Multiple sequence alignment - TraesCS2B01G052800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G052800 chr2B 100.000 2455 0 0 1 2455 25847235 25849689 0.000000e+00 4534
1 TraesCS2B01G052800 chr2B 85.141 747 84 9 1713 2442 25932894 25933630 0.000000e+00 739
2 TraesCS2B01G052800 chr2B 92.523 214 16 0 352 565 33542707 33542920 8.530000e-80 307
3 TraesCS2B01G052800 chr2D 91.469 1899 126 17 582 2455 14128797 14130684 0.000000e+00 2577
4 TraesCS2B01G052800 chr2D 76.123 423 92 8 2033 2452 207245828 207245412 1.910000e-51 213
5 TraesCS2B01G052800 chr2A 91.365 996 71 11 582 1571 16497704 16498690 0.000000e+00 1349
6 TraesCS2B01G052800 chr2A 86.175 651 79 7 1812 2455 16498703 16499349 0.000000e+00 693
7 TraesCS2B01G052800 chr2A 86.000 100 8 5 141 237 496476681 496476777 4.320000e-18 102
8 TraesCS2B01G052800 chr6B 93.925 214 12 1 356 568 54192130 54191917 3.050000e-84 322
9 TraesCS2B01G052800 chr7B 87.912 273 26 7 86 355 634627792 634628060 5.100000e-82 315
10 TraesCS2B01G052800 chr1B 93.427 213 13 1 353 565 504951634 504951845 5.100000e-82 315
11 TraesCS2B01G052800 chr1B 81.061 264 40 9 97 355 405713815 405713557 4.140000e-48 202
12 TraesCS2B01G052800 chr1B 84.615 143 16 5 2031 2171 8871076 8871214 1.180000e-28 137
13 TraesCS2B01G052800 chr4A 93.333 210 14 0 356 565 733355689 733355898 6.590000e-81 311
14 TraesCS2B01G052800 chr3D 93.365 211 12 2 356 565 484803906 484804115 6.590000e-81 311
15 TraesCS2B01G052800 chr3D 87.770 139 16 1 2055 2193 199227396 199227259 7.030000e-36 161
16 TraesCS2B01G052800 chr3A 92.523 214 16 0 354 567 504427401 504427614 8.530000e-80 307
17 TraesCS2B01G052800 chr3A 84.000 150 15 7 2025 2171 22567924 22568067 4.260000e-28 135
18 TraesCS2B01G052800 chr1D 92.891 211 15 0 355 565 18864768 18864558 8.530000e-80 307
19 TraesCS2B01G052800 chrUn 92.857 210 15 0 356 565 90109722 90109931 3.070000e-79 305
20 TraesCS2B01G052800 chr6D 92.891 211 14 1 356 565 348080831 348080621 3.070000e-79 305
21 TraesCS2B01G052800 chr5A 78.298 470 83 12 904 1358 643041968 643041503 4.000000e-73 285
22 TraesCS2B01G052800 chr5D 78.660 403 67 17 2031 2428 74428692 74429080 1.460000e-62 250
23 TraesCS2B01G052800 chr5D 85.714 140 17 3 2031 2168 455765741 455765879 7.080000e-31 145
24 TraesCS2B01G052800 chr7A 83.088 272 38 8 88 355 662413562 662413295 8.770000e-60 241
25 TraesCS2B01G052800 chr3B 85.517 145 13 6 2029 2171 819042075 819041937 7.080000e-31 145
26 TraesCS2B01G052800 chr7D 83.133 166 18 6 2009 2171 39590744 39590586 2.540000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G052800 chr2B 25847235 25849689 2454 False 4534 4534 100.000 1 2455 1 chr2B.!!$F1 2454
1 TraesCS2B01G052800 chr2B 25932894 25933630 736 False 739 739 85.141 1713 2442 1 chr2B.!!$F2 729
2 TraesCS2B01G052800 chr2D 14128797 14130684 1887 False 2577 2577 91.469 582 2455 1 chr2D.!!$F1 1873
3 TraesCS2B01G052800 chr2A 16497704 16499349 1645 False 1021 1349 88.770 582 2455 2 chr2A.!!$F2 1873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
538 539 0.106819 GGGAGCACAGATGGAAGCAT 60.107 55.0 0.0 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 2113 0.39113 TCGGTGTCATTGCTAGTGCC 60.391 55.0 0.0 0.0 38.71 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.661187 GATTTGACTAGACTATTGCAAATCATG 57.339 33.333 23.28 1.94 45.19 3.07
28 29 7.558161 TTGACTAGACTATTGCAAATCATGG 57.442 36.000 1.71 0.00 0.00 3.66
29 30 6.653020 TGACTAGACTATTGCAAATCATGGT 58.347 36.000 1.71 0.00 0.00 3.55
30 31 6.763135 TGACTAGACTATTGCAAATCATGGTC 59.237 38.462 1.71 4.60 0.00 4.02
31 32 6.893583 ACTAGACTATTGCAAATCATGGTCT 58.106 36.000 17.44 17.44 34.75 3.85
32 33 6.989169 ACTAGACTATTGCAAATCATGGTCTC 59.011 38.462 16.98 0.00 33.53 3.36
33 34 5.999044 AGACTATTGCAAATCATGGTCTCT 58.001 37.500 1.71 0.00 0.00 3.10
34 35 5.821470 AGACTATTGCAAATCATGGTCTCTG 59.179 40.000 1.71 0.00 0.00 3.35
35 36 5.748402 ACTATTGCAAATCATGGTCTCTGA 58.252 37.500 1.71 0.00 0.00 3.27
36 37 6.363065 ACTATTGCAAATCATGGTCTCTGAT 58.637 36.000 1.71 0.00 34.86 2.90
37 38 5.769484 ATTGCAAATCATGGTCTCTGATC 57.231 39.130 1.71 0.00 32.22 2.92
38 39 4.224991 TGCAAATCATGGTCTCTGATCA 57.775 40.909 0.00 0.00 32.22 2.92
39 40 4.788679 TGCAAATCATGGTCTCTGATCAT 58.211 39.130 0.00 0.00 33.14 2.45
40 41 4.820173 TGCAAATCATGGTCTCTGATCATC 59.180 41.667 0.00 0.00 30.09 2.92
41 42 4.215827 GCAAATCATGGTCTCTGATCATCC 59.784 45.833 0.00 0.00 30.09 3.51
42 43 5.622180 CAAATCATGGTCTCTGATCATCCT 58.378 41.667 0.00 0.00 30.09 3.24
43 44 5.908562 AATCATGGTCTCTGATCATCCTT 57.091 39.130 0.00 0.00 30.09 3.36
44 45 5.908562 ATCATGGTCTCTGATCATCCTTT 57.091 39.130 0.00 0.00 30.09 3.11
45 46 7.384524 AATCATGGTCTCTGATCATCCTTTA 57.615 36.000 0.00 0.00 30.09 1.85
46 47 6.416631 TCATGGTCTCTGATCATCCTTTAG 57.583 41.667 0.00 0.00 30.09 1.85
47 48 4.679373 TGGTCTCTGATCATCCTTTAGC 57.321 45.455 0.00 0.00 0.00 3.09
48 49 4.033009 TGGTCTCTGATCATCCTTTAGCA 58.967 43.478 0.00 0.00 0.00 3.49
49 50 4.657504 TGGTCTCTGATCATCCTTTAGCAT 59.342 41.667 0.00 0.00 0.00 3.79
50 51 4.996122 GGTCTCTGATCATCCTTTAGCATG 59.004 45.833 0.00 0.00 0.00 4.06
51 52 5.454471 GGTCTCTGATCATCCTTTAGCATGT 60.454 44.000 0.00 0.00 0.00 3.21
52 53 6.239430 GGTCTCTGATCATCCTTTAGCATGTA 60.239 42.308 0.00 0.00 0.00 2.29
53 54 7.385267 GTCTCTGATCATCCTTTAGCATGTAT 58.615 38.462 0.00 0.00 0.00 2.29
54 55 7.331440 GTCTCTGATCATCCTTTAGCATGTATG 59.669 40.741 0.00 0.00 0.00 2.39
55 56 7.015974 TCTCTGATCATCCTTTAGCATGTATGT 59.984 37.037 0.00 0.00 0.00 2.29
56 57 7.512130 TCTGATCATCCTTTAGCATGTATGTT 58.488 34.615 0.00 0.00 0.00 2.71
57 58 7.994911 TCTGATCATCCTTTAGCATGTATGTTT 59.005 33.333 0.00 0.00 0.00 2.83
58 59 8.523915 TGATCATCCTTTAGCATGTATGTTTT 57.476 30.769 0.00 0.00 0.00 2.43
59 60 9.625747 TGATCATCCTTTAGCATGTATGTTTTA 57.374 29.630 0.00 0.00 0.00 1.52
66 67 9.009327 CCTTTAGCATGTATGTTTTAAATGTCG 57.991 33.333 0.00 0.00 0.00 4.35
67 68 9.767684 CTTTAGCATGTATGTTTTAAATGTCGA 57.232 29.630 0.00 0.00 0.00 4.20
68 69 9.549509 TTTAGCATGTATGTTTTAAATGTCGAC 57.450 29.630 9.11 9.11 0.00 4.20
69 70 6.551736 AGCATGTATGTTTTAAATGTCGACC 58.448 36.000 14.12 0.00 0.00 4.79
70 71 6.374333 AGCATGTATGTTTTAAATGTCGACCT 59.626 34.615 14.12 0.00 0.00 3.85
71 72 7.027161 GCATGTATGTTTTAAATGTCGACCTT 58.973 34.615 14.12 6.69 0.00 3.50
72 73 8.178964 GCATGTATGTTTTAAATGTCGACCTTA 58.821 33.333 14.12 8.05 0.00 2.69
73 74 9.702726 CATGTATGTTTTAAATGTCGACCTTAG 57.297 33.333 14.12 0.00 0.00 2.18
74 75 7.745015 TGTATGTTTTAAATGTCGACCTTAGC 58.255 34.615 14.12 6.12 0.00 3.09
75 76 5.272167 TGTTTTAAATGTCGACCTTAGCG 57.728 39.130 14.12 0.00 0.00 4.26
76 77 4.989797 TGTTTTAAATGTCGACCTTAGCGA 59.010 37.500 14.12 0.00 35.08 4.93
82 83 3.261250 TCGACCTTAGCGACCTCTT 57.739 52.632 0.00 0.00 32.09 2.85
83 84 1.542492 TCGACCTTAGCGACCTCTTT 58.458 50.000 0.00 0.00 32.09 2.52
84 85 1.201647 TCGACCTTAGCGACCTCTTTG 59.798 52.381 0.00 0.00 32.09 2.77
85 86 1.067776 CGACCTTAGCGACCTCTTTGT 60.068 52.381 0.00 0.00 0.00 2.83
86 87 2.163010 CGACCTTAGCGACCTCTTTGTA 59.837 50.000 0.00 0.00 0.00 2.41
87 88 3.181489 CGACCTTAGCGACCTCTTTGTAT 60.181 47.826 0.00 0.00 0.00 2.29
88 89 4.677250 CGACCTTAGCGACCTCTTTGTATT 60.677 45.833 0.00 0.00 0.00 1.89
89 90 5.449588 CGACCTTAGCGACCTCTTTGTATTA 60.450 44.000 0.00 0.00 0.00 0.98
90 91 6.290294 ACCTTAGCGACCTCTTTGTATTAA 57.710 37.500 0.00 0.00 0.00 1.40
91 92 6.885922 ACCTTAGCGACCTCTTTGTATTAAT 58.114 36.000 0.00 0.00 0.00 1.40
92 93 8.015185 ACCTTAGCGACCTCTTTGTATTAATA 57.985 34.615 0.00 0.00 0.00 0.98
93 94 8.480501 ACCTTAGCGACCTCTTTGTATTAATAA 58.519 33.333 0.00 0.00 0.00 1.40
94 95 8.762426 CCTTAGCGACCTCTTTGTATTAATAAC 58.238 37.037 0.00 0.00 0.00 1.89
95 96 9.309516 CTTAGCGACCTCTTTGTATTAATAACA 57.690 33.333 0.00 0.00 0.00 2.41
96 97 9.656040 TTAGCGACCTCTTTGTATTAATAACAA 57.344 29.630 0.00 2.18 35.12 2.83
97 98 8.197988 AGCGACCTCTTTGTATTAATAACAAG 57.802 34.615 0.00 3.11 38.05 3.16
98 99 8.038944 AGCGACCTCTTTGTATTAATAACAAGA 58.961 33.333 13.36 13.36 38.05 3.02
99 100 8.827677 GCGACCTCTTTGTATTAATAACAAGAT 58.172 33.333 14.01 5.14 38.05 2.40
108 109 8.601845 TGTATTAATAACAAGATGATGTCCCG 57.398 34.615 0.00 0.00 31.81 5.14
109 110 6.560253 ATTAATAACAAGATGATGTCCCGC 57.440 37.500 0.00 0.00 31.81 6.13
110 111 1.934589 TAACAAGATGATGTCCCGCG 58.065 50.000 0.00 0.00 31.81 6.46
111 112 1.369091 AACAAGATGATGTCCCGCGC 61.369 55.000 0.00 0.00 31.81 6.86
112 113 1.815003 CAAGATGATGTCCCGCGCA 60.815 57.895 8.75 0.00 0.00 6.09
113 114 1.078497 AAGATGATGTCCCGCGCAA 60.078 52.632 8.75 0.00 0.00 4.85
114 115 0.464373 AAGATGATGTCCCGCGCAAT 60.464 50.000 8.75 0.00 0.00 3.56
115 116 1.162181 AGATGATGTCCCGCGCAATG 61.162 55.000 8.75 0.00 0.00 2.82
116 117 2.722130 GATGATGTCCCGCGCAATGC 62.722 60.000 8.75 0.00 41.47 3.56
117 118 3.204827 GATGTCCCGCGCAATGCT 61.205 61.111 8.75 0.00 43.27 3.79
118 119 3.459378 GATGTCCCGCGCAATGCTG 62.459 63.158 8.75 0.00 43.27 4.41
161 162 9.830186 ATATGTATGGATAAGTGGTAGAAGACT 57.170 33.333 0.00 0.00 0.00 3.24
163 164 9.656323 ATGTATGGATAAGTGGTAGAAGACTAA 57.344 33.333 0.00 0.00 0.00 2.24
164 165 9.483489 TGTATGGATAAGTGGTAGAAGACTAAA 57.517 33.333 0.00 0.00 0.00 1.85
212 213 9.614792 AAAGTGTCTTACATGAGTTATAATCCC 57.385 33.333 0.00 0.00 0.00 3.85
213 214 7.434492 AGTGTCTTACATGAGTTATAATCCCG 58.566 38.462 0.00 0.00 0.00 5.14
214 215 6.145696 GTGTCTTACATGAGTTATAATCCCGC 59.854 42.308 0.00 0.00 0.00 6.13
215 216 5.345202 GTCTTACATGAGTTATAATCCCGCG 59.655 44.000 0.00 0.00 0.00 6.46
216 217 5.242171 TCTTACATGAGTTATAATCCCGCGA 59.758 40.000 8.23 0.00 0.00 5.87
217 218 4.330944 ACATGAGTTATAATCCCGCGAA 57.669 40.909 8.23 0.00 0.00 4.70
218 219 4.699637 ACATGAGTTATAATCCCGCGAAA 58.300 39.130 8.23 0.00 0.00 3.46
219 220 5.120399 ACATGAGTTATAATCCCGCGAAAA 58.880 37.500 8.23 0.00 0.00 2.29
220 221 5.587043 ACATGAGTTATAATCCCGCGAAAAA 59.413 36.000 8.23 0.00 0.00 1.94
237 238 1.967319 AAAAGTCATGCGTGAGGTGT 58.033 45.000 9.39 0.00 34.36 4.16
238 239 2.831685 AAAGTCATGCGTGAGGTGTA 57.168 45.000 9.39 0.00 34.36 2.90
239 240 3.334583 AAAGTCATGCGTGAGGTGTAT 57.665 42.857 9.39 0.00 34.36 2.29
240 241 2.299993 AGTCATGCGTGAGGTGTATG 57.700 50.000 9.39 0.00 34.36 2.39
241 242 0.652592 GTCATGCGTGAGGTGTATGC 59.347 55.000 9.39 0.00 34.36 3.14
242 243 0.536724 TCATGCGTGAGGTGTATGCT 59.463 50.000 3.97 0.00 30.62 3.79
243 244 1.066215 TCATGCGTGAGGTGTATGCTT 60.066 47.619 3.97 0.00 30.62 3.91
244 245 1.739466 CATGCGTGAGGTGTATGCTTT 59.261 47.619 0.00 0.00 0.00 3.51
245 246 2.753055 TGCGTGAGGTGTATGCTTTA 57.247 45.000 0.00 0.00 0.00 1.85
246 247 2.343101 TGCGTGAGGTGTATGCTTTAC 58.657 47.619 0.00 0.00 0.00 2.01
247 248 2.289133 TGCGTGAGGTGTATGCTTTACA 60.289 45.455 0.00 0.00 0.00 2.41
248 249 2.936498 GCGTGAGGTGTATGCTTTACAT 59.064 45.455 3.86 0.00 43.18 2.29
249 250 3.242413 GCGTGAGGTGTATGCTTTACATG 60.242 47.826 0.00 0.00 40.06 3.21
250 251 4.180817 CGTGAGGTGTATGCTTTACATGA 58.819 43.478 0.00 0.00 40.06 3.07
251 252 4.629634 CGTGAGGTGTATGCTTTACATGAA 59.370 41.667 0.00 0.00 40.06 2.57
252 253 5.220472 CGTGAGGTGTATGCTTTACATGAAG 60.220 44.000 0.00 0.00 40.06 3.02
253 254 5.874810 GTGAGGTGTATGCTTTACATGAAGA 59.125 40.000 0.00 0.00 40.06 2.87
254 255 6.036517 GTGAGGTGTATGCTTTACATGAAGAG 59.963 42.308 0.00 0.00 40.06 2.85
255 256 6.070824 TGAGGTGTATGCTTTACATGAAGAGA 60.071 38.462 0.00 0.00 40.06 3.10
256 257 6.109359 AGGTGTATGCTTTACATGAAGAGAC 58.891 40.000 0.00 0.00 40.06 3.36
257 258 5.874810 GGTGTATGCTTTACATGAAGAGACA 59.125 40.000 0.00 0.00 40.06 3.41
258 259 6.371548 GGTGTATGCTTTACATGAAGAGACAA 59.628 38.462 0.00 0.00 40.06 3.18
259 260 7.094805 GGTGTATGCTTTACATGAAGAGACAAA 60.095 37.037 0.00 0.00 40.06 2.83
260 261 8.454106 GTGTATGCTTTACATGAAGAGACAAAT 58.546 33.333 0.00 0.00 40.06 2.32
261 262 8.453320 TGTATGCTTTACATGAAGAGACAAATG 58.547 33.333 0.00 0.00 40.06 2.32
262 263 6.258230 TGCTTTACATGAAGAGACAAATGG 57.742 37.500 0.00 0.00 0.00 3.16
263 264 6.003326 TGCTTTACATGAAGAGACAAATGGA 58.997 36.000 0.00 0.00 0.00 3.41
264 265 6.489700 TGCTTTACATGAAGAGACAAATGGAA 59.510 34.615 0.00 0.00 0.00 3.53
265 266 7.014134 TGCTTTACATGAAGAGACAAATGGAAA 59.986 33.333 0.00 0.00 33.06 3.13
266 267 7.867403 GCTTTACATGAAGAGACAAATGGAAAA 59.133 33.333 0.00 0.00 33.56 2.29
267 268 9.748708 CTTTACATGAAGAGACAAATGGAAAAA 57.251 29.630 0.00 0.00 33.56 1.94
268 269 9.748708 TTTACATGAAGAGACAAATGGAAAAAG 57.251 29.630 0.00 0.00 31.49 2.27
269 270 7.352079 ACATGAAGAGACAAATGGAAAAAGT 57.648 32.000 0.00 0.00 0.00 2.66
270 271 8.463930 ACATGAAGAGACAAATGGAAAAAGTA 57.536 30.769 0.00 0.00 0.00 2.24
271 272 8.912988 ACATGAAGAGACAAATGGAAAAAGTAA 58.087 29.630 0.00 0.00 0.00 2.24
272 273 9.918630 CATGAAGAGACAAATGGAAAAAGTAAT 57.081 29.630 0.00 0.00 0.00 1.89
286 287 8.736244 TGGAAAAAGTAATTTAGGACTACATGC 58.264 33.333 0.00 0.00 0.00 4.06
287 288 8.736244 GGAAAAAGTAATTTAGGACTACATGCA 58.264 33.333 0.00 0.00 0.00 3.96
290 291 9.461312 AAAAGTAATTTAGGACTACATGCATGA 57.539 29.630 32.75 15.12 0.00 3.07
291 292 9.632638 AAAGTAATTTAGGACTACATGCATGAT 57.367 29.630 32.75 18.51 0.00 2.45
292 293 9.632638 AAGTAATTTAGGACTACATGCATGATT 57.367 29.630 32.75 18.99 0.00 2.57
293 294 9.632638 AGTAATTTAGGACTACATGCATGATTT 57.367 29.630 32.75 15.27 0.00 2.17
294 295 9.669353 GTAATTTAGGACTACATGCATGATTTG 57.331 33.333 32.75 19.30 0.00 2.32
295 296 8.523915 AATTTAGGACTACATGCATGATTTGA 57.476 30.769 32.75 11.02 0.00 2.69
296 297 8.701908 ATTTAGGACTACATGCATGATTTGAT 57.298 30.769 32.75 15.75 0.00 2.57
297 298 7.500720 TTAGGACTACATGCATGATTTGATG 57.499 36.000 32.75 14.92 0.00 3.07
298 299 5.687780 AGGACTACATGCATGATTTGATGA 58.312 37.500 32.75 6.44 0.00 2.92
299 300 6.304624 AGGACTACATGCATGATTTGATGAT 58.695 36.000 32.75 9.69 0.00 2.45
300 301 6.206829 AGGACTACATGCATGATTTGATGATG 59.793 38.462 32.75 3.64 0.00 3.07
301 302 6.016527 GGACTACATGCATGATTTGATGATGT 60.017 38.462 32.75 9.99 33.04 3.06
302 303 6.735130 ACTACATGCATGATTTGATGATGTG 58.265 36.000 32.75 2.93 31.88 3.21
303 304 4.944048 ACATGCATGATTTGATGATGTGG 58.056 39.130 32.75 0.59 30.02 4.17
304 305 3.446310 TGCATGATTTGATGATGTGGC 57.554 42.857 0.00 0.00 0.00 5.01
305 306 2.223618 TGCATGATTTGATGATGTGGCG 60.224 45.455 0.00 0.00 0.00 5.69
306 307 2.390938 CATGATTTGATGATGTGGCGC 58.609 47.619 0.00 0.00 0.00 6.53
307 308 1.753930 TGATTTGATGATGTGGCGCT 58.246 45.000 7.64 0.00 0.00 5.92
308 309 1.402613 TGATTTGATGATGTGGCGCTG 59.597 47.619 7.64 0.00 0.00 5.18
309 310 1.402968 GATTTGATGATGTGGCGCTGT 59.597 47.619 7.64 0.00 0.00 4.40
310 311 1.246649 TTTGATGATGTGGCGCTGTT 58.753 45.000 7.64 0.00 0.00 3.16
311 312 0.522626 TTGATGATGTGGCGCTGTTG 59.477 50.000 7.64 0.00 0.00 3.33
312 313 1.226491 GATGATGTGGCGCTGTTGC 60.226 57.895 7.64 0.00 0.00 4.17
313 314 1.925415 GATGATGTGGCGCTGTTGCA 61.925 55.000 7.64 0.82 39.64 4.08
314 315 1.317431 ATGATGTGGCGCTGTTGCAT 61.317 50.000 7.64 4.90 39.64 3.96
315 316 1.515519 GATGTGGCGCTGTTGCATG 60.516 57.895 7.64 0.00 39.64 4.06
316 317 2.877360 GATGTGGCGCTGTTGCATGG 62.877 60.000 7.64 0.00 39.64 3.66
317 318 3.364441 GTGGCGCTGTTGCATGGA 61.364 61.111 7.64 0.00 39.64 3.41
318 319 3.057548 TGGCGCTGTTGCATGGAG 61.058 61.111 7.64 0.00 39.64 3.86
319 320 2.747460 GGCGCTGTTGCATGGAGA 60.747 61.111 7.64 0.00 39.64 3.71
320 321 2.758089 GGCGCTGTTGCATGGAGAG 61.758 63.158 7.64 0.00 39.64 3.20
321 322 2.758089 GCGCTGTTGCATGGAGAGG 61.758 63.158 0.00 0.00 39.64 3.69
322 323 1.078918 CGCTGTTGCATGGAGAGGA 60.079 57.895 0.00 0.00 39.64 3.71
323 324 0.674581 CGCTGTTGCATGGAGAGGAA 60.675 55.000 0.00 0.00 39.64 3.36
324 325 1.538047 GCTGTTGCATGGAGAGGAAA 58.462 50.000 0.00 0.00 39.41 3.13
325 326 1.888512 GCTGTTGCATGGAGAGGAAAA 59.111 47.619 0.00 0.00 39.41 2.29
326 327 2.352127 GCTGTTGCATGGAGAGGAAAAC 60.352 50.000 0.00 0.00 39.41 2.43
327 328 3.152341 CTGTTGCATGGAGAGGAAAACT 58.848 45.455 0.00 0.00 0.00 2.66
328 329 4.326826 CTGTTGCATGGAGAGGAAAACTA 58.673 43.478 0.00 0.00 0.00 2.24
329 330 4.326826 TGTTGCATGGAGAGGAAAACTAG 58.673 43.478 0.00 0.00 0.00 2.57
330 331 4.041567 TGTTGCATGGAGAGGAAAACTAGA 59.958 41.667 0.00 0.00 0.00 2.43
331 332 5.189180 GTTGCATGGAGAGGAAAACTAGAT 58.811 41.667 0.00 0.00 0.00 1.98
332 333 6.070251 TGTTGCATGGAGAGGAAAACTAGATA 60.070 38.462 0.00 0.00 0.00 1.98
333 334 6.166984 TGCATGGAGAGGAAAACTAGATAG 57.833 41.667 0.00 0.00 0.00 2.08
334 335 5.663106 TGCATGGAGAGGAAAACTAGATAGT 59.337 40.000 0.00 0.00 38.39 2.12
335 336 5.988561 GCATGGAGAGGAAAACTAGATAGTG 59.011 44.000 0.00 0.00 36.50 2.74
336 337 6.520272 CATGGAGAGGAAAACTAGATAGTGG 58.480 44.000 0.00 0.00 36.50 4.00
337 338 4.962995 TGGAGAGGAAAACTAGATAGTGGG 59.037 45.833 0.00 0.00 36.50 4.61
338 339 4.963628 GGAGAGGAAAACTAGATAGTGGGT 59.036 45.833 0.00 0.00 36.50 4.51
339 340 5.069383 GGAGAGGAAAACTAGATAGTGGGTC 59.931 48.000 0.00 0.00 36.50 4.46
340 341 4.645588 AGAGGAAAACTAGATAGTGGGTCG 59.354 45.833 0.00 0.00 36.50 4.79
341 342 4.351127 AGGAAAACTAGATAGTGGGTCGT 58.649 43.478 0.00 0.00 36.50 4.34
342 343 4.776308 AGGAAAACTAGATAGTGGGTCGTT 59.224 41.667 0.00 0.00 36.50 3.85
343 344 4.868734 GGAAAACTAGATAGTGGGTCGTTG 59.131 45.833 0.00 0.00 36.50 4.10
344 345 3.521947 AACTAGATAGTGGGTCGTTGC 57.478 47.619 0.00 0.00 36.50 4.17
345 346 2.736347 ACTAGATAGTGGGTCGTTGCT 58.264 47.619 0.00 0.00 34.72 3.91
346 347 3.894759 ACTAGATAGTGGGTCGTTGCTA 58.105 45.455 0.00 0.00 34.72 3.49
347 348 4.471548 ACTAGATAGTGGGTCGTTGCTAT 58.528 43.478 0.00 0.00 34.72 2.97
348 349 4.894114 ACTAGATAGTGGGTCGTTGCTATT 59.106 41.667 0.00 0.00 34.72 1.73
349 350 4.755266 AGATAGTGGGTCGTTGCTATTT 57.245 40.909 0.00 0.00 0.00 1.40
350 351 5.864418 AGATAGTGGGTCGTTGCTATTTA 57.136 39.130 0.00 0.00 0.00 1.40
351 352 6.229936 AGATAGTGGGTCGTTGCTATTTAA 57.770 37.500 0.00 0.00 0.00 1.52
352 353 6.281405 AGATAGTGGGTCGTTGCTATTTAAG 58.719 40.000 0.00 0.00 0.00 1.85
353 354 4.546829 AGTGGGTCGTTGCTATTTAAGA 57.453 40.909 0.00 0.00 0.00 2.10
354 355 4.901868 AGTGGGTCGTTGCTATTTAAGAA 58.098 39.130 0.00 0.00 0.00 2.52
355 356 4.935808 AGTGGGTCGTTGCTATTTAAGAAG 59.064 41.667 0.00 0.00 0.00 2.85
356 357 4.094442 GTGGGTCGTTGCTATTTAAGAAGG 59.906 45.833 0.00 0.00 0.00 3.46
357 358 4.020039 TGGGTCGTTGCTATTTAAGAAGGA 60.020 41.667 0.00 0.00 0.00 3.36
358 359 4.331992 GGGTCGTTGCTATTTAAGAAGGAC 59.668 45.833 0.00 0.00 33.80 3.85
359 360 4.032558 GGTCGTTGCTATTTAAGAAGGACG 59.967 45.833 0.00 0.00 34.50 4.79
360 361 4.860907 GTCGTTGCTATTTAAGAAGGACGA 59.139 41.667 0.00 0.00 0.00 4.20
361 362 5.004535 GTCGTTGCTATTTAAGAAGGACGAG 59.995 44.000 0.00 0.00 0.00 4.18
362 363 5.100259 CGTTGCTATTTAAGAAGGACGAGA 58.900 41.667 0.00 0.00 0.00 4.04
363 364 5.004535 CGTTGCTATTTAAGAAGGACGAGAC 59.995 44.000 0.00 0.00 0.00 3.36
364 365 5.916661 TGCTATTTAAGAAGGACGAGACT 57.083 39.130 0.00 0.00 0.00 3.24
365 366 6.282199 TGCTATTTAAGAAGGACGAGACTT 57.718 37.500 0.00 0.00 0.00 3.01
366 367 6.100004 TGCTATTTAAGAAGGACGAGACTTG 58.900 40.000 0.00 0.00 0.00 3.16
367 368 6.100668 GCTATTTAAGAAGGACGAGACTTGT 58.899 40.000 0.00 0.00 0.00 3.16
368 369 6.253942 GCTATTTAAGAAGGACGAGACTTGTC 59.746 42.308 13.74 13.74 35.60 3.18
369 370 5.786264 TTTAAGAAGGACGAGACTTGTCT 57.214 39.130 20.04 2.59 36.58 3.41
370 371 3.651803 AAGAAGGACGAGACTTGTCTG 57.348 47.619 20.04 3.80 36.58 3.51
371 372 1.271102 AGAAGGACGAGACTTGTCTGC 59.729 52.381 20.04 10.99 36.58 4.26
372 373 1.271102 GAAGGACGAGACTTGTCTGCT 59.729 52.381 20.04 8.85 36.58 4.24
373 374 0.885196 AGGACGAGACTTGTCTGCTC 59.115 55.000 20.04 5.89 36.58 4.26
374 375 0.109039 GGACGAGACTTGTCTGCTCC 60.109 60.000 20.04 7.60 36.58 4.70
375 376 0.109039 GACGAGACTTGTCTGCTCCC 60.109 60.000 14.68 0.00 33.54 4.30
376 377 0.540830 ACGAGACTTGTCTGCTCCCT 60.541 55.000 8.11 0.00 0.00 4.20
377 378 0.172352 CGAGACTTGTCTGCTCCCTC 59.828 60.000 8.11 0.00 0.00 4.30
378 379 0.534873 GAGACTTGTCTGCTCCCTCC 59.465 60.000 8.11 0.00 0.00 4.30
379 380 1.216710 GACTTGTCTGCTCCCTCCG 59.783 63.158 0.00 0.00 0.00 4.63
380 381 2.125350 CTTGTCTGCTCCCTCCGC 60.125 66.667 0.00 0.00 0.00 5.54
381 382 3.997064 CTTGTCTGCTCCCTCCGCG 62.997 68.421 0.00 0.00 0.00 6.46
383 384 4.803426 GTCTGCTCCCTCCGCGTG 62.803 72.222 4.92 0.00 0.00 5.34
398 399 3.127533 GTGTGCCCATCCGTGCTC 61.128 66.667 0.00 0.00 0.00 4.26
399 400 4.408821 TGTGCCCATCCGTGCTCC 62.409 66.667 0.00 0.00 0.00 4.70
403 404 4.838152 CCCATCCGTGCTCCCGTG 62.838 72.222 0.00 0.00 0.00 4.94
404 405 4.082523 CCATCCGTGCTCCCGTGT 62.083 66.667 0.00 0.00 0.00 4.49
405 406 2.717044 CCATCCGTGCTCCCGTGTA 61.717 63.158 0.00 0.00 0.00 2.90
406 407 1.518572 CATCCGTGCTCCCGTGTAC 60.519 63.158 0.00 0.00 0.00 2.90
407 408 3.060020 ATCCGTGCTCCCGTGTACG 62.060 63.158 0.00 0.00 43.66 3.67
408 409 4.047059 CCGTGCTCCCGTGTACGT 62.047 66.667 3.57 0.00 42.78 3.57
409 410 2.803670 CGTGCTCCCGTGTACGTG 60.804 66.667 0.00 0.00 40.25 4.49
410 411 2.431942 GTGCTCCCGTGTACGTGG 60.432 66.667 0.00 4.86 37.74 4.94
411 412 4.367023 TGCTCCCGTGTACGTGGC 62.367 66.667 0.00 5.36 37.74 5.01
412 413 4.065281 GCTCCCGTGTACGTGGCT 62.065 66.667 0.00 0.00 37.74 4.75
413 414 2.654877 CTCCCGTGTACGTGGCTT 59.345 61.111 0.00 0.00 37.74 4.35
414 415 1.736645 CTCCCGTGTACGTGGCTTG 60.737 63.158 0.00 0.00 37.74 4.01
415 416 2.149803 CTCCCGTGTACGTGGCTTGA 62.150 60.000 0.00 0.00 37.74 3.02
416 417 1.079405 CCCGTGTACGTGGCTTGAT 60.079 57.895 0.00 0.00 37.74 2.57
417 418 0.672401 CCCGTGTACGTGGCTTGATT 60.672 55.000 0.00 0.00 37.74 2.57
418 419 1.153353 CCGTGTACGTGGCTTGATTT 58.847 50.000 0.00 0.00 37.74 2.17
419 420 1.136085 CCGTGTACGTGGCTTGATTTG 60.136 52.381 0.00 0.00 37.74 2.32
420 421 1.795872 CGTGTACGTGGCTTGATTTGA 59.204 47.619 0.00 0.00 34.11 2.69
421 422 2.415168 CGTGTACGTGGCTTGATTTGAT 59.585 45.455 0.00 0.00 34.11 2.57
422 423 3.120338 CGTGTACGTGGCTTGATTTGATT 60.120 43.478 0.00 0.00 34.11 2.57
423 424 4.158384 GTGTACGTGGCTTGATTTGATTG 58.842 43.478 0.00 0.00 0.00 2.67
424 425 3.190327 TGTACGTGGCTTGATTTGATTGG 59.810 43.478 0.00 0.00 0.00 3.16
425 426 2.513753 ACGTGGCTTGATTTGATTGGA 58.486 42.857 0.00 0.00 0.00 3.53
426 427 2.890311 ACGTGGCTTGATTTGATTGGAA 59.110 40.909 0.00 0.00 0.00 3.53
427 428 3.244976 CGTGGCTTGATTTGATTGGAAC 58.755 45.455 0.00 0.00 0.00 3.62
428 429 3.305267 CGTGGCTTGATTTGATTGGAACA 60.305 43.478 0.00 0.00 0.00 3.18
441 442 1.551452 TGGAACAAAATAAGGCCCGG 58.449 50.000 0.00 0.00 31.92 5.73
442 443 0.174845 GGAACAAAATAAGGCCCGGC 59.825 55.000 0.00 0.00 0.00 6.13
458 459 4.027884 GCCCCACGCCCTTAAAAT 57.972 55.556 0.00 0.00 0.00 1.82
459 460 1.813859 GCCCCACGCCCTTAAAATC 59.186 57.895 0.00 0.00 0.00 2.17
460 461 0.968393 GCCCCACGCCCTTAAAATCA 60.968 55.000 0.00 0.00 0.00 2.57
461 462 1.102978 CCCCACGCCCTTAAAATCAG 58.897 55.000 0.00 0.00 0.00 2.90
462 463 1.102978 CCCACGCCCTTAAAATCAGG 58.897 55.000 0.00 0.00 0.00 3.86
488 489 9.273137 GGGGGAGATGATTATATTAGAAAGAGA 57.727 37.037 0.00 0.00 0.00 3.10
524 525 3.669354 CGTAGGATGAAGTGGGAGC 57.331 57.895 0.00 0.00 0.00 4.70
525 526 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
526 527 1.471676 CGTAGGATGAAGTGGGAGCAC 60.472 57.143 0.00 0.00 0.00 4.40
527 528 1.555075 GTAGGATGAAGTGGGAGCACA 59.445 52.381 0.00 0.00 0.00 4.57
528 529 0.617413 AGGATGAAGTGGGAGCACAG 59.383 55.000 0.00 0.00 0.00 3.66
529 530 0.615331 GGATGAAGTGGGAGCACAGA 59.385 55.000 0.00 0.00 0.00 3.41
530 531 1.211457 GGATGAAGTGGGAGCACAGAT 59.789 52.381 0.00 0.00 0.00 2.90
531 532 2.286872 GATGAAGTGGGAGCACAGATG 58.713 52.381 0.00 0.00 0.00 2.90
532 533 0.325933 TGAAGTGGGAGCACAGATGG 59.674 55.000 0.00 0.00 0.00 3.51
533 534 0.615331 GAAGTGGGAGCACAGATGGA 59.385 55.000 0.00 0.00 0.00 3.41
534 535 1.003580 GAAGTGGGAGCACAGATGGAA 59.996 52.381 0.00 0.00 0.00 3.53
535 536 0.617413 AGTGGGAGCACAGATGGAAG 59.383 55.000 0.00 0.00 0.00 3.46
536 537 1.028868 GTGGGAGCACAGATGGAAGC 61.029 60.000 0.00 0.00 0.00 3.86
537 538 1.300963 GGGAGCACAGATGGAAGCA 59.699 57.895 0.00 0.00 0.00 3.91
538 539 0.106819 GGGAGCACAGATGGAAGCAT 60.107 55.000 0.00 0.00 0.00 3.79
539 540 1.022735 GGAGCACAGATGGAAGCATG 58.977 55.000 0.00 0.00 0.00 4.06
540 541 1.022735 GAGCACAGATGGAAGCATGG 58.977 55.000 0.00 0.00 0.00 3.66
541 542 0.395311 AGCACAGATGGAAGCATGGG 60.395 55.000 0.00 0.00 0.00 4.00
542 543 1.389609 GCACAGATGGAAGCATGGGG 61.390 60.000 0.00 0.00 0.00 4.96
543 544 0.256752 CACAGATGGAAGCATGGGGA 59.743 55.000 0.00 0.00 0.00 4.81
544 545 0.549950 ACAGATGGAAGCATGGGGAG 59.450 55.000 0.00 0.00 0.00 4.30
545 546 0.178998 CAGATGGAAGCATGGGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
546 547 1.152368 GATGGAAGCATGGGGAGGG 59.848 63.158 0.00 0.00 0.00 4.30
547 548 1.309013 ATGGAAGCATGGGGAGGGA 60.309 57.895 0.00 0.00 0.00 4.20
548 549 1.358830 ATGGAAGCATGGGGAGGGAG 61.359 60.000 0.00 0.00 0.00 4.30
549 550 2.194326 GAAGCATGGGGAGGGAGC 59.806 66.667 0.00 0.00 0.00 4.70
550 551 2.614969 AAGCATGGGGAGGGAGCA 60.615 61.111 0.00 0.00 0.00 4.26
551 552 2.621517 GAAGCATGGGGAGGGAGCAG 62.622 65.000 0.00 0.00 0.00 4.24
552 553 4.201122 GCATGGGGAGGGAGCAGG 62.201 72.222 0.00 0.00 0.00 4.85
553 554 4.201122 CATGGGGAGGGAGCAGGC 62.201 72.222 0.00 0.00 0.00 4.85
554 555 4.765970 ATGGGGAGGGAGCAGGCA 62.766 66.667 0.00 0.00 0.00 4.75
556 557 4.120755 GGGGAGGGAGCAGGCAAG 62.121 72.222 0.00 0.00 0.00 4.01
557 558 4.811364 GGGAGGGAGCAGGCAAGC 62.811 72.222 0.00 0.00 0.00 4.01
559 560 2.438075 GAGGGAGCAGGCAAGCTG 60.438 66.667 9.25 0.00 46.75 4.24
560 561 3.991725 GAGGGAGCAGGCAAGCTGG 62.992 68.421 9.25 0.00 46.75 4.85
561 562 4.039092 GGGAGCAGGCAAGCTGGA 62.039 66.667 9.25 0.00 46.75 3.86
562 563 2.274760 GGAGCAGGCAAGCTGGAT 59.725 61.111 9.25 0.00 46.75 3.41
563 564 1.823041 GGAGCAGGCAAGCTGGATC 60.823 63.158 9.25 0.00 46.75 3.36
564 565 1.823041 GAGCAGGCAAGCTGGATCC 60.823 63.158 4.20 4.20 46.75 3.36
565 566 2.044650 GCAGGCAAGCTGGATCCA 60.045 61.111 15.27 15.27 0.00 3.41
566 567 1.455217 GCAGGCAAGCTGGATCCAT 60.455 57.895 16.63 0.00 0.00 3.41
567 568 1.041447 GCAGGCAAGCTGGATCCATT 61.041 55.000 16.63 4.60 0.00 3.16
568 569 1.481871 CAGGCAAGCTGGATCCATTT 58.518 50.000 16.63 10.31 0.00 2.32
569 570 2.658285 CAGGCAAGCTGGATCCATTTA 58.342 47.619 16.63 0.00 0.00 1.40
570 571 3.025978 CAGGCAAGCTGGATCCATTTAA 58.974 45.455 16.63 0.00 0.00 1.52
571 572 3.067742 CAGGCAAGCTGGATCCATTTAAG 59.932 47.826 16.63 4.00 0.00 1.85
572 573 3.053395 AGGCAAGCTGGATCCATTTAAGA 60.053 43.478 16.63 0.00 0.00 2.10
573 574 3.701040 GGCAAGCTGGATCCATTTAAGAA 59.299 43.478 16.63 0.00 0.00 2.52
574 575 4.343239 GGCAAGCTGGATCCATTTAAGAAT 59.657 41.667 16.63 0.00 0.00 2.40
575 576 5.536161 GGCAAGCTGGATCCATTTAAGAATA 59.464 40.000 16.63 0.00 0.00 1.75
576 577 6.294397 GGCAAGCTGGATCCATTTAAGAATAG 60.294 42.308 16.63 0.00 0.00 1.73
577 578 6.488006 GCAAGCTGGATCCATTTAAGAATAGA 59.512 38.462 16.63 0.00 0.00 1.98
578 579 7.308469 GCAAGCTGGATCCATTTAAGAATAGAG 60.308 40.741 16.63 0.00 0.00 2.43
579 580 6.777782 AGCTGGATCCATTTAAGAATAGAGG 58.222 40.000 16.63 0.00 0.00 3.69
580 581 5.942826 GCTGGATCCATTTAAGAATAGAGGG 59.057 44.000 16.63 0.00 0.00 4.30
584 585 9.852784 TGGATCCATTTAAGAATAGAGGGTATA 57.147 33.333 11.44 0.00 0.00 1.47
705 709 9.838339 ATTCACTATATCTTGAAGACGGAAAAT 57.162 29.630 0.00 0.00 35.25 1.82
731 738 4.216708 TGCATCCTCATCCATTTGCATTA 58.783 39.130 0.00 0.00 35.36 1.90
733 740 4.986659 GCATCCTCATCCATTTGCATTAAC 59.013 41.667 0.00 0.00 0.00 2.01
782 789 5.163457 TGTTGCACATAGGATTCGTCTCATA 60.163 40.000 0.00 0.00 0.00 2.15
932 940 3.131577 GCAAGCCATCAATTGAGGAATCA 59.868 43.478 21.14 0.00 0.00 2.57
935 943 3.703052 AGCCATCAATTGAGGAATCAACC 59.297 43.478 21.14 4.97 31.89 3.77
942 950 5.241506 TCAATTGAGGAATCAACCACTGTTC 59.758 40.000 3.38 0.00 30.42 3.18
971 979 2.959516 TGTTCTTGTGATCTGCGGTAG 58.040 47.619 0.00 0.00 0.00 3.18
999 1007 2.474410 AGTCGAGGGAAACACCATTC 57.526 50.000 0.00 0.00 41.20 2.67
1061 1069 0.940126 CTGGCTATTTTCTGCGCGAT 59.060 50.000 12.10 0.00 0.00 4.58
1423 1437 6.018669 GTGAAAACTCCTTTACACTGTGAGAG 60.019 42.308 15.86 13.20 0.00 3.20
1501 1515 4.796830 ACGTACATATGCGTGTCTTTGTAG 59.203 41.667 1.58 0.00 46.07 2.74
1553 1567 8.411683 ACAGAATGATGGCAGAAGAAATAAATC 58.588 33.333 0.00 0.00 39.69 2.17
1572 1586 0.725686 CGATGCTTGGCTCAAGTCTG 59.274 55.000 14.04 2.35 42.77 3.51
1573 1587 1.673923 CGATGCTTGGCTCAAGTCTGA 60.674 52.381 14.04 0.98 42.77 3.27
1653 1682 9.121517 CAGCAACATCTATTGTTTAGTTTTGAG 57.878 33.333 0.00 0.00 46.51 3.02
1696 1725 1.133976 AGCCAGTGGAAGCATATCACC 60.134 52.381 15.20 0.00 32.29 4.02
1789 1818 7.227910 GTGGACACTGAAGTATTTACCTTTTGA 59.772 37.037 0.00 0.00 0.00 2.69
1821 1850 8.964420 TTTTAGCAATTTCAGTAATACACAGC 57.036 30.769 0.00 0.00 0.00 4.40
1832 1861 7.330262 TCAGTAATACACAGCAATTCAGATGA 58.670 34.615 0.00 0.00 0.00 2.92
1843 1872 9.846248 ACAGCAATTCAGATGATTTTAAAGTAC 57.154 29.630 0.00 0.00 0.00 2.73
1942 1971 3.443681 ACCAAAACTCACTGTGTTTCTGG 59.556 43.478 21.28 21.28 39.10 3.86
2046 2076 9.104965 CAATACCTTGTGTTAGAATAATCCGAA 57.895 33.333 0.00 0.00 0.00 4.30
2088 2118 0.816825 CAAGCAGTCACACAGGCACT 60.817 55.000 0.00 0.00 43.88 4.40
2173 2211 0.624500 AGGCACACCTCCCCATGTAT 60.625 55.000 0.00 0.00 46.34 2.29
2181 2219 4.168675 ACACCTCCCCATGTATCAAATCAT 59.831 41.667 0.00 0.00 0.00 2.45
2211 2249 5.188434 CAATCTGCAATAAGACTCCAAGGA 58.812 41.667 0.00 0.00 0.00 3.36
2219 2257 1.540267 AGACTCCAAGGACACGAGAG 58.460 55.000 0.00 0.00 0.00 3.20
2268 2306 4.489771 GGTCATCCCTGCCACGGG 62.490 72.222 0.00 0.00 46.13 5.28
2294 2333 2.432510 GGATTGTCCCTCTCGTGATCTT 59.567 50.000 0.00 0.00 0.00 2.40
2312 2355 8.350722 CGTGATCTTTGTCTTAGCCTATAACTA 58.649 37.037 0.00 0.00 0.00 2.24
2342 2385 2.104111 TCTATTTGGCTACCCGTGATGG 59.896 50.000 0.00 0.00 37.55 3.51
2354 2397 7.177921 GGCTACCCGTGATGGCTATATATAATA 59.822 40.741 0.00 0.00 35.87 0.98
2355 2398 8.750298 GCTACCCGTGATGGCTATATATAATAT 58.250 37.037 0.00 0.00 35.87 1.28
2417 2467 5.063691 CGTACCGCTAATTACAAATCCAACA 59.936 40.000 0.00 0.00 0.00 3.33
2435 2485 4.870426 CCAACAGTAGCACAACCTATACAG 59.130 45.833 0.00 0.00 0.00 2.74
2445 2495 5.753921 GCACAACCTATACAGTGAATACTCC 59.246 44.000 0.00 0.00 34.07 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.661187 CATGATTTGCAATAGTCTAGTCAAATC 57.339 33.333 22.11 22.11 44.60 2.17
2 3 8.627403 CCATGATTTGCAATAGTCTAGTCAAAT 58.373 33.333 0.00 13.02 37.00 2.32
3 4 7.611467 ACCATGATTTGCAATAGTCTAGTCAAA 59.389 33.333 0.00 7.11 0.00 2.69
4 5 7.112122 ACCATGATTTGCAATAGTCTAGTCAA 58.888 34.615 0.00 0.00 0.00 3.18
5 6 6.653020 ACCATGATTTGCAATAGTCTAGTCA 58.347 36.000 0.00 0.00 0.00 3.41
6 7 6.989169 AGACCATGATTTGCAATAGTCTAGTC 59.011 38.462 0.00 3.04 34.43 2.59
7 8 6.893583 AGACCATGATTTGCAATAGTCTAGT 58.106 36.000 0.00 0.00 34.43 2.57
8 9 7.171167 CAGAGACCATGATTTGCAATAGTCTAG 59.829 40.741 0.00 0.56 35.56 2.43
9 10 6.988580 CAGAGACCATGATTTGCAATAGTCTA 59.011 38.462 0.00 0.00 35.56 2.59
10 11 5.821470 CAGAGACCATGATTTGCAATAGTCT 59.179 40.000 0.00 6.61 37.08 3.24
11 12 5.819379 TCAGAGACCATGATTTGCAATAGTC 59.181 40.000 0.00 0.00 0.00 2.59
12 13 5.748402 TCAGAGACCATGATTTGCAATAGT 58.252 37.500 0.00 0.00 0.00 2.12
13 14 6.485648 TGATCAGAGACCATGATTTGCAATAG 59.514 38.462 0.00 0.00 37.52 1.73
14 15 6.358991 TGATCAGAGACCATGATTTGCAATA 58.641 36.000 0.00 0.00 37.52 1.90
15 16 5.198207 TGATCAGAGACCATGATTTGCAAT 58.802 37.500 0.00 0.00 37.52 3.56
16 17 4.591929 TGATCAGAGACCATGATTTGCAA 58.408 39.130 0.00 0.00 37.52 4.08
17 18 4.224991 TGATCAGAGACCATGATTTGCA 57.775 40.909 0.00 0.00 37.52 4.08
18 19 4.215827 GGATGATCAGAGACCATGATTTGC 59.784 45.833 0.09 0.00 37.52 3.68
19 20 5.622180 AGGATGATCAGAGACCATGATTTG 58.378 41.667 0.09 0.00 37.52 2.32
20 21 5.908562 AGGATGATCAGAGACCATGATTT 57.091 39.130 0.09 0.00 37.52 2.17
21 22 5.908562 AAGGATGATCAGAGACCATGATT 57.091 39.130 0.09 0.00 37.52 2.57
22 23 5.908562 AAAGGATGATCAGAGACCATGAT 57.091 39.130 0.09 0.00 40.08 2.45
23 24 5.221601 GCTAAAGGATGATCAGAGACCATGA 60.222 44.000 0.09 0.00 0.00 3.07
24 25 4.996122 GCTAAAGGATGATCAGAGACCATG 59.004 45.833 0.09 0.00 0.00 3.66
25 26 4.657504 TGCTAAAGGATGATCAGAGACCAT 59.342 41.667 0.09 0.00 0.00 3.55
26 27 4.033009 TGCTAAAGGATGATCAGAGACCA 58.967 43.478 0.09 0.00 0.00 4.02
27 28 4.679373 TGCTAAAGGATGATCAGAGACC 57.321 45.455 0.09 2.39 0.00 3.85
28 29 5.609423 ACATGCTAAAGGATGATCAGAGAC 58.391 41.667 17.11 0.00 45.22 3.36
29 30 5.883685 ACATGCTAAAGGATGATCAGAGA 57.116 39.130 17.11 0.00 45.22 3.10
30 31 7.160049 ACATACATGCTAAAGGATGATCAGAG 58.840 38.462 17.11 4.67 45.22 3.35
31 32 7.071069 ACATACATGCTAAAGGATGATCAGA 57.929 36.000 17.11 0.00 45.22 3.27
32 33 7.741027 AACATACATGCTAAAGGATGATCAG 57.259 36.000 17.11 7.25 45.22 2.90
33 34 8.523915 AAAACATACATGCTAAAGGATGATCA 57.476 30.769 17.11 0.00 45.22 2.92
40 41 9.009327 CGACATTTAAAACATACATGCTAAAGG 57.991 33.333 0.00 0.00 0.00 3.11
41 42 9.767684 TCGACATTTAAAACATACATGCTAAAG 57.232 29.630 0.00 0.00 0.00 1.85
42 43 9.549509 GTCGACATTTAAAACATACATGCTAAA 57.450 29.630 11.55 0.00 0.00 1.85
43 44 8.178964 GGTCGACATTTAAAACATACATGCTAA 58.821 33.333 18.91 0.00 0.00 3.09
44 45 7.551262 AGGTCGACATTTAAAACATACATGCTA 59.449 33.333 18.91 0.00 0.00 3.49
45 46 6.374333 AGGTCGACATTTAAAACATACATGCT 59.626 34.615 18.91 0.00 0.00 3.79
46 47 6.551736 AGGTCGACATTTAAAACATACATGC 58.448 36.000 18.91 0.00 0.00 4.06
47 48 9.702726 CTAAGGTCGACATTTAAAACATACATG 57.297 33.333 21.58 0.00 0.00 3.21
48 49 8.395633 GCTAAGGTCGACATTTAAAACATACAT 58.604 33.333 21.58 0.00 0.00 2.29
49 50 7.412129 CGCTAAGGTCGACATTTAAAACATACA 60.412 37.037 21.58 0.00 0.00 2.29
50 51 6.898189 CGCTAAGGTCGACATTTAAAACATAC 59.102 38.462 21.58 0.00 0.00 2.39
51 52 6.812656 TCGCTAAGGTCGACATTTAAAACATA 59.187 34.615 21.58 0.00 0.00 2.29
52 53 5.640357 TCGCTAAGGTCGACATTTAAAACAT 59.360 36.000 21.58 0.00 0.00 2.71
53 54 4.989797 TCGCTAAGGTCGACATTTAAAACA 59.010 37.500 21.58 0.43 0.00 2.83
54 55 5.520022 TCGCTAAGGTCGACATTTAAAAC 57.480 39.130 21.58 5.66 0.00 2.43
64 65 1.201647 CAAAGAGGTCGCTAAGGTCGA 59.798 52.381 0.00 0.00 0.00 4.20
65 66 1.067776 ACAAAGAGGTCGCTAAGGTCG 60.068 52.381 0.00 0.00 0.00 4.79
66 67 2.745515 ACAAAGAGGTCGCTAAGGTC 57.254 50.000 0.00 0.00 0.00 3.85
67 68 4.820894 AATACAAAGAGGTCGCTAAGGT 57.179 40.909 0.00 0.00 0.00 3.50
68 69 8.762426 GTTATTAATACAAAGAGGTCGCTAAGG 58.238 37.037 0.00 0.00 0.00 2.69
69 70 9.309516 TGTTATTAATACAAAGAGGTCGCTAAG 57.690 33.333 0.00 0.00 0.00 2.18
70 71 9.656040 TTGTTATTAATACAAAGAGGTCGCTAA 57.344 29.630 0.00 0.00 32.89 3.09
71 72 9.309516 CTTGTTATTAATACAAAGAGGTCGCTA 57.690 33.333 9.37 0.00 35.28 4.26
72 73 8.038944 TCTTGTTATTAATACAAAGAGGTCGCT 58.961 33.333 12.13 0.00 35.28 4.93
73 74 8.193250 TCTTGTTATTAATACAAAGAGGTCGC 57.807 34.615 12.13 0.00 35.28 5.19
82 83 9.051679 CGGGACATCATCTTGTTATTAATACAA 57.948 33.333 0.00 3.12 34.55 2.41
83 84 7.172532 GCGGGACATCATCTTGTTATTAATACA 59.827 37.037 0.00 0.00 0.00 2.29
84 85 7.519002 GCGGGACATCATCTTGTTATTAATAC 58.481 38.462 0.00 0.00 0.00 1.89
85 86 6.367695 CGCGGGACATCATCTTGTTATTAATA 59.632 38.462 0.00 0.00 0.00 0.98
86 87 5.179368 CGCGGGACATCATCTTGTTATTAAT 59.821 40.000 0.00 0.00 0.00 1.40
87 88 4.509970 CGCGGGACATCATCTTGTTATTAA 59.490 41.667 0.00 0.00 0.00 1.40
88 89 4.055360 CGCGGGACATCATCTTGTTATTA 58.945 43.478 0.00 0.00 0.00 0.98
89 90 2.872245 CGCGGGACATCATCTTGTTATT 59.128 45.455 0.00 0.00 0.00 1.40
90 91 2.483876 CGCGGGACATCATCTTGTTAT 58.516 47.619 0.00 0.00 0.00 1.89
91 92 1.934589 CGCGGGACATCATCTTGTTA 58.065 50.000 0.00 0.00 0.00 2.41
92 93 1.369091 GCGCGGGACATCATCTTGTT 61.369 55.000 8.83 0.00 0.00 2.83
93 94 1.815421 GCGCGGGACATCATCTTGT 60.815 57.895 8.83 0.00 0.00 3.16
94 95 1.368345 TTGCGCGGGACATCATCTTG 61.368 55.000 8.83 0.00 0.00 3.02
95 96 0.464373 ATTGCGCGGGACATCATCTT 60.464 50.000 8.83 0.00 0.00 2.40
96 97 1.146930 ATTGCGCGGGACATCATCT 59.853 52.632 8.83 0.00 0.00 2.90
97 98 1.280746 CATTGCGCGGGACATCATC 59.719 57.895 8.83 0.00 0.00 2.92
98 99 2.837883 GCATTGCGCGGGACATCAT 61.838 57.895 8.83 0.00 0.00 2.45
99 100 3.507924 GCATTGCGCGGGACATCA 61.508 61.111 8.83 0.00 0.00 3.07
111 112 1.213537 CAAGGTTCCCGCAGCATTG 59.786 57.895 0.00 0.00 0.00 2.82
112 113 0.037590 TACAAGGTTCCCGCAGCATT 59.962 50.000 0.00 0.00 0.00 3.56
113 114 0.037590 TTACAAGGTTCCCGCAGCAT 59.962 50.000 0.00 0.00 0.00 3.79
114 115 0.179015 TTTACAAGGTTCCCGCAGCA 60.179 50.000 0.00 0.00 0.00 4.41
115 116 0.955905 TTTTACAAGGTTCCCGCAGC 59.044 50.000 0.00 0.00 0.00 5.25
116 117 3.934457 ATTTTTACAAGGTTCCCGCAG 57.066 42.857 0.00 0.00 0.00 5.18
117 118 4.767928 ACATATTTTTACAAGGTTCCCGCA 59.232 37.500 0.00 0.00 0.00 5.69
118 119 5.319140 ACATATTTTTACAAGGTTCCCGC 57.681 39.130 0.00 0.00 0.00 6.13
119 120 7.283580 TCCATACATATTTTTACAAGGTTCCCG 59.716 37.037 0.00 0.00 0.00 5.14
120 121 8.528044 TCCATACATATTTTTACAAGGTTCCC 57.472 34.615 0.00 0.00 0.00 3.97
135 136 9.830186 AGTCTTCTACCACTTATCCATACATAT 57.170 33.333 0.00 0.00 0.00 1.78
137 138 9.656323 TTAGTCTTCTACCACTTATCCATACAT 57.344 33.333 0.00 0.00 0.00 2.29
138 139 9.483489 TTTAGTCTTCTACCACTTATCCATACA 57.517 33.333 0.00 0.00 0.00 2.29
186 187 9.614792 GGGATTATAACTCATGTAAGACACTTT 57.385 33.333 0.00 0.00 0.00 2.66
187 188 7.926555 CGGGATTATAACTCATGTAAGACACTT 59.073 37.037 0.00 0.00 0.00 3.16
188 189 7.434492 CGGGATTATAACTCATGTAAGACACT 58.566 38.462 0.00 0.00 0.00 3.55
189 190 6.145696 GCGGGATTATAACTCATGTAAGACAC 59.854 42.308 0.00 0.00 0.00 3.67
190 191 6.220930 GCGGGATTATAACTCATGTAAGACA 58.779 40.000 0.00 0.00 0.00 3.41
191 192 5.345202 CGCGGGATTATAACTCATGTAAGAC 59.655 44.000 0.00 0.00 0.00 3.01
192 193 5.242171 TCGCGGGATTATAACTCATGTAAGA 59.758 40.000 6.13 0.00 0.00 2.10
193 194 5.466819 TCGCGGGATTATAACTCATGTAAG 58.533 41.667 6.13 0.00 0.00 2.34
194 195 5.456548 TCGCGGGATTATAACTCATGTAA 57.543 39.130 6.13 0.00 0.00 2.41
195 196 5.456548 TTCGCGGGATTATAACTCATGTA 57.543 39.130 6.13 0.00 0.00 2.29
196 197 4.330944 TTCGCGGGATTATAACTCATGT 57.669 40.909 6.13 0.00 0.00 3.21
197 198 5.666969 TTTTCGCGGGATTATAACTCATG 57.333 39.130 6.13 0.00 0.00 3.07
217 218 2.297701 ACACCTCACGCATGACTTTTT 58.702 42.857 0.00 0.00 0.00 1.94
218 219 1.967319 ACACCTCACGCATGACTTTT 58.033 45.000 0.00 0.00 0.00 2.27
219 220 2.831685 TACACCTCACGCATGACTTT 57.168 45.000 0.00 0.00 0.00 2.66
220 221 2.621338 CATACACCTCACGCATGACTT 58.379 47.619 0.00 0.00 0.00 3.01
221 222 1.740380 GCATACACCTCACGCATGACT 60.740 52.381 0.00 0.00 0.00 3.41
222 223 0.652592 GCATACACCTCACGCATGAC 59.347 55.000 0.00 0.00 0.00 3.06
223 224 0.536724 AGCATACACCTCACGCATGA 59.463 50.000 0.00 0.00 0.00 3.07
224 225 1.372582 AAGCATACACCTCACGCATG 58.627 50.000 0.00 0.00 0.00 4.06
225 226 2.113860 AAAGCATACACCTCACGCAT 57.886 45.000 0.00 0.00 0.00 4.73
226 227 2.289133 TGTAAAGCATACACCTCACGCA 60.289 45.455 0.00 0.00 0.00 5.24
227 228 2.343101 TGTAAAGCATACACCTCACGC 58.657 47.619 0.00 0.00 0.00 5.34
228 229 4.180817 TCATGTAAAGCATACACCTCACG 58.819 43.478 4.71 0.00 35.74 4.35
229 230 5.874810 TCTTCATGTAAAGCATACACCTCAC 59.125 40.000 4.71 0.00 35.74 3.51
230 231 6.048732 TCTTCATGTAAAGCATACACCTCA 57.951 37.500 4.71 0.00 35.74 3.86
231 232 6.256757 GTCTCTTCATGTAAAGCATACACCTC 59.743 42.308 4.71 0.00 35.74 3.85
232 233 6.109359 GTCTCTTCATGTAAAGCATACACCT 58.891 40.000 4.71 0.00 35.74 4.00
233 234 5.874810 TGTCTCTTCATGTAAAGCATACACC 59.125 40.000 4.71 0.00 35.74 4.16
234 235 6.968131 TGTCTCTTCATGTAAAGCATACAC 57.032 37.500 4.71 0.00 35.74 2.90
235 236 7.977789 TTTGTCTCTTCATGTAAAGCATACA 57.022 32.000 5.04 5.04 35.74 2.29
236 237 7.912250 CCATTTGTCTCTTCATGTAAAGCATAC 59.088 37.037 0.00 0.00 35.74 2.39
237 238 7.828717 TCCATTTGTCTCTTCATGTAAAGCATA 59.171 33.333 0.00 0.00 35.74 3.14
238 239 6.660521 TCCATTTGTCTCTTCATGTAAAGCAT 59.339 34.615 0.00 0.00 38.60 3.79
239 240 6.003326 TCCATTTGTCTCTTCATGTAAAGCA 58.997 36.000 0.00 0.00 0.00 3.91
240 241 6.500684 TCCATTTGTCTCTTCATGTAAAGC 57.499 37.500 0.00 0.00 0.00 3.51
241 242 9.748708 TTTTTCCATTTGTCTCTTCATGTAAAG 57.251 29.630 0.00 0.00 0.00 1.85
242 243 9.748708 CTTTTTCCATTTGTCTCTTCATGTAAA 57.251 29.630 0.00 0.00 0.00 2.01
243 244 8.912988 ACTTTTTCCATTTGTCTCTTCATGTAA 58.087 29.630 0.00 0.00 0.00 2.41
244 245 8.463930 ACTTTTTCCATTTGTCTCTTCATGTA 57.536 30.769 0.00 0.00 0.00 2.29
245 246 7.352079 ACTTTTTCCATTTGTCTCTTCATGT 57.648 32.000 0.00 0.00 0.00 3.21
246 247 9.918630 ATTACTTTTTCCATTTGTCTCTTCATG 57.081 29.630 0.00 0.00 0.00 3.07
260 261 8.736244 GCATGTAGTCCTAAATTACTTTTTCCA 58.264 33.333 0.00 0.00 0.00 3.53
261 262 8.736244 TGCATGTAGTCCTAAATTACTTTTTCC 58.264 33.333 0.00 0.00 0.00 3.13
264 265 9.461312 TCATGCATGTAGTCCTAAATTACTTTT 57.539 29.630 25.43 0.00 0.00 2.27
265 266 9.632638 ATCATGCATGTAGTCCTAAATTACTTT 57.367 29.630 25.43 0.00 0.00 2.66
266 267 9.632638 AATCATGCATGTAGTCCTAAATTACTT 57.367 29.630 25.43 0.00 0.00 2.24
267 268 9.632638 AAATCATGCATGTAGTCCTAAATTACT 57.367 29.630 25.43 0.00 0.00 2.24
268 269 9.669353 CAAATCATGCATGTAGTCCTAAATTAC 57.331 33.333 25.43 0.00 0.00 1.89
269 270 9.625747 TCAAATCATGCATGTAGTCCTAAATTA 57.374 29.630 25.43 2.45 0.00 1.40
270 271 8.523915 TCAAATCATGCATGTAGTCCTAAATT 57.476 30.769 25.43 11.85 0.00 1.82
271 272 8.573885 CATCAAATCATGCATGTAGTCCTAAAT 58.426 33.333 25.43 6.26 0.00 1.40
272 273 7.774625 TCATCAAATCATGCATGTAGTCCTAAA 59.225 33.333 25.43 3.97 0.00 1.85
273 274 7.281841 TCATCAAATCATGCATGTAGTCCTAA 58.718 34.615 25.43 4.73 0.00 2.69
274 275 6.829849 TCATCAAATCATGCATGTAGTCCTA 58.170 36.000 25.43 5.50 0.00 2.94
275 276 5.687780 TCATCAAATCATGCATGTAGTCCT 58.312 37.500 25.43 6.20 0.00 3.85
276 277 6.016527 ACATCATCAAATCATGCATGTAGTCC 60.017 38.462 25.43 0.00 29.85 3.85
277 278 6.856426 CACATCATCAAATCATGCATGTAGTC 59.144 38.462 25.43 0.00 30.19 2.59
278 279 6.238925 CCACATCATCAAATCATGCATGTAGT 60.239 38.462 25.43 10.87 30.19 2.73
279 280 6.149633 CCACATCATCAAATCATGCATGTAG 58.850 40.000 25.43 13.81 30.19 2.74
280 281 5.508320 GCCACATCATCAAATCATGCATGTA 60.508 40.000 25.43 13.19 30.19 2.29
281 282 4.739436 GCCACATCATCAAATCATGCATGT 60.739 41.667 25.43 10.91 30.81 3.21
282 283 3.740832 GCCACATCATCAAATCATGCATG 59.259 43.478 21.07 21.07 0.00 4.06
283 284 3.552068 CGCCACATCATCAAATCATGCAT 60.552 43.478 0.00 0.00 0.00 3.96
284 285 2.223618 CGCCACATCATCAAATCATGCA 60.224 45.455 0.00 0.00 0.00 3.96
285 286 2.390938 CGCCACATCATCAAATCATGC 58.609 47.619 0.00 0.00 0.00 4.06
286 287 2.034179 AGCGCCACATCATCAAATCATG 59.966 45.455 2.29 0.00 0.00 3.07
287 288 2.034179 CAGCGCCACATCATCAAATCAT 59.966 45.455 2.29 0.00 0.00 2.45
288 289 1.402613 CAGCGCCACATCATCAAATCA 59.597 47.619 2.29 0.00 0.00 2.57
289 290 1.402968 ACAGCGCCACATCATCAAATC 59.597 47.619 2.29 0.00 0.00 2.17
290 291 1.466856 ACAGCGCCACATCATCAAAT 58.533 45.000 2.29 0.00 0.00 2.32
291 292 1.068402 CAACAGCGCCACATCATCAAA 60.068 47.619 2.29 0.00 0.00 2.69
292 293 0.522626 CAACAGCGCCACATCATCAA 59.477 50.000 2.29 0.00 0.00 2.57
293 294 1.925415 GCAACAGCGCCACATCATCA 61.925 55.000 2.29 0.00 0.00 3.07
294 295 1.226491 GCAACAGCGCCACATCATC 60.226 57.895 2.29 0.00 0.00 2.92
295 296 1.317431 ATGCAACAGCGCCACATCAT 61.317 50.000 2.29 0.00 0.00 2.45
296 297 1.972752 ATGCAACAGCGCCACATCA 60.973 52.632 2.29 0.00 0.00 3.07
297 298 1.515519 CATGCAACAGCGCCACATC 60.516 57.895 2.29 0.00 0.00 3.06
298 299 2.569657 CATGCAACAGCGCCACAT 59.430 55.556 2.29 0.00 0.00 3.21
299 300 3.672447 CCATGCAACAGCGCCACA 61.672 61.111 2.29 0.00 0.00 4.17
300 301 3.332493 CTCCATGCAACAGCGCCAC 62.332 63.158 2.29 0.00 0.00 5.01
301 302 3.057548 CTCCATGCAACAGCGCCA 61.058 61.111 2.29 0.00 0.00 5.69
302 303 2.747460 TCTCCATGCAACAGCGCC 60.747 61.111 2.29 0.00 0.00 6.53
303 304 2.758089 CCTCTCCATGCAACAGCGC 61.758 63.158 0.00 0.00 0.00 5.92
304 305 0.674581 TTCCTCTCCATGCAACAGCG 60.675 55.000 0.00 0.00 0.00 5.18
305 306 1.538047 TTTCCTCTCCATGCAACAGC 58.462 50.000 0.00 0.00 0.00 4.40
306 307 3.152341 AGTTTTCCTCTCCATGCAACAG 58.848 45.455 0.00 0.00 0.00 3.16
307 308 3.228188 AGTTTTCCTCTCCATGCAACA 57.772 42.857 0.00 0.00 0.00 3.33
308 309 4.579869 TCTAGTTTTCCTCTCCATGCAAC 58.420 43.478 0.00 0.00 0.00 4.17
309 310 4.908601 TCTAGTTTTCCTCTCCATGCAA 57.091 40.909 0.00 0.00 0.00 4.08
310 311 5.663106 ACTATCTAGTTTTCCTCTCCATGCA 59.337 40.000 0.00 0.00 31.13 3.96
311 312 5.988561 CACTATCTAGTTTTCCTCTCCATGC 59.011 44.000 0.00 0.00 33.46 4.06
312 313 6.463614 CCCACTATCTAGTTTTCCTCTCCATG 60.464 46.154 0.00 0.00 33.46 3.66
313 314 5.604650 CCCACTATCTAGTTTTCCTCTCCAT 59.395 44.000 0.00 0.00 33.46 3.41
314 315 4.962995 CCCACTATCTAGTTTTCCTCTCCA 59.037 45.833 0.00 0.00 33.46 3.86
315 316 4.963628 ACCCACTATCTAGTTTTCCTCTCC 59.036 45.833 0.00 0.00 33.46 3.71
316 317 5.221087 CGACCCACTATCTAGTTTTCCTCTC 60.221 48.000 0.00 0.00 33.46 3.20
317 318 4.645588 CGACCCACTATCTAGTTTTCCTCT 59.354 45.833 0.00 0.00 33.46 3.69
318 319 4.401837 ACGACCCACTATCTAGTTTTCCTC 59.598 45.833 0.00 0.00 33.46 3.71
319 320 4.351127 ACGACCCACTATCTAGTTTTCCT 58.649 43.478 0.00 0.00 33.46 3.36
320 321 4.732672 ACGACCCACTATCTAGTTTTCC 57.267 45.455 0.00 0.00 33.46 3.13
321 322 4.329256 GCAACGACCCACTATCTAGTTTTC 59.671 45.833 0.00 0.00 33.46 2.29
322 323 4.020485 AGCAACGACCCACTATCTAGTTTT 60.020 41.667 0.00 0.00 33.46 2.43
323 324 3.514309 AGCAACGACCCACTATCTAGTTT 59.486 43.478 0.00 0.00 33.46 2.66
324 325 3.097614 AGCAACGACCCACTATCTAGTT 58.902 45.455 0.00 0.00 33.46 2.24
325 326 2.736347 AGCAACGACCCACTATCTAGT 58.264 47.619 0.00 0.00 36.90 2.57
326 327 5.455056 AATAGCAACGACCCACTATCTAG 57.545 43.478 0.00 0.00 0.00 2.43
327 328 5.864418 AAATAGCAACGACCCACTATCTA 57.136 39.130 0.00 0.00 0.00 1.98
328 329 4.755266 AAATAGCAACGACCCACTATCT 57.245 40.909 0.00 0.00 0.00 1.98
329 330 6.278363 TCTTAAATAGCAACGACCCACTATC 58.722 40.000 0.00 0.00 0.00 2.08
330 331 6.229936 TCTTAAATAGCAACGACCCACTAT 57.770 37.500 0.00 0.00 0.00 2.12
331 332 5.664294 TCTTAAATAGCAACGACCCACTA 57.336 39.130 0.00 0.00 0.00 2.74
332 333 4.546829 TCTTAAATAGCAACGACCCACT 57.453 40.909 0.00 0.00 0.00 4.00
333 334 4.094442 CCTTCTTAAATAGCAACGACCCAC 59.906 45.833 0.00 0.00 0.00 4.61
334 335 4.020039 TCCTTCTTAAATAGCAACGACCCA 60.020 41.667 0.00 0.00 0.00 4.51
335 336 4.331992 GTCCTTCTTAAATAGCAACGACCC 59.668 45.833 0.00 0.00 0.00 4.46
336 337 4.032558 CGTCCTTCTTAAATAGCAACGACC 59.967 45.833 0.00 0.00 0.00 4.79
337 338 4.860907 TCGTCCTTCTTAAATAGCAACGAC 59.139 41.667 0.00 0.00 0.00 4.34
338 339 5.063180 TCGTCCTTCTTAAATAGCAACGA 57.937 39.130 0.00 0.00 0.00 3.85
339 340 5.004535 GTCTCGTCCTTCTTAAATAGCAACG 59.995 44.000 0.00 0.00 0.00 4.10
340 341 6.100668 AGTCTCGTCCTTCTTAAATAGCAAC 58.899 40.000 0.00 0.00 0.00 4.17
341 342 6.282199 AGTCTCGTCCTTCTTAAATAGCAA 57.718 37.500 0.00 0.00 0.00 3.91
342 343 5.916661 AGTCTCGTCCTTCTTAAATAGCA 57.083 39.130 0.00 0.00 0.00 3.49
343 344 6.100668 ACAAGTCTCGTCCTTCTTAAATAGC 58.899 40.000 0.00 0.00 0.00 2.97
344 345 7.486551 CAGACAAGTCTCGTCCTTCTTAAATAG 59.513 40.741 0.00 0.00 37.98 1.73
345 346 7.313646 CAGACAAGTCTCGTCCTTCTTAAATA 58.686 38.462 0.00 0.00 37.98 1.40
346 347 6.159988 CAGACAAGTCTCGTCCTTCTTAAAT 58.840 40.000 0.00 0.00 37.98 1.40
347 348 5.529791 CAGACAAGTCTCGTCCTTCTTAAA 58.470 41.667 0.00 0.00 37.98 1.52
348 349 4.558898 GCAGACAAGTCTCGTCCTTCTTAA 60.559 45.833 0.00 0.00 37.98 1.85
349 350 3.057456 GCAGACAAGTCTCGTCCTTCTTA 60.057 47.826 0.00 0.00 37.98 2.10
350 351 2.288518 GCAGACAAGTCTCGTCCTTCTT 60.289 50.000 0.00 0.00 37.98 2.52
351 352 1.271102 GCAGACAAGTCTCGTCCTTCT 59.729 52.381 0.00 0.00 37.98 2.85
352 353 1.271102 AGCAGACAAGTCTCGTCCTTC 59.729 52.381 0.00 0.00 37.98 3.46
353 354 1.271102 GAGCAGACAAGTCTCGTCCTT 59.729 52.381 0.00 0.00 37.98 3.36
354 355 0.885196 GAGCAGACAAGTCTCGTCCT 59.115 55.000 0.00 0.00 37.98 3.85
355 356 0.109039 GGAGCAGACAAGTCTCGTCC 60.109 60.000 10.21 10.21 37.98 4.79
356 357 0.109039 GGGAGCAGACAAGTCTCGTC 60.109 60.000 0.00 0.27 37.98 4.20
357 358 0.540830 AGGGAGCAGACAAGTCTCGT 60.541 55.000 0.00 0.00 37.98 4.18
358 359 0.172352 GAGGGAGCAGACAAGTCTCG 59.828 60.000 0.00 0.00 37.98 4.04
359 360 0.534873 GGAGGGAGCAGACAAGTCTC 59.465 60.000 0.00 0.00 37.98 3.36
360 361 1.254284 CGGAGGGAGCAGACAAGTCT 61.254 60.000 0.00 0.00 41.37 3.24
361 362 1.216710 CGGAGGGAGCAGACAAGTC 59.783 63.158 0.00 0.00 0.00 3.01
362 363 2.948720 GCGGAGGGAGCAGACAAGT 61.949 63.158 0.00 0.00 34.19 3.16
363 364 2.125350 GCGGAGGGAGCAGACAAG 60.125 66.667 0.00 0.00 34.19 3.16
364 365 4.069232 CGCGGAGGGAGCAGACAA 62.069 66.667 0.00 0.00 46.37 3.18
366 367 4.803426 CACGCGGAGGGAGCAGAC 62.803 72.222 12.47 0.00 46.37 3.51
381 382 3.127533 GAGCACGGATGGGCACAC 61.128 66.667 0.00 0.00 0.00 3.82
382 383 4.408821 GGAGCACGGATGGGCACA 62.409 66.667 0.00 0.00 0.00 4.57
386 387 4.838152 CACGGGAGCACGGATGGG 62.838 72.222 0.00 0.00 38.39 4.00
387 388 2.717044 TACACGGGAGCACGGATGG 61.717 63.158 0.00 0.00 38.39 3.51
388 389 1.518572 GTACACGGGAGCACGGATG 60.519 63.158 0.00 0.00 38.39 3.51
389 390 2.890371 GTACACGGGAGCACGGAT 59.110 61.111 0.00 0.00 38.39 4.18
390 391 3.740397 CGTACACGGGAGCACGGA 61.740 66.667 0.00 0.00 38.39 4.69
391 392 4.047059 ACGTACACGGGAGCACGG 62.047 66.667 13.82 0.00 44.95 4.94
398 399 0.672401 AATCAAGCCACGTACACGGG 60.672 55.000 6.72 1.25 44.95 5.28
399 400 1.136085 CAAATCAAGCCACGTACACGG 60.136 52.381 6.72 0.00 44.95 4.94
400 401 1.795872 TCAAATCAAGCCACGTACACG 59.204 47.619 0.00 0.00 46.33 4.49
401 402 4.158384 CAATCAAATCAAGCCACGTACAC 58.842 43.478 0.00 0.00 0.00 2.90
402 403 3.190327 CCAATCAAATCAAGCCACGTACA 59.810 43.478 0.00 0.00 0.00 2.90
403 404 3.438781 TCCAATCAAATCAAGCCACGTAC 59.561 43.478 0.00 0.00 0.00 3.67
404 405 3.680490 TCCAATCAAATCAAGCCACGTA 58.320 40.909 0.00 0.00 0.00 3.57
405 406 2.513753 TCCAATCAAATCAAGCCACGT 58.486 42.857 0.00 0.00 0.00 4.49
406 407 3.244976 GTTCCAATCAAATCAAGCCACG 58.755 45.455 0.00 0.00 0.00 4.94
407 408 4.255833 TGTTCCAATCAAATCAAGCCAC 57.744 40.909 0.00 0.00 0.00 5.01
408 409 4.952071 TTGTTCCAATCAAATCAAGCCA 57.048 36.364 0.00 0.00 0.00 4.75
409 410 6.806388 ATTTTGTTCCAATCAAATCAAGCC 57.194 33.333 0.00 0.00 35.25 4.35
410 411 8.445493 CCTTATTTTGTTCCAATCAAATCAAGC 58.555 33.333 0.00 0.00 35.25 4.01
411 412 8.445493 GCCTTATTTTGTTCCAATCAAATCAAG 58.555 33.333 0.00 0.00 35.25 3.02
412 413 7.390162 GGCCTTATTTTGTTCCAATCAAATCAA 59.610 33.333 0.00 0.00 35.25 2.57
413 414 6.878389 GGCCTTATTTTGTTCCAATCAAATCA 59.122 34.615 0.00 0.00 35.25 2.57
414 415 6.316140 GGGCCTTATTTTGTTCCAATCAAATC 59.684 38.462 0.84 0.00 35.25 2.17
415 416 6.179756 GGGCCTTATTTTGTTCCAATCAAAT 58.820 36.000 0.84 0.00 35.25 2.32
416 417 5.555966 GGGCCTTATTTTGTTCCAATCAAA 58.444 37.500 0.84 0.00 33.76 2.69
417 418 4.322349 CGGGCCTTATTTTGTTCCAATCAA 60.322 41.667 0.84 0.00 0.00 2.57
418 419 3.194542 CGGGCCTTATTTTGTTCCAATCA 59.805 43.478 0.84 0.00 0.00 2.57
419 420 3.430236 CCGGGCCTTATTTTGTTCCAATC 60.430 47.826 0.84 0.00 0.00 2.67
420 421 2.499693 CCGGGCCTTATTTTGTTCCAAT 59.500 45.455 0.84 0.00 0.00 3.16
421 422 1.896465 CCGGGCCTTATTTTGTTCCAA 59.104 47.619 0.84 0.00 0.00 3.53
422 423 1.551452 CCGGGCCTTATTTTGTTCCA 58.449 50.000 0.84 0.00 0.00 3.53
423 424 0.174845 GCCGGGCCTTATTTTGTTCC 59.825 55.000 8.12 0.00 0.00 3.62
424 425 0.174845 GGCCGGGCCTTATTTTGTTC 59.825 55.000 30.86 0.00 46.69 3.18
425 426 2.282827 GGCCGGGCCTTATTTTGTT 58.717 52.632 30.86 0.00 46.69 2.83
426 427 4.027884 GGCCGGGCCTTATTTTGT 57.972 55.556 30.86 0.00 46.69 2.83
441 442 0.968393 TGATTTTAAGGGCGTGGGGC 60.968 55.000 0.00 0.00 42.51 5.80
442 443 1.102978 CTGATTTTAAGGGCGTGGGG 58.897 55.000 0.00 0.00 0.00 4.96
443 444 1.102978 CCTGATTTTAAGGGCGTGGG 58.897 55.000 0.00 0.00 0.00 4.61
462 463 9.273137 TCTCTTTCTAATATAATCATCTCCCCC 57.727 37.037 0.00 0.00 0.00 5.40
495 496 3.695830 TCATCCTACGGCTGTCTTTTT 57.304 42.857 0.00 0.00 0.00 1.94
496 497 3.008049 ACTTCATCCTACGGCTGTCTTTT 59.992 43.478 0.00 0.00 0.00 2.27
497 498 2.567615 ACTTCATCCTACGGCTGTCTTT 59.432 45.455 0.00 0.00 0.00 2.52
498 499 2.093973 CACTTCATCCTACGGCTGTCTT 60.094 50.000 0.00 0.00 0.00 3.01
499 500 1.478510 CACTTCATCCTACGGCTGTCT 59.521 52.381 0.00 0.00 0.00 3.41
500 501 1.471676 CCACTTCATCCTACGGCTGTC 60.472 57.143 0.00 0.00 0.00 3.51
501 502 0.537188 CCACTTCATCCTACGGCTGT 59.463 55.000 2.42 2.42 0.00 4.40
502 503 0.179073 CCCACTTCATCCTACGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
503 504 0.325296 TCCCACTTCATCCTACGGCT 60.325 55.000 0.00 0.00 0.00 5.52
504 505 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.000 0.00 0.00 0.00 5.68
505 506 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.000 0.00 0.00 0.00 4.02
506 507 0.824109 TGCTCCCACTTCATCCTACG 59.176 55.000 0.00 0.00 0.00 3.51
507 508 1.555075 TGTGCTCCCACTTCATCCTAC 59.445 52.381 0.00 0.00 42.54 3.18
508 509 1.833630 CTGTGCTCCCACTTCATCCTA 59.166 52.381 0.00 0.00 42.54 2.94
509 510 0.617413 CTGTGCTCCCACTTCATCCT 59.383 55.000 0.00 0.00 42.54 3.24
510 511 0.615331 TCTGTGCTCCCACTTCATCC 59.385 55.000 0.00 0.00 42.54 3.51
511 512 2.286872 CATCTGTGCTCCCACTTCATC 58.713 52.381 0.00 0.00 42.54 2.92
512 513 1.064906 CCATCTGTGCTCCCACTTCAT 60.065 52.381 0.00 0.00 42.54 2.57
513 514 0.325933 CCATCTGTGCTCCCACTTCA 59.674 55.000 0.00 0.00 42.54 3.02
514 515 0.615331 TCCATCTGTGCTCCCACTTC 59.385 55.000 0.00 0.00 42.54 3.01
515 516 1.004044 CTTCCATCTGTGCTCCCACTT 59.996 52.381 0.00 0.00 42.54 3.16
516 517 0.617413 CTTCCATCTGTGCTCCCACT 59.383 55.000 0.00 0.00 42.54 4.00
517 518 1.028868 GCTTCCATCTGTGCTCCCAC 61.029 60.000 0.00 0.00 42.40 4.61
518 519 1.300963 GCTTCCATCTGTGCTCCCA 59.699 57.895 0.00 0.00 0.00 4.37
519 520 0.106819 ATGCTTCCATCTGTGCTCCC 60.107 55.000 0.00 0.00 0.00 4.30
520 521 1.022735 CATGCTTCCATCTGTGCTCC 58.977 55.000 0.00 0.00 0.00 4.70
521 522 1.022735 CCATGCTTCCATCTGTGCTC 58.977 55.000 0.00 0.00 0.00 4.26
522 523 0.395311 CCCATGCTTCCATCTGTGCT 60.395 55.000 0.00 0.00 0.00 4.40
523 524 1.389609 CCCCATGCTTCCATCTGTGC 61.390 60.000 0.00 0.00 0.00 4.57
524 525 0.256752 TCCCCATGCTTCCATCTGTG 59.743 55.000 0.00 0.00 0.00 3.66
525 526 0.549950 CTCCCCATGCTTCCATCTGT 59.450 55.000 0.00 0.00 0.00 3.41
526 527 0.178998 CCTCCCCATGCTTCCATCTG 60.179 60.000 0.00 0.00 0.00 2.90
527 528 1.358830 CCCTCCCCATGCTTCCATCT 61.359 60.000 0.00 0.00 0.00 2.90
528 529 1.152368 CCCTCCCCATGCTTCCATC 59.848 63.158 0.00 0.00 0.00 3.51
529 530 1.309013 TCCCTCCCCATGCTTCCAT 60.309 57.895 0.00 0.00 0.00 3.41
530 531 2.002977 CTCCCTCCCCATGCTTCCA 61.003 63.158 0.00 0.00 0.00 3.53
531 532 2.922234 CTCCCTCCCCATGCTTCC 59.078 66.667 0.00 0.00 0.00 3.46
532 533 2.194326 GCTCCCTCCCCATGCTTC 59.806 66.667 0.00 0.00 0.00 3.86
533 534 2.614969 TGCTCCCTCCCCATGCTT 60.615 61.111 0.00 0.00 0.00 3.91
534 535 3.095163 CTGCTCCCTCCCCATGCT 61.095 66.667 0.00 0.00 0.00 3.79
535 536 4.201122 CCTGCTCCCTCCCCATGC 62.201 72.222 0.00 0.00 0.00 4.06
536 537 4.201122 GCCTGCTCCCTCCCCATG 62.201 72.222 0.00 0.00 0.00 3.66
537 538 4.765970 TGCCTGCTCCCTCCCCAT 62.766 66.667 0.00 0.00 0.00 4.00
539 540 4.120755 CTTGCCTGCTCCCTCCCC 62.121 72.222 0.00 0.00 0.00 4.81
540 541 4.811364 GCTTGCCTGCTCCCTCCC 62.811 72.222 0.00 0.00 0.00 4.30
541 542 3.726144 AGCTTGCCTGCTCCCTCC 61.726 66.667 0.00 0.00 39.34 4.30
542 543 2.438075 CAGCTTGCCTGCTCCCTC 60.438 66.667 0.00 0.00 41.98 4.30
543 544 4.044439 CCAGCTTGCCTGCTCCCT 62.044 66.667 0.00 0.00 41.98 4.20
544 545 3.355957 ATCCAGCTTGCCTGCTCCC 62.356 63.158 0.00 0.00 41.98 4.30
545 546 1.823041 GATCCAGCTTGCCTGCTCC 60.823 63.158 0.00 0.00 41.98 4.70
546 547 1.823041 GGATCCAGCTTGCCTGCTC 60.823 63.158 6.95 0.00 41.98 4.26
547 548 1.934459 ATGGATCCAGCTTGCCTGCT 61.934 55.000 21.33 0.00 45.18 4.24
548 549 1.041447 AATGGATCCAGCTTGCCTGC 61.041 55.000 21.33 0.00 40.36 4.85
549 550 1.481871 AAATGGATCCAGCTTGCCTG 58.518 50.000 21.33 0.00 41.41 4.85
550 551 3.053395 TCTTAAATGGATCCAGCTTGCCT 60.053 43.478 21.33 0.00 0.00 4.75
551 552 3.290710 TCTTAAATGGATCCAGCTTGCC 58.709 45.455 21.33 0.00 0.00 4.52
552 553 4.989279 TTCTTAAATGGATCCAGCTTGC 57.011 40.909 21.33 0.00 0.00 4.01
553 554 7.174599 CCTCTATTCTTAAATGGATCCAGCTTG 59.825 40.741 21.33 9.13 32.62 4.01
554 555 7.230027 CCTCTATTCTTAAATGGATCCAGCTT 58.770 38.462 21.33 17.38 32.62 3.74
555 556 6.240118 CCCTCTATTCTTAAATGGATCCAGCT 60.240 42.308 21.33 11.88 32.62 4.24
556 557 5.942826 CCCTCTATTCTTAAATGGATCCAGC 59.057 44.000 21.33 0.00 32.62 4.85
557 558 7.084268 ACCCTCTATTCTTAAATGGATCCAG 57.916 40.000 21.33 6.07 32.62 3.86
558 559 8.757307 ATACCCTCTATTCTTAAATGGATCCA 57.243 34.615 18.88 18.88 32.62 3.41
563 564 9.606631 GCAGATATACCCTCTATTCTTAAATGG 57.393 37.037 0.00 0.00 0.00 3.16
568 569 8.982723 GGAATGCAGATATACCCTCTATTCTTA 58.017 37.037 0.00 0.00 0.00 2.10
569 570 7.459125 TGGAATGCAGATATACCCTCTATTCTT 59.541 37.037 0.00 0.00 0.00 2.52
570 571 6.962311 TGGAATGCAGATATACCCTCTATTCT 59.038 38.462 0.00 0.00 0.00 2.40
571 572 7.187824 TGGAATGCAGATATACCCTCTATTC 57.812 40.000 0.00 0.00 0.00 1.75
572 573 7.574021 TTGGAATGCAGATATACCCTCTATT 57.426 36.000 0.00 0.00 0.00 1.73
573 574 7.574021 TTTGGAATGCAGATATACCCTCTAT 57.426 36.000 0.00 0.00 0.00 1.98
574 575 7.574021 ATTTGGAATGCAGATATACCCTCTA 57.426 36.000 0.00 0.00 0.00 2.43
575 576 5.912149 TTTGGAATGCAGATATACCCTCT 57.088 39.130 0.00 0.00 0.00 3.69
576 577 7.530426 AAATTTGGAATGCAGATATACCCTC 57.470 36.000 0.00 0.00 0.00 4.30
577 578 7.729116 CAAAATTTGGAATGCAGATATACCCT 58.271 34.615 0.00 0.00 0.00 4.34
578 579 7.951530 CAAAATTTGGAATGCAGATATACCC 57.048 36.000 0.00 0.00 0.00 3.69
698 702 5.009911 TGGATGAGGATGCATTTATTTTCCG 59.990 40.000 0.00 0.00 0.00 4.30
848 855 9.817809 CTTAGTCAGCTAGTGGTATTTTATGAA 57.182 33.333 0.00 0.00 0.00 2.57
885 892 7.433425 GCGTTCGGTAAAATACTAGTACAAGAT 59.567 37.037 4.31 0.00 0.00 2.40
886 893 6.747280 GCGTTCGGTAAAATACTAGTACAAGA 59.253 38.462 4.31 0.00 0.00 3.02
887 894 6.527722 TGCGTTCGGTAAAATACTAGTACAAG 59.472 38.462 4.31 0.00 0.00 3.16
889 896 5.948588 TGCGTTCGGTAAAATACTAGTACA 58.051 37.500 4.31 0.00 0.00 2.90
891 898 5.516339 GCTTGCGTTCGGTAAAATACTAGTA 59.484 40.000 4.77 4.77 0.00 1.82
892 899 4.328169 GCTTGCGTTCGGTAAAATACTAGT 59.672 41.667 0.00 0.00 0.00 2.57
893 900 4.260091 GGCTTGCGTTCGGTAAAATACTAG 60.260 45.833 0.00 0.00 0.00 2.57
894 901 3.618150 GGCTTGCGTTCGGTAAAATACTA 59.382 43.478 0.00 0.00 0.00 1.82
896 903 2.160022 TGGCTTGCGTTCGGTAAAATAC 59.840 45.455 0.00 0.00 0.00 1.89
897 904 2.424557 TGGCTTGCGTTCGGTAAAATA 58.575 42.857 0.00 0.00 0.00 1.40
898 905 1.240256 TGGCTTGCGTTCGGTAAAAT 58.760 45.000 0.00 0.00 0.00 1.82
899 906 1.198178 GATGGCTTGCGTTCGGTAAAA 59.802 47.619 0.00 0.00 0.00 1.52
900 907 0.800012 GATGGCTTGCGTTCGGTAAA 59.200 50.000 0.00 0.00 0.00 2.01
942 950 5.176223 GCAGATCACAAGAACAACAAAATGG 59.824 40.000 0.00 0.00 0.00 3.16
971 979 0.038526 TTCCCTCGACTTGTTCTCGC 60.039 55.000 0.00 0.00 0.00 5.03
999 1007 4.643795 ATGGTTCCTCGTGCCATG 57.356 55.556 0.00 0.00 41.05 3.66
1061 1069 2.693250 CTTGCTGTGGACGACGGTGA 62.693 60.000 0.00 0.00 32.87 4.02
1228 1240 7.336679 ACTTGAACACTGCATGCATTAGTTATA 59.663 33.333 22.97 14.38 0.00 0.98
1229 1241 6.151648 ACTTGAACACTGCATGCATTAGTTAT 59.848 34.615 22.97 6.70 0.00 1.89
1501 1515 3.003480 AGATCGCACCTTAAAGACTTGC 58.997 45.455 0.00 0.00 0.00 4.01
1553 1567 0.725686 CAGACTTGAGCCAAGCATCG 59.274 55.000 13.00 0.00 44.43 3.84
1572 1586 8.131100 TCAGTCTTGAAAGAAACATGTTGAATC 58.869 33.333 12.82 6.24 36.68 2.52
1573 1587 7.999679 TCAGTCTTGAAAGAAACATGTTGAAT 58.000 30.769 12.82 0.00 36.68 2.57
1646 1675 4.600062 ACAGATATTGGTCCCCTCAAAAC 58.400 43.478 0.00 0.00 0.00 2.43
1653 1682 1.766496 TCCGAACAGATATTGGTCCCC 59.234 52.381 0.00 0.00 40.61 4.81
1696 1725 5.125097 ACCAACTAGTCGTATACTTCCACTG 59.875 44.000 0.00 0.00 39.80 3.66
1731 1760 6.950545 ACTTAAATTCATCGACGTTTTCACA 58.049 32.000 0.00 0.00 0.00 3.58
1738 1767 8.932791 ACTGAAATTACTTAAATTCATCGACGT 58.067 29.630 0.00 0.00 36.76 4.34
1922 1951 3.694072 TCCCAGAAACACAGTGAGTTTTG 59.306 43.478 17.97 16.15 39.15 2.44
1942 1971 6.877611 ATATTACATCCACAACCGAAATCC 57.122 37.500 0.00 0.00 0.00 3.01
1997 2027 8.731275 TTGTCAGTAGAATGAAAGAAACTTGA 57.269 30.769 0.00 0.00 0.00 3.02
2042 2072 2.582498 GATCGACGGTGGCTTCGG 60.582 66.667 0.00 0.00 35.89 4.30
2046 2076 3.823330 GACGGATCGACGGTGGCT 61.823 66.667 0.00 0.00 38.39 4.75
2083 2113 0.391130 TCGGTGTCATTGCTAGTGCC 60.391 55.000 0.00 0.00 38.71 5.01
2088 2118 3.937814 ACAAATCTCGGTGTCATTGCTA 58.062 40.909 0.00 0.00 0.00 3.49
2181 2219 8.650490 TGGAGTCTTATTGCAGATTGTATCATA 58.350 33.333 0.00 0.00 0.00 2.15
2196 2234 4.087182 TCTCGTGTCCTTGGAGTCTTATT 58.913 43.478 0.00 0.00 0.00 1.40
2202 2240 1.540267 CTCTCTCGTGTCCTTGGAGT 58.460 55.000 0.00 0.00 0.00 3.85
2211 2249 3.805307 CGGAGCGCTCTCTCGTGT 61.805 66.667 34.46 0.00 39.31 4.49
2268 2306 4.162690 AGAGGGACAATCCGGCGC 62.163 66.667 0.00 0.00 37.43 6.53
2312 2355 5.221461 CGGGTAGCCAAATAGACTAGACAAT 60.221 44.000 12.31 0.00 0.00 2.71
2313 2356 4.098960 CGGGTAGCCAAATAGACTAGACAA 59.901 45.833 12.31 0.00 0.00 3.18
2354 2397 5.365619 GGACATGTGTAATTCGGGACTAAT 58.634 41.667 1.15 0.00 0.00 1.73
2355 2398 4.678574 CGGACATGTGTAATTCGGGACTAA 60.679 45.833 1.15 0.00 0.00 2.24
2356 2399 3.181484 CGGACATGTGTAATTCGGGACTA 60.181 47.826 1.15 0.00 0.00 2.59
2364 2407 5.049680 GTGTTTGAGTCGGACATGTGTAATT 60.050 40.000 1.15 0.00 0.00 1.40
2365 2408 4.451096 GTGTTTGAGTCGGACATGTGTAAT 59.549 41.667 1.15 0.00 0.00 1.89
2417 2467 5.995565 TTCACTGTATAGGTTGTGCTACT 57.004 39.130 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.