Multiple sequence alignment - TraesCS2B01G051100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G051100 chr2B 100.000 3212 0 0 1 3212 25068046 25071257 0.000000e+00 5932.0
1 TraesCS2B01G051100 chr2B 87.644 1044 93 14 1151 2167 24988622 24987588 0.000000e+00 1181.0
2 TraesCS2B01G051100 chr2A 92.089 2111 110 14 1151 3212 15959810 15961912 0.000000e+00 2920.0
3 TraesCS2B01G051100 chr2A 87.548 1044 97 18 1151 2167 15756460 15757497 0.000000e+00 1177.0
4 TraesCS2B01G051100 chr2A 82.887 672 61 26 505 1154 15959141 15959780 3.620000e-154 555.0
5 TraesCS2B01G051100 chr2A 92.213 244 16 3 209 451 15958885 15959126 3.070000e-90 342.0
6 TraesCS2B01G051100 chr2D 91.749 2121 109 12 1151 3212 13770218 13772331 0.000000e+00 2887.0
7 TraesCS2B01G051100 chr2D 87.896 1041 90 18 1151 2167 13724224 13723196 0.000000e+00 1192.0
8 TraesCS2B01G051100 chr2D 81.132 265 22 14 897 1156 13769949 13770190 1.520000e-43 187.0
9 TraesCS2B01G051100 chr3B 81.499 1081 152 30 1163 2216 700073302 700072243 0.000000e+00 845.0
10 TraesCS2B01G051100 chr3B 80.376 1065 164 27 1163 2205 700234855 700235896 0.000000e+00 767.0
11 TraesCS2B01G051100 chr7A 81.181 1084 158 34 1163 2214 51662492 51661423 0.000000e+00 830.0
12 TraesCS2B01G051100 chr7A 93.182 44 3 0 584 627 267128950 267128993 7.440000e-07 65.8
13 TraesCS2B01G051100 chr7D 81.170 1094 149 40 1163 2214 48824879 48823801 0.000000e+00 826.0
14 TraesCS2B01G051100 chr7D 79.590 1073 180 23 1163 2214 624769141 624770195 0.000000e+00 732.0
15 TraesCS2B01G051100 chr7D 77.730 925 140 36 1162 2050 552325071 552325965 1.030000e-139 507.0
16 TraesCS2B01G051100 chr7D 93.182 44 3 0 584 627 42007497 42007540 7.440000e-07 65.8
17 TraesCS2B01G051100 chr4A 80.833 1080 166 29 1163 2213 663696119 663695052 0.000000e+00 809.0
18 TraesCS2B01G051100 chr4A 80.037 1087 163 36 1163 2216 604105177 604104112 0.000000e+00 756.0
19 TraesCS2B01G051100 chr5D 78.387 967 164 33 1162 2110 557577270 557578209 1.280000e-163 586.0
20 TraesCS2B01G051100 chr7B 79.866 745 106 23 1343 2050 597453568 597454305 3.700000e-139 505.0
21 TraesCS2B01G051100 chr7B 83.333 72 12 0 584 655 161439308 161439237 2.070000e-07 67.6
22 TraesCS2B01G051100 chr6B 74.951 511 81 25 156 637 578407283 578406791 1.180000e-44 191.0
23 TraesCS2B01G051100 chr6A 74.269 513 83 28 156 637 532342794 532342300 1.530000e-38 171.0
24 TraesCS2B01G051100 chr6A 83.871 62 10 0 584 645 31261895 31261834 3.460000e-05 60.2
25 TraesCS2B01G051100 chr5A 83.871 62 10 0 566 627 305831097 305831158 3.460000e-05 60.2
26 TraesCS2B01G051100 chr4B 100.000 28 0 0 600 627 27537728 27537755 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G051100 chr2B 25068046 25071257 3211 False 5932.000000 5932 100.0000 1 3212 1 chr2B.!!$F1 3211
1 TraesCS2B01G051100 chr2B 24987588 24988622 1034 True 1181.000000 1181 87.6440 1151 2167 1 chr2B.!!$R1 1016
2 TraesCS2B01G051100 chr2A 15958885 15961912 3027 False 1272.333333 2920 89.0630 209 3212 3 chr2A.!!$F2 3003
3 TraesCS2B01G051100 chr2A 15756460 15757497 1037 False 1177.000000 1177 87.5480 1151 2167 1 chr2A.!!$F1 1016
4 TraesCS2B01G051100 chr2D 13769949 13772331 2382 False 1537.000000 2887 86.4405 897 3212 2 chr2D.!!$F1 2315
5 TraesCS2B01G051100 chr2D 13723196 13724224 1028 True 1192.000000 1192 87.8960 1151 2167 1 chr2D.!!$R1 1016
6 TraesCS2B01G051100 chr3B 700072243 700073302 1059 True 845.000000 845 81.4990 1163 2216 1 chr3B.!!$R1 1053
7 TraesCS2B01G051100 chr3B 700234855 700235896 1041 False 767.000000 767 80.3760 1163 2205 1 chr3B.!!$F1 1042
8 TraesCS2B01G051100 chr7A 51661423 51662492 1069 True 830.000000 830 81.1810 1163 2214 1 chr7A.!!$R1 1051
9 TraesCS2B01G051100 chr7D 48823801 48824879 1078 True 826.000000 826 81.1700 1163 2214 1 chr7D.!!$R1 1051
10 TraesCS2B01G051100 chr7D 624769141 624770195 1054 False 732.000000 732 79.5900 1163 2214 1 chr7D.!!$F3 1051
11 TraesCS2B01G051100 chr7D 552325071 552325965 894 False 507.000000 507 77.7300 1162 2050 1 chr7D.!!$F2 888
12 TraesCS2B01G051100 chr4A 663695052 663696119 1067 True 809.000000 809 80.8330 1163 2213 1 chr4A.!!$R2 1050
13 TraesCS2B01G051100 chr4A 604104112 604105177 1065 True 756.000000 756 80.0370 1163 2216 1 chr4A.!!$R1 1053
14 TraesCS2B01G051100 chr5D 557577270 557578209 939 False 586.000000 586 78.3870 1162 2110 1 chr5D.!!$F1 948
15 TraesCS2B01G051100 chr7B 597453568 597454305 737 False 505.000000 505 79.8660 1343 2050 1 chr7B.!!$F1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 0.109226 ACGGCTTGACTCGCTAGAAC 60.109 55.0 0.00 0.0 0.00 3.01 F
197 198 0.171455 CGGCTTGACTCGCTAGAACT 59.829 55.0 0.00 0.0 0.00 3.01 F
1000 1017 0.247934 CGTACACGATACGCTGCTGA 60.248 55.0 10.21 0.0 43.02 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1154 1215 0.034896 GAACGCCTTGAGGTTGAGGA 59.965 55.000 0.00 0.00 34.91 3.71 R
1330 1427 3.123620 CACCTCTGCTCGCTTGGC 61.124 66.667 0.00 0.00 0.00 4.52 R
2951 3170 0.528924 TACCGGTGGACTGTTCATCG 59.471 55.000 19.93 14.76 38.35 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.569127 TTAGATCCCATAAGCTTTACACCA 57.431 37.500 3.20 0.00 0.00 4.17
24 25 5.653255 AGATCCCATAAGCTTTACACCAT 57.347 39.130 3.20 0.00 0.00 3.55
25 26 6.763715 AGATCCCATAAGCTTTACACCATA 57.236 37.500 3.20 0.00 0.00 2.74
26 27 7.335127 AGATCCCATAAGCTTTACACCATAT 57.665 36.000 3.20 0.00 0.00 1.78
27 28 7.759607 AGATCCCATAAGCTTTACACCATATT 58.240 34.615 3.20 0.00 0.00 1.28
28 29 7.667219 AGATCCCATAAGCTTTACACCATATTG 59.333 37.037 3.20 0.00 0.00 1.90
29 30 6.905736 TCCCATAAGCTTTACACCATATTGA 58.094 36.000 3.20 0.00 0.00 2.57
30 31 7.350382 TCCCATAAGCTTTACACCATATTGAA 58.650 34.615 3.20 0.00 0.00 2.69
31 32 7.836685 TCCCATAAGCTTTACACCATATTGAAA 59.163 33.333 3.20 0.00 0.00 2.69
32 33 8.641541 CCCATAAGCTTTACACCATATTGAAAT 58.358 33.333 3.20 0.00 0.00 2.17
36 37 7.112452 AGCTTTACACCATATTGAAATTCCC 57.888 36.000 0.00 0.00 0.00 3.97
37 38 6.667414 AGCTTTACACCATATTGAAATTCCCA 59.333 34.615 0.00 0.00 0.00 4.37
38 39 7.180051 AGCTTTACACCATATTGAAATTCCCAA 59.820 33.333 0.00 0.00 0.00 4.12
39 40 7.986889 GCTTTACACCATATTGAAATTCCCAAT 59.013 33.333 9.89 9.89 37.86 3.16
40 41 9.889128 CTTTACACCATATTGAAATTCCCAATT 57.111 29.630 10.16 0.00 35.94 2.32
43 44 8.608185 ACACCATATTGAAATTCCCAATTAGT 57.392 30.769 10.16 4.98 35.94 2.24
44 45 8.477256 ACACCATATTGAAATTCCCAATTAGTG 58.523 33.333 10.16 14.44 35.94 2.74
57 58 4.813296 CAATTAGTGGAATAAGCCGGAC 57.187 45.455 5.05 0.00 0.00 4.79
58 59 4.451900 CAATTAGTGGAATAAGCCGGACT 58.548 43.478 5.05 0.00 0.00 3.85
59 60 3.814005 TTAGTGGAATAAGCCGGACTC 57.186 47.619 5.05 0.00 0.00 3.36
60 61 0.460311 AGTGGAATAAGCCGGACTCG 59.540 55.000 5.05 0.00 0.00 4.18
61 62 0.175073 GTGGAATAAGCCGGACTCGT 59.825 55.000 5.05 0.00 33.95 4.18
62 63 0.174845 TGGAATAAGCCGGACTCGTG 59.825 55.000 5.05 0.00 33.95 4.35
63 64 0.175073 GGAATAAGCCGGACTCGTGT 59.825 55.000 5.05 0.00 33.95 4.49
64 65 1.557651 GAATAAGCCGGACTCGTGTC 58.442 55.000 5.05 9.11 42.22 3.67
65 66 0.179145 AATAAGCCGGACTCGTGTCG 60.179 55.000 5.05 6.94 43.79 4.35
66 67 1.310933 ATAAGCCGGACTCGTGTCGT 61.311 55.000 5.05 0.00 43.79 4.34
67 68 2.191354 TAAGCCGGACTCGTGTCGTG 62.191 60.000 5.05 6.54 43.79 4.35
68 69 4.034258 GCCGGACTCGTGTCGTGA 62.034 66.667 5.05 0.00 43.79 4.35
69 70 2.640989 CCGGACTCGTGTCGTGAA 59.359 61.111 11.19 0.00 43.79 3.18
70 71 1.211969 CCGGACTCGTGTCGTGAAT 59.788 57.895 11.19 0.00 43.79 2.57
71 72 0.448990 CCGGACTCGTGTCGTGAATA 59.551 55.000 11.19 0.00 43.79 1.75
72 73 1.065102 CCGGACTCGTGTCGTGAATAT 59.935 52.381 11.19 0.00 43.79 1.28
73 74 2.109463 CGGACTCGTGTCGTGAATATG 58.891 52.381 11.19 0.00 43.79 1.78
74 75 1.852895 GGACTCGTGTCGTGAATATGC 59.147 52.381 11.19 0.00 43.79 3.14
75 76 1.852895 GACTCGTGTCGTGAATATGCC 59.147 52.381 1.31 0.00 33.15 4.40
76 77 1.203758 ACTCGTGTCGTGAATATGCCA 59.796 47.619 0.00 0.00 0.00 4.92
77 78 2.159099 ACTCGTGTCGTGAATATGCCAT 60.159 45.455 0.00 0.00 0.00 4.40
78 79 2.866156 CTCGTGTCGTGAATATGCCATT 59.134 45.455 0.00 0.00 0.00 3.16
79 80 2.863740 TCGTGTCGTGAATATGCCATTC 59.136 45.455 2.04 2.04 0.00 2.67
80 81 2.866156 CGTGTCGTGAATATGCCATTCT 59.134 45.455 8.96 0.00 0.00 2.40
81 82 3.060272 CGTGTCGTGAATATGCCATTCTC 60.060 47.826 8.96 5.35 0.00 2.87
82 83 4.122776 GTGTCGTGAATATGCCATTCTCT 58.877 43.478 8.96 0.00 0.00 3.10
83 84 4.025396 GTGTCGTGAATATGCCATTCTCTG 60.025 45.833 8.96 4.03 0.00 3.35
84 85 4.122776 GTCGTGAATATGCCATTCTCTGT 58.877 43.478 8.96 0.00 0.00 3.41
85 86 4.025396 GTCGTGAATATGCCATTCTCTGTG 60.025 45.833 8.96 0.00 0.00 3.66
86 87 3.873361 CGTGAATATGCCATTCTCTGTGT 59.127 43.478 8.96 0.00 0.00 3.72
87 88 4.333649 CGTGAATATGCCATTCTCTGTGTT 59.666 41.667 8.96 0.00 0.00 3.32
88 89 5.575957 GTGAATATGCCATTCTCTGTGTTG 58.424 41.667 8.96 0.00 0.00 3.33
89 90 5.124457 GTGAATATGCCATTCTCTGTGTTGT 59.876 40.000 8.96 0.00 0.00 3.32
90 91 5.711506 TGAATATGCCATTCTCTGTGTTGTT 59.288 36.000 8.96 0.00 0.00 2.83
91 92 5.824904 ATATGCCATTCTCTGTGTTGTTC 57.175 39.130 0.00 0.00 0.00 3.18
92 93 2.229792 TGCCATTCTCTGTGTTGTTCC 58.770 47.619 0.00 0.00 0.00 3.62
93 94 2.229792 GCCATTCTCTGTGTTGTTCCA 58.770 47.619 0.00 0.00 0.00 3.53
94 95 2.622942 GCCATTCTCTGTGTTGTTCCAA 59.377 45.455 0.00 0.00 0.00 3.53
95 96 3.068024 GCCATTCTCTGTGTTGTTCCAAA 59.932 43.478 0.00 0.00 0.00 3.28
96 97 4.441356 GCCATTCTCTGTGTTGTTCCAAAA 60.441 41.667 0.00 0.00 0.00 2.44
97 98 5.284079 CCATTCTCTGTGTTGTTCCAAAAG 58.716 41.667 0.00 0.00 0.00 2.27
98 99 5.067674 CCATTCTCTGTGTTGTTCCAAAAGA 59.932 40.000 0.00 0.00 0.00 2.52
99 100 6.405731 CCATTCTCTGTGTTGTTCCAAAAGAA 60.406 38.462 0.00 0.00 0.00 2.52
100 101 6.582677 TTCTCTGTGTTGTTCCAAAAGAAA 57.417 33.333 0.00 0.00 35.85 2.52
101 102 6.582677 TCTCTGTGTTGTTCCAAAAGAAAA 57.417 33.333 0.00 0.00 35.85 2.29
102 103 6.620678 TCTCTGTGTTGTTCCAAAAGAAAAG 58.379 36.000 0.00 0.00 35.85 2.27
103 104 6.208599 TCTCTGTGTTGTTCCAAAAGAAAAGT 59.791 34.615 0.00 0.00 35.85 2.66
104 105 6.754193 TCTGTGTTGTTCCAAAAGAAAAGTT 58.246 32.000 0.00 0.00 35.85 2.66
105 106 7.213678 TCTGTGTTGTTCCAAAAGAAAAGTTT 58.786 30.769 0.00 0.00 35.85 2.66
106 107 7.170658 TCTGTGTTGTTCCAAAAGAAAAGTTTG 59.829 33.333 0.00 0.00 35.85 2.93
107 108 6.763610 TGTGTTGTTCCAAAAGAAAAGTTTGT 59.236 30.769 0.00 0.00 35.85 2.83
108 109 7.926555 TGTGTTGTTCCAAAAGAAAAGTTTGTA 59.073 29.630 0.00 0.00 35.85 2.41
109 110 8.218441 GTGTTGTTCCAAAAGAAAAGTTTGTAC 58.782 33.333 0.00 0.00 35.85 2.90
110 111 7.926555 TGTTGTTCCAAAAGAAAAGTTTGTACA 59.073 29.630 0.00 0.00 35.85 2.90
111 112 8.766151 GTTGTTCCAAAAGAAAAGTTTGTACAA 58.234 29.630 3.59 3.59 36.86 2.41
112 113 8.888579 TGTTCCAAAAGAAAAGTTTGTACAAA 57.111 26.923 17.01 17.01 35.85 2.83
113 114 8.983724 TGTTCCAAAAGAAAAGTTTGTACAAAG 58.016 29.630 21.12 5.70 35.85 2.77
114 115 7.589574 TCCAAAAGAAAAGTTTGTACAAAGC 57.410 32.000 21.12 15.12 34.75 3.51
115 116 7.382898 TCCAAAAGAAAAGTTTGTACAAAGCT 58.617 30.769 21.12 16.91 34.75 3.74
116 117 8.524487 TCCAAAAGAAAAGTTTGTACAAAGCTA 58.476 29.630 21.12 0.00 34.75 3.32
117 118 9.145865 CCAAAAGAAAAGTTTGTACAAAGCTAA 57.854 29.630 21.12 0.00 34.75 3.09
121 122 8.697846 AGAAAAGTTTGTACAAAGCTAAAACC 57.302 30.769 21.12 7.19 32.42 3.27
122 123 8.528643 AGAAAAGTTTGTACAAAGCTAAAACCT 58.471 29.630 21.12 9.32 32.42 3.50
123 124 8.474006 AAAAGTTTGTACAAAGCTAAAACCTG 57.526 30.769 21.12 0.00 32.42 4.00
124 125 6.769134 AGTTTGTACAAAGCTAAAACCTGT 57.231 33.333 21.12 0.00 32.42 4.00
125 126 7.165460 AGTTTGTACAAAGCTAAAACCTGTT 57.835 32.000 21.12 0.00 32.42 3.16
126 127 7.608153 AGTTTGTACAAAGCTAAAACCTGTTT 58.392 30.769 21.12 0.00 32.42 2.83
127 128 8.092068 AGTTTGTACAAAGCTAAAACCTGTTTT 58.908 29.630 21.12 12.20 44.16 2.43
128 129 8.714179 GTTTGTACAAAGCTAAAACCTGTTTTT 58.286 29.630 21.12 0.00 42.22 1.94
129 130 9.924650 TTTGTACAAAGCTAAAACCTGTTTTTA 57.075 25.926 17.01 0.00 42.22 1.52
130 131 8.914328 TGTACAAAGCTAAAACCTGTTTTTAC 57.086 30.769 12.73 8.27 42.22 2.01
131 132 8.521176 TGTACAAAGCTAAAACCTGTTTTTACA 58.479 29.630 12.73 10.32 42.22 2.41
132 133 9.356433 GTACAAAGCTAAAACCTGTTTTTACAA 57.644 29.630 12.73 0.00 42.22 2.41
133 134 8.246908 ACAAAGCTAAAACCTGTTTTTACAAC 57.753 30.769 12.73 0.68 42.22 3.32
134 135 7.873505 ACAAAGCTAAAACCTGTTTTTACAACA 59.126 29.630 12.73 0.00 42.22 3.33
135 136 8.713271 CAAAGCTAAAACCTGTTTTTACAACAA 58.287 29.630 12.73 0.00 42.22 2.83
136 137 7.821595 AGCTAAAACCTGTTTTTACAACAAC 57.178 32.000 12.73 0.00 42.22 3.32
137 138 7.379750 AGCTAAAACCTGTTTTTACAACAACA 58.620 30.769 12.73 0.00 42.22 3.33
138 139 7.873505 AGCTAAAACCTGTTTTTACAACAACAA 59.126 29.630 12.73 0.00 42.22 2.83
139 140 8.496751 GCTAAAACCTGTTTTTACAACAACAAA 58.503 29.630 12.73 0.00 42.22 2.83
162 163 5.665916 AAAAATCATGGTTCTTAGGGCTG 57.334 39.130 0.00 0.00 0.00 4.85
163 164 3.303351 AATCATGGTTCTTAGGGCTGG 57.697 47.619 0.00 0.00 0.00 4.85
164 165 1.965414 TCATGGTTCTTAGGGCTGGA 58.035 50.000 0.00 0.00 0.00 3.86
165 166 2.274542 TCATGGTTCTTAGGGCTGGAA 58.725 47.619 0.00 0.00 0.00 3.53
166 167 2.852449 TCATGGTTCTTAGGGCTGGAAT 59.148 45.455 0.00 0.00 0.00 3.01
167 168 3.269381 TCATGGTTCTTAGGGCTGGAATT 59.731 43.478 0.00 0.00 0.00 2.17
168 169 3.366052 TGGTTCTTAGGGCTGGAATTC 57.634 47.619 0.00 0.00 0.00 2.17
169 170 2.647299 TGGTTCTTAGGGCTGGAATTCA 59.353 45.455 7.93 0.00 0.00 2.57
170 171 3.075283 TGGTTCTTAGGGCTGGAATTCAA 59.925 43.478 7.93 0.00 0.00 2.69
171 172 3.696548 GGTTCTTAGGGCTGGAATTCAAG 59.303 47.826 5.38 5.38 0.00 3.02
172 173 3.004752 TCTTAGGGCTGGAATTCAAGC 57.995 47.619 24.41 24.41 0.00 4.01
173 174 2.027385 CTTAGGGCTGGAATTCAAGCC 58.973 52.381 36.87 36.87 45.99 4.35
175 176 4.319133 GGCTGGAATTCAAGCCGA 57.681 55.556 33.15 0.00 37.71 5.54
176 177 2.101700 GGCTGGAATTCAAGCCGAG 58.898 57.895 33.15 8.41 37.71 4.63
177 178 0.392998 GGCTGGAATTCAAGCCGAGA 60.393 55.000 33.15 0.00 37.71 4.04
178 179 0.729690 GCTGGAATTCAAGCCGAGAC 59.270 55.000 22.38 0.00 0.00 3.36
179 180 1.002366 CTGGAATTCAAGCCGAGACG 58.998 55.000 7.93 0.00 0.00 4.18
191 192 2.569134 GAGACGGCTTGACTCGCT 59.431 61.111 0.00 0.00 30.03 4.93
192 193 1.801332 GAGACGGCTTGACTCGCTA 59.199 57.895 0.00 0.00 30.03 4.26
193 194 0.248296 GAGACGGCTTGACTCGCTAG 60.248 60.000 0.00 0.00 30.03 3.42
194 195 0.677098 AGACGGCTTGACTCGCTAGA 60.677 55.000 0.00 0.00 0.00 2.43
195 196 0.170561 GACGGCTTGACTCGCTAGAA 59.829 55.000 0.00 0.00 0.00 2.10
196 197 0.109226 ACGGCTTGACTCGCTAGAAC 60.109 55.000 0.00 0.00 0.00 3.01
197 198 0.171455 CGGCTTGACTCGCTAGAACT 59.829 55.000 0.00 0.00 0.00 3.01
198 199 1.795889 CGGCTTGACTCGCTAGAACTC 60.796 57.143 0.00 0.00 0.00 3.01
199 200 1.202582 GGCTTGACTCGCTAGAACTCA 59.797 52.381 0.00 0.00 0.00 3.41
200 201 2.525055 GCTTGACTCGCTAGAACTCAG 58.475 52.381 0.00 0.00 0.00 3.35
201 202 2.094957 GCTTGACTCGCTAGAACTCAGT 60.095 50.000 0.00 0.00 0.00 3.41
202 203 3.127203 GCTTGACTCGCTAGAACTCAGTA 59.873 47.826 0.00 0.00 0.00 2.74
203 204 4.379603 GCTTGACTCGCTAGAACTCAGTAA 60.380 45.833 0.00 0.00 0.00 2.24
204 205 4.948608 TGACTCGCTAGAACTCAGTAAG 57.051 45.455 0.00 0.00 0.00 2.34
205 206 4.576879 TGACTCGCTAGAACTCAGTAAGA 58.423 43.478 0.00 0.00 0.00 2.10
206 207 4.392445 TGACTCGCTAGAACTCAGTAAGAC 59.608 45.833 0.00 0.00 0.00 3.01
207 208 4.325119 ACTCGCTAGAACTCAGTAAGACA 58.675 43.478 0.00 0.00 0.00 3.41
208 209 4.760715 ACTCGCTAGAACTCAGTAAGACAA 59.239 41.667 0.00 0.00 0.00 3.18
209 210 5.044428 TCGCTAGAACTCAGTAAGACAAC 57.956 43.478 0.00 0.00 0.00 3.32
210 211 4.517832 TCGCTAGAACTCAGTAAGACAACA 59.482 41.667 0.00 0.00 0.00 3.33
211 212 5.009310 TCGCTAGAACTCAGTAAGACAACAA 59.991 40.000 0.00 0.00 0.00 2.83
212 213 5.343593 CGCTAGAACTCAGTAAGACAACAAG 59.656 44.000 0.00 0.00 0.00 3.16
213 214 6.217294 GCTAGAACTCAGTAAGACAACAAGT 58.783 40.000 0.00 0.00 0.00 3.16
253 254 4.447724 GTGAACATAACGAGCTCAAACTCA 59.552 41.667 15.40 3.83 36.42 3.41
263 264 1.612156 CTCAAACTCAGCTCGACTCG 58.388 55.000 0.00 0.00 0.00 4.18
292 293 3.857638 GAGCTAGCTCGCCTAACTC 57.142 57.895 28.04 3.98 33.47 3.01
310 311 9.911980 GCCTAACTCGTTAAACTCATTATAAAC 57.088 33.333 0.00 0.00 0.00 2.01
394 395 9.716507 ATTAATACACGCATATTCTTCACAAAC 57.283 29.630 0.00 0.00 0.00 2.93
396 397 3.818210 ACACGCATATTCTTCACAAACCA 59.182 39.130 0.00 0.00 0.00 3.67
397 398 4.158384 CACGCATATTCTTCACAAACCAC 58.842 43.478 0.00 0.00 0.00 4.16
398 399 3.818210 ACGCATATTCTTCACAAACCACA 59.182 39.130 0.00 0.00 0.00 4.17
400 401 4.616802 CGCATATTCTTCACAAACCACAAC 59.383 41.667 0.00 0.00 0.00 3.32
401 402 4.616802 GCATATTCTTCACAAACCACAACG 59.383 41.667 0.00 0.00 0.00 4.10
403 404 6.611381 CATATTCTTCACAAACCACAACGAT 58.389 36.000 0.00 0.00 0.00 3.73
404 405 4.545823 TTCTTCACAAACCACAACGATC 57.454 40.909 0.00 0.00 0.00 3.69
405 406 3.536570 TCTTCACAAACCACAACGATCA 58.463 40.909 0.00 0.00 0.00 2.92
407 408 3.684103 TCACAAACCACAACGATCAAC 57.316 42.857 0.00 0.00 0.00 3.18
451 453 3.563808 TGGTGCACTCTACAAATGACAAC 59.436 43.478 17.98 0.00 0.00 3.32
453 455 4.036262 GGTGCACTCTACAAATGACAACAA 59.964 41.667 17.98 0.00 0.00 2.83
454 456 5.278463 GGTGCACTCTACAAATGACAACAAT 60.278 40.000 17.98 0.00 0.00 2.71
455 457 6.072728 GGTGCACTCTACAAATGACAACAATA 60.073 38.462 17.98 0.00 0.00 1.90
456 458 7.017645 GTGCACTCTACAAATGACAACAATAG 58.982 38.462 10.32 0.00 0.00 1.73
458 460 7.017645 GCACTCTACAAATGACAACAATAGTG 58.982 38.462 0.00 0.00 34.14 2.74
459 461 7.095229 GCACTCTACAAATGACAACAATAGTGA 60.095 37.037 0.00 0.00 33.09 3.41
460 462 8.939929 CACTCTACAAATGACAACAATAGTGAT 58.060 33.333 0.00 0.00 33.09 3.06
476 478 8.643324 ACAATAGTGATACTTATCTCTTGTCCC 58.357 37.037 0.00 0.00 37.60 4.46
477 479 8.865090 CAATAGTGATACTTATCTCTTGTCCCT 58.135 37.037 6.23 0.00 37.60 4.20
478 480 9.440761 AATAGTGATACTTATCTCTTGTCCCTT 57.559 33.333 6.23 0.00 37.60 3.95
479 481 7.741554 AGTGATACTTATCTCTTGTCCCTTT 57.258 36.000 0.00 0.00 34.02 3.11
480 482 8.152023 AGTGATACTTATCTCTTGTCCCTTTT 57.848 34.615 0.00 0.00 34.02 2.27
481 483 8.606830 AGTGATACTTATCTCTTGTCCCTTTTT 58.393 33.333 0.00 0.00 34.02 1.94
482 484 9.886132 GTGATACTTATCTCTTGTCCCTTTTTA 57.114 33.333 0.00 0.00 33.88 1.52
489 491 9.947433 TTATCTCTTGTCCCTTTTTATTTACGA 57.053 29.630 0.00 0.00 0.00 3.43
490 492 7.900782 TCTCTTGTCCCTTTTTATTTACGAG 57.099 36.000 0.00 0.00 0.00 4.18
491 493 6.877322 TCTCTTGTCCCTTTTTATTTACGAGG 59.123 38.462 0.00 0.00 0.00 4.63
492 494 6.536447 TCTTGTCCCTTTTTATTTACGAGGT 58.464 36.000 0.00 0.00 0.00 3.85
493 495 7.678837 TCTTGTCCCTTTTTATTTACGAGGTA 58.321 34.615 0.00 0.00 0.00 3.08
494 496 8.156165 TCTTGTCCCTTTTTATTTACGAGGTAA 58.844 33.333 0.00 0.00 0.00 2.85
495 497 8.688747 TTGTCCCTTTTTATTTACGAGGTAAA 57.311 30.769 3.69 3.69 41.32 2.01
496 498 8.866970 TGTCCCTTTTTATTTACGAGGTAAAT 57.133 30.769 15.58 15.58 46.31 1.40
497 499 8.732531 TGTCCCTTTTTATTTACGAGGTAAATG 58.267 33.333 18.95 6.37 44.90 2.32
498 500 8.949177 GTCCCTTTTTATTTACGAGGTAAATGA 58.051 33.333 18.95 11.23 44.90 2.57
499 501 9.689501 TCCCTTTTTATTTACGAGGTAAATGAT 57.310 29.630 18.95 2.30 44.90 2.45
524 526 1.128136 TCGTTAGCTCGAGTCGTTGAG 59.872 52.381 15.13 3.78 37.27 3.02
562 564 7.732222 ATTAATAAGCTTGGATCAAAACCCA 57.268 32.000 9.86 0.00 0.00 4.51
572 574 2.940994 TCAAAACCCAGGTCGATTCA 57.059 45.000 0.00 0.00 0.00 2.57
651 653 7.740519 AATGAGTTTCTTGTTTTCGTTTCAG 57.259 32.000 0.00 0.00 0.00 3.02
657 659 0.464013 TGTTTTCGTTTCAGCCCCGA 60.464 50.000 0.00 0.00 0.00 5.14
771 786 1.134220 TGACAGTCCTTGGTGTTGGTC 60.134 52.381 0.00 0.00 0.00 4.02
772 787 0.916086 ACAGTCCTTGGTGTTGGTCA 59.084 50.000 0.00 0.00 0.00 4.02
777 792 3.117512 AGTCCTTGGTGTTGGTCAAGATT 60.118 43.478 4.83 0.00 41.94 2.40
787 802 8.573035 TGGTGTTGGTCAAGATTTAACTAATTC 58.427 33.333 0.00 0.00 0.00 2.17
798 813 5.997732 TTTAACTAATTCTTCGGTCGACG 57.002 39.130 9.92 5.26 46.11 5.12
825 840 9.353999 GAGAATTAGCAAAACCGAATAAAACAT 57.646 29.630 0.00 0.00 0.00 2.71
831 846 5.460419 GCAAAACCGAATAAAACATGTGTGA 59.540 36.000 0.00 0.00 0.00 3.58
854 869 2.785713 TTTTGCGGCCTTGTCTTAAC 57.214 45.000 0.00 0.00 0.00 2.01
856 871 0.249953 TTGCGGCCTTGTCTTAACGA 60.250 50.000 0.00 0.00 0.00 3.85
858 873 0.869730 GCGGCCTTGTCTTAACGAAA 59.130 50.000 0.00 0.00 0.00 3.46
859 874 1.467342 GCGGCCTTGTCTTAACGAAAT 59.533 47.619 0.00 0.00 0.00 2.17
860 875 2.727916 GCGGCCTTGTCTTAACGAAATG 60.728 50.000 0.00 0.00 0.00 2.32
861 876 2.159572 CGGCCTTGTCTTAACGAAATGG 60.160 50.000 0.00 0.00 0.00 3.16
862 877 3.078837 GGCCTTGTCTTAACGAAATGGA 58.921 45.455 0.00 0.00 0.00 3.41
863 878 3.504520 GGCCTTGTCTTAACGAAATGGAA 59.495 43.478 0.00 0.00 0.00 3.53
864 879 4.157840 GGCCTTGTCTTAACGAAATGGAAT 59.842 41.667 0.00 0.00 0.00 3.01
865 880 5.332707 GCCTTGTCTTAACGAAATGGAATC 58.667 41.667 0.00 0.00 0.00 2.52
866 881 5.560148 CCTTGTCTTAACGAAATGGAATCG 58.440 41.667 0.00 0.00 45.47 3.34
867 882 5.447279 CCTTGTCTTAACGAAATGGAATCGG 60.447 44.000 0.00 0.00 44.32 4.18
868 883 3.936453 TGTCTTAACGAAATGGAATCGGG 59.064 43.478 0.00 0.00 44.32 5.14
869 884 3.311596 GTCTTAACGAAATGGAATCGGGG 59.688 47.826 0.00 0.00 44.32 5.73
870 885 3.054948 TCTTAACGAAATGGAATCGGGGT 60.055 43.478 0.00 0.00 44.32 4.95
871 886 4.161942 TCTTAACGAAATGGAATCGGGGTA 59.838 41.667 0.00 0.00 44.32 3.69
874 889 3.688235 ACGAAATGGAATCGGGGTAAAA 58.312 40.909 0.00 0.00 44.32 1.52
887 902 5.677567 TCGGGGTAAAAGGAGTAAATCATC 58.322 41.667 0.00 0.00 0.00 2.92
894 909 8.610035 GGTAAAAGGAGTAAATCATCGGTAAAG 58.390 37.037 0.00 0.00 0.00 1.85
895 910 7.625828 AAAAGGAGTAAATCATCGGTAAAGG 57.374 36.000 0.00 0.00 0.00 3.11
918 935 7.768240 AGGTCTTGTCTTAACGAAACAAAATT 58.232 30.769 0.00 0.00 32.89 1.82
926 943 9.887406 GTCTTAACGAAACAAAATTTCCAGATA 57.113 29.630 0.00 0.00 0.00 1.98
966 983 1.067250 GTGTGCACACGGCCAATTT 59.933 52.632 32.41 0.00 43.89 1.82
967 984 0.312416 GTGTGCACACGGCCAATTTA 59.688 50.000 32.41 0.00 43.89 1.40
968 985 0.595588 TGTGCACACGGCCAATTTAG 59.404 50.000 17.42 0.00 43.89 1.85
969 986 0.596082 GTGCACACGGCCAATTTAGT 59.404 50.000 13.17 0.00 43.89 2.24
970 987 0.595588 TGCACACGGCCAATTTAGTG 59.404 50.000 2.24 3.82 43.89 2.74
992 1009 2.559123 GGTGACGCGTACACGATAC 58.441 57.895 24.91 8.02 43.02 2.24
993 1010 1.189989 GGTGACGCGTACACGATACG 61.190 60.000 24.91 16.22 43.02 3.06
998 1015 4.684265 CGTACACGATACGCTGCT 57.316 55.556 10.21 0.00 43.02 4.24
999 1016 2.195615 CGTACACGATACGCTGCTG 58.804 57.895 10.21 0.00 43.02 4.41
1000 1017 0.247934 CGTACACGATACGCTGCTGA 60.248 55.000 10.21 0.00 43.02 4.26
1001 1018 1.597199 CGTACACGATACGCTGCTGAT 60.597 52.381 10.21 0.00 43.02 2.90
1002 1019 1.781429 GTACACGATACGCTGCTGATG 59.219 52.381 0.00 0.00 0.00 3.07
1003 1020 1.148157 ACACGATACGCTGCTGATGC 61.148 55.000 0.00 0.00 40.20 3.91
1106 1129 2.492090 GTGGCACGCACAAACCAA 59.508 55.556 0.00 0.00 39.55 3.67
1107 1130 1.153745 GTGGCACGCACAAACCAAA 60.154 52.632 0.00 0.00 39.55 3.28
1108 1131 1.153745 TGGCACGCACAAACCAAAC 60.154 52.632 0.00 0.00 0.00 2.93
1109 1132 1.880796 GGCACGCACAAACCAAACC 60.881 57.895 0.00 0.00 0.00 3.27
1110 1133 1.153745 GCACGCACAAACCAAACCA 60.154 52.632 0.00 0.00 0.00 3.67
1116 1139 2.267426 GCACAAACCAAACCAGTGAAC 58.733 47.619 0.00 0.00 32.14 3.18
1126 1149 2.364972 ACCAGTGAACCAAAAGGAGG 57.635 50.000 0.00 0.00 0.00 4.30
1131 1159 0.850100 TGAACCAAAAGGAGGAGGCA 59.150 50.000 0.00 0.00 0.00 4.75
1132 1160 1.216678 TGAACCAAAAGGAGGAGGCAA 59.783 47.619 0.00 0.00 0.00 4.52
1154 1215 4.796231 GATCACTCCACGGCGCGT 62.796 66.667 6.90 0.00 42.36 6.01
1320 1414 2.615493 GGTCATCAACCTGTCATCCGTT 60.615 50.000 0.00 0.00 45.45 4.44
1650 1783 4.883300 CCGGAGTACGCGCGTCTC 62.883 72.222 41.35 36.71 42.52 3.36
2278 2450 3.374402 CTCTGCACCGTCCTCCGT 61.374 66.667 0.00 0.00 33.66 4.69
2299 2471 4.142315 CGTCCATGCCTTCTGAATTTTGAT 60.142 41.667 0.00 0.00 0.00 2.57
2340 2512 7.801716 AATAGTAACAAGTTGAGTGCTTCAA 57.198 32.000 10.54 0.87 43.40 2.69
2341 2513 7.801716 ATAGTAACAAGTTGAGTGCTTCAAA 57.198 32.000 10.54 0.00 46.85 2.69
2342 2514 6.509418 AGTAACAAGTTGAGTGCTTCAAAA 57.491 33.333 10.54 0.00 46.85 2.44
2343 2515 7.100458 AGTAACAAGTTGAGTGCTTCAAAAT 57.900 32.000 10.54 0.00 46.85 1.82
2344 2516 7.196331 AGTAACAAGTTGAGTGCTTCAAAATC 58.804 34.615 10.54 0.00 46.85 2.17
2347 2519 6.397272 ACAAGTTGAGTGCTTCAAAATCAAA 58.603 32.000 10.54 0.00 46.85 2.69
2348 2520 6.873076 ACAAGTTGAGTGCTTCAAAATCAAAA 59.127 30.769 10.54 0.00 46.85 2.44
2349 2521 7.550196 ACAAGTTGAGTGCTTCAAAATCAAAAT 59.450 29.630 10.54 0.00 46.85 1.82
2396 2599 0.813210 GATCGGCCAGAAAGAGCAGG 60.813 60.000 2.24 0.00 0.00 4.85
2421 2624 6.202570 GGCAAAAGTAACAAGCATGAATTCAA 59.797 34.615 13.09 0.00 0.00 2.69
2497 2700 2.251600 CAGCCACACTGCCTTTCTC 58.748 57.895 0.00 0.00 40.19 2.87
2498 2701 1.073897 AGCCACACTGCCTTTCTCC 59.926 57.895 0.00 0.00 0.00 3.71
2531 2739 0.451135 CTTTCGGCGAAAGTTGAGCG 60.451 55.000 40.00 22.78 42.61 5.03
2567 2775 0.326264 ACCCTGTCTGATGAGCAACC 59.674 55.000 0.00 0.00 0.00 3.77
2598 2806 7.473735 TGATTACACACTGAGAGAGATTCTT 57.526 36.000 0.00 0.00 35.87 2.52
2599 2807 7.901029 TGATTACACACTGAGAGAGATTCTTT 58.099 34.615 0.00 0.00 35.87 2.52
2600 2808 9.025041 TGATTACACACTGAGAGAGATTCTTTA 57.975 33.333 0.00 0.00 35.87 1.85
2636 2844 2.354305 GGACCGCGCGTCGAATAT 60.354 61.111 29.95 4.37 42.99 1.28
2637 2845 1.081906 GGACCGCGCGTCGAATATA 60.082 57.895 29.95 0.00 42.99 0.86
2700 2908 3.751518 AGGGTTATCGAAGTGTGCTTTT 58.248 40.909 0.00 0.00 34.61 2.27
2730 2938 6.457934 GCCGATGTTGATCCATGATGAATATC 60.458 42.308 0.00 3.96 33.31 1.63
2837 3056 3.679502 CCGGTCAAATTTTGGCTGAAATC 59.320 43.478 21.32 0.56 44.32 2.17
2843 3062 2.810439 TTTTGGCTGAAATCCAACCG 57.190 45.000 0.00 0.00 42.75 4.44
2854 3073 3.575965 AATCCAACCGCATTTTGAGTC 57.424 42.857 0.00 0.00 0.00 3.36
2889 3108 2.406616 CGAATCCAGGGTTTGCCGG 61.407 63.158 0.00 0.00 34.97 6.13
2972 3191 2.798499 CGATGAACAGTCCACCGGTATC 60.798 54.545 6.87 1.98 0.00 2.24
3035 3254 3.211045 CTTTCGGAGACCAAGGAAACAA 58.789 45.455 0.00 0.00 34.32 2.83
3068 3287 0.955905 AAAACGGCGGCAAGTAACAT 59.044 45.000 13.24 0.00 0.00 2.71
3196 3415 4.553323 CAACAAATTTCCTTGCTCCTCTG 58.447 43.478 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.569127 TGGTGTAAAGCTTATGGGATCTAA 57.431 37.500 0.00 0.00 0.00 2.10
1 2 6.763715 ATGGTGTAAAGCTTATGGGATCTA 57.236 37.500 0.00 0.00 0.00 1.98
3 4 7.665559 TCAATATGGTGTAAAGCTTATGGGATC 59.334 37.037 0.00 0.00 0.00 3.36
4 5 7.526041 TCAATATGGTGTAAAGCTTATGGGAT 58.474 34.615 0.00 0.00 0.00 3.85
5 6 6.905736 TCAATATGGTGTAAAGCTTATGGGA 58.094 36.000 0.00 0.00 0.00 4.37
6 7 7.581213 TTCAATATGGTGTAAAGCTTATGGG 57.419 36.000 0.00 0.00 0.00 4.00
10 11 8.691797 GGGAATTTCAATATGGTGTAAAGCTTA 58.308 33.333 0.00 0.00 0.00 3.09
11 12 7.180051 TGGGAATTTCAATATGGTGTAAAGCTT 59.820 33.333 0.00 0.00 0.00 3.74
12 13 6.667414 TGGGAATTTCAATATGGTGTAAAGCT 59.333 34.615 0.00 0.00 0.00 3.74
13 14 6.872920 TGGGAATTTCAATATGGTGTAAAGC 58.127 36.000 0.00 0.00 0.00 3.51
14 15 9.889128 AATTGGGAATTTCAATATGGTGTAAAG 57.111 29.630 7.94 0.00 34.15 1.85
17 18 9.707957 ACTAATTGGGAATTTCAATATGGTGTA 57.292 29.630 7.94 0.00 34.15 2.90
18 19 8.477256 CACTAATTGGGAATTTCAATATGGTGT 58.523 33.333 7.94 2.87 34.15 4.16
19 20 7.927629 CCACTAATTGGGAATTTCAATATGGTG 59.072 37.037 15.71 16.16 42.54 4.17
20 21 7.843760 TCCACTAATTGGGAATTTCAATATGGT 59.156 33.333 19.10 12.19 46.92 3.55
21 22 8.248904 TCCACTAATTGGGAATTTCAATATGG 57.751 34.615 16.70 16.70 46.92 2.74
32 33 4.204012 CGGCTTATTCCACTAATTGGGAA 58.796 43.478 9.58 9.58 46.92 3.97
33 34 3.434453 CCGGCTTATTCCACTAATTGGGA 60.434 47.826 0.00 0.00 46.92 4.37
34 35 2.884639 CCGGCTTATTCCACTAATTGGG 59.115 50.000 0.00 0.00 46.92 4.12
36 37 4.451900 AGTCCGGCTTATTCCACTAATTG 58.548 43.478 0.00 0.00 0.00 2.32
37 38 4.704965 GAGTCCGGCTTATTCCACTAATT 58.295 43.478 0.00 0.00 0.00 1.40
38 39 3.243771 CGAGTCCGGCTTATTCCACTAAT 60.244 47.826 0.00 0.00 0.00 1.73
39 40 2.100252 CGAGTCCGGCTTATTCCACTAA 59.900 50.000 0.00 0.00 0.00 2.24
40 41 1.679680 CGAGTCCGGCTTATTCCACTA 59.320 52.381 0.00 0.00 0.00 2.74
41 42 0.460311 CGAGTCCGGCTTATTCCACT 59.540 55.000 0.00 0.00 0.00 4.00
42 43 0.175073 ACGAGTCCGGCTTATTCCAC 59.825 55.000 0.00 0.00 40.78 4.02
43 44 0.174845 CACGAGTCCGGCTTATTCCA 59.825 55.000 0.00 0.00 40.78 3.53
44 45 0.175073 ACACGAGTCCGGCTTATTCC 59.825 55.000 0.00 0.00 40.78 3.01
45 46 1.557651 GACACGAGTCCGGCTTATTC 58.442 55.000 0.00 0.00 38.89 1.75
46 47 0.179145 CGACACGAGTCCGGCTTATT 60.179 55.000 7.43 0.00 41.87 1.40
47 48 1.310933 ACGACACGAGTCCGGCTTAT 61.311 55.000 7.43 0.00 41.87 1.73
48 49 1.968017 ACGACACGAGTCCGGCTTA 60.968 57.895 7.43 0.00 41.87 3.09
49 50 3.292936 ACGACACGAGTCCGGCTT 61.293 61.111 7.43 0.00 41.87 4.35
50 51 4.039357 CACGACACGAGTCCGGCT 62.039 66.667 7.43 0.00 41.87 5.52
51 52 2.814183 ATTCACGACACGAGTCCGGC 62.814 60.000 7.43 0.00 41.87 6.13
52 53 0.448990 TATTCACGACACGAGTCCGG 59.551 55.000 7.43 0.00 41.87 5.14
53 54 2.109463 CATATTCACGACACGAGTCCG 58.891 52.381 7.43 5.50 41.87 4.79
54 55 1.852895 GCATATTCACGACACGAGTCC 59.147 52.381 7.43 0.00 41.87 3.85
55 56 1.852895 GGCATATTCACGACACGAGTC 59.147 52.381 2.56 2.56 41.46 3.36
56 57 1.203758 TGGCATATTCACGACACGAGT 59.796 47.619 0.00 0.00 0.00 4.18
57 58 1.921243 TGGCATATTCACGACACGAG 58.079 50.000 0.00 0.00 0.00 4.18
58 59 2.595124 ATGGCATATTCACGACACGA 57.405 45.000 0.00 0.00 0.00 4.35
59 60 2.866156 AGAATGGCATATTCACGACACG 59.134 45.455 0.00 0.00 0.00 4.49
60 61 4.025396 CAGAGAATGGCATATTCACGACAC 60.025 45.833 0.00 1.49 0.00 3.67
61 62 4.122046 CAGAGAATGGCATATTCACGACA 58.878 43.478 0.00 0.00 0.00 4.35
62 63 4.025396 CACAGAGAATGGCATATTCACGAC 60.025 45.833 0.00 4.53 0.00 4.34
63 64 4.122046 CACAGAGAATGGCATATTCACGA 58.878 43.478 0.00 0.00 0.00 4.35
64 65 3.873361 ACACAGAGAATGGCATATTCACG 59.127 43.478 0.00 0.32 0.00 4.35
65 66 5.124457 ACAACACAGAGAATGGCATATTCAC 59.876 40.000 0.00 8.38 0.00 3.18
66 67 5.255687 ACAACACAGAGAATGGCATATTCA 58.744 37.500 0.00 0.00 0.00 2.57
67 68 5.824904 ACAACACAGAGAATGGCATATTC 57.175 39.130 0.00 1.43 0.00 1.75
68 69 5.126061 GGAACAACACAGAGAATGGCATATT 59.874 40.000 0.00 0.00 0.00 1.28
69 70 4.641989 GGAACAACACAGAGAATGGCATAT 59.358 41.667 0.00 0.00 0.00 1.78
70 71 4.009675 GGAACAACACAGAGAATGGCATA 58.990 43.478 0.00 0.00 0.00 3.14
71 72 2.821969 GGAACAACACAGAGAATGGCAT 59.178 45.455 0.00 0.00 0.00 4.40
72 73 2.229792 GGAACAACACAGAGAATGGCA 58.770 47.619 0.00 0.00 0.00 4.92
73 74 2.229792 TGGAACAACACAGAGAATGGC 58.770 47.619 0.00 0.00 31.92 4.40
87 88 8.888579 TTTGTACAAACTTTTCTTTTGGAACA 57.111 26.923 17.01 0.00 38.12 3.18
88 89 7.955324 GCTTTGTACAAACTTTTCTTTTGGAAC 59.045 33.333 17.01 0.00 38.12 3.62
89 90 7.875554 AGCTTTGTACAAACTTTTCTTTTGGAA 59.124 29.630 17.01 0.00 38.12 3.53
90 91 7.382898 AGCTTTGTACAAACTTTTCTTTTGGA 58.617 30.769 17.01 0.00 38.12 3.53
91 92 7.595311 AGCTTTGTACAAACTTTTCTTTTGG 57.405 32.000 17.01 4.44 38.12 3.28
95 96 9.146984 GGTTTTAGCTTTGTACAAACTTTTCTT 57.853 29.630 17.01 1.39 0.00 2.52
96 97 8.528643 AGGTTTTAGCTTTGTACAAACTTTTCT 58.471 29.630 17.01 10.91 0.00 2.52
97 98 8.592155 CAGGTTTTAGCTTTGTACAAACTTTTC 58.408 33.333 17.01 4.70 0.00 2.29
98 99 8.092068 ACAGGTTTTAGCTTTGTACAAACTTTT 58.908 29.630 17.01 5.80 0.00 2.27
99 100 7.608153 ACAGGTTTTAGCTTTGTACAAACTTT 58.392 30.769 17.01 8.07 0.00 2.66
100 101 7.165460 ACAGGTTTTAGCTTTGTACAAACTT 57.835 32.000 17.01 10.37 0.00 2.66
101 102 6.769134 ACAGGTTTTAGCTTTGTACAAACT 57.231 33.333 17.01 18.86 0.00 2.66
102 103 7.821595 AAACAGGTTTTAGCTTTGTACAAAC 57.178 32.000 17.01 13.40 0.00 2.93
103 104 8.834749 AAAAACAGGTTTTAGCTTTGTACAAA 57.165 26.923 19.53 19.53 41.45 2.83
104 105 9.356433 GTAAAAACAGGTTTTAGCTTTGTACAA 57.644 29.630 3.59 3.59 41.33 2.41
105 106 8.521176 TGTAAAAACAGGTTTTAGCTTTGTACA 58.479 29.630 10.27 10.09 41.33 2.90
106 107 8.914328 TGTAAAAACAGGTTTTAGCTTTGTAC 57.086 30.769 10.27 8.04 41.33 2.90
107 108 9.356433 GTTGTAAAAACAGGTTTTAGCTTTGTA 57.644 29.630 10.27 0.00 41.33 2.41
108 109 7.873505 TGTTGTAAAAACAGGTTTTAGCTTTGT 59.126 29.630 10.27 0.00 41.33 2.83
109 110 8.245701 TGTTGTAAAAACAGGTTTTAGCTTTG 57.754 30.769 10.27 0.00 41.33 2.77
110 111 8.714179 GTTGTTGTAAAAACAGGTTTTAGCTTT 58.286 29.630 10.27 0.00 41.33 3.51
111 112 7.873505 TGTTGTTGTAAAAACAGGTTTTAGCTT 59.126 29.630 10.27 0.00 41.33 3.74
112 113 7.379750 TGTTGTTGTAAAAACAGGTTTTAGCT 58.620 30.769 10.27 0.00 41.33 3.32
113 114 7.583860 TGTTGTTGTAAAAACAGGTTTTAGC 57.416 32.000 10.27 7.29 41.33 3.09
140 141 4.467438 CCAGCCCTAAGAACCATGATTTTT 59.533 41.667 0.00 0.00 0.00 1.94
141 142 4.026052 CCAGCCCTAAGAACCATGATTTT 58.974 43.478 0.00 0.00 0.00 1.82
142 143 3.269381 TCCAGCCCTAAGAACCATGATTT 59.731 43.478 0.00 0.00 0.00 2.17
143 144 2.852449 TCCAGCCCTAAGAACCATGATT 59.148 45.455 0.00 0.00 0.00 2.57
144 145 2.492025 TCCAGCCCTAAGAACCATGAT 58.508 47.619 0.00 0.00 0.00 2.45
145 146 1.965414 TCCAGCCCTAAGAACCATGA 58.035 50.000 0.00 0.00 0.00 3.07
146 147 2.806945 TTCCAGCCCTAAGAACCATG 57.193 50.000 0.00 0.00 0.00 3.66
147 148 3.269381 TGAATTCCAGCCCTAAGAACCAT 59.731 43.478 2.27 0.00 0.00 3.55
148 149 2.647299 TGAATTCCAGCCCTAAGAACCA 59.353 45.455 2.27 0.00 0.00 3.67
149 150 3.366052 TGAATTCCAGCCCTAAGAACC 57.634 47.619 2.27 0.00 0.00 3.62
150 151 3.129462 GCTTGAATTCCAGCCCTAAGAAC 59.871 47.826 18.47 0.00 0.00 3.01
151 152 3.356290 GCTTGAATTCCAGCCCTAAGAA 58.644 45.455 18.47 0.00 0.00 2.52
152 153 2.357154 GGCTTGAATTCCAGCCCTAAGA 60.357 50.000 31.28 0.00 41.28 2.10
153 154 2.027385 GGCTTGAATTCCAGCCCTAAG 58.973 52.381 31.28 14.99 41.28 2.18
154 155 1.681780 CGGCTTGAATTCCAGCCCTAA 60.682 52.381 33.52 8.17 44.01 2.69
155 156 0.107214 CGGCTTGAATTCCAGCCCTA 60.107 55.000 33.52 0.35 44.01 3.53
156 157 1.379044 CGGCTTGAATTCCAGCCCT 60.379 57.895 33.52 0.00 44.01 5.19
157 158 1.378514 TCGGCTTGAATTCCAGCCC 60.379 57.895 33.52 21.00 44.01 5.19
158 159 0.392998 TCTCGGCTTGAATTCCAGCC 60.393 55.000 31.47 31.47 43.49 4.85
159 160 0.729690 GTCTCGGCTTGAATTCCAGC 59.270 55.000 20.48 20.48 0.00 4.85
160 161 1.002366 CGTCTCGGCTTGAATTCCAG 58.998 55.000 2.27 2.20 0.00 3.86
161 162 0.391130 CCGTCTCGGCTTGAATTCCA 60.391 55.000 2.27 0.00 41.17 3.53
162 163 2.384203 CCGTCTCGGCTTGAATTCC 58.616 57.895 2.27 0.00 41.17 3.01
174 175 0.248296 CTAGCGAGTCAAGCCGTCTC 60.248 60.000 0.00 0.00 34.64 3.36
175 176 0.677098 TCTAGCGAGTCAAGCCGTCT 60.677 55.000 0.00 0.00 34.64 4.18
176 177 0.170561 TTCTAGCGAGTCAAGCCGTC 59.829 55.000 0.00 0.00 34.64 4.79
177 178 0.109226 GTTCTAGCGAGTCAAGCCGT 60.109 55.000 0.00 0.00 34.64 5.68
178 179 0.171455 AGTTCTAGCGAGTCAAGCCG 59.829 55.000 0.00 0.00 34.64 5.52
179 180 1.202582 TGAGTTCTAGCGAGTCAAGCC 59.797 52.381 0.00 0.00 34.64 4.35
180 181 2.094957 ACTGAGTTCTAGCGAGTCAAGC 60.095 50.000 0.00 0.00 0.00 4.01
181 182 3.840890 ACTGAGTTCTAGCGAGTCAAG 57.159 47.619 0.00 3.53 0.00 3.02
182 183 5.001874 TCTTACTGAGTTCTAGCGAGTCAA 58.998 41.667 0.00 0.00 0.00 3.18
183 184 4.392445 GTCTTACTGAGTTCTAGCGAGTCA 59.608 45.833 0.00 4.18 0.00 3.41
184 185 4.392445 TGTCTTACTGAGTTCTAGCGAGTC 59.608 45.833 0.00 0.00 0.00 3.36
185 186 4.325119 TGTCTTACTGAGTTCTAGCGAGT 58.675 43.478 0.00 0.00 0.00 4.18
186 187 4.948608 TGTCTTACTGAGTTCTAGCGAG 57.051 45.455 0.00 0.00 0.00 5.03
187 188 4.517832 TGTTGTCTTACTGAGTTCTAGCGA 59.482 41.667 0.00 0.00 0.00 4.93
188 189 4.795268 TGTTGTCTTACTGAGTTCTAGCG 58.205 43.478 0.00 0.00 0.00 4.26
189 190 6.217294 ACTTGTTGTCTTACTGAGTTCTAGC 58.783 40.000 0.00 0.00 0.00 3.42
190 191 9.400638 CTAACTTGTTGTCTTACTGAGTTCTAG 57.599 37.037 0.00 0.00 31.97 2.43
191 192 7.866393 GCTAACTTGTTGTCTTACTGAGTTCTA 59.134 37.037 0.00 0.00 31.97 2.10
192 193 6.702282 GCTAACTTGTTGTCTTACTGAGTTCT 59.298 38.462 0.00 0.00 31.97 3.01
193 194 6.702282 AGCTAACTTGTTGTCTTACTGAGTTC 59.298 38.462 0.00 0.00 31.97 3.01
194 195 6.583562 AGCTAACTTGTTGTCTTACTGAGTT 58.416 36.000 0.00 0.00 33.22 3.01
195 196 6.163135 AGCTAACTTGTTGTCTTACTGAGT 57.837 37.500 0.00 0.00 0.00 3.41
196 197 6.216569 TGAGCTAACTTGTTGTCTTACTGAG 58.783 40.000 0.00 0.00 0.00 3.35
197 198 6.156748 TGAGCTAACTTGTTGTCTTACTGA 57.843 37.500 0.00 0.00 0.00 3.41
198 199 5.107298 GCTGAGCTAACTTGTTGTCTTACTG 60.107 44.000 0.00 0.00 0.00 2.74
199 200 4.991687 GCTGAGCTAACTTGTTGTCTTACT 59.008 41.667 0.00 0.00 0.00 2.24
200 201 4.991687 AGCTGAGCTAACTTGTTGTCTTAC 59.008 41.667 4.49 0.00 36.99 2.34
201 202 5.215252 AGCTGAGCTAACTTGTTGTCTTA 57.785 39.130 4.49 0.00 36.99 2.10
202 203 4.078639 AGCTGAGCTAACTTGTTGTCTT 57.921 40.909 4.49 0.00 36.99 3.01
203 204 3.760580 AGCTGAGCTAACTTGTTGTCT 57.239 42.857 4.49 0.00 36.99 3.41
204 205 3.809832 TCAAGCTGAGCTAACTTGTTGTC 59.190 43.478 7.68 0.00 41.22 3.18
205 206 3.561725 GTCAAGCTGAGCTAACTTGTTGT 59.438 43.478 7.68 0.00 41.22 3.32
206 207 3.812053 AGTCAAGCTGAGCTAACTTGTTG 59.188 43.478 7.68 0.00 41.22 3.33
207 208 4.061596 GAGTCAAGCTGAGCTAACTTGTT 58.938 43.478 19.42 10.50 41.22 2.83
208 209 3.658709 GAGTCAAGCTGAGCTAACTTGT 58.341 45.455 19.42 2.76 41.22 3.16
209 210 2.665537 CGAGTCAAGCTGAGCTAACTTG 59.334 50.000 19.42 18.46 38.25 3.16
210 211 2.297597 ACGAGTCAAGCTGAGCTAACTT 59.702 45.455 19.42 6.19 38.25 2.66
211 212 1.889829 ACGAGTCAAGCTGAGCTAACT 59.110 47.619 18.75 18.75 38.25 2.24
212 213 1.989165 CACGAGTCAAGCTGAGCTAAC 59.011 52.381 7.68 9.67 38.25 2.34
213 214 1.886542 TCACGAGTCAAGCTGAGCTAA 59.113 47.619 7.68 0.00 38.25 3.09
245 246 0.952280 ACGAGTCGAGCTGAGTTTGA 59.048 50.000 21.50 0.00 0.00 2.69
253 254 0.443088 CGAGTTACACGAGTCGAGCT 59.557 55.000 21.50 3.94 43.39 4.09
263 264 0.099082 AGCTAGCTCGCGAGTTACAC 59.901 55.000 34.46 24.14 34.40 2.90
280 281 2.597748 GAGTTTAACGAGTTAGGCGAGC 59.402 50.000 0.00 0.00 0.00 5.03
372 373 5.645929 TGGTTTGTGAAGAATATGCGTGTAT 59.354 36.000 0.00 0.00 0.00 2.29
374 375 3.818210 TGGTTTGTGAAGAATATGCGTGT 59.182 39.130 0.00 0.00 0.00 4.49
375 376 4.158384 GTGGTTTGTGAAGAATATGCGTG 58.842 43.478 0.00 0.00 0.00 5.34
378 379 4.616802 CGTTGTGGTTTGTGAAGAATATGC 59.383 41.667 0.00 0.00 0.00 3.14
381 382 5.760743 TGATCGTTGTGGTTTGTGAAGAATA 59.239 36.000 0.00 0.00 0.00 1.75
394 395 5.757886 AGTGTAAATTGTTGATCGTTGTGG 58.242 37.500 0.00 0.00 0.00 4.17
431 433 4.811555 TGTTGTCATTTGTAGAGTGCAC 57.188 40.909 9.40 9.40 0.00 4.57
451 453 8.865090 AGGGACAAGAGATAAGTATCACTATTG 58.135 37.037 0.00 0.00 33.45 1.90
453 455 9.440761 AAAGGGACAAGAGATAAGTATCACTAT 57.559 33.333 1.35 0.00 33.45 2.12
454 456 8.840200 AAAGGGACAAGAGATAAGTATCACTA 57.160 34.615 1.35 0.00 33.45 2.74
455 457 7.741554 AAAGGGACAAGAGATAAGTATCACT 57.258 36.000 1.35 0.00 35.58 3.41
456 458 8.794335 AAAAAGGGACAAGAGATAAGTATCAC 57.206 34.615 1.35 0.00 35.17 3.06
463 465 9.947433 TCGTAAATAAAAAGGGACAAGAGATAA 57.053 29.630 0.00 0.00 0.00 1.75
464 466 9.595823 CTCGTAAATAAAAAGGGACAAGAGATA 57.404 33.333 0.00 0.00 0.00 1.98
465 467 7.553044 CCTCGTAAATAAAAAGGGACAAGAGAT 59.447 37.037 0.00 0.00 0.00 2.75
466 468 6.877322 CCTCGTAAATAAAAAGGGACAAGAGA 59.123 38.462 0.00 0.00 0.00 3.10
467 469 6.653740 ACCTCGTAAATAAAAAGGGACAAGAG 59.346 38.462 0.00 0.00 0.00 2.85
468 470 6.536447 ACCTCGTAAATAAAAAGGGACAAGA 58.464 36.000 0.00 0.00 0.00 3.02
469 471 6.812879 ACCTCGTAAATAAAAAGGGACAAG 57.187 37.500 0.00 0.00 0.00 3.16
470 472 8.688747 TTTACCTCGTAAATAAAAAGGGACAA 57.311 30.769 0.00 0.00 33.76 3.18
471 473 8.732531 CATTTACCTCGTAAATAAAAAGGGACA 58.267 33.333 8.94 0.00 43.92 4.02
472 474 8.949177 TCATTTACCTCGTAAATAAAAAGGGAC 58.051 33.333 8.94 0.00 43.92 4.46
473 475 9.689501 ATCATTTACCTCGTAAATAAAAAGGGA 57.310 29.630 8.94 2.87 43.92 4.20
488 490 7.096558 CGAGCTAACGAGTTAATCATTTACCTC 60.097 40.741 0.00 0.00 35.09 3.85
489 491 6.696148 CGAGCTAACGAGTTAATCATTTACCT 59.304 38.462 0.00 0.00 35.09 3.08
490 492 6.694411 TCGAGCTAACGAGTTAATCATTTACC 59.306 38.462 0.00 0.00 37.37 2.85
491 493 7.675270 TCGAGCTAACGAGTTAATCATTTAC 57.325 36.000 0.00 0.00 37.37 2.01
543 545 3.181423 ACCTGGGTTTTGATCCAAGCTTA 60.181 43.478 0.00 0.00 31.97 3.09
549 551 1.060729 TCGACCTGGGTTTTGATCCA 58.939 50.000 0.00 0.00 0.00 3.41
554 556 4.700213 ACTAATGAATCGACCTGGGTTTTG 59.300 41.667 0.00 0.00 0.00 2.44
560 562 4.503910 TGTTGACTAATGAATCGACCTGG 58.496 43.478 0.00 0.00 0.00 4.45
562 564 5.794894 ACTTGTTGACTAATGAATCGACCT 58.205 37.500 0.00 0.00 0.00 3.85
637 639 0.382515 CGGGGCTGAAACGAAAACAA 59.617 50.000 0.00 0.00 0.00 2.83
638 640 0.464013 TCGGGGCTGAAACGAAAACA 60.464 50.000 0.00 0.00 33.21 2.83
651 653 2.636299 TTTTTAGCACAGTCGGGGC 58.364 52.632 0.00 0.00 0.00 5.80
741 753 0.171455 AGGACTGTCAATCTCGACGC 59.829 55.000 10.38 0.00 38.84 5.19
751 766 0.916086 ACCAACACCAAGGACTGTCA 59.084 50.000 10.38 0.00 0.00 3.58
771 786 8.108782 GTCGACCGAAGAATTAGTTAAATCTTG 58.891 37.037 3.51 0.00 0.00 3.02
772 787 7.008992 CGTCGACCGAAGAATTAGTTAAATCTT 59.991 37.037 10.58 2.65 39.56 2.40
777 792 4.155826 TCCGTCGACCGAAGAATTAGTTAA 59.844 41.667 10.58 0.00 39.56 2.01
787 802 2.717530 CTAATTCTCCGTCGACCGAAG 58.282 52.381 10.58 5.09 39.56 3.79
798 813 7.810759 TGTTTTATTCGGTTTTGCTAATTCTCC 59.189 33.333 0.00 0.00 0.00 3.71
841 856 3.078837 TCCATTTCGTTAAGACAAGGCC 58.921 45.455 0.00 0.00 0.00 5.19
842 857 4.759516 TTCCATTTCGTTAAGACAAGGC 57.240 40.909 0.00 0.00 0.00 4.35
845 860 4.393680 CCCGATTCCATTTCGTTAAGACAA 59.606 41.667 0.00 0.00 34.85 3.18
847 862 3.311596 CCCCGATTCCATTTCGTTAAGAC 59.688 47.826 0.00 0.00 34.85 3.01
848 863 3.054948 ACCCCGATTCCATTTCGTTAAGA 60.055 43.478 0.00 0.00 34.85 2.10
849 864 3.275999 ACCCCGATTCCATTTCGTTAAG 58.724 45.455 0.00 0.00 34.85 1.85
850 865 3.353370 ACCCCGATTCCATTTCGTTAA 57.647 42.857 0.00 0.00 34.85 2.01
853 868 3.353370 TTTACCCCGATTCCATTTCGT 57.647 42.857 0.00 0.00 34.85 3.85
854 869 3.066203 CCTTTTACCCCGATTCCATTTCG 59.934 47.826 0.00 0.00 36.38 3.46
856 871 4.264217 ACTCCTTTTACCCCGATTCCATTT 60.264 41.667 0.00 0.00 0.00 2.32
858 873 2.850568 ACTCCTTTTACCCCGATTCCAT 59.149 45.455 0.00 0.00 0.00 3.41
859 874 2.271777 ACTCCTTTTACCCCGATTCCA 58.728 47.619 0.00 0.00 0.00 3.53
860 875 4.492494 TTACTCCTTTTACCCCGATTCC 57.508 45.455 0.00 0.00 0.00 3.01
861 876 6.117488 TGATTTACTCCTTTTACCCCGATTC 58.883 40.000 0.00 0.00 0.00 2.52
862 877 6.069705 TGATTTACTCCTTTTACCCCGATT 57.930 37.500 0.00 0.00 0.00 3.34
863 878 5.703730 TGATTTACTCCTTTTACCCCGAT 57.296 39.130 0.00 0.00 0.00 4.18
864 879 5.677567 GATGATTTACTCCTTTTACCCCGA 58.322 41.667 0.00 0.00 0.00 5.14
865 880 4.510340 CGATGATTTACTCCTTTTACCCCG 59.490 45.833 0.00 0.00 0.00 5.73
866 881 4.820173 CCGATGATTTACTCCTTTTACCCC 59.180 45.833 0.00 0.00 0.00 4.95
867 882 5.434408 ACCGATGATTTACTCCTTTTACCC 58.566 41.667 0.00 0.00 0.00 3.69
868 883 8.496707 TTTACCGATGATTTACTCCTTTTACC 57.503 34.615 0.00 0.00 0.00 2.85
869 884 8.610035 CCTTTACCGATGATTTACTCCTTTTAC 58.390 37.037 0.00 0.00 0.00 2.01
870 885 8.323567 ACCTTTACCGATGATTTACTCCTTTTA 58.676 33.333 0.00 0.00 0.00 1.52
871 886 7.173032 ACCTTTACCGATGATTTACTCCTTTT 58.827 34.615 0.00 0.00 0.00 2.27
874 889 5.661759 AGACCTTTACCGATGATTTACTCCT 59.338 40.000 0.00 0.00 0.00 3.69
887 902 4.549458 TCGTTAAGACAAGACCTTTACCG 58.451 43.478 0.00 0.00 0.00 4.02
894 909 7.980742 AATTTTGTTTCGTTAAGACAAGACC 57.019 32.000 0.00 0.00 35.04 3.85
895 910 8.529102 GGAAATTTTGTTTCGTTAAGACAAGAC 58.471 33.333 0.00 0.00 35.04 3.01
930 947 4.805192 GCACACAAGAGAAAGCATGAAAAA 59.195 37.500 0.00 0.00 0.00 1.94
938 955 1.595489 CGTGTGCACACAAGAGAAAGC 60.595 52.381 40.31 16.93 46.75 3.51
942 959 1.887242 GCCGTGTGCACACAAGAGA 60.887 57.895 40.31 8.76 46.75 3.10
943 960 2.633657 GCCGTGTGCACACAAGAG 59.366 61.111 40.31 28.32 46.75 2.85
945 962 2.074230 ATTGGCCGTGTGCACACAAG 62.074 55.000 40.31 32.59 46.75 3.16
950 967 0.596082 ACTAAATTGGCCGTGTGCAC 59.404 50.000 10.75 10.75 43.89 4.57
963 980 1.743995 GCGTCACCGGCCACTAAAT 60.744 57.895 0.00 0.00 33.68 1.40
981 998 0.247934 TCAGCAGCGTATCGTGTACG 60.248 55.000 15.34 15.34 43.13 3.67
982 999 1.781429 CATCAGCAGCGTATCGTGTAC 59.219 52.381 0.00 0.00 0.00 2.90
1002 1019 4.424566 CGTGGTTGCTGCCCATGC 62.425 66.667 4.54 0.00 33.76 4.06
1003 1020 2.672651 TCGTGGTTGCTGCCCATG 60.673 61.111 9.97 9.97 39.83 3.66
1008 1025 1.594862 GTGATATCTCGTGGTTGCTGC 59.405 52.381 3.98 0.00 0.00 5.25
1106 1129 2.243736 TCCTCCTTTTGGTTCACTGGTT 59.756 45.455 0.00 0.00 41.38 3.67
1107 1130 1.850345 TCCTCCTTTTGGTTCACTGGT 59.150 47.619 0.00 0.00 41.38 4.00
1108 1131 2.508526 CTCCTCCTTTTGGTTCACTGG 58.491 52.381 0.00 0.00 41.38 4.00
1109 1132 2.508526 CCTCCTCCTTTTGGTTCACTG 58.491 52.381 0.00 0.00 41.38 3.66
1110 1133 1.202940 GCCTCCTCCTTTTGGTTCACT 60.203 52.381 0.00 0.00 41.38 3.41
1116 1139 0.961753 GTGTTGCCTCCTCCTTTTGG 59.038 55.000 0.00 0.00 42.21 3.28
1126 1149 0.741221 GGAGTGATCGGTGTTGCCTC 60.741 60.000 0.00 0.00 34.25 4.70
1131 1159 1.292223 CCGTGGAGTGATCGGTGTT 59.708 57.895 0.00 0.00 39.51 3.32
1132 1160 2.970639 CCGTGGAGTGATCGGTGT 59.029 61.111 0.00 0.00 39.51 4.16
1154 1215 0.034896 GAACGCCTTGAGGTTGAGGA 59.965 55.000 0.00 0.00 34.91 3.71
1330 1427 3.123620 CACCTCTGCTCGCTTGGC 61.124 66.667 0.00 0.00 0.00 4.52
2278 2450 6.014413 TCAAATCAAAATTCAGAAGGCATGGA 60.014 34.615 0.00 0.00 0.00 3.41
2299 2471 5.212532 ACTATTTGGCTTTGTGCATCAAA 57.787 34.783 12.00 12.00 45.15 2.69
2347 2519 8.084985 ACCGACCCCAATATTTTGATTTTATT 57.915 30.769 0.00 0.00 34.60 1.40
2348 2520 7.669089 ACCGACCCCAATATTTTGATTTTAT 57.331 32.000 0.00 0.00 34.60 1.40
2349 2521 8.591114 TTACCGACCCCAATATTTTGATTTTA 57.409 30.769 0.00 0.00 34.60 1.52
2396 2599 5.695816 TGAATTCATGCTTGTTACTTTTGCC 59.304 36.000 3.38 0.00 0.00 4.52
2434 2637 4.896829 TGGGCCGGCGTTTGGAAA 62.897 61.111 22.54 0.00 0.00 3.13
2435 2638 4.669809 ATGGGCCGGCGTTTGGAA 62.670 61.111 22.54 0.10 0.00 3.53
2438 2641 3.124798 GATGATGGGCCGGCGTTTG 62.125 63.158 22.54 0.00 0.00 2.93
2439 2642 2.828549 GATGATGGGCCGGCGTTT 60.829 61.111 22.54 6.88 0.00 3.60
2440 2643 4.108299 TGATGATGGGCCGGCGTT 62.108 61.111 22.54 7.31 0.00 4.84
2441 2644 4.856801 GTGATGATGGGCCGGCGT 62.857 66.667 22.54 9.11 0.00 5.68
2442 2645 4.552365 AGTGATGATGGGCCGGCG 62.552 66.667 22.54 0.00 0.00 6.46
2443 2646 2.124151 AAGTGATGATGGGCCGGC 60.124 61.111 21.18 21.18 0.00 6.13
2444 2647 1.526917 GGAAGTGATGATGGGCCGG 60.527 63.158 0.00 0.00 0.00 6.13
2445 2648 0.533755 GAGGAAGTGATGATGGGCCG 60.534 60.000 0.00 0.00 0.00 6.13
2446 2649 0.842635 AGAGGAAGTGATGATGGGCC 59.157 55.000 0.00 0.00 0.00 5.80
2531 2739 2.832733 AGGGTAAACTAGTCTGCAGACC 59.167 50.000 37.09 22.74 45.85 3.85
2567 2775 2.412870 TCAGTGTGTAATCAACAGCCG 58.587 47.619 0.00 0.00 39.29 5.52
2598 2806 4.437682 CCCCCAGCTGATGAACTTATAA 57.562 45.455 17.39 0.00 0.00 0.98
2700 2908 2.488204 TGGATCAACATCGGCTTTCA 57.512 45.000 0.00 0.00 0.00 2.69
2730 2938 1.067669 TCGCCATCGATCTCTTCAAGG 59.932 52.381 0.00 0.00 40.21 3.61
2793 3012 1.158007 AGGTGAACCCTGGTGGAAAT 58.842 50.000 0.00 0.00 44.08 2.17
2815 3034 2.810439 TTCAGCCAAAATTTGACCGG 57.190 45.000 7.37 0.00 0.00 5.28
2837 3056 1.608590 AGTGACTCAAAATGCGGTTGG 59.391 47.619 0.00 0.00 0.00 3.77
2843 3062 2.667724 GCTCAGCAGTGACTCAAAATGC 60.668 50.000 0.00 4.64 37.15 3.56
2951 3170 0.528924 TACCGGTGGACTGTTCATCG 59.471 55.000 19.93 14.76 38.35 3.84
3035 3254 1.434287 GTTTTGTTGGTTCCCGCGT 59.566 52.632 4.92 0.00 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.