Multiple sequence alignment - TraesCS2B01G052000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G052000 chr2B 100.000 3243 0 0 1 3243 25341204 25337962 0.000000e+00 5989.0
1 TraesCS2B01G052000 chr2B 98.610 1367 19 0 1443 2809 457194925 457196291 0.000000e+00 2420.0
2 TraesCS2B01G052000 chr2B 95.231 1258 44 14 308 1559 457193857 457195104 0.000000e+00 1977.0
3 TraesCS2B01G052000 chr2B 98.496 266 4 0 1 266 457193604 457193869 1.360000e-128 470.0
4 TraesCS2B01G052000 chr2B 78.824 170 21 12 1456 1619 457194878 457195038 2.060000e-17 100.0
5 TraesCS2B01G052000 chr3B 88.827 2515 198 47 307 2805 656604334 656601887 0.000000e+00 3011.0
6 TraesCS2B01G052000 chr3B 96.587 1377 45 2 1430 2805 465042904 465041529 0.000000e+00 2281.0
7 TraesCS2B01G052000 chr3B 94.174 1253 49 18 312 1559 465043945 465042712 0.000000e+00 1888.0
8 TraesCS2B01G052000 chr3B 96.947 262 8 0 1 262 465044198 465043937 1.070000e-119 440.0
9 TraesCS2B01G052000 chr7A 98.903 1367 15 0 1443 2809 287613388 287614754 0.000000e+00 2442.0
10 TraesCS2B01G052000 chr7A 94.943 1404 34 11 1 1370 660200885 660199485 0.000000e+00 2165.0
11 TraesCS2B01G052000 chr7A 95.866 1258 38 12 306 1558 287612318 287613566 0.000000e+00 2023.0
12 TraesCS2B01G052000 chr7A 96.768 990 31 1 1552 2541 660199341 660198353 0.000000e+00 1650.0
13 TraesCS2B01G052000 chr7A 90.531 697 45 12 307 990 207882807 207883495 0.000000e+00 902.0
14 TraesCS2B01G052000 chr7A 91.170 453 34 5 894 1343 207883433 207883882 7.690000e-171 610.0
15 TraesCS2B01G052000 chr7A 98.507 268 4 0 1 268 287612065 287612332 1.050000e-129 473.0
16 TraesCS2B01G052000 chr7A 94.275 262 15 0 1 262 207882559 207882820 5.040000e-108 401.0
17 TraesCS2B01G052000 chr7A 79.191 173 23 10 1455 1622 287613340 287613504 1.230000e-19 108.0
18 TraesCS2B01G052000 chr7A 76.279 215 31 14 1362 1559 287613433 287613644 2.660000e-16 97.1
19 TraesCS2B01G052000 chr1B 98.444 1350 21 0 1456 2805 573062359 573063708 0.000000e+00 2377.0
20 TraesCS2B01G052000 chr1B 98.444 1350 21 0 1456 2805 573066995 573068344 0.000000e+00 2377.0
21 TraesCS2B01G052000 chr1B 76.279 215 31 14 1362 1559 573062391 573062602 2.660000e-16 97.1
22 TraesCS2B01G052000 chr1B 76.279 215 31 14 1362 1559 573067027 573067238 2.660000e-16 97.1
23 TraesCS2B01G052000 chr4B 96.809 1379 41 3 1430 2805 649665239 649663861 0.000000e+00 2300.0
24 TraesCS2B01G052000 chr4B 90.132 456 39 5 894 1346 498932899 498933351 3.600000e-164 588.0
25 TraesCS2B01G052000 chr4B 76.879 173 31 8 1328 1496 649665214 649665047 4.460000e-14 89.8
26 TraesCS2B01G052000 chr2A 95.599 1386 28 9 1 1370 748226904 748228272 0.000000e+00 2191.0
27 TraesCS2B01G052000 chr2A 97.071 990 28 1 1552 2541 748228416 748229404 0.000000e+00 1666.0
28 TraesCS2B01G052000 chr2A 98.891 631 6 1 310 940 728781628 728780999 0.000000e+00 1125.0
29 TraesCS2B01G052000 chr2A 98.485 264 4 0 1 264 728781881 728781618 1.760000e-127 466.0
30 TraesCS2B01G052000 chr5A 87.792 1499 147 22 1330 2805 634170727 634169242 0.000000e+00 1722.0
31 TraesCS2B01G052000 chr5A 87.448 1434 116 44 307 1708 634171832 634170431 0.000000e+00 1592.0
32 TraesCS2B01G052000 chr5A 83.910 665 83 19 894 1550 452243122 452243770 5.950000e-172 614.0
33 TraesCS2B01G052000 chr5A 93.182 264 16 1 1 264 452242247 452242508 1.410000e-103 387.0
34 TraesCS2B01G052000 chr5A 92.366 262 20 0 1 262 634172080 634171819 1.100000e-99 374.0
35 TraesCS2B01G052000 chr5B 92.821 1184 73 10 1624 2803 486696905 486698080 0.000000e+00 1705.0
36 TraesCS2B01G052000 chr3A 93.934 610 36 1 307 915 598919018 598919627 0.000000e+00 920.0
37 TraesCS2B01G052000 chr4A 96.181 288 9 2 2798 3084 703889493 703889207 1.360000e-128 470.0
38 TraesCS2B01G052000 chr2D 96.581 234 8 0 2851 3084 435975851 435975618 3.920000e-104 388.0
39 TraesCS2B01G052000 chr7B 93.865 163 7 1 3084 3243 102219813 102219651 3.230000e-60 243.0
40 TraesCS2B01G052000 chr7D 92.405 158 9 2 3084 3238 562252698 562252541 4.210000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G052000 chr2B 25337962 25341204 3242 True 5989.000000 5989 100.000000 1 3243 1 chr2B.!!$R1 3242
1 TraesCS2B01G052000 chr2B 457193604 457196291 2687 False 1241.750000 2420 92.790250 1 2809 4 chr2B.!!$F1 2808
2 TraesCS2B01G052000 chr3B 656601887 656604334 2447 True 3011.000000 3011 88.827000 307 2805 1 chr3B.!!$R1 2498
3 TraesCS2B01G052000 chr3B 465041529 465044198 2669 True 1536.333333 2281 95.902667 1 2805 3 chr3B.!!$R2 2804
4 TraesCS2B01G052000 chr7A 660198353 660200885 2532 True 1907.500000 2165 95.855500 1 2541 2 chr7A.!!$R1 2540
5 TraesCS2B01G052000 chr7A 287612065 287614754 2689 False 1028.620000 2442 89.749200 1 2809 5 chr7A.!!$F2 2808
6 TraesCS2B01G052000 chr7A 207882559 207883882 1323 False 637.666667 902 91.992000 1 1343 3 chr7A.!!$F1 1342
7 TraesCS2B01G052000 chr1B 573062359 573063708 1349 False 1237.050000 2377 87.361500 1362 2805 2 chr1B.!!$F1 1443
8 TraesCS2B01G052000 chr1B 573066995 573068344 1349 False 1237.050000 2377 87.361500 1362 2805 2 chr1B.!!$F2 1443
9 TraesCS2B01G052000 chr4B 649663861 649665239 1378 True 1194.900000 2300 86.844000 1328 2805 2 chr4B.!!$R1 1477
10 TraesCS2B01G052000 chr2A 748226904 748229404 2500 False 1928.500000 2191 96.335000 1 2541 2 chr2A.!!$F1 2540
11 TraesCS2B01G052000 chr2A 728780999 728781881 882 True 795.500000 1125 98.688000 1 940 2 chr2A.!!$R1 939
12 TraesCS2B01G052000 chr5A 634169242 634172080 2838 True 1229.333333 1722 89.202000 1 2805 3 chr5A.!!$R1 2804
13 TraesCS2B01G052000 chr5A 452242247 452243770 1523 False 500.500000 614 88.546000 1 1550 2 chr5A.!!$F1 1549
14 TraesCS2B01G052000 chr5B 486696905 486698080 1175 False 1705.000000 1705 92.821000 1624 2803 1 chr5B.!!$F1 1179
15 TraesCS2B01G052000 chr3A 598919018 598919627 609 False 920.000000 920 93.934000 307 915 1 chr3A.!!$F1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1370 1515 2.391616 TGCTCATGAGTACTTGCTGG 57.608 50.0 23.38 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3128 3662 0.034863 GGACGGCCAGGGACATTAAA 60.035 55.0 0.0 0.0 0.0 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1370 1515 2.391616 TGCTCATGAGTACTTGCTGG 57.608 50.000 23.38 0.00 0.00 4.85
1383 1528 6.592870 AGTACTTGCTGGTACTTCTTTCTTT 58.407 36.000 13.71 0.00 46.88 2.52
1384 1529 7.732996 AGTACTTGCTGGTACTTCTTTCTTTA 58.267 34.615 13.71 0.00 46.88 1.85
1385 1530 6.862711 ACTTGCTGGTACTTCTTTCTTTAC 57.137 37.500 0.00 0.00 0.00 2.01
1386 1531 6.354130 ACTTGCTGGTACTTCTTTCTTTACA 58.646 36.000 0.00 0.00 0.00 2.41
1387 1532 6.260271 ACTTGCTGGTACTTCTTTCTTTACAC 59.740 38.462 0.00 0.00 0.00 2.90
1388 1533 5.925509 TGCTGGTACTTCTTTCTTTACACT 58.074 37.500 0.00 0.00 0.00 3.55
1389 1534 5.989777 TGCTGGTACTTCTTTCTTTACACTC 59.010 40.000 0.00 0.00 0.00 3.51
1390 1535 5.989777 GCTGGTACTTCTTTCTTTACACTCA 59.010 40.000 0.00 0.00 0.00 3.41
1391 1536 6.482308 GCTGGTACTTCTTTCTTTACACTCAA 59.518 38.462 0.00 0.00 0.00 3.02
1399 1544 9.387123 CTTCTTTCTTTACACTCAAATACTTGC 57.613 33.333 0.00 0.00 32.14 4.01
1402 1547 8.445275 TTTCTTTACACTCAAATACTTGCTGA 57.555 30.769 0.00 0.00 32.14 4.26
1403 1548 8.445275 TTCTTTACACTCAAATACTTGCTGAA 57.555 30.769 0.00 0.00 32.14 3.02
1404 1549 8.445275 TCTTTACACTCAAATACTTGCTGAAA 57.555 30.769 0.00 0.00 32.14 2.69
1405 1550 9.066892 TCTTTACACTCAAATACTTGCTGAAAT 57.933 29.630 0.00 0.00 32.14 2.17
1406 1551 9.683069 CTTTACACTCAAATACTTGCTGAAATT 57.317 29.630 0.00 0.00 32.14 1.82
1420 1565 9.372369 ACTTGCTGAAATTAGTATCTACAAGTC 57.628 33.333 0.00 0.00 37.61 3.01
1422 1567 7.847096 TGCTGAAATTAGTATCTACAAGTCCA 58.153 34.615 0.00 0.00 0.00 4.02
1423 1568 7.981789 TGCTGAAATTAGTATCTACAAGTCCAG 59.018 37.037 0.00 0.00 0.00 3.86
1424 1569 8.198109 GCTGAAATTAGTATCTACAAGTCCAGA 58.802 37.037 0.00 0.00 0.00 3.86
1524 1702 6.170506 TCTTCCGTAATGCTCAAATACTTGT 58.829 36.000 0.00 0.00 33.94 3.16
1971 2499 5.638530 AAAAAGGCCAAACCAAATCCTTA 57.361 34.783 5.01 0.00 43.14 2.69
2254 2782 4.263068 CCTGAAGTGTAAGGATGGTGAGTT 60.263 45.833 0.00 0.00 35.40 3.01
2662 3194 3.521126 ACCAAACACTCTGATGGCTATCT 59.479 43.478 11.68 0.00 33.41 1.98
2805 3339 3.257375 GTCCCTTAAACCAAACACATCCC 59.743 47.826 0.00 0.00 0.00 3.85
2809 3343 4.157840 CCTTAAACCAAACACATCCCTAGC 59.842 45.833 0.00 0.00 0.00 3.42
2810 3344 2.215942 AACCAAACACATCCCTAGCC 57.784 50.000 0.00 0.00 0.00 3.93
2811 3345 1.372501 ACCAAACACATCCCTAGCCT 58.627 50.000 0.00 0.00 0.00 4.58
2812 3346 1.282157 ACCAAACACATCCCTAGCCTC 59.718 52.381 0.00 0.00 0.00 4.70
2813 3347 1.561542 CCAAACACATCCCTAGCCTCT 59.438 52.381 0.00 0.00 0.00 3.69
2814 3348 2.636830 CAAACACATCCCTAGCCTCTG 58.363 52.381 0.00 0.00 0.00 3.35
2815 3349 1.958288 AACACATCCCTAGCCTCTGT 58.042 50.000 0.00 0.00 0.00 3.41
2816 3350 2.848678 ACACATCCCTAGCCTCTGTA 57.151 50.000 0.00 0.00 0.00 2.74
2817 3351 2.672098 ACACATCCCTAGCCTCTGTAG 58.328 52.381 0.00 0.00 0.00 2.74
2818 3352 1.342819 CACATCCCTAGCCTCTGTAGC 59.657 57.143 0.00 0.00 0.00 3.58
2819 3353 1.062886 ACATCCCTAGCCTCTGTAGCA 60.063 52.381 0.00 0.00 0.00 3.49
2820 3354 2.042464 CATCCCTAGCCTCTGTAGCAA 58.958 52.381 0.00 0.00 0.00 3.91
2821 3355 2.247699 TCCCTAGCCTCTGTAGCAAA 57.752 50.000 0.00 0.00 0.00 3.68
2822 3356 2.111384 TCCCTAGCCTCTGTAGCAAAG 58.889 52.381 0.00 0.00 0.00 2.77
2823 3357 1.834263 CCCTAGCCTCTGTAGCAAAGT 59.166 52.381 0.00 0.00 0.00 2.66
2824 3358 3.031736 CCCTAGCCTCTGTAGCAAAGTA 58.968 50.000 0.00 0.00 0.00 2.24
2825 3359 3.451178 CCCTAGCCTCTGTAGCAAAGTAA 59.549 47.826 0.00 0.00 0.00 2.24
2826 3360 4.101741 CCCTAGCCTCTGTAGCAAAGTAAT 59.898 45.833 0.00 0.00 0.00 1.89
2827 3361 5.293560 CCTAGCCTCTGTAGCAAAGTAATC 58.706 45.833 0.00 0.00 0.00 1.75
2828 3362 3.786635 AGCCTCTGTAGCAAAGTAATCG 58.213 45.455 0.00 0.00 0.00 3.34
2829 3363 3.447586 AGCCTCTGTAGCAAAGTAATCGA 59.552 43.478 0.00 0.00 0.00 3.59
2830 3364 4.100189 AGCCTCTGTAGCAAAGTAATCGAT 59.900 41.667 0.00 0.00 0.00 3.59
2831 3365 4.811557 GCCTCTGTAGCAAAGTAATCGATT 59.188 41.667 16.15 16.15 0.00 3.34
2832 3366 5.277058 GCCTCTGTAGCAAAGTAATCGATTG 60.277 44.000 20.87 6.12 0.00 2.67
2833 3367 6.042777 CCTCTGTAGCAAAGTAATCGATTGA 58.957 40.000 20.87 3.81 0.00 2.57
2834 3368 6.703607 CCTCTGTAGCAAAGTAATCGATTGAT 59.296 38.462 20.87 6.30 35.98 2.57
2835 3369 7.225538 CCTCTGTAGCAAAGTAATCGATTGATT 59.774 37.037 20.87 12.84 46.41 2.57
2836 3370 8.131455 TCTGTAGCAAAGTAATCGATTGATTC 57.869 34.615 20.87 8.32 43.70 2.52
2869 3403 7.223058 CGATAGTCATTTGTCCACTTTAGTC 57.777 40.000 0.00 0.00 0.00 2.59
2870 3404 6.255887 CGATAGTCATTTGTCCACTTTAGTCC 59.744 42.308 0.00 0.00 0.00 3.85
2871 3405 5.568620 AGTCATTTGTCCACTTTAGTCCT 57.431 39.130 0.00 0.00 0.00 3.85
2872 3406 5.941788 AGTCATTTGTCCACTTTAGTCCTT 58.058 37.500 0.00 0.00 0.00 3.36
2873 3407 6.365520 AGTCATTTGTCCACTTTAGTCCTTT 58.634 36.000 0.00 0.00 0.00 3.11
2874 3408 6.486993 AGTCATTTGTCCACTTTAGTCCTTTC 59.513 38.462 0.00 0.00 0.00 2.62
2875 3409 6.486993 GTCATTTGTCCACTTTAGTCCTTTCT 59.513 38.462 0.00 0.00 0.00 2.52
2876 3410 7.013369 GTCATTTGTCCACTTTAGTCCTTTCTT 59.987 37.037 0.00 0.00 0.00 2.52
2877 3411 8.215050 TCATTTGTCCACTTTAGTCCTTTCTTA 58.785 33.333 0.00 0.00 0.00 2.10
2878 3412 7.797038 TTTGTCCACTTTAGTCCTTTCTTAC 57.203 36.000 0.00 0.00 0.00 2.34
2879 3413 6.742559 TGTCCACTTTAGTCCTTTCTTACT 57.257 37.500 0.00 0.00 0.00 2.24
2880 3414 6.756221 TGTCCACTTTAGTCCTTTCTTACTC 58.244 40.000 0.00 0.00 0.00 2.59
2881 3415 6.553852 TGTCCACTTTAGTCCTTTCTTACTCT 59.446 38.462 0.00 0.00 0.00 3.24
2882 3416 6.869388 GTCCACTTTAGTCCTTTCTTACTCTG 59.131 42.308 0.00 0.00 0.00 3.35
2883 3417 6.553852 TCCACTTTAGTCCTTTCTTACTCTGT 59.446 38.462 0.00 0.00 0.00 3.41
2884 3418 7.070821 TCCACTTTAGTCCTTTCTTACTCTGTT 59.929 37.037 0.00 0.00 0.00 3.16
2885 3419 8.365647 CCACTTTAGTCCTTTCTTACTCTGTTA 58.634 37.037 0.00 0.00 0.00 2.41
2886 3420 9.930693 CACTTTAGTCCTTTCTTACTCTGTTAT 57.069 33.333 0.00 0.00 0.00 1.89
2891 3425 8.880991 AGTCCTTTCTTACTCTGTTATCTACA 57.119 34.615 0.00 0.00 34.95 2.74
2904 3438 6.109156 TGTTATCTACAGAAAAGTCCAGCA 57.891 37.500 0.00 0.00 31.68 4.41
2905 3439 6.166279 TGTTATCTACAGAAAAGTCCAGCAG 58.834 40.000 0.00 0.00 31.68 4.24
2906 3440 4.899352 ATCTACAGAAAAGTCCAGCAGT 57.101 40.909 0.00 0.00 0.00 4.40
2907 3441 4.689612 TCTACAGAAAAGTCCAGCAGTT 57.310 40.909 0.00 0.00 0.00 3.16
2908 3442 5.036117 TCTACAGAAAAGTCCAGCAGTTT 57.964 39.130 0.00 0.00 0.00 2.66
2909 3443 5.057149 TCTACAGAAAAGTCCAGCAGTTTC 58.943 41.667 0.00 0.00 0.00 2.78
2910 3444 2.952310 ACAGAAAAGTCCAGCAGTTTCC 59.048 45.455 0.00 0.00 31.67 3.13
2911 3445 3.217626 CAGAAAAGTCCAGCAGTTTCCT 58.782 45.455 0.00 0.00 31.67 3.36
2912 3446 3.004106 CAGAAAAGTCCAGCAGTTTCCTG 59.996 47.826 0.00 0.00 41.91 3.86
2913 3447 2.736670 AAAGTCCAGCAGTTTCCTGT 57.263 45.000 0.00 0.00 41.02 4.00
2914 3448 2.262423 AAGTCCAGCAGTTTCCTGTC 57.738 50.000 0.00 0.00 41.02 3.51
2915 3449 0.398318 AGTCCAGCAGTTTCCTGTCC 59.602 55.000 0.00 0.00 41.02 4.02
2916 3450 0.108585 GTCCAGCAGTTTCCTGTCCA 59.891 55.000 0.00 0.00 41.02 4.02
2917 3451 0.397941 TCCAGCAGTTTCCTGTCCAG 59.602 55.000 0.00 0.00 41.02 3.86
2918 3452 1.239968 CCAGCAGTTTCCTGTCCAGC 61.240 60.000 0.00 0.00 41.02 4.85
2919 3453 1.073897 AGCAGTTTCCTGTCCAGCC 59.926 57.895 0.00 0.00 41.02 4.85
2920 3454 1.973812 GCAGTTTCCTGTCCAGCCC 60.974 63.158 0.00 0.00 41.02 5.19
2921 3455 1.303643 CAGTTTCCTGTCCAGCCCC 60.304 63.158 0.00 0.00 33.80 5.80
2922 3456 2.035783 GTTTCCTGTCCAGCCCCC 59.964 66.667 0.00 0.00 0.00 5.40
2923 3457 3.646715 TTTCCTGTCCAGCCCCCG 61.647 66.667 0.00 0.00 0.00 5.73
2924 3458 4.974438 TTCCTGTCCAGCCCCCGT 62.974 66.667 0.00 0.00 0.00 5.28
2925 3459 4.974438 TCCTGTCCAGCCCCCGTT 62.974 66.667 0.00 0.00 0.00 4.44
2926 3460 4.410400 CCTGTCCAGCCCCCGTTC 62.410 72.222 0.00 0.00 0.00 3.95
2927 3461 3.322466 CTGTCCAGCCCCCGTTCT 61.322 66.667 0.00 0.00 0.00 3.01
2928 3462 2.852075 TGTCCAGCCCCCGTTCTT 60.852 61.111 0.00 0.00 0.00 2.52
2929 3463 2.046217 GTCCAGCCCCCGTTCTTC 60.046 66.667 0.00 0.00 0.00 2.87
2930 3464 3.327404 TCCAGCCCCCGTTCTTCC 61.327 66.667 0.00 0.00 0.00 3.46
2931 3465 3.330720 CCAGCCCCCGTTCTTCCT 61.331 66.667 0.00 0.00 0.00 3.36
2932 3466 2.045926 CAGCCCCCGTTCTTCCTG 60.046 66.667 0.00 0.00 0.00 3.86
2933 3467 4.035102 AGCCCCCGTTCTTCCTGC 62.035 66.667 0.00 0.00 0.00 4.85
2934 3468 4.344865 GCCCCCGTTCTTCCTGCA 62.345 66.667 0.00 0.00 0.00 4.41
2935 3469 2.677228 CCCCCGTTCTTCCTGCAT 59.323 61.111 0.00 0.00 0.00 3.96
2936 3470 1.000896 CCCCCGTTCTTCCTGCATT 60.001 57.895 0.00 0.00 0.00 3.56
2937 3471 0.611896 CCCCCGTTCTTCCTGCATTT 60.612 55.000 0.00 0.00 0.00 2.32
2938 3472 1.256812 CCCCGTTCTTCCTGCATTTT 58.743 50.000 0.00 0.00 0.00 1.82
2939 3473 1.067635 CCCCGTTCTTCCTGCATTTTG 60.068 52.381 0.00 0.00 0.00 2.44
2940 3474 1.067635 CCCGTTCTTCCTGCATTTTGG 60.068 52.381 0.00 0.00 0.00 3.28
2941 3475 1.885887 CCGTTCTTCCTGCATTTTGGA 59.114 47.619 0.00 0.00 0.00 3.53
2942 3476 2.295909 CCGTTCTTCCTGCATTTTGGAA 59.704 45.455 5.17 5.17 39.73 3.53
2943 3477 3.243704 CCGTTCTTCCTGCATTTTGGAAA 60.244 43.478 6.61 0.00 41.22 3.13
2944 3478 3.735746 CGTTCTTCCTGCATTTTGGAAAC 59.264 43.478 6.61 2.82 41.22 2.78
2945 3479 3.641437 TCTTCCTGCATTTTGGAAACG 57.359 42.857 6.61 0.00 41.22 3.60
2946 3480 3.218453 TCTTCCTGCATTTTGGAAACGA 58.782 40.909 6.61 0.00 41.22 3.85
2947 3481 3.253188 TCTTCCTGCATTTTGGAAACGAG 59.747 43.478 6.61 0.00 41.22 4.18
2948 3482 1.269448 TCCTGCATTTTGGAAACGAGC 59.731 47.619 0.00 0.00 0.00 5.03
2949 3483 1.669795 CCTGCATTTTGGAAACGAGCC 60.670 52.381 0.00 0.00 0.00 4.70
2950 3484 1.000385 CTGCATTTTGGAAACGAGCCA 60.000 47.619 0.00 0.00 0.00 4.75
2951 3485 1.617850 TGCATTTTGGAAACGAGCCAT 59.382 42.857 0.00 0.00 34.90 4.40
2952 3486 2.262211 GCATTTTGGAAACGAGCCATC 58.738 47.619 0.00 0.00 34.90 3.51
2953 3487 2.352617 GCATTTTGGAAACGAGCCATCA 60.353 45.455 0.00 0.00 34.90 3.07
2954 3488 3.504863 CATTTTGGAAACGAGCCATCAG 58.495 45.455 0.00 0.00 34.90 2.90
2955 3489 1.533625 TTTGGAAACGAGCCATCAGG 58.466 50.000 0.00 0.00 34.90 3.86
2965 3499 4.147701 CCATCAGGCCATTCGGAC 57.852 61.111 5.01 0.00 43.02 4.79
2973 3507 2.109425 GGCCATTCGGACTTTGTAGT 57.891 50.000 0.00 0.00 37.33 2.73
2974 3508 2.433436 GGCCATTCGGACTTTGTAGTT 58.567 47.619 0.00 0.00 37.33 2.24
2975 3509 2.418976 GGCCATTCGGACTTTGTAGTTC 59.581 50.000 0.00 0.00 37.33 3.01
2976 3510 3.071479 GCCATTCGGACTTTGTAGTTCA 58.929 45.455 0.00 0.00 33.84 3.18
2977 3511 3.125316 GCCATTCGGACTTTGTAGTTCAG 59.875 47.826 0.00 0.00 33.84 3.02
2978 3512 3.125316 CCATTCGGACTTTGTAGTTCAGC 59.875 47.826 0.00 0.00 33.84 4.26
2979 3513 2.450609 TCGGACTTTGTAGTTCAGCC 57.549 50.000 0.00 0.00 33.84 4.85
2980 3514 1.001633 TCGGACTTTGTAGTTCAGCCC 59.998 52.381 0.00 0.00 33.84 5.19
2981 3515 1.002087 CGGACTTTGTAGTTCAGCCCT 59.998 52.381 0.00 0.00 33.84 5.19
2982 3516 2.701107 GGACTTTGTAGTTCAGCCCTC 58.299 52.381 0.00 0.00 33.84 4.30
2983 3517 2.615747 GGACTTTGTAGTTCAGCCCTCC 60.616 54.545 0.00 0.00 33.84 4.30
2984 3518 1.002087 ACTTTGTAGTTCAGCCCTCCG 59.998 52.381 0.00 0.00 0.00 4.63
2985 3519 0.323629 TTTGTAGTTCAGCCCTCCGG 59.676 55.000 0.00 0.00 0.00 5.14
3000 3534 4.773013 CCCTCCGGCTTACTATTTTAACA 58.227 43.478 0.00 0.00 0.00 2.41
3001 3535 5.374071 CCCTCCGGCTTACTATTTTAACAT 58.626 41.667 0.00 0.00 0.00 2.71
3002 3536 5.826208 CCCTCCGGCTTACTATTTTAACATT 59.174 40.000 0.00 0.00 0.00 2.71
3003 3537 6.320418 CCCTCCGGCTTACTATTTTAACATTT 59.680 38.462 0.00 0.00 0.00 2.32
3004 3538 7.147966 CCCTCCGGCTTACTATTTTAACATTTT 60.148 37.037 0.00 0.00 0.00 1.82
3005 3539 8.895737 CCTCCGGCTTACTATTTTAACATTTTA 58.104 33.333 0.00 0.00 0.00 1.52
3043 3577 9.965824 AATACTATTTTTATTGAAAGCCATCGG 57.034 29.630 0.00 0.00 0.00 4.18
3055 3589 2.317530 GCCATCGGCTTTAGAGAAGT 57.682 50.000 0.00 0.00 46.69 3.01
3056 3590 3.454371 GCCATCGGCTTTAGAGAAGTA 57.546 47.619 0.00 0.00 46.69 2.24
3057 3591 3.996480 GCCATCGGCTTTAGAGAAGTAT 58.004 45.455 0.00 0.00 46.69 2.12
3058 3592 5.135508 GCCATCGGCTTTAGAGAAGTATA 57.864 43.478 0.00 0.00 46.69 1.47
3059 3593 5.725362 GCCATCGGCTTTAGAGAAGTATAT 58.275 41.667 0.00 0.00 46.69 0.86
3060 3594 5.578727 GCCATCGGCTTTAGAGAAGTATATG 59.421 44.000 0.00 0.00 46.69 1.78
3061 3595 6.692486 CCATCGGCTTTAGAGAAGTATATGT 58.308 40.000 0.00 0.00 0.00 2.29
3062 3596 6.587990 CCATCGGCTTTAGAGAAGTATATGTG 59.412 42.308 0.00 0.00 0.00 3.21
3063 3597 6.085555 TCGGCTTTAGAGAAGTATATGTGG 57.914 41.667 0.00 0.00 0.00 4.17
3064 3598 5.831525 TCGGCTTTAGAGAAGTATATGTGGA 59.168 40.000 0.00 0.00 0.00 4.02
3065 3599 6.322969 TCGGCTTTAGAGAAGTATATGTGGAA 59.677 38.462 0.00 0.00 0.00 3.53
3066 3600 6.642950 CGGCTTTAGAGAAGTATATGTGGAAG 59.357 42.308 0.00 0.00 0.00 3.46
3067 3601 7.470147 CGGCTTTAGAGAAGTATATGTGGAAGA 60.470 40.741 0.00 0.00 0.00 2.87
3068 3602 8.371699 GGCTTTAGAGAAGTATATGTGGAAGAT 58.628 37.037 0.00 0.00 0.00 2.40
3069 3603 9.418045 GCTTTAGAGAAGTATATGTGGAAGATC 57.582 37.037 0.00 0.00 0.00 2.75
3070 3604 9.921637 CTTTAGAGAAGTATATGTGGAAGATCC 57.078 37.037 0.00 0.00 36.96 3.36
3071 3605 9.661954 TTTAGAGAAGTATATGTGGAAGATCCT 57.338 33.333 0.00 0.00 37.46 3.24
3072 3606 7.775053 AGAGAAGTATATGTGGAAGATCCTC 57.225 40.000 0.00 0.00 37.46 3.71
3073 3607 7.301420 AGAGAAGTATATGTGGAAGATCCTCA 58.699 38.462 3.86 3.86 43.26 3.86
3074 3608 7.451255 AGAGAAGTATATGTGGAAGATCCTCAG 59.549 40.741 7.18 0.00 42.50 3.35
3075 3609 7.072562 AGAAGTATATGTGGAAGATCCTCAGT 58.927 38.462 7.18 2.21 42.50 3.41
3076 3610 7.566879 AGAAGTATATGTGGAAGATCCTCAGTT 59.433 37.037 7.18 0.94 42.50 3.16
3077 3611 7.296628 AGTATATGTGGAAGATCCTCAGTTC 57.703 40.000 7.18 0.00 42.50 3.01
3078 3612 6.841229 AGTATATGTGGAAGATCCTCAGTTCA 59.159 38.462 7.18 0.00 42.50 3.18
3079 3613 6.760440 ATATGTGGAAGATCCTCAGTTCAT 57.240 37.500 7.18 0.00 42.50 2.57
3080 3614 4.478206 TGTGGAAGATCCTCAGTTCATC 57.522 45.455 0.00 0.00 35.34 2.92
3081 3615 3.198635 TGTGGAAGATCCTCAGTTCATCC 59.801 47.826 0.00 0.00 35.34 3.51
3082 3616 3.454082 GTGGAAGATCCTCAGTTCATCCT 59.546 47.826 0.00 0.00 37.46 3.24
3083 3617 4.651503 GTGGAAGATCCTCAGTTCATCCTA 59.348 45.833 0.00 0.00 37.46 2.94
3084 3618 5.306678 GTGGAAGATCCTCAGTTCATCCTAT 59.693 44.000 0.00 0.00 37.46 2.57
3085 3619 5.907662 TGGAAGATCCTCAGTTCATCCTATT 59.092 40.000 0.00 0.00 37.46 1.73
3086 3620 7.015682 GTGGAAGATCCTCAGTTCATCCTATTA 59.984 40.741 0.00 0.00 37.46 0.98
3087 3621 7.568738 TGGAAGATCCTCAGTTCATCCTATTAA 59.431 37.037 0.00 0.00 37.46 1.40
3088 3622 8.093927 GGAAGATCCTCAGTTCATCCTATTAAG 58.906 40.741 0.00 0.00 32.53 1.85
3089 3623 8.789767 AAGATCCTCAGTTCATCCTATTAAGA 57.210 34.615 0.00 0.00 0.00 2.10
3090 3624 8.789767 AGATCCTCAGTTCATCCTATTAAGAA 57.210 34.615 0.00 0.00 0.00 2.52
3091 3625 9.218525 AGATCCTCAGTTCATCCTATTAAGAAA 57.781 33.333 0.00 0.00 0.00 2.52
3092 3626 9.267084 GATCCTCAGTTCATCCTATTAAGAAAC 57.733 37.037 0.00 0.00 0.00 2.78
3093 3627 8.146053 TCCTCAGTTCATCCTATTAAGAAACA 57.854 34.615 0.00 0.00 0.00 2.83
3094 3628 8.602424 TCCTCAGTTCATCCTATTAAGAAACAA 58.398 33.333 0.00 0.00 0.00 2.83
3095 3629 9.401058 CCTCAGTTCATCCTATTAAGAAACAAT 57.599 33.333 0.00 0.00 0.00 2.71
3120 3654 3.208335 GGTGACCTACGAGCCCTC 58.792 66.667 0.00 0.00 0.00 4.30
3121 3655 1.681327 GGTGACCTACGAGCCCTCA 60.681 63.158 0.00 0.00 0.00 3.86
3122 3656 1.511768 GTGACCTACGAGCCCTCAC 59.488 63.158 0.00 0.00 0.00 3.51
3123 3657 1.076014 TGACCTACGAGCCCTCACA 59.924 57.895 0.00 0.00 0.00 3.58
3124 3658 0.541063 TGACCTACGAGCCCTCACAA 60.541 55.000 0.00 0.00 0.00 3.33
3125 3659 0.108756 GACCTACGAGCCCTCACAAC 60.109 60.000 0.00 0.00 0.00 3.32
3126 3660 0.830444 ACCTACGAGCCCTCACAACA 60.830 55.000 0.00 0.00 0.00 3.33
3127 3661 0.389948 CCTACGAGCCCTCACAACAC 60.390 60.000 0.00 0.00 0.00 3.32
3128 3662 0.603569 CTACGAGCCCTCACAACACT 59.396 55.000 0.00 0.00 0.00 3.55
3129 3663 1.000955 CTACGAGCCCTCACAACACTT 59.999 52.381 0.00 0.00 0.00 3.16
3130 3664 0.180406 ACGAGCCCTCACAACACTTT 59.820 50.000 0.00 0.00 0.00 2.66
3131 3665 1.414919 ACGAGCCCTCACAACACTTTA 59.585 47.619 0.00 0.00 0.00 1.85
3132 3666 2.158871 ACGAGCCCTCACAACACTTTAA 60.159 45.455 0.00 0.00 0.00 1.52
3133 3667 3.074412 CGAGCCCTCACAACACTTTAAT 58.926 45.455 0.00 0.00 0.00 1.40
3134 3668 3.120199 CGAGCCCTCACAACACTTTAATG 60.120 47.826 0.00 0.00 0.00 1.90
3135 3669 3.821033 GAGCCCTCACAACACTTTAATGT 59.179 43.478 0.00 0.00 0.00 2.71
3136 3670 3.821033 AGCCCTCACAACACTTTAATGTC 59.179 43.478 0.00 0.00 30.55 3.06
3137 3671 3.057526 GCCCTCACAACACTTTAATGTCC 60.058 47.826 0.00 0.00 30.55 4.02
3138 3672 3.506067 CCCTCACAACACTTTAATGTCCC 59.494 47.826 0.00 0.00 30.55 4.46
3139 3673 4.398319 CCTCACAACACTTTAATGTCCCT 58.602 43.478 0.00 0.00 30.55 4.20
3140 3674 4.216257 CCTCACAACACTTTAATGTCCCTG 59.784 45.833 0.00 0.00 30.55 4.45
3141 3675 4.141287 TCACAACACTTTAATGTCCCTGG 58.859 43.478 0.00 0.00 30.55 4.45
3142 3676 2.890945 ACAACACTTTAATGTCCCTGGC 59.109 45.455 0.00 0.00 30.55 4.85
3143 3677 2.215942 ACACTTTAATGTCCCTGGCC 57.784 50.000 0.00 0.00 0.00 5.36
3144 3678 1.094785 CACTTTAATGTCCCTGGCCG 58.905 55.000 0.00 0.00 0.00 6.13
3145 3679 0.696501 ACTTTAATGTCCCTGGCCGT 59.303 50.000 0.00 0.00 0.00 5.68
3146 3680 1.339727 ACTTTAATGTCCCTGGCCGTC 60.340 52.381 0.00 0.00 0.00 4.79
3147 3681 0.034863 TTTAATGTCCCTGGCCGTCC 60.035 55.000 0.00 0.00 0.00 4.79
3148 3682 2.246761 TTAATGTCCCTGGCCGTCCG 62.247 60.000 0.00 0.00 34.14 4.79
3151 3685 3.782443 GTCCCTGGCCGTCCGATT 61.782 66.667 0.00 0.00 34.14 3.34
3152 3686 3.781307 TCCCTGGCCGTCCGATTG 61.781 66.667 0.00 0.00 34.14 2.67
3154 3688 4.473520 CCTGGCCGTCCGATTGCT 62.474 66.667 0.00 0.00 34.14 3.91
3155 3689 3.197790 CTGGCCGTCCGATTGCTG 61.198 66.667 0.00 0.00 34.14 4.41
3158 3692 3.204827 GCCGTCCGATTGCTGCAT 61.205 61.111 1.84 0.00 0.00 3.96
3159 3693 2.711311 CCGTCCGATTGCTGCATG 59.289 61.111 1.84 0.00 0.00 4.06
3160 3694 2.108514 CCGTCCGATTGCTGCATGT 61.109 57.895 1.84 0.00 0.00 3.21
3161 3695 1.061411 CGTCCGATTGCTGCATGTG 59.939 57.895 1.84 0.00 0.00 3.21
3162 3696 1.226491 GTCCGATTGCTGCATGTGC 60.226 57.895 1.84 0.00 42.50 4.57
3163 3697 2.103538 CCGATTGCTGCATGTGCC 59.896 61.111 1.84 0.00 41.18 5.01
3164 3698 2.277692 CGATTGCTGCATGTGCCG 60.278 61.111 1.84 0.00 41.18 5.69
3165 3699 2.752939 CGATTGCTGCATGTGCCGA 61.753 57.895 1.84 0.00 41.18 5.54
3166 3700 1.731700 GATTGCTGCATGTGCCGAT 59.268 52.632 1.84 0.00 41.18 4.18
3167 3701 0.317603 GATTGCTGCATGTGCCGATC 60.318 55.000 1.84 0.00 41.18 3.69
3168 3702 0.750546 ATTGCTGCATGTGCCGATCT 60.751 50.000 1.84 0.00 41.18 2.75
3169 3703 0.107752 TTGCTGCATGTGCCGATCTA 60.108 50.000 1.84 0.00 41.18 1.98
3170 3704 0.107268 TGCTGCATGTGCCGATCTAT 59.893 50.000 0.00 0.00 41.18 1.98
3171 3705 0.795085 GCTGCATGTGCCGATCTATC 59.205 55.000 2.07 0.00 41.18 2.08
3172 3706 1.607509 GCTGCATGTGCCGATCTATCT 60.608 52.381 2.07 0.00 41.18 1.98
3173 3707 2.067013 CTGCATGTGCCGATCTATCTG 58.933 52.381 2.07 0.00 41.18 2.90
3174 3708 1.413812 TGCATGTGCCGATCTATCTGT 59.586 47.619 2.07 0.00 41.18 3.41
3175 3709 2.158914 TGCATGTGCCGATCTATCTGTT 60.159 45.455 2.07 0.00 41.18 3.16
3176 3710 2.222678 GCATGTGCCGATCTATCTGTTG 59.777 50.000 0.00 0.00 34.31 3.33
3177 3711 2.602257 TGTGCCGATCTATCTGTTGG 57.398 50.000 0.00 0.00 0.00 3.77
3178 3712 1.138859 TGTGCCGATCTATCTGTTGGG 59.861 52.381 0.00 0.00 0.00 4.12
3179 3713 0.106708 TGCCGATCTATCTGTTGGGC 59.893 55.000 0.00 0.00 38.99 5.36
3180 3714 0.603975 GCCGATCTATCTGTTGGGCC 60.604 60.000 0.00 0.00 34.47 5.80
3181 3715 0.319900 CCGATCTATCTGTTGGGCCG 60.320 60.000 0.00 0.00 0.00 6.13
3182 3716 0.946221 CGATCTATCTGTTGGGCCGC 60.946 60.000 0.00 0.00 0.00 6.53
3183 3717 0.394565 GATCTATCTGTTGGGCCGCT 59.605 55.000 0.00 0.00 0.00 5.52
3184 3718 0.107456 ATCTATCTGTTGGGCCGCTG 59.893 55.000 0.00 0.00 0.00 5.18
3185 3719 2.124736 TATCTGTTGGGCCGCTGC 60.125 61.111 0.00 0.00 0.00 5.25
3186 3720 2.599645 CTATCTGTTGGGCCGCTGCT 62.600 60.000 0.00 0.00 37.74 4.24
3187 3721 2.593468 TATCTGTTGGGCCGCTGCTC 62.593 60.000 0.00 0.00 38.98 4.26
3205 3739 2.778299 CTCCGCAGAGCTATCTAGACT 58.222 52.381 0.00 0.00 33.22 3.24
3206 3740 3.146066 CTCCGCAGAGCTATCTAGACTT 58.854 50.000 0.00 0.00 33.22 3.01
3207 3741 2.881513 TCCGCAGAGCTATCTAGACTTG 59.118 50.000 0.00 0.00 33.22 3.16
3208 3742 2.621055 CCGCAGAGCTATCTAGACTTGT 59.379 50.000 0.00 0.00 33.22 3.16
3209 3743 3.067461 CCGCAGAGCTATCTAGACTTGTT 59.933 47.826 0.00 0.00 33.22 2.83
3210 3744 4.041049 CGCAGAGCTATCTAGACTTGTTG 58.959 47.826 0.00 0.00 33.22 3.33
3211 3745 4.439426 CGCAGAGCTATCTAGACTTGTTGT 60.439 45.833 0.00 0.00 33.22 3.32
3212 3746 5.415221 GCAGAGCTATCTAGACTTGTTGTT 58.585 41.667 0.00 0.00 33.22 2.83
3213 3747 5.290643 GCAGAGCTATCTAGACTTGTTGTTG 59.709 44.000 0.00 0.00 33.22 3.33
3214 3748 6.625362 CAGAGCTATCTAGACTTGTTGTTGA 58.375 40.000 0.00 0.00 33.22 3.18
3215 3749 7.264221 CAGAGCTATCTAGACTTGTTGTTGAT 58.736 38.462 0.00 0.00 33.22 2.57
3216 3750 7.434897 CAGAGCTATCTAGACTTGTTGTTGATC 59.565 40.741 0.00 0.00 33.22 2.92
3217 3751 6.269315 AGCTATCTAGACTTGTTGTTGATCG 58.731 40.000 0.00 0.00 0.00 3.69
3218 3752 5.460419 GCTATCTAGACTTGTTGTTGATCGG 59.540 44.000 0.00 0.00 0.00 4.18
3219 3753 4.188247 TCTAGACTTGTTGTTGATCGGG 57.812 45.455 0.00 0.00 0.00 5.14
3220 3754 1.523758 AGACTTGTTGTTGATCGGGC 58.476 50.000 0.00 0.00 0.00 6.13
3221 3755 0.521735 GACTTGTTGTTGATCGGGCC 59.478 55.000 0.00 0.00 0.00 5.80
3222 3756 0.179004 ACTTGTTGTTGATCGGGCCA 60.179 50.000 4.39 0.00 0.00 5.36
3223 3757 0.523072 CTTGTTGTTGATCGGGCCAG 59.477 55.000 4.39 0.00 0.00 4.85
3224 3758 0.893270 TTGTTGTTGATCGGGCCAGG 60.893 55.000 4.39 0.00 0.00 4.45
3225 3759 1.303317 GTTGTTGATCGGGCCAGGT 60.303 57.895 4.39 0.00 0.00 4.00
3226 3760 0.893727 GTTGTTGATCGGGCCAGGTT 60.894 55.000 4.39 0.00 0.00 3.50
3227 3761 0.178975 TTGTTGATCGGGCCAGGTTT 60.179 50.000 4.39 0.00 0.00 3.27
3228 3762 0.178975 TGTTGATCGGGCCAGGTTTT 60.179 50.000 4.39 0.00 0.00 2.43
3229 3763 0.243636 GTTGATCGGGCCAGGTTTTG 59.756 55.000 4.39 0.00 0.00 2.44
3230 3764 1.531739 TTGATCGGGCCAGGTTTTGC 61.532 55.000 4.39 0.00 0.00 3.68
3231 3765 1.678970 GATCGGGCCAGGTTTTGCT 60.679 57.895 4.39 0.00 0.00 3.91
3232 3766 1.228862 ATCGGGCCAGGTTTTGCTT 60.229 52.632 4.39 0.00 0.00 3.91
3233 3767 0.039035 ATCGGGCCAGGTTTTGCTTA 59.961 50.000 4.39 0.00 0.00 3.09
3234 3768 0.039035 TCGGGCCAGGTTTTGCTTAT 59.961 50.000 4.39 0.00 0.00 1.73
3235 3769 0.894835 CGGGCCAGGTTTTGCTTATT 59.105 50.000 4.39 0.00 0.00 1.40
3236 3770 1.404047 CGGGCCAGGTTTTGCTTATTG 60.404 52.381 4.39 0.00 0.00 1.90
3237 3771 1.066215 GGGCCAGGTTTTGCTTATTGG 60.066 52.381 4.39 0.00 0.00 3.16
3238 3772 1.899142 GGCCAGGTTTTGCTTATTGGA 59.101 47.619 0.00 0.00 0.00 3.53
3239 3773 2.353704 GGCCAGGTTTTGCTTATTGGAC 60.354 50.000 0.00 0.00 0.00 4.02
3240 3774 2.353704 GCCAGGTTTTGCTTATTGGACC 60.354 50.000 0.00 0.00 0.00 4.46
3241 3775 2.094752 CCAGGTTTTGCTTATTGGACCG 60.095 50.000 0.00 0.00 32.55 4.79
3242 3776 2.094752 CAGGTTTTGCTTATTGGACCGG 60.095 50.000 0.00 0.00 32.55 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1375 1520 8.559536 CAGCAAGTATTTGAGTGTAAAGAAAGA 58.440 33.333 1.56 0.00 36.36 2.52
1376 1521 8.559536 TCAGCAAGTATTTGAGTGTAAAGAAAG 58.440 33.333 1.56 0.00 36.36 2.62
1378 1523 8.445275 TTCAGCAAGTATTTGAGTGTAAAGAA 57.555 30.769 1.56 0.00 36.36 2.52
1379 1524 8.445275 TTTCAGCAAGTATTTGAGTGTAAAGA 57.555 30.769 1.56 0.00 36.36 2.52
1380 1525 9.683069 AATTTCAGCAAGTATTTGAGTGTAAAG 57.317 29.630 1.56 0.00 36.36 1.85
1383 1528 9.502091 ACTAATTTCAGCAAGTATTTGAGTGTA 57.498 29.630 1.56 0.00 36.36 2.90
1384 1529 8.396272 ACTAATTTCAGCAAGTATTTGAGTGT 57.604 30.769 1.56 0.00 36.36 3.55
1394 1539 9.372369 GACTTGTAGATACTAATTTCAGCAAGT 57.628 33.333 12.64 12.64 39.48 3.16
1397 1542 7.847096 TGGACTTGTAGATACTAATTTCAGCA 58.153 34.615 0.00 0.00 0.00 4.41
1398 1543 8.198109 TCTGGACTTGTAGATACTAATTTCAGC 58.802 37.037 0.00 0.00 0.00 4.26
1405 1550 9.982651 GCAATTATCTGGACTTGTAGATACTAA 57.017 33.333 0.00 0.00 36.06 2.24
1406 1551 9.368416 AGCAATTATCTGGACTTGTAGATACTA 57.632 33.333 0.00 0.00 36.06 1.82
1408 1553 8.144478 TCAGCAATTATCTGGACTTGTAGATAC 58.856 37.037 6.95 0.00 36.06 2.24
1412 1557 7.615582 TTTCAGCAATTATCTGGACTTGTAG 57.384 36.000 6.95 0.00 32.63 2.74
1414 1559 7.318141 CAATTTCAGCAATTATCTGGACTTGT 58.682 34.615 6.95 0.00 32.90 3.16
1415 1560 6.755141 CCAATTTCAGCAATTATCTGGACTTG 59.245 38.462 9.49 9.49 32.90 3.16
1420 1565 6.870769 AGAACCAATTTCAGCAATTATCTGG 58.129 36.000 6.95 0.00 36.57 3.86
1425 1570 9.421806 CACATAAAGAACCAATTTCAGCAATTA 57.578 29.630 0.00 0.00 36.57 1.40
1426 1571 8.149647 TCACATAAAGAACCAATTTCAGCAATT 58.850 29.630 0.00 0.00 36.57 2.32
1427 1572 7.669427 TCACATAAAGAACCAATTTCAGCAAT 58.331 30.769 0.00 0.00 36.57 3.56
1428 1573 7.048629 TCACATAAAGAACCAATTTCAGCAA 57.951 32.000 0.00 0.00 36.57 3.91
1971 2499 0.322816 ATGCAACCTGTCTTCCGCAT 60.323 50.000 0.00 0.00 35.36 4.73
2254 2782 4.842531 ATCACCAGTTCACCACATATGA 57.157 40.909 10.38 0.00 0.00 2.15
2662 3194 2.270352 AAGGATGAAGCGTGGTTGAA 57.730 45.000 0.00 0.00 0.00 2.69
2805 3339 4.979197 CGATTACTTTGCTACAGAGGCTAG 59.021 45.833 0.00 0.00 0.00 3.42
2809 3343 6.042777 TCAATCGATTACTTTGCTACAGAGG 58.957 40.000 10.97 0.00 0.00 3.69
2810 3344 7.706281 ATCAATCGATTACTTTGCTACAGAG 57.294 36.000 10.97 0.00 0.00 3.35
2811 3345 8.131455 GAATCAATCGATTACTTTGCTACAGA 57.869 34.615 10.97 0.00 42.06 3.41
2837 3371 6.018994 GTGGACAAATGACTATCGTTATCCAC 60.019 42.308 20.50 20.50 44.95 4.02
2838 3372 6.046593 GTGGACAAATGACTATCGTTATCCA 58.953 40.000 10.52 10.52 37.93 3.41
2839 3373 6.281405 AGTGGACAAATGACTATCGTTATCC 58.719 40.000 6.90 6.90 34.11 2.59
2840 3374 7.772332 AAGTGGACAAATGACTATCGTTATC 57.228 36.000 0.00 0.00 0.00 1.75
2841 3375 9.314321 CTAAAGTGGACAAATGACTATCGTTAT 57.686 33.333 0.00 0.00 0.00 1.89
2842 3376 8.308931 ACTAAAGTGGACAAATGACTATCGTTA 58.691 33.333 0.00 0.00 0.00 3.18
2843 3377 7.159372 ACTAAAGTGGACAAATGACTATCGTT 58.841 34.615 0.00 0.00 0.00 3.85
2844 3378 6.698380 ACTAAAGTGGACAAATGACTATCGT 58.302 36.000 0.00 0.00 0.00 3.73
2845 3379 6.255887 GGACTAAAGTGGACAAATGACTATCG 59.744 42.308 0.00 0.00 0.00 2.92
2846 3380 7.331791 AGGACTAAAGTGGACAAATGACTATC 58.668 38.462 0.00 0.00 0.00 2.08
2847 3381 7.259088 AGGACTAAAGTGGACAAATGACTAT 57.741 36.000 0.00 0.00 0.00 2.12
2848 3382 6.681729 AGGACTAAAGTGGACAAATGACTA 57.318 37.500 0.00 0.00 0.00 2.59
2849 3383 5.568620 AGGACTAAAGTGGACAAATGACT 57.431 39.130 0.00 0.00 0.00 3.41
2850 3384 6.486993 AGAAAGGACTAAAGTGGACAAATGAC 59.513 38.462 0.00 0.00 0.00 3.06
2851 3385 6.601332 AGAAAGGACTAAAGTGGACAAATGA 58.399 36.000 0.00 0.00 0.00 2.57
2852 3386 6.884280 AGAAAGGACTAAAGTGGACAAATG 57.116 37.500 0.00 0.00 0.00 2.32
2853 3387 8.218488 AGTAAGAAAGGACTAAAGTGGACAAAT 58.782 33.333 0.00 0.00 0.00 2.32
2854 3388 7.571025 AGTAAGAAAGGACTAAAGTGGACAAA 58.429 34.615 0.00 0.00 0.00 2.83
2855 3389 7.070821 AGAGTAAGAAAGGACTAAAGTGGACAA 59.929 37.037 0.00 0.00 0.00 3.18
2856 3390 6.553852 AGAGTAAGAAAGGACTAAAGTGGACA 59.446 38.462 0.00 0.00 0.00 4.02
2857 3391 6.869388 CAGAGTAAGAAAGGACTAAAGTGGAC 59.131 42.308 0.00 0.00 0.00 4.02
2858 3392 6.553852 ACAGAGTAAGAAAGGACTAAAGTGGA 59.446 38.462 0.00 0.00 0.00 4.02
2859 3393 6.760291 ACAGAGTAAGAAAGGACTAAAGTGG 58.240 40.000 0.00 0.00 0.00 4.00
2860 3394 9.930693 ATAACAGAGTAAGAAAGGACTAAAGTG 57.069 33.333 0.00 0.00 0.00 3.16
2865 3399 9.970553 TGTAGATAACAGAGTAAGAAAGGACTA 57.029 33.333 0.00 0.00 33.01 2.59
2866 3400 8.880991 TGTAGATAACAGAGTAAGAAAGGACT 57.119 34.615 0.00 0.00 33.01 3.85
2881 3415 6.109156 TGCTGGACTTTTCTGTAGATAACA 57.891 37.500 0.00 0.00 36.42 2.41
2882 3416 6.166982 ACTGCTGGACTTTTCTGTAGATAAC 58.833 40.000 0.00 0.00 0.00 1.89
2883 3417 6.360370 ACTGCTGGACTTTTCTGTAGATAA 57.640 37.500 0.00 0.00 0.00 1.75
2884 3418 6.360370 AACTGCTGGACTTTTCTGTAGATA 57.640 37.500 0.00 0.00 0.00 1.98
2885 3419 4.899352 ACTGCTGGACTTTTCTGTAGAT 57.101 40.909 0.00 0.00 0.00 1.98
2886 3420 4.689612 AACTGCTGGACTTTTCTGTAGA 57.310 40.909 0.00 0.00 0.00 2.59
2887 3421 4.214332 GGAAACTGCTGGACTTTTCTGTAG 59.786 45.833 0.00 0.00 0.00 2.74
2888 3422 4.134563 GGAAACTGCTGGACTTTTCTGTA 58.865 43.478 0.00 0.00 0.00 2.74
2889 3423 2.952310 GGAAACTGCTGGACTTTTCTGT 59.048 45.455 0.00 0.00 0.00 3.41
2890 3424 3.217626 AGGAAACTGCTGGACTTTTCTG 58.782 45.455 0.00 0.00 41.13 3.02
2891 3425 3.584733 AGGAAACTGCTGGACTTTTCT 57.415 42.857 0.00 0.00 41.13 2.52
2904 3438 2.539081 GGGGGCTGGACAGGAAACT 61.539 63.158 1.01 0.00 46.44 2.66
2905 3439 2.035783 GGGGGCTGGACAGGAAAC 59.964 66.667 1.01 0.00 0.00 2.78
2906 3440 3.646715 CGGGGGCTGGACAGGAAA 61.647 66.667 1.01 0.00 0.00 3.13
2907 3441 4.974438 ACGGGGGCTGGACAGGAA 62.974 66.667 1.01 0.00 0.00 3.36
2908 3442 4.974438 AACGGGGGCTGGACAGGA 62.974 66.667 1.01 0.00 0.00 3.86
2909 3443 4.410400 GAACGGGGGCTGGACAGG 62.410 72.222 1.01 0.00 0.00 4.00
2910 3444 2.804828 GAAGAACGGGGGCTGGACAG 62.805 65.000 0.00 0.00 0.00 3.51
2911 3445 2.852075 AAGAACGGGGGCTGGACA 60.852 61.111 0.00 0.00 0.00 4.02
2912 3446 2.046217 GAAGAACGGGGGCTGGAC 60.046 66.667 0.00 0.00 0.00 4.02
2913 3447 3.327404 GGAAGAACGGGGGCTGGA 61.327 66.667 0.00 0.00 0.00 3.86
2914 3448 3.330720 AGGAAGAACGGGGGCTGG 61.331 66.667 0.00 0.00 0.00 4.85
2915 3449 2.045926 CAGGAAGAACGGGGGCTG 60.046 66.667 0.00 0.00 0.00 4.85
2916 3450 4.035102 GCAGGAAGAACGGGGGCT 62.035 66.667 0.00 0.00 0.00 5.19
2917 3451 3.645268 ATGCAGGAAGAACGGGGGC 62.645 63.158 0.00 0.00 0.00 5.80
2918 3452 0.611896 AAATGCAGGAAGAACGGGGG 60.612 55.000 0.00 0.00 0.00 5.40
2919 3453 1.067635 CAAAATGCAGGAAGAACGGGG 60.068 52.381 0.00 0.00 0.00 5.73
2920 3454 1.067635 CCAAAATGCAGGAAGAACGGG 60.068 52.381 0.00 0.00 0.00 5.28
2921 3455 1.885887 TCCAAAATGCAGGAAGAACGG 59.114 47.619 0.00 0.00 0.00 4.44
2922 3456 3.641437 TTCCAAAATGCAGGAAGAACG 57.359 42.857 1.16 0.00 38.91 3.95
2923 3457 3.735746 CGTTTCCAAAATGCAGGAAGAAC 59.264 43.478 5.41 2.27 44.15 3.01
2924 3458 3.634448 TCGTTTCCAAAATGCAGGAAGAA 59.366 39.130 5.41 0.00 44.15 2.52
2925 3459 3.218453 TCGTTTCCAAAATGCAGGAAGA 58.782 40.909 5.41 0.00 44.15 2.87
2926 3460 3.568538 CTCGTTTCCAAAATGCAGGAAG 58.431 45.455 5.41 0.00 44.15 3.46
2927 3461 2.288152 GCTCGTTTCCAAAATGCAGGAA 60.288 45.455 1.16 1.16 41.92 3.36
2928 3462 1.269448 GCTCGTTTCCAAAATGCAGGA 59.731 47.619 0.00 0.00 0.00 3.86
2929 3463 1.669795 GGCTCGTTTCCAAAATGCAGG 60.670 52.381 0.00 0.00 0.00 4.85
2930 3464 1.000385 TGGCTCGTTTCCAAAATGCAG 60.000 47.619 0.00 0.00 0.00 4.41
2931 3465 1.035923 TGGCTCGTTTCCAAAATGCA 58.964 45.000 0.00 0.00 0.00 3.96
2932 3466 2.262211 GATGGCTCGTTTCCAAAATGC 58.738 47.619 0.00 0.00 37.13 3.56
2933 3467 3.504863 CTGATGGCTCGTTTCCAAAATG 58.495 45.455 0.00 0.00 37.13 2.32
2934 3468 2.493278 CCTGATGGCTCGTTTCCAAAAT 59.507 45.455 0.00 0.00 37.13 1.82
2935 3469 1.885887 CCTGATGGCTCGTTTCCAAAA 59.114 47.619 0.00 0.00 37.13 2.44
2936 3470 1.533625 CCTGATGGCTCGTTTCCAAA 58.466 50.000 0.00 0.00 37.13 3.28
2937 3471 3.248043 CCTGATGGCTCGTTTCCAA 57.752 52.632 0.00 0.00 37.13 3.53
2948 3482 0.107017 AAGTCCGAATGGCCTGATGG 60.107 55.000 3.32 0.67 34.14 3.51
2949 3483 1.402968 CAAAGTCCGAATGGCCTGATG 59.597 52.381 3.32 0.00 34.14 3.07
2950 3484 1.004745 ACAAAGTCCGAATGGCCTGAT 59.995 47.619 3.32 0.00 34.14 2.90
2951 3485 0.400213 ACAAAGTCCGAATGGCCTGA 59.600 50.000 3.32 0.00 34.14 3.86
2952 3486 2.009774 CTACAAAGTCCGAATGGCCTG 58.990 52.381 3.32 0.00 34.14 4.85
2953 3487 1.628846 ACTACAAAGTCCGAATGGCCT 59.371 47.619 3.32 0.00 34.14 5.19
2954 3488 2.109425 ACTACAAAGTCCGAATGGCC 57.891 50.000 0.00 0.00 34.14 5.36
2955 3489 3.071479 TGAACTACAAAGTCCGAATGGC 58.929 45.455 0.00 0.00 33.75 4.40
2956 3490 3.125316 GCTGAACTACAAAGTCCGAATGG 59.875 47.826 0.00 0.00 33.75 3.16
2957 3491 3.125316 GGCTGAACTACAAAGTCCGAATG 59.875 47.826 0.00 0.00 33.75 2.67
2958 3492 3.335579 GGCTGAACTACAAAGTCCGAAT 58.664 45.455 0.00 0.00 33.75 3.34
2959 3493 2.549349 GGGCTGAACTACAAAGTCCGAA 60.549 50.000 0.00 0.00 33.75 4.30
2960 3494 1.001633 GGGCTGAACTACAAAGTCCGA 59.998 52.381 0.00 0.00 33.75 4.55
2961 3495 1.002087 AGGGCTGAACTACAAAGTCCG 59.998 52.381 0.00 0.00 40.76 4.79
2962 3496 2.615747 GGAGGGCTGAACTACAAAGTCC 60.616 54.545 0.00 0.00 33.75 3.85
2963 3497 2.701107 GGAGGGCTGAACTACAAAGTC 58.299 52.381 0.00 0.00 33.75 3.01
2964 3498 1.002087 CGGAGGGCTGAACTACAAAGT 59.998 52.381 0.00 0.00 37.65 2.66
2965 3499 1.726853 CGGAGGGCTGAACTACAAAG 58.273 55.000 0.00 0.00 0.00 2.77
2966 3500 3.927555 CGGAGGGCTGAACTACAAA 57.072 52.632 0.00 0.00 0.00 2.83
3017 3551 9.965824 CCGATGGCTTTCAATAAAAATAGTATT 57.034 29.630 0.00 0.00 0.00 1.89
3018 3552 8.082242 GCCGATGGCTTTCAATAAAAATAGTAT 58.918 33.333 0.00 0.00 46.69 2.12
3019 3553 7.422399 GCCGATGGCTTTCAATAAAAATAGTA 58.578 34.615 0.00 0.00 46.69 1.82
3020 3554 6.273071 GCCGATGGCTTTCAATAAAAATAGT 58.727 36.000 0.00 0.00 46.69 2.12
3021 3555 6.753897 GCCGATGGCTTTCAATAAAAATAG 57.246 37.500 0.00 0.00 46.69 1.73
3037 3571 6.587990 CACATATACTTCTCTAAAGCCGATGG 59.412 42.308 0.00 0.00 0.00 3.51
3038 3572 6.587990 CCACATATACTTCTCTAAAGCCGATG 59.412 42.308 0.00 0.00 0.00 3.84
3039 3573 6.493802 TCCACATATACTTCTCTAAAGCCGAT 59.506 38.462 0.00 0.00 0.00 4.18
3040 3574 5.831525 TCCACATATACTTCTCTAAAGCCGA 59.168 40.000 0.00 0.00 0.00 5.54
3041 3575 6.085555 TCCACATATACTTCTCTAAAGCCG 57.914 41.667 0.00 0.00 0.00 5.52
3042 3576 7.727181 TCTTCCACATATACTTCTCTAAAGCC 58.273 38.462 0.00 0.00 0.00 4.35
3043 3577 9.418045 GATCTTCCACATATACTTCTCTAAAGC 57.582 37.037 0.00 0.00 0.00 3.51
3044 3578 9.921637 GGATCTTCCACATATACTTCTCTAAAG 57.078 37.037 0.00 0.00 36.28 1.85
3045 3579 9.661954 AGGATCTTCCACATATACTTCTCTAAA 57.338 33.333 0.00 0.00 39.61 1.85
3046 3580 9.303116 GAGGATCTTCCACATATACTTCTCTAA 57.697 37.037 0.00 0.00 39.61 2.10
3047 3581 8.448816 TGAGGATCTTCCACATATACTTCTCTA 58.551 37.037 1.90 0.00 39.61 2.43
3048 3582 7.301420 TGAGGATCTTCCACATATACTTCTCT 58.699 38.462 1.90 0.00 39.61 3.10
3049 3583 7.232534 ACTGAGGATCTTCCACATATACTTCTC 59.767 40.741 1.90 0.00 39.61 2.87
3050 3584 7.072562 ACTGAGGATCTTCCACATATACTTCT 58.927 38.462 1.90 0.00 39.61 2.85
3051 3585 7.296628 ACTGAGGATCTTCCACATATACTTC 57.703 40.000 1.90 0.00 39.61 3.01
3052 3586 7.345653 TGAACTGAGGATCTTCCACATATACTT 59.654 37.037 1.90 0.00 39.61 2.24
3053 3587 6.841229 TGAACTGAGGATCTTCCACATATACT 59.159 38.462 1.90 0.00 39.61 2.12
3054 3588 7.055667 TGAACTGAGGATCTTCCACATATAC 57.944 40.000 1.90 0.00 39.61 1.47
3055 3589 7.038729 GGATGAACTGAGGATCTTCCACATATA 60.039 40.741 13.77 0.00 39.61 0.86
3056 3590 6.239829 GGATGAACTGAGGATCTTCCACATAT 60.240 42.308 13.77 0.00 39.61 1.78
3057 3591 5.070981 GGATGAACTGAGGATCTTCCACATA 59.929 44.000 13.77 0.00 39.61 2.29
3058 3592 4.141528 GGATGAACTGAGGATCTTCCACAT 60.142 45.833 13.77 3.21 39.61 3.21
3059 3593 3.198635 GGATGAACTGAGGATCTTCCACA 59.801 47.826 13.77 0.00 39.61 4.17
3060 3594 3.454082 AGGATGAACTGAGGATCTTCCAC 59.546 47.826 18.13 0.00 39.61 4.02
3061 3595 3.729108 AGGATGAACTGAGGATCTTCCA 58.271 45.455 18.13 0.00 39.61 3.53
3062 3596 6.432403 AATAGGATGAACTGAGGATCTTCC 57.568 41.667 1.90 11.85 38.20 3.46
3063 3597 8.865090 TCTTAATAGGATGAACTGAGGATCTTC 58.135 37.037 0.00 0.00 34.92 2.87
3064 3598 8.789767 TCTTAATAGGATGAACTGAGGATCTT 57.210 34.615 0.00 0.00 34.92 2.40
3065 3599 8.789767 TTCTTAATAGGATGAACTGAGGATCT 57.210 34.615 0.00 0.00 34.92 2.75
3066 3600 9.267084 GTTTCTTAATAGGATGAACTGAGGATC 57.733 37.037 0.00 0.00 0.00 3.36
3067 3601 8.772250 TGTTTCTTAATAGGATGAACTGAGGAT 58.228 33.333 0.00 0.00 0.00 3.24
3068 3602 8.146053 TGTTTCTTAATAGGATGAACTGAGGA 57.854 34.615 0.00 0.00 0.00 3.71
3069 3603 8.792830 TTGTTTCTTAATAGGATGAACTGAGG 57.207 34.615 0.00 0.00 0.00 3.86
3083 3617 9.143155 GGTCACCCCATTATATTGTTTCTTAAT 57.857 33.333 0.00 0.00 0.00 1.40
3084 3618 8.340757 AGGTCACCCCATTATATTGTTTCTTAA 58.659 33.333 0.00 0.00 34.66 1.85
3085 3619 7.878495 AGGTCACCCCATTATATTGTTTCTTA 58.122 34.615 0.00 0.00 34.66 2.10
3086 3620 6.741724 AGGTCACCCCATTATATTGTTTCTT 58.258 36.000 0.00 0.00 34.66 2.52
3087 3621 6.341408 AGGTCACCCCATTATATTGTTTCT 57.659 37.500 0.00 0.00 34.66 2.52
3088 3622 6.204108 CGTAGGTCACCCCATTATATTGTTTC 59.796 42.308 0.00 0.00 34.66 2.78
3089 3623 6.059484 CGTAGGTCACCCCATTATATTGTTT 58.941 40.000 0.00 0.00 34.66 2.83
3090 3624 5.367352 TCGTAGGTCACCCCATTATATTGTT 59.633 40.000 0.00 0.00 34.66 2.83
3091 3625 4.903049 TCGTAGGTCACCCCATTATATTGT 59.097 41.667 0.00 0.00 34.66 2.71
3092 3626 5.477607 TCGTAGGTCACCCCATTATATTG 57.522 43.478 0.00 0.00 34.66 1.90
3093 3627 4.020485 GCTCGTAGGTCACCCCATTATATT 60.020 45.833 0.00 0.00 34.66 1.28
3094 3628 3.514309 GCTCGTAGGTCACCCCATTATAT 59.486 47.826 0.00 0.00 34.66 0.86
3095 3629 2.895404 GCTCGTAGGTCACCCCATTATA 59.105 50.000 0.00 0.00 34.66 0.98
3096 3630 1.692519 GCTCGTAGGTCACCCCATTAT 59.307 52.381 0.00 0.00 34.66 1.28
3097 3631 1.117150 GCTCGTAGGTCACCCCATTA 58.883 55.000 0.00 0.00 34.66 1.90
3098 3632 1.623542 GGCTCGTAGGTCACCCCATT 61.624 60.000 0.00 0.00 34.66 3.16
3099 3633 2.064581 GGCTCGTAGGTCACCCCAT 61.065 63.158 0.00 0.00 34.66 4.00
3100 3634 2.682494 GGCTCGTAGGTCACCCCA 60.682 66.667 0.00 0.00 34.66 4.96
3101 3635 3.468140 GGGCTCGTAGGTCACCCC 61.468 72.222 0.00 0.00 34.23 4.95
3102 3636 2.363925 AGGGCTCGTAGGTCACCC 60.364 66.667 0.00 0.00 41.17 4.61
3103 3637 1.681327 TGAGGGCTCGTAGGTCACC 60.681 63.158 0.00 0.00 0.00 4.02
3104 3638 1.248785 TGTGAGGGCTCGTAGGTCAC 61.249 60.000 0.00 0.00 38.41 3.67
3105 3639 0.541063 TTGTGAGGGCTCGTAGGTCA 60.541 55.000 0.00 0.00 0.00 4.02
3106 3640 0.108756 GTTGTGAGGGCTCGTAGGTC 60.109 60.000 0.00 0.00 0.00 3.85
3107 3641 0.830444 TGTTGTGAGGGCTCGTAGGT 60.830 55.000 0.00 0.00 0.00 3.08
3108 3642 0.389948 GTGTTGTGAGGGCTCGTAGG 60.390 60.000 0.00 0.00 0.00 3.18
3109 3643 0.603569 AGTGTTGTGAGGGCTCGTAG 59.396 55.000 0.00 0.00 0.00 3.51
3110 3644 1.045407 AAGTGTTGTGAGGGCTCGTA 58.955 50.000 0.00 0.00 0.00 3.43
3111 3645 0.180406 AAAGTGTTGTGAGGGCTCGT 59.820 50.000 0.00 0.00 0.00 4.18
3112 3646 2.163818 TAAAGTGTTGTGAGGGCTCG 57.836 50.000 0.00 0.00 0.00 5.03
3113 3647 3.821033 ACATTAAAGTGTTGTGAGGGCTC 59.179 43.478 0.00 0.00 0.00 4.70
3114 3648 3.821033 GACATTAAAGTGTTGTGAGGGCT 59.179 43.478 0.00 0.00 31.16 5.19
3115 3649 3.057526 GGACATTAAAGTGTTGTGAGGGC 60.058 47.826 0.00 0.00 31.16 5.19
3116 3650 3.506067 GGGACATTAAAGTGTTGTGAGGG 59.494 47.826 0.00 0.00 31.16 4.30
3117 3651 4.216257 CAGGGACATTAAAGTGTTGTGAGG 59.784 45.833 0.00 0.00 31.16 3.86
3118 3652 4.216257 CCAGGGACATTAAAGTGTTGTGAG 59.784 45.833 0.00 0.00 31.16 3.51
3119 3653 4.141287 CCAGGGACATTAAAGTGTTGTGA 58.859 43.478 0.00 0.00 31.16 3.58
3120 3654 3.305335 GCCAGGGACATTAAAGTGTTGTG 60.305 47.826 0.00 0.00 31.16 3.33
3121 3655 2.890945 GCCAGGGACATTAAAGTGTTGT 59.109 45.455 0.00 0.00 31.16 3.32
3122 3656 2.231235 GGCCAGGGACATTAAAGTGTTG 59.769 50.000 0.00 0.00 31.16 3.33
3123 3657 2.525368 GGCCAGGGACATTAAAGTGTT 58.475 47.619 0.00 0.00 31.16 3.32
3124 3658 1.613255 CGGCCAGGGACATTAAAGTGT 60.613 52.381 2.24 0.00 34.39 3.55
3125 3659 1.094785 CGGCCAGGGACATTAAAGTG 58.905 55.000 2.24 0.00 0.00 3.16
3126 3660 0.696501 ACGGCCAGGGACATTAAAGT 59.303 50.000 2.24 0.00 0.00 2.66
3127 3661 1.379527 GACGGCCAGGGACATTAAAG 58.620 55.000 2.24 0.00 0.00 1.85
3128 3662 0.034863 GGACGGCCAGGGACATTAAA 60.035 55.000 0.00 0.00 0.00 1.52
3129 3663 1.605453 GGACGGCCAGGGACATTAA 59.395 57.895 0.00 0.00 0.00 1.40
3130 3664 2.727392 CGGACGGCCAGGGACATTA 61.727 63.158 8.76 0.00 0.00 1.90
3131 3665 4.096003 CGGACGGCCAGGGACATT 62.096 66.667 8.76 0.00 0.00 2.71
3134 3668 3.782443 AATCGGACGGCCAGGGAC 61.782 66.667 8.76 0.00 0.00 4.46
3135 3669 3.781307 CAATCGGACGGCCAGGGA 61.781 66.667 8.76 0.00 0.00 4.20
3137 3671 4.473520 AGCAATCGGACGGCCAGG 62.474 66.667 8.76 0.00 0.00 4.45
3138 3672 3.197790 CAGCAATCGGACGGCCAG 61.198 66.667 8.76 0.00 0.00 4.85
3141 3675 3.204827 ATGCAGCAATCGGACGGC 61.205 61.111 0.00 0.00 0.00 5.68
3142 3676 2.108514 ACATGCAGCAATCGGACGG 61.109 57.895 0.00 0.00 0.00 4.79
3143 3677 1.061411 CACATGCAGCAATCGGACG 59.939 57.895 0.00 0.00 0.00 4.79
3144 3678 1.226491 GCACATGCAGCAATCGGAC 60.226 57.895 0.00 0.00 41.59 4.79
3145 3679 2.409055 GGCACATGCAGCAATCGGA 61.409 57.895 0.00 0.00 44.36 4.55
3146 3680 2.103538 GGCACATGCAGCAATCGG 59.896 61.111 0.00 0.00 44.36 4.18
3147 3681 2.055310 ATCGGCACATGCAGCAATCG 62.055 55.000 0.00 7.16 44.36 3.34
3148 3682 0.317603 GATCGGCACATGCAGCAATC 60.318 55.000 0.00 10.10 44.36 2.67
3149 3683 0.750546 AGATCGGCACATGCAGCAAT 60.751 50.000 0.00 5.56 44.36 3.56
3150 3684 0.107752 TAGATCGGCACATGCAGCAA 60.108 50.000 0.00 1.21 44.36 3.91
3151 3685 0.107268 ATAGATCGGCACATGCAGCA 59.893 50.000 12.17 0.00 44.36 4.41
3152 3686 0.795085 GATAGATCGGCACATGCAGC 59.205 55.000 6.15 2.28 44.36 5.25
3153 3687 2.067013 CAGATAGATCGGCACATGCAG 58.933 52.381 6.15 1.43 44.36 4.41
3154 3688 1.413812 ACAGATAGATCGGCACATGCA 59.586 47.619 6.15 0.00 44.36 3.96
3155 3689 2.160822 ACAGATAGATCGGCACATGC 57.839 50.000 0.00 0.00 41.14 4.06
3156 3690 2.804527 CCAACAGATAGATCGGCACATG 59.195 50.000 0.00 0.00 0.00 3.21
3157 3691 2.224378 CCCAACAGATAGATCGGCACAT 60.224 50.000 0.00 0.00 0.00 3.21
3158 3692 1.138859 CCCAACAGATAGATCGGCACA 59.861 52.381 0.00 0.00 0.00 4.57
3159 3693 1.871080 CCCAACAGATAGATCGGCAC 58.129 55.000 0.00 0.00 0.00 5.01
3160 3694 0.106708 GCCCAACAGATAGATCGGCA 59.893 55.000 0.00 0.00 0.00 5.69
3161 3695 0.603975 GGCCCAACAGATAGATCGGC 60.604 60.000 0.00 0.00 0.00 5.54
3162 3696 0.319900 CGGCCCAACAGATAGATCGG 60.320 60.000 0.00 0.00 0.00 4.18
3163 3697 0.946221 GCGGCCCAACAGATAGATCG 60.946 60.000 0.00 0.00 0.00 3.69
3164 3698 0.394565 AGCGGCCCAACAGATAGATC 59.605 55.000 0.00 0.00 0.00 2.75
3165 3699 0.107456 CAGCGGCCCAACAGATAGAT 59.893 55.000 0.00 0.00 0.00 1.98
3166 3700 1.522092 CAGCGGCCCAACAGATAGA 59.478 57.895 0.00 0.00 0.00 1.98
3167 3701 2.182842 GCAGCGGCCCAACAGATAG 61.183 63.158 0.00 0.00 0.00 2.08
3168 3702 2.124736 GCAGCGGCCCAACAGATA 60.125 61.111 0.00 0.00 0.00 1.98
3169 3703 3.984193 GAGCAGCGGCCCAACAGAT 62.984 63.158 4.82 0.00 42.56 2.90
3170 3704 4.704833 GAGCAGCGGCCCAACAGA 62.705 66.667 4.82 0.00 42.56 3.41
3185 3719 2.778299 AGTCTAGATAGCTCTGCGGAG 58.222 52.381 18.77 18.77 42.18 4.63
3186 3720 2.881513 CAAGTCTAGATAGCTCTGCGGA 59.118 50.000 0.00 0.00 32.66 5.54
3187 3721 2.621055 ACAAGTCTAGATAGCTCTGCGG 59.379 50.000 0.00 0.00 32.66 5.69
3188 3722 3.980646 ACAAGTCTAGATAGCTCTGCG 57.019 47.619 0.00 0.00 32.66 5.18
3189 3723 5.004922 ACAACAAGTCTAGATAGCTCTGC 57.995 43.478 0.00 0.00 32.66 4.26
3190 3724 6.625362 TCAACAACAAGTCTAGATAGCTCTG 58.375 40.000 0.00 0.00 32.66 3.35
3191 3725 6.842437 TCAACAACAAGTCTAGATAGCTCT 57.158 37.500 0.00 0.00 35.39 4.09
3192 3726 6.416455 CGATCAACAACAAGTCTAGATAGCTC 59.584 42.308 0.00 0.00 0.00 4.09
3193 3727 6.269315 CGATCAACAACAAGTCTAGATAGCT 58.731 40.000 0.00 0.00 0.00 3.32
3194 3728 5.460419 CCGATCAACAACAAGTCTAGATAGC 59.540 44.000 0.00 0.00 0.00 2.97
3195 3729 5.980116 CCCGATCAACAACAAGTCTAGATAG 59.020 44.000 0.00 0.00 0.00 2.08
3196 3730 5.681437 GCCCGATCAACAACAAGTCTAGATA 60.681 44.000 0.00 0.00 0.00 1.98
3197 3731 4.759782 CCCGATCAACAACAAGTCTAGAT 58.240 43.478 0.00 0.00 0.00 1.98
3198 3732 3.616560 GCCCGATCAACAACAAGTCTAGA 60.617 47.826 0.00 0.00 0.00 2.43
3199 3733 2.673368 GCCCGATCAACAACAAGTCTAG 59.327 50.000 0.00 0.00 0.00 2.43
3200 3734 2.614481 GGCCCGATCAACAACAAGTCTA 60.614 50.000 0.00 0.00 0.00 2.59
3201 3735 1.523758 GCCCGATCAACAACAAGTCT 58.476 50.000 0.00 0.00 0.00 3.24
3202 3736 0.521735 GGCCCGATCAACAACAAGTC 59.478 55.000 0.00 0.00 0.00 3.01
3203 3737 0.179004 TGGCCCGATCAACAACAAGT 60.179 50.000 0.00 0.00 0.00 3.16
3204 3738 0.523072 CTGGCCCGATCAACAACAAG 59.477 55.000 0.00 0.00 0.00 3.16
3205 3739 0.893270 CCTGGCCCGATCAACAACAA 60.893 55.000 0.00 0.00 0.00 2.83
3206 3740 1.303236 CCTGGCCCGATCAACAACA 60.303 57.895 0.00 0.00 0.00 3.33
3207 3741 0.893727 AACCTGGCCCGATCAACAAC 60.894 55.000 0.00 0.00 0.00 3.32
3208 3742 0.178975 AAACCTGGCCCGATCAACAA 60.179 50.000 0.00 0.00 0.00 2.83
3209 3743 0.178975 AAAACCTGGCCCGATCAACA 60.179 50.000 0.00 0.00 0.00 3.33
3210 3744 0.243636 CAAAACCTGGCCCGATCAAC 59.756 55.000 0.00 0.00 0.00 3.18
3211 3745 1.531739 GCAAAACCTGGCCCGATCAA 61.532 55.000 0.00 0.00 0.00 2.57
3212 3746 1.976474 GCAAAACCTGGCCCGATCA 60.976 57.895 0.00 0.00 0.00 2.92
3213 3747 1.250840 AAGCAAAACCTGGCCCGATC 61.251 55.000 0.00 0.00 0.00 3.69
3214 3748 0.039035 TAAGCAAAACCTGGCCCGAT 59.961 50.000 0.00 0.00 0.00 4.18
3215 3749 0.039035 ATAAGCAAAACCTGGCCCGA 59.961 50.000 0.00 0.00 0.00 5.14
3216 3750 0.894835 AATAAGCAAAACCTGGCCCG 59.105 50.000 0.00 0.00 0.00 6.13
3217 3751 1.066215 CCAATAAGCAAAACCTGGCCC 60.066 52.381 0.00 0.00 0.00 5.80
3218 3752 1.899142 TCCAATAAGCAAAACCTGGCC 59.101 47.619 0.00 0.00 0.00 5.36
3219 3753 2.353704 GGTCCAATAAGCAAAACCTGGC 60.354 50.000 0.00 0.00 0.00 4.85
3220 3754 2.094752 CGGTCCAATAAGCAAAACCTGG 60.095 50.000 0.00 0.00 0.00 4.45
3221 3755 2.094752 CCGGTCCAATAAGCAAAACCTG 60.095 50.000 0.00 0.00 0.00 4.00
3222 3756 2.167662 CCGGTCCAATAAGCAAAACCT 58.832 47.619 0.00 0.00 0.00 3.50
3223 3757 2.647529 CCGGTCCAATAAGCAAAACC 57.352 50.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.