATGTTT 58.735 33.333 0.00 0.00 0.00 2.83
5901 14008 7.792032 TCCTCCGTCTCAAAATATAAGATGTT 58.208 34.615 0.00 0.00 0.00 2.71
5903 14010 7.383572 CACTCCTCCGTCTCAAAATATAAGATG 59.616 40.741 0.00 0.00 0.00 2.90
5904 14011 7.070074 ACACTCCTCCGTCTCAAAATATAAGAT 59.930 37.037 0.00 0.00 0.00 2.40
5905 14012 6.380274 ACACTCCTCCGTCTCAAAATATAAGA 59.620 38.462 0.00 0.00 0.00 2.10
5906 14013 6.574350 ACACTCCTCCGTCTCAAAATATAAG 58.426 40.000 0.00 0.00 0.00 1.73
5907 14014 6.540438 ACACTCCTCCGTCTCAAAATATAA 57.460 37.500 0.00 0.00 0.00 0.98
5908 14015 7.649533 TTACACTCCTCCGTCTCAAAATATA 57.350 36.000 0.00 0.00 0.00 0.86
5909 14016 6.540438 TTACACTCCTCCGTCTCAAAATAT 57.460 37.500 0.00 0.00 0.00 1.28
5912 14019 4.884668 ATTACACTCCTCCGTCTCAAAA 57.115 40.909 0.00 0.00 0.00 2.44
5914 14021 5.337009 GGTTAATTACACTCCTCCGTCTCAA 60.337 44.000 0.00 0.00 0.00 3.02
5915 14022 4.159135 GGTTAATTACACTCCTCCGTCTCA 59.841 45.833 0.00 0.00 0.00 3.27
5918 14025 4.680702 GAGGTTAATTACACTCCTCCGTC 58.319 47.826 11.20 0.00 38.81 4.79
5919 14026 4.732672 GAGGTTAATTACACTCCTCCGT 57.267 45.455 11.20 0.00 38.81 4.69
5927 16770 7.095102 ACGTTACAATGTGGAGGTTAATTACAC 60.095 37.037 0.00 0.00 0.00 2.90
5931 16774 6.935771 TGTACGTTACAATGTGGAGGTTAATT 59.064 34.615 0.00 0.00 35.38 1.40
5933 16776 5.851720 TGTACGTTACAATGTGGAGGTTAA 58.148 37.500 0.00 0.00 35.38 2.01
5934 16777 5.465532 TGTACGTTACAATGTGGAGGTTA 57.534 39.130 0.00 0.00 35.38 2.85
5937 16780 3.259064 CCTGTACGTTACAATGTGGAGG 58.741 50.000 0.00 0.00 38.38 4.30
5938 16781 2.671396 GCCTGTACGTTACAATGTGGAG 59.329 50.000 0.00 0.00 38.38 3.86
5939 16782 2.690786 GCCTGTACGTTACAATGTGGA 58.309 47.619 0.00 0.00 38.38 4.02
5941 16784 1.392168 CCGCCTGTACGTTACAATGTG 59.608 52.381 0.00 0.00 38.38 3.21
5945 16788 0.387112 CGACCGCCTGTACGTTACAA 60.387 55.000 0.00 0.00 38.38 2.41
5950 16793 3.695022 GATGCGACCGCCTGTACGT 62.695 63.158 12.08 0.00 41.09 3.57
5959 16802 4.514577 AGCGGAAGGATGCGACCG 62.515 66.667 17.25 17.25 43.91 4.79
5960 16803 2.586357 GAGCGGAAGGATGCGACC 60.586 66.667 0.00 0.00 43.91 4.79
5962 16805 2.759973 AGGAGCGGAAGGATGCGA 60.760 61.111 0.00 0.00 43.91 5.10
5963 16806 2.587194 CAGGAGCGGAAGGATGCG 60.587 66.667 0.00 0.00 44.03 4.73
5964 16807 1.522580 GACAGGAGCGGAAGGATGC 60.523 63.158 0.00 0.00 0.00 3.91
5965 16808 1.144936 GGACAGGAGCGGAAGGATG 59.855 63.158 0.00 0.00 0.00 3.51
5966 16809 2.427245 CGGACAGGAGCGGAAGGAT 61.427 63.158 0.00 0.00 0.00 3.24
5967 16810 3.068691 CGGACAGGAGCGGAAGGA 61.069 66.667 0.00 0.00 0.00 3.36
5968 16811 3.358076 GACGGACAGGAGCGGAAGG 62.358 68.421 0.00 0.00 0.00 3.46
5969 16812 2.182030 GACGGACAGGAGCGGAAG 59.818 66.667 0.00 0.00 0.00 3.46
5971 16814 3.062466 CTGACGGACAGGAGCGGA 61.062 66.667 0.00 0.00 42.39 5.54
5972 16815 2.154798 TTTCTGACGGACAGGAGCGG 62.155 60.000 7.58 0.00 45.76 5.52
5973 16816 0.108615 ATTTCTGACGGACAGGAGCG 60.109 55.000 7.58 0.00 45.76 5.03
5976 16819 4.020573 ACACATTATTTCTGACGGACAGGA 60.021 41.667 7.58 0.00 45.76 3.86
5977 16820 4.253685 ACACATTATTTCTGACGGACAGG 58.746 43.478 7.58 0.00 45.76 4.00
5979 16822 3.924073 CGACACATTATTTCTGACGGACA 59.076 43.478 0.00 0.00 0.00 4.02
5980 16823 3.306166 CCGACACATTATTTCTGACGGAC 59.694 47.826 0.00 0.00 40.16 4.79
5981 16824 3.056393 ACCGACACATTATTTCTGACGGA 60.056 43.478 13.30 0.00 40.78 4.69
5983 16826 4.387559 TCAACCGACACATTATTTCTGACG 59.612 41.667 0.00 0.00 0.00 4.35
5985 16828 5.163764 GCATCAACCGACACATTATTTCTGA 60.164 40.000 0.00 0.00 0.00 3.27
5986 16829 5.030295 GCATCAACCGACACATTATTTCTG 58.970 41.667 0.00 0.00 0.00 3.02
5987 16830 4.201812 CGCATCAACCGACACATTATTTCT 60.202 41.667 0.00 0.00 0.00 2.52
5989 16832 3.438781 ACGCATCAACCGACACATTATTT 59.561 39.130 0.00 0.00 0.00 1.40
5990 16833 3.006940 ACGCATCAACCGACACATTATT 58.993 40.909 0.00 0.00 0.00 1.40
5991 16834 2.607635 GACGCATCAACCGACACATTAT 59.392 45.455 0.00 0.00 0.00 1.28
5992 16835 1.996898 GACGCATCAACCGACACATTA 59.003 47.619 0.00 0.00 0.00 1.90
5993 16836 0.796312 GACGCATCAACCGACACATT 59.204 50.000 0.00 0.00 0.00 2.71
5994 16837 0.037326 AGACGCATCAACCGACACAT 60.037 50.000 0.00 0.00 0.00 3.21
5995 16838 0.666274 GAGACGCATCAACCGACACA 60.666 55.000 0.00 0.00 0.00 3.72
5996 16839 0.388649 AGAGACGCATCAACCGACAC 60.389 55.000 0.00 0.00 0.00 3.67
5998 16841 2.273370 TAAGAGACGCATCAACCGAC 57.727 50.000 0.00 0.00 0.00 4.79
5999 16842 3.057104 TCTTTAAGAGACGCATCAACCGA 60.057 43.478 0.00 0.00 0.00 4.69
6000 16843 3.250744 TCTTTAAGAGACGCATCAACCG 58.749 45.455 0.00 0.00 0.00 4.44
6013 16924 6.850234 ACGGAGGGAGTATATCTCTTTAAGA 58.150 40.000 0.00 0.00 39.60 2.10
6017 16928 4.833938 GGAACGGAGGGAGTATATCTCTTT 59.166 45.833 0.00 0.00 39.60 2.52
6018 16929 4.106663 AGGAACGGAGGGAGTATATCTCTT 59.893 45.833 0.00 0.00 39.60 2.85
6019 16930 3.658705 AGGAACGGAGGGAGTATATCTCT 59.341 47.826 0.00 0.00 43.50 3.10
6022 16933 6.854091 ATTAAGGAACGGAGGGAGTATATC 57.146 41.667 0.00 0.00 0.00 1.63
6028 16939 5.543020 ACCTTATATTAAGGAACGGAGGGAG 59.457 44.000 17.93 0.00 39.81 4.30
6029 16940 5.306160 CACCTTATATTAAGGAACGGAGGGA 59.694 44.000 17.93 0.00 39.81 4.20
6048 16959 8.929487 TGACTTTTTGGGAAAATAATACACCTT 58.071 29.630 0.00 0.00 34.45 3.50
6056 16967 9.594478 GAGAAGTTTGACTTTTTGGGAAAATAA 57.406 29.630 0.00 0.00 38.80 1.40
6057 16968 8.977412 AGAGAAGTTTGACTTTTTGGGAAAATA 58.023 29.630 0.00 0.00 38.80 1.40
6059 16970 7.239763 AGAGAAGTTTGACTTTTTGGGAAAA 57.760 32.000 0.00 0.00 38.80 2.29
6061 16972 7.614192 ACTTAGAGAAGTTTGACTTTTTGGGAA 59.386 33.333 0.00 0.00 43.70 3.97
6062 16973 7.116736 ACTTAGAGAAGTTTGACTTTTTGGGA 58.883 34.615 0.00 0.00 43.70 4.37
6063 16974 7.334844 ACTTAGAGAAGTTTGACTTTTTGGG 57.665 36.000 0.00 0.00 43.70 4.12
6079 16990 9.924650 GTCTATAAACTTGGTCAAACTTAGAGA 57.075 33.333 0.00 5.44 0.00 3.10
6080 16991 9.706691 TGTCTATAAACTTGGTCAAACTTAGAG 57.293 33.333 0.00 0.00 0.00 2.43
6132 17043 9.887629 GTCCATGATGAATCTAGTGATAATGAT 57.112 33.333 0.00 0.00 31.70 2.45
6133 17044 9.097946 AGTCCATGATGAATCTAGTGATAATGA 57.902 33.333 0.00 0.00 31.70 2.57
6207 17557 8.644216 TGTCTATGTTTGACTAACTTTACAGGA 58.356 33.333 1.57 0.00 37.64 3.86
6210 17560 9.602568 TGTTGTCTATGTTTGACTAACTTTACA 57.397 29.630 1.57 1.91 37.64 2.41
6212 17562 9.826574 ACTGTTGTCTATGTTTGACTAACTTTA 57.173 29.630 1.57 0.00 37.64 1.85
6213 17563 8.732746 ACTGTTGTCTATGTTTGACTAACTTT 57.267 30.769 1.57 0.00 37.64 2.66
6214 17564 8.612619 CAACTGTTGTCTATGTTTGACTAACTT 58.387 33.333 12.30 0.00 37.64 2.66
6216 17566 8.062448 GTCAACTGTTGTCTATGTTTGACTAAC 58.938 37.037 19.12 1.92 35.63 2.34
6217 17567 7.985184 AGTCAACTGTTGTCTATGTTTGACTAA 59.015 33.333 19.12 0.00 33.55 2.24
6219 17569 6.349300 AGTCAACTGTTGTCTATGTTTGACT 58.651 36.000 19.12 9.11 35.63 3.41
6220 17570 6.604735 AGTCAACTGTTGTCTATGTTTGAC 57.395 37.500 19.12 7.06 35.21 3.18
6222 17572 8.687824 AAAAAGTCAACTGTTGTCTATGTTTG 57.312 30.769 18.10 0.00 0.00 2.93
6256 17606 8.373220 CCTCCGTTCCTAAATATAAGGTGTATT 58.627 37.037 4.41 0.00 35.48 1.89
6257 17607 7.038516 CCCTCCGTTCCTAAATATAAGGTGTAT 60.039 40.741 4.41 0.00 35.48 2.29
6258 17608 6.268387 CCCTCCGTTCCTAAATATAAGGTGTA 59.732 42.308 4.41 0.00 35.48 2.90
6259 17609 5.071384 CCCTCCGTTCCTAAATATAAGGTGT 59.929 44.000 4.41 0.00 35.48 4.16
6260 17610 5.306160 TCCCTCCGTTCCTAAATATAAGGTG 59.694 44.000 4.41 0.00 35.48 4.00
6261 17611 5.470501 TCCCTCCGTTCCTAAATATAAGGT 58.529 41.667 4.41 0.00 35.48 3.50
6262 17612 5.543020 ACTCCCTCCGTTCCTAAATATAAGG 59.457 44.000 0.00 0.00 35.26 2.69
6263 17613 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
6266 17616 8.759782 CAATATACTCCCTCCGTTCCTAAATAT 58.240 37.037 0.00 0.00 0.00 1.28
6267 17617 7.731688 ACAATATACTCCCTCCGTTCCTAAATA 59.268 37.037 0.00 0.00 0.00 1.40
6268 17618 6.557633 ACAATATACTCCCTCCGTTCCTAAAT 59.442 38.462 0.00 0.00 0.00 1.40
6269 17619 5.901276 ACAATATACTCCCTCCGTTCCTAAA 59.099 40.000 0.00 0.00 0.00 1.85
6270 17620 5.461327 ACAATATACTCCCTCCGTTCCTAA 58.539 41.667 0.00 0.00 0.00 2.69
6271 17621 5.070823 ACAATATACTCCCTCCGTTCCTA 57.929 43.478 0.00 0.00 0.00 2.94
6272 17622 3.924922 ACAATATACTCCCTCCGTTCCT 58.075 45.455 0.00 0.00 0.00 3.36
6273 17623 5.796424 TTACAATATACTCCCTCCGTTCC 57.204 43.478 0.00 0.00 0.00 3.62
6274 17624 6.576185 TGTTTACAATATACTCCCTCCGTTC 58.424 40.000 0.00 0.00 0.00 3.95
6275 17625 6.549433 TGTTTACAATATACTCCCTCCGTT 57.451 37.500 0.00 0.00 0.00 4.44
6276 17626 6.463897 CCATGTTTACAATATACTCCCTCCGT 60.464 42.308 0.00 0.00 0.00 4.69
6277 17627 5.932303 CCATGTTTACAATATACTCCCTCCG 59.068 44.000 0.00 0.00 0.00 4.63
6278 17628 5.705905 GCCATGTTTACAATATACTCCCTCC 59.294 44.000 0.00 0.00 0.00 4.30
6279 17629 6.296026 TGCCATGTTTACAATATACTCCCTC 58.704 40.000 0.00 0.00 0.00 4.30
6280 17630 6.260700 TGCCATGTTTACAATATACTCCCT 57.739 37.500 0.00 0.00 0.00 4.20
6281 17631 7.524717 AATGCCATGTTTACAATATACTCCC 57.475 36.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.