Multiple sequence alignment - TraesCS2B01G050500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G050500 chr2B 100.000 7294 0 0 1 7294 24921271 24913978 0.000000e+00 13470.0
1 TraesCS2B01G050500 chr2A 95.598 4407 122 21 2896 7251 15877893 15882278 0.000000e+00 6998.0
2 TraesCS2B01G050500 chr2A 89.901 1218 87 18 1 1208 15876343 15877534 0.000000e+00 1535.0
3 TraesCS2B01G050500 chr2A 91.560 391 16 6 2318 2702 15877522 15877901 2.330000e-144 523.0
4 TraesCS2B01G050500 chr2D 93.315 1107 56 11 1221 2322 1641884 1640791 0.000000e+00 1618.0
5 TraesCS2B01G050500 chr2D 93.200 1103 57 8 1221 2318 618317615 618316526 0.000000e+00 1605.0
6 TraesCS2B01G050500 chr2D 91.222 1105 54 8 1221 2321 20651045 20652110 0.000000e+00 1463.0
7 TraesCS2B01G050500 chr2D 91.198 1102 52 10 1221 2318 205593539 205592479 0.000000e+00 1456.0
8 TraesCS2B01G050500 chr2D 88.889 180 19 1 4 182 13680048 13679869 3.430000e-53 220.0
9 TraesCS2B01G050500 chr2D 81.250 112 19 2 6056 6166 478636 478746 1.010000e-13 89.8
10 TraesCS2B01G050500 chr6B 93.076 1112 62 8 1221 2328 205046548 205047648 0.000000e+00 1613.0
11 TraesCS2B01G050500 chr6B 78.177 1086 209 23 3682 4753 5933295 5934366 0.000000e+00 667.0
12 TraesCS2B01G050500 chr6B 80.325 615 113 7 4113 4721 75520201 75519589 6.670000e-125 459.0
13 TraesCS2B01G050500 chr6B 78.095 420 75 14 2983 3390 5597016 5596602 4.370000e-62 250.0
14 TraesCS2B01G050500 chr5D 93.260 1098 60 8 1221 2314 542210438 542209351 0.000000e+00 1605.0
15 TraesCS2B01G050500 chr5D 76.586 1072 239 11 3685 4753 549584258 549585320 4.910000e-161 579.0
16 TraesCS2B01G050500 chr5D 92.219 347 14 5 1221 1562 459862036 459861698 5.120000e-131 479.0
17 TraesCS2B01G050500 chr5D 71.576 971 205 57 4851 5787 27013813 27012880 1.610000e-46 198.0
18 TraesCS2B01G050500 chr4B 93.013 1102 58 7 1221 2318 182297004 182295918 0.000000e+00 1591.0
19 TraesCS2B01G050500 chr3B 92.818 1100 66 6 1221 2315 16893861 16894952 0.000000e+00 1581.0
20 TraesCS2B01G050500 chr7B 92.350 1098 71 5 1221 2314 719844210 719845298 0.000000e+00 1550.0
21 TraesCS2B01G050500 chr7B 79.541 1046 193 17 3689 4722 700386979 700388015 0.000000e+00 726.0
22 TraesCS2B01G050500 chr7B 75.712 1404 284 44 4849 6216 700388030 700389412 0.000000e+00 651.0
23 TraesCS2B01G050500 chr6D 90.942 1104 56 10 1221 2319 70564043 70565107 0.000000e+00 1445.0
24 TraesCS2B01G050500 chr6D 76.886 1047 207 27 3685 4721 36077915 36076894 1.780000e-155 560.0
25 TraesCS2B01G050500 chr6D 71.868 1269 280 62 4851 6078 36076875 36075643 1.990000e-75 294.0
26 TraesCS2B01G050500 chr7D 90.984 1098 55 9 1221 2314 374567329 374568386 0.000000e+00 1439.0
27 TraesCS2B01G050500 chr7D 80.556 1044 186 14 3689 4722 611218389 611219425 0.000000e+00 787.0
28 TraesCS2B01G050500 chr7D 91.339 508 30 6 1223 1726 154599043 154599540 0.000000e+00 682.0
29 TraesCS2B01G050500 chr7D 75.738 1389 275 43 4849 6195 611219440 611220808 6.170000e-180 641.0
30 TraesCS2B01G050500 chr7A 90.721 1110 56 17 1221 2326 497684949 497683883 0.000000e+00 1435.0
31 TraesCS2B01G050500 chr7A 90.766 1018 73 12 34 1041 353260216 353261222 0.000000e+00 1339.0
32 TraesCS2B01G050500 chr7A 74.821 1398 296 43 4849 6215 701186541 701187913 1.360000e-161 580.0
33 TraesCS2B01G050500 chr7A 81.450 469 79 5 5733 6194 701252801 701253268 1.920000e-100 377.0
34 TraesCS2B01G050500 chr1D 90.893 1098 57 30 1221 2314 460551837 460550779 0.000000e+00 1434.0
35 TraesCS2B01G050500 chr1A 90.228 1095 53 23 1221 2314 251342727 251343768 0.000000e+00 1380.0
36 TraesCS2B01G050500 chr1A 89.731 1003 62 12 49 1041 449794153 449793182 0.000000e+00 1243.0
37 TraesCS2B01G050500 chr1A 88.919 740 66 7 34 764 42805045 42805777 0.000000e+00 898.0
38 TraesCS2B01G050500 chr6A 91.426 1003 66 10 49 1041 214878627 214877635 0.000000e+00 1358.0
39 TraesCS2B01G050500 chr3D 95.381 801 35 2 1519 2319 140419557 140418759 0.000000e+00 1273.0
40 TraesCS2B01G050500 chr5B 76.923 1040 231 8 3685 4721 701161221 701162254 3.790000e-162 582.0
41 TraesCS2B01G050500 chr4A 79.836 610 121 2 4113 4721 621130532 621131140 1.870000e-120 444.0
42 TraesCS2B01G050500 chr4A 73.638 918 197 34 5299 6194 47656352 47657246 5.490000e-81 313.0
43 TraesCS2B01G050500 chr4A 75.993 554 119 11 5644 6192 722930921 722931465 2.590000e-69 274.0
44 TraesCS2B01G050500 chr3A 79.287 449 84 8 3026 3468 731773374 731773819 9.190000e-79 305.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G050500 chr2B 24913978 24921271 7293 True 13470.000000 13470 100.0000 1 7294 1 chr2B.!!$R1 7293
1 TraesCS2B01G050500 chr2A 15876343 15882278 5935 False 3018.666667 6998 92.3530 1 7251 3 chr2A.!!$F1 7250
2 TraesCS2B01G050500 chr2D 1640791 1641884 1093 True 1618.000000 1618 93.3150 1221 2322 1 chr2D.!!$R1 1101
3 TraesCS2B01G050500 chr2D 618316526 618317615 1089 True 1605.000000 1605 93.2000 1221 2318 1 chr2D.!!$R4 1097
4 TraesCS2B01G050500 chr2D 20651045 20652110 1065 False 1463.000000 1463 91.2220 1221 2321 1 chr2D.!!$F2 1100
5 TraesCS2B01G050500 chr2D 205592479 205593539 1060 True 1456.000000 1456 91.1980 1221 2318 1 chr2D.!!$R3 1097
6 TraesCS2B01G050500 chr6B 205046548 205047648 1100 False 1613.000000 1613 93.0760 1221 2328 1 chr6B.!!$F2 1107
7 TraesCS2B01G050500 chr6B 5933295 5934366 1071 False 667.000000 667 78.1770 3682 4753 1 chr6B.!!$F1 1071
8 TraesCS2B01G050500 chr6B 75519589 75520201 612 True 459.000000 459 80.3250 4113 4721 1 chr6B.!!$R2 608
9 TraesCS2B01G050500 chr5D 542209351 542210438 1087 True 1605.000000 1605 93.2600 1221 2314 1 chr5D.!!$R3 1093
10 TraesCS2B01G050500 chr5D 549584258 549585320 1062 False 579.000000 579 76.5860 3685 4753 1 chr5D.!!$F1 1068
11 TraesCS2B01G050500 chr4B 182295918 182297004 1086 True 1591.000000 1591 93.0130 1221 2318 1 chr4B.!!$R1 1097
12 TraesCS2B01G050500 chr3B 16893861 16894952 1091 False 1581.000000 1581 92.8180 1221 2315 1 chr3B.!!$F1 1094
13 TraesCS2B01G050500 chr7B 719844210 719845298 1088 False 1550.000000 1550 92.3500 1221 2314 1 chr7B.!!$F1 1093
14 TraesCS2B01G050500 chr7B 700386979 700389412 2433 False 688.500000 726 77.6265 3689 6216 2 chr7B.!!$F2 2527
15 TraesCS2B01G050500 chr6D 70564043 70565107 1064 False 1445.000000 1445 90.9420 1221 2319 1 chr6D.!!$F1 1098
16 TraesCS2B01G050500 chr6D 36075643 36077915 2272 True 427.000000 560 74.3770 3685 6078 2 chr6D.!!$R1 2393
17 TraesCS2B01G050500 chr7D 374567329 374568386 1057 False 1439.000000 1439 90.9840 1221 2314 1 chr7D.!!$F2 1093
18 TraesCS2B01G050500 chr7D 611218389 611220808 2419 False 714.000000 787 78.1470 3689 6195 2 chr7D.!!$F3 2506
19 TraesCS2B01G050500 chr7A 497683883 497684949 1066 True 1435.000000 1435 90.7210 1221 2326 1 chr7A.!!$R1 1105
20 TraesCS2B01G050500 chr7A 353260216 353261222 1006 False 1339.000000 1339 90.7660 34 1041 1 chr7A.!!$F1 1007
21 TraesCS2B01G050500 chr7A 701186541 701187913 1372 False 580.000000 580 74.8210 4849 6215 1 chr7A.!!$F2 1366
22 TraesCS2B01G050500 chr1D 460550779 460551837 1058 True 1434.000000 1434 90.8930 1221 2314 1 chr1D.!!$R1 1093
23 TraesCS2B01G050500 chr1A 251342727 251343768 1041 False 1380.000000 1380 90.2280 1221 2314 1 chr1A.!!$F2 1093
24 TraesCS2B01G050500 chr1A 449793182 449794153 971 True 1243.000000 1243 89.7310 49 1041 1 chr1A.!!$R1 992
25 TraesCS2B01G050500 chr1A 42805045 42805777 732 False 898.000000 898 88.9190 34 764 1 chr1A.!!$F1 730
26 TraesCS2B01G050500 chr6A 214877635 214878627 992 True 1358.000000 1358 91.4260 49 1041 1 chr6A.!!$R1 992
27 TraesCS2B01G050500 chr3D 140418759 140419557 798 True 1273.000000 1273 95.3810 1519 2319 1 chr3D.!!$R1 800
28 TraesCS2B01G050500 chr5B 701161221 701162254 1033 False 582.000000 582 76.9230 3685 4721 1 chr5B.!!$F1 1036
29 TraesCS2B01G050500 chr4A 621130532 621131140 608 False 444.000000 444 79.8360 4113 4721 1 chr4A.!!$F2 608
30 TraesCS2B01G050500 chr4A 47656352 47657246 894 False 313.000000 313 73.6380 5299 6194 1 chr4A.!!$F1 895
31 TraesCS2B01G050500 chr4A 722930921 722931465 544 False 274.000000 274 75.9930 5644 6192 1 chr4A.!!$F3 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 164 0.108377 TACATGCACGGCTGTACCAG 60.108 55.0 0.00 0.00 39.03 4.00 F
817 833 0.534412 CAGCTCCAGAGGTACCACAG 59.466 60.0 15.94 4.52 37.39 3.66 F
2562 2633 0.094730 GCCACAACGAACGCAGATAC 59.905 55.0 0.00 0.00 0.00 2.24 F
2784 2861 0.031857 CAGCAATTTGGACCGCAACA 59.968 50.0 0.00 0.00 0.00 3.33 F
2785 2862 0.749649 AGCAATTTGGACCGCAACAA 59.250 45.0 0.00 0.00 0.00 2.83 F
4298 4443 0.740149 CTGCTGGTGTTTGACTTGCA 59.260 50.0 0.00 0.00 33.79 4.08 F
4983 5180 0.899717 TCAACCTCAAGGCAATGGGC 60.900 55.0 0.00 0.00 43.74 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1090 1106 0.106918 ACAAGACCGGGTTTCAAGCA 60.107 50.000 6.32 0.00 0.00 3.91 R
2765 2842 0.031857 TGTTGCGGTCCAAATTGCTG 59.968 50.000 0.00 0.00 34.68 4.41 R
3496 3573 0.951558 CCAAACGGACCAACTTCAGG 59.048 55.000 0.00 0.00 0.00 3.86 R
3798 3875 1.152830 ACCGATGGCTGGGTTTTGT 59.847 52.632 0.00 0.00 30.73 2.83 R
4390 4584 1.188863 AGCCTTTTCCATGCATGACC 58.811 50.000 28.31 7.51 0.00 4.02 R
5403 5621 0.302890 CGCCAATCTCGATGTGCTTC 59.697 55.000 0.00 0.00 0.00 3.86 R
6387 6627 1.065418 GCAGCTGGTAAGGGCTTAAGA 60.065 52.381 17.12 0.00 36.59 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.807649 AATTAATTCAATGGAGCTGTAATTCAC 57.192 29.630 0.00 0.00 0.00 3.18
36 37 1.745653 GGAGCTGTAATTCACAAGGCC 59.254 52.381 0.00 0.00 36.48 5.19
70 71 8.473796 GTGTTGTAATTTTGTTTCGGTTGTATC 58.526 33.333 0.00 0.00 0.00 2.24
83 84 5.706916 TCGGTTGTATCTAGTTGTTCTGTC 58.293 41.667 0.00 0.00 0.00 3.51
85 86 5.573282 CGGTTGTATCTAGTTGTTCTGTCTG 59.427 44.000 0.00 0.00 0.00 3.51
162 164 0.108377 TACATGCACGGCTGTACCAG 60.108 55.000 0.00 0.00 39.03 4.00
204 206 2.291346 TGATCTGTTCTCCTGGTCGGTA 60.291 50.000 0.00 0.00 0.00 4.02
236 238 7.566760 TTACCAATGTATGATTTGCTAGTGG 57.433 36.000 0.00 0.00 0.00 4.00
246 248 7.759489 ATGATTTGCTAGTGGTTTCTTACAA 57.241 32.000 0.00 0.00 0.00 2.41
247 249 6.966021 TGATTTGCTAGTGGTTTCTTACAAC 58.034 36.000 0.00 0.00 0.00 3.32
261 267 8.272866 GGTTTCTTACAACATGTAACAATTTGC 58.727 33.333 0.00 0.00 37.86 3.68
263 269 7.922505 TCTTACAACATGTAACAATTTGCAC 57.077 32.000 0.00 0.00 37.86 4.57
264 270 7.711846 TCTTACAACATGTAACAATTTGCACT 58.288 30.769 0.00 0.00 37.86 4.40
265 271 7.647318 TCTTACAACATGTAACAATTTGCACTG 59.353 33.333 0.00 0.00 37.86 3.66
267 273 6.336566 ACAACATGTAACAATTTGCACTGAA 58.663 32.000 0.00 0.00 29.21 3.02
268 274 6.476380 ACAACATGTAACAATTTGCACTGAAG 59.524 34.615 0.00 0.00 29.21 3.02
269 275 6.147864 ACATGTAACAATTTGCACTGAAGT 57.852 33.333 0.00 0.00 29.21 3.01
270 276 6.572519 ACATGTAACAATTTGCACTGAAGTT 58.427 32.000 0.00 0.00 29.21 2.66
271 277 6.697019 ACATGTAACAATTTGCACTGAAGTTC 59.303 34.615 0.00 0.00 29.21 3.01
272 278 6.201226 TGTAACAATTTGCACTGAAGTTCA 57.799 33.333 5.25 5.25 0.00 3.18
273 279 6.033341 TGTAACAATTTGCACTGAAGTTCAC 58.967 36.000 0.08 0.00 0.00 3.18
274 280 4.717233 ACAATTTGCACTGAAGTTCACA 57.283 36.364 0.08 0.00 0.00 3.58
275 281 4.423732 ACAATTTGCACTGAAGTTCACAC 58.576 39.130 0.08 0.00 0.00 3.82
276 282 4.082300 ACAATTTGCACTGAAGTTCACACA 60.082 37.500 0.08 0.00 0.00 3.72
277 283 4.717233 ATTTGCACTGAAGTTCACACAA 57.283 36.364 0.08 4.11 0.00 3.33
278 284 4.511617 TTTGCACTGAAGTTCACACAAA 57.488 36.364 14.61 14.61 0.00 2.83
279 285 3.763097 TGCACTGAAGTTCACACAAAG 57.237 42.857 0.08 0.00 0.00 2.77
280 286 2.423185 TGCACTGAAGTTCACACAAAGG 59.577 45.455 0.08 0.00 0.00 3.11
281 287 2.223572 GCACTGAAGTTCACACAAAGGG 60.224 50.000 0.08 0.00 0.00 3.95
282 288 2.024414 ACTGAAGTTCACACAAAGGGC 58.976 47.619 0.08 0.00 0.00 5.19
283 289 2.301346 CTGAAGTTCACACAAAGGGCT 58.699 47.619 0.08 0.00 0.00 5.19
284 290 2.023673 TGAAGTTCACACAAAGGGCTG 58.976 47.619 0.08 0.00 0.00 4.85
285 291 2.024414 GAAGTTCACACAAAGGGCTGT 58.976 47.619 0.00 0.00 0.00 4.40
286 292 3.211045 GAAGTTCACACAAAGGGCTGTA 58.789 45.455 0.00 0.00 0.00 2.74
287 293 2.572290 AGTTCACACAAAGGGCTGTAC 58.428 47.619 0.00 0.00 0.00 2.90
288 294 2.172717 AGTTCACACAAAGGGCTGTACT 59.827 45.455 0.00 0.00 0.00 2.73
289 295 2.949644 GTTCACACAAAGGGCTGTACTT 59.050 45.455 0.00 0.00 0.00 2.24
290 296 4.131596 GTTCACACAAAGGGCTGTACTTA 58.868 43.478 0.00 0.00 0.00 2.24
291 297 4.002906 TCACACAAAGGGCTGTACTTAG 57.997 45.455 0.00 0.00 0.00 2.18
292 298 3.074412 CACACAAAGGGCTGTACTTAGG 58.926 50.000 0.00 0.00 0.00 2.69
293 299 2.976882 ACACAAAGGGCTGTACTTAGGA 59.023 45.455 0.00 0.00 0.00 2.94
298 304 2.753247 AGGGCTGTACTTAGGAAGAGG 58.247 52.381 0.00 0.00 0.00 3.69
304 310 4.342665 GCTGTACTTAGGAAGAGGCAGTAT 59.657 45.833 0.00 0.00 32.36 2.12
332 338 7.041635 TGTTTGAGAATGATCTGCAGAAAAA 57.958 32.000 22.50 9.69 35.54 1.94
344 350 1.804748 GCAGAAAAAGGAGGTACACCG 59.195 52.381 0.00 0.00 46.15 4.94
346 352 0.794473 GAAAAAGGAGGTACACCGCG 59.206 55.000 0.00 0.00 46.15 6.46
362 371 2.542595 ACCGCGTTTTCTTACTGAAGTG 59.457 45.455 4.92 0.00 35.89 3.16
376 385 7.879677 TCTTACTGAAGTGCATATAATCCATGG 59.120 37.037 4.97 4.97 34.03 3.66
395 410 6.151985 TCCATGGCGATTAAAGTTAAACACAT 59.848 34.615 6.96 0.00 0.00 3.21
412 427 1.342674 ACATGCCCCTGATGCTTGAAT 60.343 47.619 0.00 0.00 37.34 2.57
456 472 6.266168 TCTGCTGTCTAAAGAGAGAAAGAG 57.734 41.667 8.24 0.00 37.62 2.85
460 476 6.099341 GCTGTCTAAAGAGAGAAAGAGAAGG 58.901 44.000 8.24 0.00 37.62 3.46
475 491 8.898761 AGAAAGAGAAGGAAGAAAAAGAAGAAC 58.101 33.333 0.00 0.00 0.00 3.01
488 504 9.981114 AGAAAAAGAAGAACAGAACAAAAAGAA 57.019 25.926 0.00 0.00 0.00 2.52
512 528 8.961294 AAAAGAGATATCACAAAGAGGATCAG 57.039 34.615 5.32 0.00 37.82 2.90
535 551 1.750193 CATGGCATTGTCTACCGGTT 58.250 50.000 15.04 0.00 0.00 4.44
540 556 1.737793 GCATTGTCTACCGGTTCAAGG 59.262 52.381 15.04 18.14 0.00 3.61
543 559 2.825861 TGTCTACCGGTTCAAGGAAC 57.174 50.000 15.04 0.00 41.32 3.62
592 608 1.035932 ACATGATGCCAGAAGCCAGC 61.036 55.000 0.00 0.00 42.71 4.85
593 609 1.822613 ATGATGCCAGAAGCCAGCG 60.823 57.895 0.00 0.00 42.71 5.18
624 640 3.552384 ACCCGTCCTGCCGAAACA 61.552 61.111 0.00 0.00 0.00 2.83
672 688 1.761198 CTGAGGAGCTCCATGACATGA 59.239 52.381 33.90 5.95 38.89 3.07
676 692 2.306805 AGGAGCTCCATGACATGAAACA 59.693 45.455 33.90 0.00 38.89 2.83
680 696 2.816087 GCTCCATGACATGAAACAGTGT 59.184 45.455 17.24 0.00 0.00 3.55
730 746 1.518572 GTGATATATCGCCGCCCGG 60.519 63.158 14.27 1.59 37.59 5.73
761 777 7.288621 GGATTTCTTGGGGACATCATTTCTTAT 59.711 37.037 0.00 0.00 42.32 1.73
762 778 7.645058 TTTCTTGGGGACATCATTTCTTATC 57.355 36.000 0.00 0.00 42.32 1.75
763 779 5.368145 TCTTGGGGACATCATTTCTTATCG 58.632 41.667 0.00 0.00 42.32 2.92
764 780 3.476552 TGGGGACATCATTTCTTATCGC 58.523 45.455 0.00 0.00 33.40 4.58
767 783 3.430218 GGGACATCATTTCTTATCGCTCG 59.570 47.826 0.00 0.00 0.00 5.03
786 802 0.595095 GCTGCAAGTGTTCTTCCCTG 59.405 55.000 0.00 0.00 35.30 4.45
787 803 0.595095 CTGCAAGTGTTCTTCCCTGC 59.405 55.000 0.00 0.00 0.00 4.85
803 819 1.675415 CCTGCTTCTTGGAGACAGCTC 60.675 57.143 10.91 0.00 44.54 4.09
817 833 0.534412 CAGCTCCAGAGGTACCACAG 59.466 60.000 15.94 4.52 37.39 3.66
841 857 7.639850 CAGTTGCACATACTACATTTTAATCCG 59.360 37.037 0.00 0.00 0.00 4.18
843 859 8.605746 GTTGCACATACTACATTTTAATCCGTA 58.394 33.333 0.00 0.00 0.00 4.02
861 877 6.885952 TCCGTATTTTCTCATTGGTTTTCA 57.114 33.333 0.00 0.00 0.00 2.69
880 896 3.870274 TCACAGCTTCAGATCAGGATTG 58.130 45.455 0.00 0.00 0.00 2.67
905 921 3.610911 AGATCCGGCCTCTTTACTTTTG 58.389 45.455 0.00 0.00 0.00 2.44
930 946 2.223782 GGAGTGCAGAGATCTACAGCTG 60.224 54.545 13.48 13.48 0.00 4.24
932 948 2.426738 AGTGCAGAGATCTACAGCTGAC 59.573 50.000 23.35 2.93 0.00 3.51
940 956 0.541063 TCTACAGCTGACGGGTTGGA 60.541 55.000 23.35 0.53 0.00 3.53
990 1006 3.370315 CCTCCTGGGAGTGATTTTCTCTG 60.370 52.174 14.63 0.00 40.44 3.35
1079 1095 9.216117 AGATCGCAAAGTAGTTAGTTGTTAATT 57.784 29.630 0.00 0.00 0.00 1.40
1102 1118 2.250939 TCTGCGTGCTTGAAACCCG 61.251 57.895 0.00 0.00 0.00 5.28
1152 1168 7.503230 TGCACCTGTCATAATCATCATTTACAT 59.497 33.333 0.00 0.00 0.00 2.29
1158 1174 8.003629 TGTCATAATCATCATTTACATCCCCAA 58.996 33.333 0.00 0.00 0.00 4.12
1165 1181 5.736951 TCATTTACATCCCCAACAAAAGG 57.263 39.130 0.00 0.00 0.00 3.11
1305 1324 3.452786 CTCCTTCTCGCGGAGGCA 61.453 66.667 6.13 1.83 43.47 4.75
1516 1541 1.458777 ACCTCCGGTGTGTTCTGGA 60.459 57.895 0.00 0.00 40.18 3.86
1517 1542 1.004918 CCTCCGGTGTGTTCTGGAC 60.005 63.158 0.00 0.00 37.88 4.02
1551 1576 2.433217 TCGGTGTTCGAGGGAAACT 58.567 52.632 0.00 0.00 43.74 2.66
1569 1594 3.449494 TTTGGCTGCCTTGGCTGGA 62.449 57.895 21.03 0.00 0.00 3.86
1645 1670 1.561643 GACACCATCTCTCCACTCCA 58.438 55.000 0.00 0.00 0.00 3.86
1813 1840 3.411351 CGGTGGAGCGGTGTTTCG 61.411 66.667 0.00 0.00 0.00 3.46
1958 1985 1.735376 GAGACCGAGCAAGGCCGATA 61.735 60.000 0.00 0.00 33.69 2.92
2119 2147 0.394938 TGTTAGGTTTGGCTGCGAGA 59.605 50.000 0.00 0.00 0.00 4.04
2121 2149 2.084546 GTTAGGTTTGGCTGCGAGATT 58.915 47.619 0.00 0.00 0.00 2.40
2186 2215 1.538075 GATAGGAGTAGCGACAGAGGC 59.462 57.143 0.00 0.00 0.00 4.70
2291 2362 3.389139 TAGATGCAGAGGCCGGGGA 62.389 63.158 2.18 0.00 40.13 4.81
2378 2449 1.563410 AGAAGCCTCCCCAGATTTCTG 59.437 52.381 0.39 0.39 43.40 3.02
2434 2505 6.350110 CCGATTGAGAATGGTGTAATTTGGTT 60.350 38.462 0.00 0.00 0.00 3.67
2471 2542 6.425721 CAGTCATTTCAAAAGACCGGTAGTTA 59.574 38.462 7.34 0.00 32.82 2.24
2493 2564 8.198109 AGTTATGGTGTGATAAGCTAGTAACTG 58.802 37.037 0.00 0.00 30.20 3.16
2507 2578 5.520649 GCTAGTAACTGACAGAAATACAGCC 59.479 44.000 10.08 0.00 35.38 4.85
2525 2596 2.053865 CGGTGCCAGGCCAATGAAT 61.054 57.895 9.64 0.00 0.00 2.57
2540 2611 5.590259 GCCAATGAATCCTTCTAGCTTTACA 59.410 40.000 0.00 0.00 0.00 2.41
2542 2613 6.599244 CCAATGAATCCTTCTAGCTTTACACA 59.401 38.462 0.00 0.00 0.00 3.72
2550 2621 3.399330 TCTAGCTTTACACAGCCACAAC 58.601 45.455 0.00 0.00 41.12 3.32
2551 2622 0.944386 AGCTTTACACAGCCACAACG 59.056 50.000 0.00 0.00 41.12 4.10
2552 2623 0.941542 GCTTTACACAGCCACAACGA 59.058 50.000 0.00 0.00 33.21 3.85
2554 2625 2.853281 GCTTTACACAGCCACAACGAAC 60.853 50.000 0.00 0.00 33.21 3.95
2555 2626 0.931702 TTACACAGCCACAACGAACG 59.068 50.000 0.00 0.00 0.00 3.95
2556 2627 1.492319 TACACAGCCACAACGAACGC 61.492 55.000 0.00 0.00 0.00 4.84
2557 2628 2.512745 ACAGCCACAACGAACGCA 60.513 55.556 0.00 0.00 0.00 5.24
2558 2629 2.249309 CAGCCACAACGAACGCAG 59.751 61.111 0.00 0.00 0.00 5.18
2560 2631 1.301716 AGCCACAACGAACGCAGAT 60.302 52.632 0.00 0.00 0.00 2.90
2562 2633 0.094730 GCCACAACGAACGCAGATAC 59.905 55.000 0.00 0.00 0.00 2.24
2565 2636 1.068474 ACAACGAACGCAGATACAGC 58.932 50.000 0.00 0.00 0.00 4.40
2590 2667 6.197655 CAGGCAATCACACGATCATAAATTTG 59.802 38.462 0.00 0.00 0.00 2.32
2606 2683 7.962373 TCATAAATTTGTCAATTGAGTGCGTAG 59.038 33.333 8.80 0.00 32.57 3.51
2607 2684 4.685169 ATTTGTCAATTGAGTGCGTAGG 57.315 40.909 8.80 0.00 0.00 3.18
2608 2685 1.438651 TGTCAATTGAGTGCGTAGGC 58.561 50.000 8.80 0.00 40.52 3.93
2609 2686 7.002597 AATTTGTCAATTGAGTGCGTAGGCA 62.003 40.000 8.80 5.89 37.79 4.75
2662 2739 7.510549 TTATAAATTGGCATAAGGAGCTCAC 57.489 36.000 17.19 5.01 0.00 3.51
2663 2740 2.355010 ATTGGCATAAGGAGCTCACC 57.645 50.000 17.19 7.08 0.00 4.02
2693 2770 3.011821 TGGAAGACCTAGGATCAGACTGT 59.988 47.826 17.98 0.00 37.04 3.55
2700 2777 6.214412 AGACCTAGGATCAGACTGTTGATTTT 59.786 38.462 17.98 0.00 37.90 1.82
2701 2778 6.176183 ACCTAGGATCAGACTGTTGATTTTG 58.824 40.000 17.98 0.00 37.90 2.44
2702 2779 6.176183 CCTAGGATCAGACTGTTGATTTTGT 58.824 40.000 1.05 0.00 37.90 2.83
2703 2780 6.656693 CCTAGGATCAGACTGTTGATTTTGTT 59.343 38.462 1.05 0.00 37.90 2.83
2704 2781 7.824289 CCTAGGATCAGACTGTTGATTTTGTTA 59.176 37.037 1.05 0.00 37.90 2.41
2705 2782 7.678947 AGGATCAGACTGTTGATTTTGTTAG 57.321 36.000 1.59 0.00 37.90 2.34
2706 2783 6.150140 AGGATCAGACTGTTGATTTTGTTAGC 59.850 38.462 1.59 0.00 37.90 3.09
2707 2784 6.072508 GGATCAGACTGTTGATTTTGTTAGCA 60.073 38.462 1.59 0.00 37.90 3.49
2708 2785 6.304356 TCAGACTGTTGATTTTGTTAGCAG 57.696 37.500 1.59 0.00 0.00 4.24
2709 2786 5.239306 TCAGACTGTTGATTTTGTTAGCAGG 59.761 40.000 1.59 0.00 0.00 4.85
2710 2787 5.009010 CAGACTGTTGATTTTGTTAGCAGGT 59.991 40.000 0.00 0.00 0.00 4.00
2711 2788 5.009010 AGACTGTTGATTTTGTTAGCAGGTG 59.991 40.000 0.00 0.00 0.00 4.00
2712 2789 4.644685 ACTGTTGATTTTGTTAGCAGGTGT 59.355 37.500 0.00 0.00 0.00 4.16
2713 2790 4.930963 TGTTGATTTTGTTAGCAGGTGTG 58.069 39.130 0.00 0.00 0.00 3.82
2714 2791 4.400884 TGTTGATTTTGTTAGCAGGTGTGT 59.599 37.500 0.00 0.00 0.00 3.72
2715 2792 4.566545 TGATTTTGTTAGCAGGTGTGTG 57.433 40.909 0.00 0.00 0.00 3.82
2716 2793 2.861462 TTTTGTTAGCAGGTGTGTGC 57.139 45.000 0.00 0.00 44.35 4.57
2717 2794 1.756430 TTTGTTAGCAGGTGTGTGCA 58.244 45.000 0.00 0.00 46.60 4.57
2718 2795 1.979855 TTGTTAGCAGGTGTGTGCAT 58.020 45.000 0.00 0.00 46.60 3.96
2719 2796 1.522668 TGTTAGCAGGTGTGTGCATC 58.477 50.000 0.00 0.00 46.60 3.91
2720 2797 1.202746 TGTTAGCAGGTGTGTGCATCA 60.203 47.619 0.00 0.00 46.60 3.07
2721 2798 2.086869 GTTAGCAGGTGTGTGCATCAT 58.913 47.619 0.00 0.00 46.60 2.45
2722 2799 3.270027 GTTAGCAGGTGTGTGCATCATA 58.730 45.455 0.00 0.00 46.60 2.15
2723 2800 2.723322 AGCAGGTGTGTGCATCATAT 57.277 45.000 0.00 0.00 46.60 1.78
2724 2801 3.843893 AGCAGGTGTGTGCATCATATA 57.156 42.857 0.00 0.00 46.60 0.86
2725 2802 3.470709 AGCAGGTGTGTGCATCATATAC 58.529 45.455 0.00 0.00 46.60 1.47
2726 2803 2.221749 GCAGGTGTGTGCATCATATACG 59.778 50.000 0.00 0.00 43.41 3.06
2727 2804 2.221749 CAGGTGTGTGCATCATATACGC 59.778 50.000 0.00 0.00 0.00 4.42
2728 2805 1.531149 GGTGTGTGCATCATATACGCC 59.469 52.381 0.00 0.00 35.13 5.68
2729 2806 1.531149 GTGTGTGCATCATATACGCCC 59.469 52.381 0.00 0.00 0.00 6.13
2730 2807 1.139853 TGTGTGCATCATATACGCCCA 59.860 47.619 0.00 0.00 0.00 5.36
2731 2808 2.224499 TGTGTGCATCATATACGCCCAT 60.224 45.455 0.00 0.00 0.00 4.00
2732 2809 2.813754 GTGTGCATCATATACGCCCATT 59.186 45.455 0.00 0.00 0.00 3.16
2733 2810 2.813172 TGTGCATCATATACGCCCATTG 59.187 45.455 0.00 0.00 0.00 2.82
2734 2811 2.813754 GTGCATCATATACGCCCATTGT 59.186 45.455 0.00 0.00 0.00 2.71
2735 2812 2.813172 TGCATCATATACGCCCATTGTG 59.187 45.455 0.00 0.00 0.00 3.33
2736 2813 2.813754 GCATCATATACGCCCATTGTGT 59.186 45.455 0.00 0.00 41.55 3.72
2737 2814 3.253188 GCATCATATACGCCCATTGTGTT 59.747 43.478 0.00 0.00 38.91 3.32
2738 2815 4.786507 CATCATATACGCCCATTGTGTTG 58.213 43.478 0.00 0.00 38.91 3.33
2739 2816 4.143986 TCATATACGCCCATTGTGTTGA 57.856 40.909 0.00 0.00 38.91 3.18
2740 2817 4.713553 TCATATACGCCCATTGTGTTGAT 58.286 39.130 0.00 0.00 38.91 2.57
2741 2818 4.754618 TCATATACGCCCATTGTGTTGATC 59.245 41.667 0.00 0.00 38.91 2.92
2742 2819 2.481289 TACGCCCATTGTGTTGATCA 57.519 45.000 0.00 0.00 38.91 2.92
2743 2820 1.838112 ACGCCCATTGTGTTGATCAT 58.162 45.000 0.00 0.00 32.53 2.45
2744 2821 1.745087 ACGCCCATTGTGTTGATCATC 59.255 47.619 0.00 0.00 32.53 2.92
2745 2822 1.066002 CGCCCATTGTGTTGATCATCC 59.934 52.381 0.00 0.00 0.00 3.51
2746 2823 2.381911 GCCCATTGTGTTGATCATCCT 58.618 47.619 0.00 0.00 0.00 3.24
2747 2824 2.360165 GCCCATTGTGTTGATCATCCTC 59.640 50.000 0.00 0.00 0.00 3.71
2748 2825 3.623703 CCCATTGTGTTGATCATCCTCA 58.376 45.455 0.00 0.00 0.00 3.86
2749 2826 4.212716 CCCATTGTGTTGATCATCCTCAT 58.787 43.478 0.00 0.00 0.00 2.90
2750 2827 4.037565 CCCATTGTGTTGATCATCCTCATG 59.962 45.833 0.00 0.00 0.00 3.07
2751 2828 4.643334 CCATTGTGTTGATCATCCTCATGT 59.357 41.667 0.00 0.00 0.00 3.21
2752 2829 5.126545 CCATTGTGTTGATCATCCTCATGTT 59.873 40.000 0.00 0.00 0.00 2.71
2753 2830 6.350696 CCATTGTGTTGATCATCCTCATGTTT 60.351 38.462 0.00 0.00 0.00 2.83
2754 2831 7.148035 CCATTGTGTTGATCATCCTCATGTTTA 60.148 37.037 0.00 0.00 0.00 2.01
2755 2832 6.990341 TGTGTTGATCATCCTCATGTTTAG 57.010 37.500 0.00 0.00 0.00 1.85
2756 2833 6.710278 TGTGTTGATCATCCTCATGTTTAGA 58.290 36.000 0.00 0.00 0.00 2.10
2757 2834 7.341030 TGTGTTGATCATCCTCATGTTTAGAT 58.659 34.615 0.00 0.00 0.00 1.98
2758 2835 7.830697 TGTGTTGATCATCCTCATGTTTAGATT 59.169 33.333 0.00 0.00 0.00 2.40
2759 2836 9.330063 GTGTTGATCATCCTCATGTTTAGATTA 57.670 33.333 0.00 0.00 0.00 1.75
2760 2837 9.551734 TGTTGATCATCCTCATGTTTAGATTAG 57.448 33.333 0.00 0.00 0.00 1.73
2761 2838 8.502387 GTTGATCATCCTCATGTTTAGATTAGC 58.498 37.037 0.00 0.00 0.00 3.09
2762 2839 7.738847 TGATCATCCTCATGTTTAGATTAGCA 58.261 34.615 0.00 0.00 0.00 3.49
2763 2840 7.876582 TGATCATCCTCATGTTTAGATTAGCAG 59.123 37.037 0.00 0.00 0.00 4.24
2764 2841 7.129457 TCATCCTCATGTTTAGATTAGCAGT 57.871 36.000 0.00 0.00 0.00 4.40
2765 2842 7.212976 TCATCCTCATGTTTAGATTAGCAGTC 58.787 38.462 0.00 0.00 0.00 3.51
2766 2843 6.544928 TCCTCATGTTTAGATTAGCAGTCA 57.455 37.500 0.00 0.00 0.00 3.41
2767 2844 6.577103 TCCTCATGTTTAGATTAGCAGTCAG 58.423 40.000 0.00 0.00 0.00 3.51
2768 2845 5.236047 CCTCATGTTTAGATTAGCAGTCAGC 59.764 44.000 0.00 0.00 46.19 4.26
2778 2855 3.800628 GCAGTCAGCAATTTGGACC 57.199 52.632 0.00 0.00 44.79 4.46
2779 2856 0.109597 GCAGTCAGCAATTTGGACCG 60.110 55.000 0.00 0.00 44.79 4.79
2780 2857 0.109597 CAGTCAGCAATTTGGACCGC 60.110 55.000 0.00 0.00 31.99 5.68
2781 2858 0.537143 AGTCAGCAATTTGGACCGCA 60.537 50.000 0.00 0.00 31.99 5.69
2782 2859 0.313672 GTCAGCAATTTGGACCGCAA 59.686 50.000 0.00 0.00 0.00 4.85
2783 2860 0.313672 TCAGCAATTTGGACCGCAAC 59.686 50.000 0.00 0.00 0.00 4.17
2784 2861 0.031857 CAGCAATTTGGACCGCAACA 59.968 50.000 0.00 0.00 0.00 3.33
2785 2862 0.749649 AGCAATTTGGACCGCAACAA 59.250 45.000 0.00 0.00 0.00 2.83
2786 2863 0.858583 GCAATTTGGACCGCAACAAC 59.141 50.000 0.00 0.00 0.00 3.32
2787 2864 1.537990 GCAATTTGGACCGCAACAACT 60.538 47.619 0.00 0.00 0.00 3.16
2788 2865 2.393764 CAATTTGGACCGCAACAACTC 58.606 47.619 0.00 0.00 0.00 3.01
2789 2866 1.686355 ATTTGGACCGCAACAACTCA 58.314 45.000 0.00 0.00 0.00 3.41
2790 2867 1.464734 TTTGGACCGCAACAACTCAA 58.535 45.000 0.00 0.00 0.00 3.02
2791 2868 1.686355 TTGGACCGCAACAACTCAAT 58.314 45.000 0.00 0.00 0.00 2.57
2792 2869 0.950836 TGGACCGCAACAACTCAATG 59.049 50.000 0.00 0.00 0.00 2.82
2793 2870 0.951558 GGACCGCAACAACTCAATGT 59.048 50.000 0.00 0.00 34.24 2.71
2794 2871 2.147958 GGACCGCAACAACTCAATGTA 58.852 47.619 0.00 0.00 32.02 2.29
2795 2872 2.095919 GGACCGCAACAACTCAATGTAC 60.096 50.000 0.00 0.00 32.02 2.90
2796 2873 2.546368 GACCGCAACAACTCAATGTACA 59.454 45.455 0.00 0.00 32.02 2.90
2797 2874 3.146066 ACCGCAACAACTCAATGTACAT 58.854 40.909 1.41 1.41 32.02 2.29
2798 2875 3.568007 ACCGCAACAACTCAATGTACATT 59.432 39.130 15.47 15.47 32.02 2.71
2799 2876 4.757657 ACCGCAACAACTCAATGTACATTA 59.242 37.500 20.39 8.74 32.02 1.90
2800 2877 5.239744 ACCGCAACAACTCAATGTACATTAA 59.760 36.000 20.39 5.98 32.02 1.40
2801 2878 5.794945 CCGCAACAACTCAATGTACATTAAG 59.205 40.000 20.39 18.08 32.02 1.85
2802 2879 6.370593 CGCAACAACTCAATGTACATTAAGT 58.629 36.000 17.25 17.25 30.76 2.24
2803 2880 6.303022 CGCAACAACTCAATGTACATTAAGTG 59.697 38.462 22.43 17.91 30.02 3.16
2804 2881 7.359595 GCAACAACTCAATGTACATTAAGTGA 58.640 34.615 22.43 14.71 30.02 3.41
2805 2882 7.535258 GCAACAACTCAATGTACATTAAGTGAG 59.465 37.037 22.43 23.45 30.02 3.51
2806 2883 7.672983 ACAACTCAATGTACATTAAGTGAGG 57.327 36.000 27.19 20.29 30.02 3.86
2807 2884 7.450074 ACAACTCAATGTACATTAAGTGAGGA 58.550 34.615 27.19 16.52 30.02 3.71
2808 2885 8.103305 ACAACTCAATGTACATTAAGTGAGGAT 58.897 33.333 27.19 18.06 30.02 3.24
2809 2886 9.599866 CAACTCAATGTACATTAAGTGAGGATA 57.400 33.333 27.19 3.11 30.02 2.59
2811 2888 9.988815 ACTCAATGTACATTAAGTGAGGATATC 57.011 33.333 27.19 0.00 28.46 1.63
2813 2890 9.987272 TCAATGTACATTAAGTGAGGATATCTG 57.013 33.333 20.39 3.97 0.00 2.90
2814 2891 9.987272 CAATGTACATTAAGTGAGGATATCTGA 57.013 33.333 20.39 0.00 0.00 3.27
2816 2893 9.988815 ATGTACATTAAGTGAGGATATCTGAAC 57.011 33.333 1.41 0.00 0.00 3.18
2817 2894 9.201989 TGTACATTAAGTGAGGATATCTGAACT 57.798 33.333 2.05 1.22 0.00 3.01
2820 2897 9.965902 ACATTAAGTGAGGATATCTGAACTTTT 57.034 29.630 16.90 7.77 33.52 2.27
2831 2908 9.803315 GGATATCTGAACTTTTATTTTGAACCC 57.197 33.333 2.05 0.00 0.00 4.11
2848 2925 9.816787 TTTTGAACCCTTATTTATAGTTCCACT 57.183 29.630 0.00 0.00 36.78 4.00
2849 2926 9.457436 TTTGAACCCTTATTTATAGTTCCACTC 57.543 33.333 0.00 0.00 36.78 3.51
2850 2927 8.388656 TGAACCCTTATTTATAGTTCCACTCT 57.611 34.615 0.00 0.00 36.78 3.24
2851 2928 9.496710 TGAACCCTTATTTATAGTTCCACTCTA 57.503 33.333 0.00 0.00 36.78 2.43
2863 2940 6.697641 AGTTCCACTCTATTTAAACTCCCA 57.302 37.500 0.00 0.00 0.00 4.37
2864 2941 7.086685 AGTTCCACTCTATTTAAACTCCCAA 57.913 36.000 0.00 0.00 0.00 4.12
2865 2942 7.523415 AGTTCCACTCTATTTAAACTCCCAAA 58.477 34.615 0.00 0.00 0.00 3.28
2866 2943 7.447545 AGTTCCACTCTATTTAAACTCCCAAAC 59.552 37.037 0.00 0.00 0.00 2.93
2867 2944 5.935789 TCCACTCTATTTAAACTCCCAAACG 59.064 40.000 0.00 0.00 0.00 3.60
2868 2945 5.123344 CCACTCTATTTAAACTCCCAAACGG 59.877 44.000 0.00 0.00 0.00 4.44
2869 2946 5.123344 CACTCTATTTAAACTCCCAAACGGG 59.877 44.000 0.00 0.00 46.35 5.28
2887 2964 2.598686 GGACACTCCCTAACGAATCC 57.401 55.000 0.00 0.00 0.00 3.01
2888 2965 1.202382 GGACACTCCCTAACGAATCCG 60.202 57.143 0.00 0.00 42.50 4.18
2889 2966 1.747355 GACACTCCCTAACGAATCCGA 59.253 52.381 0.00 0.00 39.50 4.55
2890 2967 2.165030 GACACTCCCTAACGAATCCGAA 59.835 50.000 0.00 0.00 39.50 4.30
2891 2968 2.764572 ACACTCCCTAACGAATCCGAAT 59.235 45.455 0.00 0.00 39.50 3.34
2892 2969 3.123804 CACTCCCTAACGAATCCGAATG 58.876 50.000 0.00 0.00 39.50 2.67
2893 2970 3.028850 ACTCCCTAACGAATCCGAATGA 58.971 45.455 0.00 0.00 39.50 2.57
2894 2971 3.641906 ACTCCCTAACGAATCCGAATGAT 59.358 43.478 0.00 0.00 39.50 2.45
2895 2972 4.831155 ACTCCCTAACGAATCCGAATGATA 59.169 41.667 0.00 0.00 39.50 2.15
2896 2973 5.480772 ACTCCCTAACGAATCCGAATGATAT 59.519 40.000 0.00 0.00 39.50 1.63
2897 2974 6.014499 ACTCCCTAACGAATCCGAATGATATT 60.014 38.462 0.00 0.00 39.50 1.28
2898 2975 7.177921 ACTCCCTAACGAATCCGAATGATATTA 59.822 37.037 0.00 0.00 39.50 0.98
2899 2976 8.074613 TCCCTAACGAATCCGAATGATATTAT 57.925 34.615 0.00 0.00 39.50 1.28
2900 2977 8.537016 TCCCTAACGAATCCGAATGATATTATT 58.463 33.333 0.00 0.00 39.50 1.40
2901 2978 9.162764 CCCTAACGAATCCGAATGATATTATTT 57.837 33.333 0.00 0.00 39.50 1.40
2931 3008 3.059188 CACCACTTGTGGCGTTAGTTTAG 60.059 47.826 18.67 0.00 41.52 1.85
2942 3019 5.644206 TGGCGTTAGTTTAGTCATATGCAAA 59.356 36.000 0.00 0.00 0.00 3.68
2976 3053 6.552350 ACAACCTAGAGTACCAAACTACTGAA 59.448 38.462 0.00 0.00 39.07 3.02
2977 3054 7.234988 ACAACCTAGAGTACCAAACTACTGAAT 59.765 37.037 0.00 0.00 39.07 2.57
2978 3055 8.746530 CAACCTAGAGTACCAAACTACTGAATA 58.253 37.037 0.00 0.00 39.07 1.75
2979 3056 8.291191 ACCTAGAGTACCAAACTACTGAATAC 57.709 38.462 0.00 0.00 39.07 1.89
2980 3057 8.114743 ACCTAGAGTACCAAACTACTGAATACT 58.885 37.037 0.00 0.00 39.07 2.12
2981 3058 8.407064 CCTAGAGTACCAAACTACTGAATACTG 58.593 40.741 0.00 0.00 39.07 2.74
2982 3059 9.175312 CTAGAGTACCAAACTACTGAATACTGA 57.825 37.037 0.00 0.00 39.07 3.41
2994 3071 9.920133 ACTACTGAATACTGATATAAGCATGTG 57.080 33.333 0.00 0.00 0.00 3.21
3002 3079 6.179756 ACTGATATAAGCATGTGTTGTGGAA 58.820 36.000 0.00 0.00 0.00 3.53
3035 3112 5.824904 ACAGCCATTTTATTACTGCAGAG 57.175 39.130 23.35 0.00 31.46 3.35
3070 3147 1.327292 CGACGCCGTCAAACAATTGC 61.327 55.000 18.40 0.00 36.45 3.56
3074 3151 1.139163 GCCGTCAAACAATTGCTTGG 58.861 50.000 18.85 6.85 36.64 3.61
3104 3181 1.540707 TGAATGCGACCGTACTACACA 59.459 47.619 0.00 0.00 0.00 3.72
3204 3281 3.181506 CGAAAGCCTTAAGATCCACAAGC 60.182 47.826 3.36 0.00 0.00 4.01
3222 3299 3.616956 AGCGATCCTGACATGAAAAGA 57.383 42.857 0.00 0.00 0.00 2.52
3269 3346 6.015940 GTGGATTGCTCCCTATGGAAAAATAG 60.016 42.308 0.00 0.00 41.17 1.73
3300 3377 1.152881 GAGGGCAATTGCGGAGGAT 60.153 57.895 23.48 5.92 43.26 3.24
3352 3429 4.704965 TGATGAGCAGGATGAAGAAGATG 58.295 43.478 0.00 0.00 39.69 2.90
3567 3644 4.438148 GAAGATTTCCCTACTCAGTGAGC 58.562 47.826 20.31 0.34 32.04 4.26
3573 3650 1.202463 CCCTACTCAGTGAGCGGATTG 60.202 57.143 23.76 9.10 32.04 2.67
3606 3683 9.685276 TTGATGTCCATTTCTACTTACATTGAT 57.315 29.630 0.00 0.00 0.00 2.57
3702 3779 3.000773 GTGCTTTCTTTCACAAACAAGCG 60.001 43.478 0.00 0.00 39.62 4.68
3798 3875 4.156922 ACGTTCCTGACAAAACAATCACAA 59.843 37.500 0.00 0.00 0.00 3.33
3806 3883 5.409826 TGACAAAACAATCACAACAAAACCC 59.590 36.000 0.00 0.00 0.00 4.11
4083 4205 9.277783 AGTGCATCATCATATTTCCTAACTTAC 57.722 33.333 0.00 0.00 0.00 2.34
4260 4405 1.065126 ACAAGGAAGGAGTATGGCAGC 60.065 52.381 0.00 0.00 0.00 5.25
4298 4443 0.740149 CTGCTGGTGTTTGACTTGCA 59.260 50.000 0.00 0.00 33.79 4.08
4679 4876 3.694364 CAGCTGACAACTGGACACT 57.306 52.632 8.42 0.00 0.00 3.55
4682 4879 2.684881 CAGCTGACAACTGGACACTTTT 59.315 45.455 8.42 0.00 0.00 2.27
4756 4953 1.202940 AGAAGAAAGCCAAGGTGGTCC 60.203 52.381 0.00 0.00 40.46 4.46
4776 4973 5.321927 GTCCCACAAGAAAGGAATAAAGGA 58.678 41.667 0.00 0.00 0.00 3.36
4983 5180 0.899717 TCAACCTCAAGGCAATGGGC 60.900 55.000 0.00 0.00 43.74 5.36
5130 5345 2.683362 CGGATCCTTTGACTTTAAGGCC 59.317 50.000 10.75 0.00 41.59 5.19
5187 5402 5.105351 GCCAGCCATACAAGGAATAAAAAGT 60.105 40.000 0.00 0.00 0.00 2.66
5403 5621 1.532868 CGACAGCTTCAACCTTTGGAG 59.467 52.381 0.00 0.00 39.38 3.86
5461 5679 6.961360 TTGAGAGTATAGATGACAACGGAT 57.039 37.500 0.00 0.00 0.00 4.18
5592 5810 1.538629 TCATGTGGAGAGGTGCCCA 60.539 57.895 0.00 0.00 0.00 5.36
5604 5822 1.885871 GTGCCCAAAGCTCCACATC 59.114 57.895 0.00 0.00 44.23 3.06
5768 5998 1.414866 TACCTGCACAACTGCCCTCA 61.415 55.000 0.00 0.00 43.51 3.86
6047 6286 0.108186 CCGGCTGTAGCACATCAAGA 60.108 55.000 6.18 0.00 44.36 3.02
6197 6436 1.341089 GGGCTCCCTTCTAAGGTTTGG 60.341 57.143 7.94 0.00 44.98 3.28
6223 6462 6.590292 TGCAGATTGTTGTTCTTACTAGCTAC 59.410 38.462 0.00 0.00 0.00 3.58
6231 6470 6.452494 TGTTCTTACTAGCTACACAGATCC 57.548 41.667 0.00 0.00 0.00 3.36
6233 6472 6.607600 TGTTCTTACTAGCTACACAGATCCAT 59.392 38.462 0.00 0.00 0.00 3.41
6387 6627 3.041946 ACCTGTTCTCTTCTCACCACTT 58.958 45.455 0.00 0.00 0.00 3.16
6391 6631 5.011125 CCTGTTCTCTTCTCACCACTTCTTA 59.989 44.000 0.00 0.00 0.00 2.10
6408 6648 0.034477 TTAAGCCCTTACCAGCTGCC 60.034 55.000 8.66 0.00 39.87 4.85
6459 6701 2.802247 GCTGCTACATGCGTCATGAATA 59.198 45.455 21.37 7.88 43.81 1.75
6501 6743 3.377172 GGTGTGTTAGCTTGTCTTTGTGT 59.623 43.478 0.00 0.00 0.00 3.72
6521 6763 5.995282 TGTGTGTTAAGCAAGCACTATAGTT 59.005 36.000 1.56 0.00 34.52 2.24
6693 6957 9.534565 TTTCATCTGCTAATAGTGTTCTATCAC 57.465 33.333 0.00 0.00 36.02 3.06
6701 6965 9.765795 GCTAATAGTGTTCTATCACCTAAATGT 57.234 33.333 0.00 0.00 38.91 2.71
6751 7017 7.684529 TCTAGCAGATGTACATCTATCTCAGA 58.315 38.462 32.57 25.85 45.78 3.27
6773 7039 7.823745 AGATGGTGAAACAACTATCTGTTTT 57.176 32.000 2.82 0.00 46.84 2.43
6774 7040 8.237811 AGATGGTGAAACAACTATCTGTTTTT 57.762 30.769 2.82 0.00 46.84 1.94
6821 7087 1.394917 CAGCGTTCTTGCTATCACCAC 59.605 52.381 0.00 0.00 45.23 4.16
6839 7105 3.580458 ACCACAGTGCTTCTAATGAGAGT 59.420 43.478 0.00 0.00 31.77 3.24
6849 7115 9.757227 GTGCTTCTAATGAGAGTAATGAGTAAT 57.243 33.333 0.00 0.00 31.77 1.89
6850 7116 9.755804 TGCTTCTAATGAGAGTAATGAGTAATG 57.244 33.333 0.00 0.00 31.77 1.90
6857 7123 9.737427 AATGAGAGTAATGAGTAATGAGTAACG 57.263 33.333 0.00 0.00 0.00 3.18
6858 7124 8.502105 TGAGAGTAATGAGTAATGAGTAACGA 57.498 34.615 0.00 0.00 0.00 3.85
6859 7125 8.613482 TGAGAGTAATGAGTAATGAGTAACGAG 58.387 37.037 0.00 0.00 0.00 4.18
6860 7126 8.508883 AGAGTAATGAGTAATGAGTAACGAGT 57.491 34.615 0.00 0.00 0.00 4.18
6861 7127 9.610705 AGAGTAATGAGTAATGAGTAACGAGTA 57.389 33.333 0.00 0.00 0.00 2.59
6902 7168 9.997482 GACAAGAACTAACAAAACAGTTTGATA 57.003 29.630 0.00 0.00 45.99 2.15
6929 7207 0.800631 ATATGCATGATTCAGCGGCG 59.199 50.000 10.16 0.51 0.00 6.46
6942 7220 2.202932 CGGCGATTCACCAGAGGG 60.203 66.667 0.00 0.00 41.29 4.30
6943 7221 2.190578 GGCGATTCACCAGAGGGG 59.809 66.667 0.00 0.00 44.81 4.79
7112 7390 1.779025 GCGCATACCATCCAGCACAG 61.779 60.000 0.30 0.00 0.00 3.66
7117 7395 0.983467 TACCATCCAGCACAGCAAGA 59.017 50.000 0.00 0.00 0.00 3.02
7136 7414 9.520204 CAGCAAGAAAATCTGTTTTTAGAAAGA 57.480 29.630 0.00 0.00 37.65 2.52
7190 7468 5.928264 AGTTTTAAGCAAGCAAAGCAATAGG 59.072 36.000 0.00 0.00 0.00 2.57
7212 7490 4.937015 GGACATGCTTATGCCAAATTTGTT 59.063 37.500 16.73 4.40 38.71 2.83
7213 7491 5.063817 GGACATGCTTATGCCAAATTTGTTC 59.936 40.000 16.73 8.74 38.71 3.18
7245 7523 4.990426 GCACCACAAAATGCAAAACTATCT 59.010 37.500 0.00 0.00 41.65 1.98
7253 7531 9.988350 ACAAAATGCAAAACTATCTAGATAACG 57.012 29.630 13.41 5.79 0.00 3.18
7254 7532 8.947940 CAAAATGCAAAACTATCTAGATAACGC 58.052 33.333 13.41 11.23 0.00 4.84
7255 7533 5.883328 TGCAAAACTATCTAGATAACGCG 57.117 39.130 13.41 3.53 0.00 6.01
7256 7534 4.743151 TGCAAAACTATCTAGATAACGCGG 59.257 41.667 12.47 4.44 0.00 6.46
7257 7535 4.150098 GCAAAACTATCTAGATAACGCGGG 59.850 45.833 12.47 0.00 0.00 6.13
7258 7536 5.287226 CAAAACTATCTAGATAACGCGGGT 58.713 41.667 12.47 0.00 0.00 5.28
7259 7537 4.762956 AACTATCTAGATAACGCGGGTC 57.237 45.455 12.47 5.20 0.00 4.46
7260 7538 3.748083 ACTATCTAGATAACGCGGGTCA 58.252 45.455 12.47 0.00 0.00 4.02
7261 7539 4.333690 ACTATCTAGATAACGCGGGTCAT 58.666 43.478 12.47 0.00 0.00 3.06
7262 7540 5.494724 ACTATCTAGATAACGCGGGTCATA 58.505 41.667 12.47 0.00 0.00 2.15
7263 7541 5.942236 ACTATCTAGATAACGCGGGTCATAA 59.058 40.000 12.47 0.00 0.00 1.90
7264 7542 5.717078 ATCTAGATAACGCGGGTCATAAA 57.283 39.130 12.47 0.00 0.00 1.40
7265 7543 5.117355 TCTAGATAACGCGGGTCATAAAG 57.883 43.478 12.47 1.86 0.00 1.85
7266 7544 3.814005 AGATAACGCGGGTCATAAAGT 57.186 42.857 12.47 0.00 0.00 2.66
7267 7545 3.454375 AGATAACGCGGGTCATAAAGTG 58.546 45.455 12.47 0.00 0.00 3.16
7268 7546 2.012937 TAACGCGGGTCATAAAGTGG 57.987 50.000 12.47 0.00 0.00 4.00
7269 7547 0.322322 AACGCGGGTCATAAAGTGGA 59.678 50.000 12.47 0.00 0.00 4.02
7270 7548 0.539986 ACGCGGGTCATAAAGTGGAT 59.460 50.000 12.47 0.00 0.00 3.41
7271 7549 0.937304 CGCGGGTCATAAAGTGGATG 59.063 55.000 0.00 0.00 0.00 3.51
7272 7550 1.472552 CGCGGGTCATAAAGTGGATGA 60.473 52.381 0.00 0.00 0.00 2.92
7273 7551 2.806745 CGCGGGTCATAAAGTGGATGAT 60.807 50.000 0.00 0.00 35.81 2.45
7274 7552 3.554129 CGCGGGTCATAAAGTGGATGATA 60.554 47.826 0.00 0.00 35.81 2.15
7275 7553 3.746492 GCGGGTCATAAAGTGGATGATAC 59.254 47.826 0.00 0.00 35.81 2.24
7276 7554 4.315803 CGGGTCATAAAGTGGATGATACC 58.684 47.826 0.00 0.00 35.81 2.73
7277 7555 4.315803 GGGTCATAAAGTGGATGATACCG 58.684 47.826 0.00 0.00 35.81 4.02
7278 7556 3.746492 GGTCATAAAGTGGATGATACCGC 59.254 47.826 0.00 0.00 35.81 5.68
7279 7557 4.377021 GTCATAAAGTGGATGATACCGCA 58.623 43.478 0.00 0.00 42.22 5.69
7280 7558 4.814234 GTCATAAAGTGGATGATACCGCAA 59.186 41.667 0.00 0.00 42.22 4.85
7281 7559 5.470098 GTCATAAAGTGGATGATACCGCAAT 59.530 40.000 0.00 0.00 42.22 3.56
7282 7560 6.017109 GTCATAAAGTGGATGATACCGCAATT 60.017 38.462 0.00 0.00 42.22 2.32
7283 7561 6.545666 TCATAAAGTGGATGATACCGCAATTT 59.454 34.615 0.00 0.00 42.22 1.82
7284 7562 4.637483 AAGTGGATGATACCGCAATTTG 57.363 40.909 0.00 0.00 42.22 2.32
7285 7563 2.358898 AGTGGATGATACCGCAATTTGC 59.641 45.455 11.42 11.42 42.22 3.68
7286 7564 1.680735 TGGATGATACCGCAATTTGCC 59.319 47.619 15.45 2.01 41.12 4.52
7287 7565 1.680735 GGATGATACCGCAATTTGCCA 59.319 47.619 15.45 7.65 41.12 4.92
7288 7566 2.287788 GGATGATACCGCAATTTGCCAG 60.288 50.000 15.45 9.76 41.12 4.85
7289 7567 2.121291 TGATACCGCAATTTGCCAGA 57.879 45.000 15.45 1.35 41.12 3.86
7290 7568 2.653726 TGATACCGCAATTTGCCAGAT 58.346 42.857 15.45 6.09 41.12 2.90
7291 7569 2.358582 TGATACCGCAATTTGCCAGATG 59.641 45.455 15.45 1.33 41.12 2.90
7292 7570 0.455410 TACCGCAATTTGCCAGATGC 59.545 50.000 15.45 0.00 41.12 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.936496 TGTGAATTACAGCTCCATTGAATTA 57.064 32.000 0.00 0.00 33.42 1.40
13 14 3.445096 GCCTTGTGAATTACAGCTCCATT 59.555 43.478 0.00 0.00 41.10 3.16
15 16 2.436417 GCCTTGTGAATTACAGCTCCA 58.564 47.619 0.00 0.00 41.10 3.86
36 37 8.049592 CGAAACAAAATTACAACACACAAGATG 58.950 33.333 0.00 0.00 0.00 2.90
70 71 8.759641 GCAACATATATCAGACAGAACAACTAG 58.240 37.037 0.00 0.00 0.00 2.57
83 84 8.013947 GCTACTGACAATTGCAACATATATCAG 58.986 37.037 0.00 11.66 37.62 2.90
85 86 8.092521 AGCTACTGACAATTGCAACATATATC 57.907 34.615 0.00 0.00 0.00 1.63
215 217 6.455360 AACCACTAGCAAATCATACATTGG 57.545 37.500 0.00 0.00 0.00 3.16
216 218 7.765307 AGAAACCACTAGCAAATCATACATTG 58.235 34.615 0.00 0.00 0.00 2.82
236 238 8.812329 TGCAAATTGTTACATGTTGTAAGAAAC 58.188 29.630 2.30 0.57 45.17 2.78
246 248 6.147864 ACTTCAGTGCAAATTGTTACATGT 57.852 33.333 2.69 2.69 0.00 3.21
247 249 6.696583 TGAACTTCAGTGCAAATTGTTACATG 59.303 34.615 0.00 0.00 28.73 3.21
261 267 2.223572 GCCCTTTGTGTGAACTTCAGTG 60.224 50.000 0.00 0.00 0.00 3.66
263 269 2.033801 CAGCCCTTTGTGTGAACTTCAG 59.966 50.000 0.00 0.00 0.00 3.02
264 270 2.023673 CAGCCCTTTGTGTGAACTTCA 58.976 47.619 0.00 0.00 0.00 3.02
265 271 2.024414 ACAGCCCTTTGTGTGAACTTC 58.976 47.619 0.00 0.00 0.00 3.01
267 273 2.172717 AGTACAGCCCTTTGTGTGAACT 59.827 45.455 0.00 0.00 32.56 3.01
268 274 2.572290 AGTACAGCCCTTTGTGTGAAC 58.428 47.619 0.00 0.00 32.56 3.18
269 275 3.290948 AAGTACAGCCCTTTGTGTGAA 57.709 42.857 0.00 0.00 32.56 3.18
270 276 3.244422 CCTAAGTACAGCCCTTTGTGTGA 60.244 47.826 0.00 0.00 32.56 3.58
271 277 3.074412 CCTAAGTACAGCCCTTTGTGTG 58.926 50.000 0.00 0.00 32.56 3.82
272 278 2.976882 TCCTAAGTACAGCCCTTTGTGT 59.023 45.455 0.00 0.00 32.56 3.72
273 279 3.695830 TCCTAAGTACAGCCCTTTGTG 57.304 47.619 0.00 0.00 32.56 3.33
274 280 3.908103 TCTTCCTAAGTACAGCCCTTTGT 59.092 43.478 0.00 0.00 35.09 2.83
275 281 4.508662 CTCTTCCTAAGTACAGCCCTTTG 58.491 47.826 0.00 0.00 0.00 2.77
276 282 3.519913 CCTCTTCCTAAGTACAGCCCTTT 59.480 47.826 0.00 0.00 0.00 3.11
277 283 3.108376 CCTCTTCCTAAGTACAGCCCTT 58.892 50.000 0.00 0.00 0.00 3.95
278 284 2.753247 CCTCTTCCTAAGTACAGCCCT 58.247 52.381 0.00 0.00 0.00 5.19
279 285 1.139256 GCCTCTTCCTAAGTACAGCCC 59.861 57.143 0.00 0.00 0.00 5.19
280 286 1.831736 TGCCTCTTCCTAAGTACAGCC 59.168 52.381 0.00 0.00 0.00 4.85
281 287 2.498078 ACTGCCTCTTCCTAAGTACAGC 59.502 50.000 0.00 0.00 31.62 4.40
282 288 5.830991 AGATACTGCCTCTTCCTAAGTACAG 59.169 44.000 0.00 0.00 33.32 2.74
283 289 5.767670 AGATACTGCCTCTTCCTAAGTACA 58.232 41.667 0.00 0.00 0.00 2.90
284 290 7.449086 ACATAGATACTGCCTCTTCCTAAGTAC 59.551 40.741 0.00 0.00 0.00 2.73
285 291 7.527796 ACATAGATACTGCCTCTTCCTAAGTA 58.472 38.462 0.00 0.00 0.00 2.24
286 292 6.377912 ACATAGATACTGCCTCTTCCTAAGT 58.622 40.000 0.00 0.00 0.00 2.24
287 293 6.909550 ACATAGATACTGCCTCTTCCTAAG 57.090 41.667 0.00 0.00 0.00 2.18
288 294 7.344612 TCAAACATAGATACTGCCTCTTCCTAA 59.655 37.037 0.00 0.00 0.00 2.69
289 295 6.839134 TCAAACATAGATACTGCCTCTTCCTA 59.161 38.462 0.00 0.00 0.00 2.94
290 296 5.663106 TCAAACATAGATACTGCCTCTTCCT 59.337 40.000 0.00 0.00 0.00 3.36
291 297 5.918608 TCAAACATAGATACTGCCTCTTCC 58.081 41.667 0.00 0.00 0.00 3.46
292 298 6.810911 TCTCAAACATAGATACTGCCTCTTC 58.189 40.000 0.00 0.00 0.00 2.87
293 299 6.798427 TCTCAAACATAGATACTGCCTCTT 57.202 37.500 0.00 0.00 0.00 2.85
298 304 8.710551 CAGATCATTCTCAAACATAGATACTGC 58.289 37.037 0.00 0.00 0.00 4.40
304 310 6.881570 TCTGCAGATCATTCTCAAACATAGA 58.118 36.000 13.74 0.00 0.00 1.98
332 338 0.320160 GAAAACGCGGTGTACCTCCT 60.320 55.000 12.47 0.00 0.00 3.69
344 350 3.602390 TGCACTTCAGTAAGAAAACGC 57.398 42.857 0.00 0.00 35.40 4.84
346 352 9.937175 GGATTATATGCACTTCAGTAAGAAAAC 57.063 33.333 0.00 0.00 35.40 2.43
362 371 7.088589 ACTTTAATCGCCATGGATTATATGC 57.911 36.000 18.40 0.00 38.36 3.14
376 385 4.561213 GGGCATGTGTTTAACTTTAATCGC 59.439 41.667 0.00 0.00 0.00 4.58
389 404 0.251922 AAGCATCAGGGGCATGTGTT 60.252 50.000 0.00 0.00 0.00 3.32
395 410 0.332293 TCATTCAAGCATCAGGGGCA 59.668 50.000 0.00 0.00 0.00 5.36
438 454 7.726291 TCTTCCTTCTCTTTCTCTCTTTAGACA 59.274 37.037 0.00 0.00 0.00 3.41
450 466 8.678199 TGTTCTTCTTTTTCTTCCTTCTCTTTC 58.322 33.333 0.00 0.00 0.00 2.62
456 472 7.762382 TGTTCTGTTCTTCTTTTTCTTCCTTC 58.238 34.615 0.00 0.00 0.00 3.46
488 504 6.991531 GCTGATCCTCTTTGTGATATCTCTTT 59.008 38.462 3.98 0.00 0.00 2.52
512 528 0.383231 GGTAGACAATGCCATGCTGC 59.617 55.000 0.00 0.00 32.98 5.25
535 551 1.896220 AGCATTGCTTCGTTCCTTGA 58.104 45.000 5.03 0.00 33.89 3.02
562 578 3.806380 TGGCATCATGTTGCTTTTGTTT 58.194 36.364 24.11 0.00 42.38 2.83
584 600 3.512516 GGTGATGGCGCTGGCTTC 61.513 66.667 7.64 0.00 39.81 3.86
592 608 2.890474 GGTGTAGCGGTGATGGCG 60.890 66.667 0.00 0.00 35.00 5.69
593 609 2.513897 GGGTGTAGCGGTGATGGC 60.514 66.667 0.00 0.00 0.00 4.40
596 612 2.718073 GGACGGGTGTAGCGGTGAT 61.718 63.158 0.00 0.00 0.00 3.06
604 620 2.208619 TTTCGGCAGGACGGGTGTA 61.209 57.895 0.00 0.00 0.00 2.90
672 688 7.462571 AAGACAAAAGGAAACTACACTGTTT 57.537 32.000 0.00 0.00 42.68 2.83
676 692 7.114095 TGGTTAAGACAAAAGGAAACTACACT 58.886 34.615 0.00 0.00 42.68 3.55
680 696 8.846211 CATCTTGGTTAAGACAAAAGGAAACTA 58.154 33.333 0.00 0.00 45.17 2.24
687 703 7.118390 ACTCGATCATCTTGGTTAAGACAAAAG 59.882 37.037 0.00 0.00 45.17 2.27
730 746 1.354368 TGTCCCCAAGAAATCCAGTCC 59.646 52.381 0.00 0.00 0.00 3.85
763 779 0.110464 GAAGAACACTTGCAGCGAGC 60.110 55.000 9.87 0.00 45.96 5.03
764 780 0.514691 GGAAGAACACTTGCAGCGAG 59.485 55.000 8.26 8.26 33.32 5.03
767 783 0.595095 CAGGGAAGAACACTTGCAGC 59.405 55.000 0.00 0.00 34.46 5.25
803 819 0.396435 TGCAACTGTGGTACCTCTGG 59.604 55.000 20.68 13.33 0.00 3.86
817 833 7.469260 ACGGATTAAAATGTAGTATGTGCAAC 58.531 34.615 0.00 0.00 37.35 4.17
841 857 7.147976 AGCTGTGAAAACCAATGAGAAAATAC 58.852 34.615 0.00 0.00 0.00 1.89
843 859 6.165700 AGCTGTGAAAACCAATGAGAAAAT 57.834 33.333 0.00 0.00 0.00 1.82
861 877 3.118334 CCTCAATCCTGATCTGAAGCTGT 60.118 47.826 0.38 0.00 0.00 4.40
930 946 4.457949 AGAAACAAATATGTCCAACCCGTC 59.542 41.667 0.00 0.00 39.40 4.79
932 948 4.457603 TGAGAAACAAATATGTCCAACCCG 59.542 41.667 0.00 0.00 39.40 5.28
940 956 7.174946 ACGGAAAGTCATGAGAAACAAATATGT 59.825 33.333 0.00 0.00 43.14 2.29
990 1006 4.571176 GGTTCCCGAGACATATTGAACTTC 59.429 45.833 0.00 0.00 34.15 3.01
1006 1022 1.067582 GGTGCGATCTAGGTTCCCG 59.932 63.158 0.00 0.00 0.00 5.14
1090 1106 0.106918 ACAAGACCGGGTTTCAAGCA 60.107 50.000 6.32 0.00 0.00 3.91
1102 1118 0.604578 ATGCACATGCCAACAAGACC 59.395 50.000 0.49 0.00 41.18 3.85
1132 1148 7.525165 TGGGGATGTAAATGATGATTATGACA 58.475 34.615 0.00 0.00 0.00 3.58
1152 1168 3.108847 ACTTGTTCCTTTTGTTGGGGA 57.891 42.857 0.00 0.00 0.00 4.81
1201 1217 7.011389 CGGTGGCGATGTAAATGATGATTATAT 59.989 37.037 0.00 0.00 0.00 0.86
1208 1224 1.264020 CCGGTGGCGATGTAAATGATG 59.736 52.381 0.00 0.00 0.00 3.07
1209 1225 1.140052 TCCGGTGGCGATGTAAATGAT 59.860 47.619 0.00 0.00 0.00 2.45
1210 1226 0.537653 TCCGGTGGCGATGTAAATGA 59.462 50.000 0.00 0.00 0.00 2.57
1212 1228 0.828022 TCTCCGGTGGCGATGTAAAT 59.172 50.000 0.00 0.00 0.00 1.40
1213 1229 0.108520 GTCTCCGGTGGCGATGTAAA 60.109 55.000 0.00 0.00 0.00 2.01
1214 1230 1.514087 GTCTCCGGTGGCGATGTAA 59.486 57.895 0.00 0.00 0.00 2.41
1215 1231 2.767445 CGTCTCCGGTGGCGATGTA 61.767 63.158 25.21 0.00 0.00 2.29
1216 1232 4.129737 CGTCTCCGGTGGCGATGT 62.130 66.667 25.21 0.00 0.00 3.06
1217 1233 3.822192 TCGTCTCCGGTGGCGATG 61.822 66.667 27.58 12.65 33.95 3.84
1218 1234 3.823330 GTCGTCTCCGGTGGCGAT 61.823 66.667 32.53 0.00 35.78 4.58
1280 1297 2.126071 CGAGAAGGAGCGCCGAAA 60.126 61.111 2.29 0.00 39.96 3.46
1443 1466 0.554792 AAGGGATGCATGGAAGGGAG 59.445 55.000 2.46 0.00 0.00 4.30
1516 1541 0.534412 CGATCTGCTCCACCAGAAGT 59.466 55.000 0.00 0.00 44.34 3.01
1517 1542 0.179089 CCGATCTGCTCCACCAGAAG 60.179 60.000 0.00 0.00 44.34 2.85
1551 1576 2.918802 CCAGCCAAGGCAGCCAAA 60.919 61.111 15.80 0.00 44.88 3.28
1587 1612 1.816224 GAGGAAAGCGGTGCCAAAATA 59.184 47.619 9.14 0.00 0.00 1.40
1588 1613 0.603065 GAGGAAAGCGGTGCCAAAAT 59.397 50.000 9.14 0.00 0.00 1.82
1623 1648 2.183679 GAGTGGAGAGATGGTGTCCTT 58.816 52.381 0.00 0.00 39.52 3.36
1813 1840 3.489785 CCGTCGCCAAGAATATGTAGAAC 59.510 47.826 0.00 0.00 0.00 3.01
1958 1985 4.562347 CCATCTTCAGAGCTGTACTGTTGT 60.562 45.833 0.00 0.00 36.81 3.32
2098 2126 1.812571 CTCGCAGCCAAACCTAACATT 59.187 47.619 0.00 0.00 0.00 2.71
2119 2147 3.201266 TCTGGGCCTAATACCAAACGAAT 59.799 43.478 4.53 0.00 36.09 3.34
2121 2149 2.093341 GTCTGGGCCTAATACCAAACGA 60.093 50.000 4.53 0.00 36.09 3.85
2186 2215 0.809385 CAAAGCCACCATCTGAGCAG 59.191 55.000 0.00 0.00 0.00 4.24
2323 2394 9.298250 CCCAAGCTACACTCTAGTAGATTATAA 57.702 37.037 0.00 0.00 45.79 0.98
2324 2395 7.889073 CCCCAAGCTACACTCTAGTAGATTATA 59.111 40.741 0.00 0.00 45.79 0.98
2325 2396 6.722129 CCCCAAGCTACACTCTAGTAGATTAT 59.278 42.308 0.00 0.00 45.79 1.28
2326 2397 6.069331 CCCCAAGCTACACTCTAGTAGATTA 58.931 44.000 0.00 0.00 45.79 1.75
2328 2399 4.475345 CCCCAAGCTACACTCTAGTAGAT 58.525 47.826 0.00 0.00 43.24 1.98
2329 2400 3.899726 CCCCAAGCTACACTCTAGTAGA 58.100 50.000 5.38 0.00 43.24 2.59
2330 2401 2.362717 GCCCCAAGCTACACTCTAGTAG 59.637 54.545 0.00 0.00 43.39 2.57
2331 2402 2.385803 GCCCCAAGCTACACTCTAGTA 58.614 52.381 0.00 0.00 38.99 1.82
2332 2403 1.196012 GCCCCAAGCTACACTCTAGT 58.804 55.000 0.00 0.00 38.99 2.57
2333 2404 0.466124 GGCCCCAAGCTACACTCTAG 59.534 60.000 0.00 0.00 43.05 2.43
2334 2405 0.042731 AGGCCCCAAGCTACACTCTA 59.957 55.000 0.00 0.00 43.05 2.43
2335 2406 1.229658 AGGCCCCAAGCTACACTCT 60.230 57.895 0.00 0.00 43.05 3.24
2336 2407 1.078143 CAGGCCCCAAGCTACACTC 60.078 63.158 0.00 0.00 43.05 3.51
2378 2449 6.194796 TGTAGAATTTGCTTTATCCACAGC 57.805 37.500 0.00 0.00 36.49 4.40
2434 2505 4.325972 TGAAATGACTGCATCACTAAGCA 58.674 39.130 0.00 0.00 41.24 3.91
2471 2542 6.154534 TGTCAGTTACTAGCTTATCACACCAT 59.845 38.462 0.00 0.00 0.00 3.55
2493 2564 0.727398 GCACCGGCTGTATTTCTGTC 59.273 55.000 0.00 0.00 36.96 3.51
2507 2578 2.008268 GATTCATTGGCCTGGCACCG 62.008 60.000 22.05 5.65 0.00 4.94
2525 2596 2.903784 TGGCTGTGTAAAGCTAGAAGGA 59.096 45.455 0.00 0.00 43.06 3.36
2540 2611 2.512745 TGCGTTCGTTGTGGCTGT 60.513 55.556 0.00 0.00 0.00 4.40
2542 2613 0.037697 TATCTGCGTTCGTTGTGGCT 60.038 50.000 0.00 0.00 0.00 4.75
2550 2621 1.756375 GCCTGCTGTATCTGCGTTCG 61.756 60.000 0.00 0.00 0.00 3.95
2551 2622 0.740868 TGCCTGCTGTATCTGCGTTC 60.741 55.000 0.00 0.00 0.00 3.95
2552 2623 0.321564 TTGCCTGCTGTATCTGCGTT 60.322 50.000 0.00 0.00 0.00 4.84
2554 2625 0.585357 GATTGCCTGCTGTATCTGCG 59.415 55.000 0.00 0.00 0.00 5.18
2555 2626 1.332997 GTGATTGCCTGCTGTATCTGC 59.667 52.381 0.00 0.00 0.00 4.26
2556 2627 2.353889 GTGTGATTGCCTGCTGTATCTG 59.646 50.000 0.00 0.00 0.00 2.90
2557 2628 2.636830 GTGTGATTGCCTGCTGTATCT 58.363 47.619 0.00 0.00 0.00 1.98
2558 2629 1.328680 CGTGTGATTGCCTGCTGTATC 59.671 52.381 0.00 0.00 0.00 2.24
2560 2631 0.320050 TCGTGTGATTGCCTGCTGTA 59.680 50.000 0.00 0.00 0.00 2.74
2562 2633 0.376152 GATCGTGTGATTGCCTGCTG 59.624 55.000 0.00 0.00 34.09 4.41
2565 2636 4.880886 TTTATGATCGTGTGATTGCCTG 57.119 40.909 0.00 0.00 34.09 4.85
2590 2667 1.438651 TGCCTACGCACTCAATTGAC 58.561 50.000 3.38 0.00 41.12 3.18
2606 2683 4.844420 CAGCTACTGCCTAGTGCC 57.156 61.111 0.00 0.00 40.80 5.01
2658 2735 2.613977 GGTCTTCCAGACATGTGGTGAG 60.614 54.545 1.15 2.90 46.79 3.51
2662 2739 2.169352 CCTAGGTCTTCCAGACATGTGG 59.831 54.545 1.15 0.00 46.79 4.17
2663 2740 3.099905 TCCTAGGTCTTCCAGACATGTG 58.900 50.000 1.15 0.00 46.79 3.21
2693 2770 4.736168 GCACACACCTGCTAACAAAATCAA 60.736 41.667 0.00 0.00 34.06 2.57
2700 2777 1.202746 TGATGCACACACCTGCTAACA 60.203 47.619 0.00 0.00 38.07 2.41
2701 2778 1.522668 TGATGCACACACCTGCTAAC 58.477 50.000 0.00 0.00 38.07 2.34
2702 2779 2.495155 ATGATGCACACACCTGCTAA 57.505 45.000 0.00 0.00 38.07 3.09
2703 2780 3.843893 ATATGATGCACACACCTGCTA 57.156 42.857 0.00 0.00 38.07 3.49
2704 2781 2.723322 ATATGATGCACACACCTGCT 57.277 45.000 0.00 0.00 38.07 4.24
2705 2782 2.221749 CGTATATGATGCACACACCTGC 59.778 50.000 0.00 0.00 37.70 4.85
2706 2783 2.221749 GCGTATATGATGCACACACCTG 59.778 50.000 0.00 0.00 40.11 4.00
2707 2784 2.483876 GCGTATATGATGCACACACCT 58.516 47.619 0.00 0.00 40.11 4.00
2708 2785 1.531149 GGCGTATATGATGCACACACC 59.469 52.381 0.00 0.00 42.40 4.16
2709 2786 1.531149 GGGCGTATATGATGCACACAC 59.469 52.381 0.00 0.00 43.65 3.82
2710 2787 1.139853 TGGGCGTATATGATGCACACA 59.860 47.619 0.00 0.00 46.96 3.72
2711 2788 1.877637 TGGGCGTATATGATGCACAC 58.122 50.000 0.00 0.00 46.96 3.82
2713 2790 2.813754 ACAATGGGCGTATATGATGCAC 59.186 45.455 0.00 0.00 44.54 4.57
2714 2791 2.813172 CACAATGGGCGTATATGATGCA 59.187 45.455 0.00 0.00 42.40 3.96
2715 2792 2.813754 ACACAATGGGCGTATATGATGC 59.186 45.455 0.00 0.00 39.59 3.91
2716 2793 4.514816 TCAACACAATGGGCGTATATGATG 59.485 41.667 0.00 0.00 0.00 3.07
2717 2794 4.713553 TCAACACAATGGGCGTATATGAT 58.286 39.130 0.00 0.00 0.00 2.45
2718 2795 4.143986 TCAACACAATGGGCGTATATGA 57.856 40.909 0.00 0.00 0.00 2.15
2719 2796 4.514816 TGATCAACACAATGGGCGTATATG 59.485 41.667 0.00 0.00 0.00 1.78
2720 2797 4.713553 TGATCAACACAATGGGCGTATAT 58.286 39.130 0.00 0.00 0.00 0.86
2721 2798 4.143986 TGATCAACACAATGGGCGTATA 57.856 40.909 0.00 0.00 0.00 1.47
2722 2799 2.997980 TGATCAACACAATGGGCGTAT 58.002 42.857 0.00 0.00 0.00 3.06
2723 2800 2.481289 TGATCAACACAATGGGCGTA 57.519 45.000 0.00 0.00 0.00 4.42
2724 2801 1.745087 GATGATCAACACAATGGGCGT 59.255 47.619 0.00 0.00 0.00 5.68
2725 2802 1.066002 GGATGATCAACACAATGGGCG 59.934 52.381 0.00 0.00 0.00 6.13
2726 2803 2.360165 GAGGATGATCAACACAATGGGC 59.640 50.000 0.00 0.00 0.00 5.36
2727 2804 3.623703 TGAGGATGATCAACACAATGGG 58.376 45.455 0.00 0.00 0.00 4.00
2728 2805 4.643334 ACATGAGGATGATCAACACAATGG 59.357 41.667 0.00 0.00 33.36 3.16
2729 2806 5.830000 ACATGAGGATGATCAACACAATG 57.170 39.130 0.00 4.61 33.36 2.82
2730 2807 6.845758 AAACATGAGGATGATCAACACAAT 57.154 33.333 0.00 0.00 33.36 2.71
2731 2808 7.167535 TCTAAACATGAGGATGATCAACACAA 58.832 34.615 0.00 0.00 33.36 3.33
2732 2809 6.710278 TCTAAACATGAGGATGATCAACACA 58.290 36.000 0.00 1.22 33.36 3.72
2733 2810 7.798596 ATCTAAACATGAGGATGATCAACAC 57.201 36.000 0.00 0.00 33.36 3.32
2734 2811 9.551734 CTAATCTAAACATGAGGATGATCAACA 57.448 33.333 0.00 0.00 33.36 3.33
2735 2812 8.502387 GCTAATCTAAACATGAGGATGATCAAC 58.498 37.037 0.00 0.00 33.36 3.18
2736 2813 8.212995 TGCTAATCTAAACATGAGGATGATCAA 58.787 33.333 0.00 0.00 33.36 2.57
2737 2814 7.738847 TGCTAATCTAAACATGAGGATGATCA 58.261 34.615 0.00 0.00 33.36 2.92
2738 2815 7.877097 ACTGCTAATCTAAACATGAGGATGATC 59.123 37.037 0.00 0.00 33.36 2.92
2739 2816 7.743749 ACTGCTAATCTAAACATGAGGATGAT 58.256 34.615 0.00 0.00 33.36 2.45
2740 2817 7.129457 ACTGCTAATCTAAACATGAGGATGA 57.871 36.000 0.00 0.00 33.36 2.92
2741 2818 6.988580 TGACTGCTAATCTAAACATGAGGATG 59.011 38.462 0.00 0.00 35.49 3.51
2742 2819 7.129457 TGACTGCTAATCTAAACATGAGGAT 57.871 36.000 0.00 0.00 0.00 3.24
2743 2820 6.544928 TGACTGCTAATCTAAACATGAGGA 57.455 37.500 0.00 0.00 0.00 3.71
2744 2821 5.236047 GCTGACTGCTAATCTAAACATGAGG 59.764 44.000 0.00 0.00 38.95 3.86
2745 2822 5.814188 TGCTGACTGCTAATCTAAACATGAG 59.186 40.000 0.00 0.00 43.37 2.90
2746 2823 5.733676 TGCTGACTGCTAATCTAAACATGA 58.266 37.500 0.00 0.00 43.37 3.07
2747 2824 6.426980 TTGCTGACTGCTAATCTAAACATG 57.573 37.500 5.87 0.00 43.37 3.21
2748 2825 7.636150 AATTGCTGACTGCTAATCTAAACAT 57.364 32.000 5.87 0.00 43.37 2.71
2749 2826 7.307694 CAAATTGCTGACTGCTAATCTAAACA 58.692 34.615 5.87 0.00 43.37 2.83
2750 2827 6.749118 CCAAATTGCTGACTGCTAATCTAAAC 59.251 38.462 5.87 0.00 43.37 2.01
2751 2828 6.658816 TCCAAATTGCTGACTGCTAATCTAAA 59.341 34.615 5.87 0.00 43.37 1.85
2752 2829 6.094048 GTCCAAATTGCTGACTGCTAATCTAA 59.906 38.462 5.87 0.00 43.37 2.10
2753 2830 5.586243 GTCCAAATTGCTGACTGCTAATCTA 59.414 40.000 5.87 0.00 43.37 1.98
2754 2831 4.397417 GTCCAAATTGCTGACTGCTAATCT 59.603 41.667 5.87 0.00 43.37 2.40
2755 2832 4.439289 GGTCCAAATTGCTGACTGCTAATC 60.439 45.833 5.87 0.00 43.37 1.75
2756 2833 3.445096 GGTCCAAATTGCTGACTGCTAAT 59.555 43.478 5.87 1.88 43.37 1.73
2757 2834 2.819608 GGTCCAAATTGCTGACTGCTAA 59.180 45.455 5.87 0.00 43.37 3.09
2758 2835 2.436417 GGTCCAAATTGCTGACTGCTA 58.564 47.619 5.87 0.00 43.37 3.49
2759 2836 1.251251 GGTCCAAATTGCTGACTGCT 58.749 50.000 5.87 0.00 43.37 4.24
2760 2837 0.109597 CGGTCCAAATTGCTGACTGC 60.110 55.000 0.00 0.00 43.25 4.40
2761 2838 0.109597 GCGGTCCAAATTGCTGACTG 60.110 55.000 6.78 6.78 38.21 3.51
2762 2839 0.537143 TGCGGTCCAAATTGCTGACT 60.537 50.000 3.19 0.00 0.00 3.41
2763 2840 0.313672 TTGCGGTCCAAATTGCTGAC 59.686 50.000 0.00 0.00 0.00 3.51
2764 2841 0.313672 GTTGCGGTCCAAATTGCTGA 59.686 50.000 0.00 0.00 34.68 4.26
2765 2842 0.031857 TGTTGCGGTCCAAATTGCTG 59.968 50.000 0.00 0.00 34.68 4.41
2766 2843 0.749649 TTGTTGCGGTCCAAATTGCT 59.250 45.000 0.00 0.00 34.68 3.91
2767 2844 0.858583 GTTGTTGCGGTCCAAATTGC 59.141 50.000 0.00 0.00 34.68 3.56
2768 2845 2.223688 TGAGTTGTTGCGGTCCAAATTG 60.224 45.455 0.00 0.00 34.68 2.32
2769 2846 2.028130 TGAGTTGTTGCGGTCCAAATT 58.972 42.857 0.00 0.00 34.68 1.82
2770 2847 1.686355 TGAGTTGTTGCGGTCCAAAT 58.314 45.000 0.00 0.00 34.68 2.32
2771 2848 1.464734 TTGAGTTGTTGCGGTCCAAA 58.535 45.000 0.00 0.00 34.68 3.28
2772 2849 1.336440 CATTGAGTTGTTGCGGTCCAA 59.664 47.619 0.00 0.00 0.00 3.53
2773 2850 0.950836 CATTGAGTTGTTGCGGTCCA 59.049 50.000 0.00 0.00 0.00 4.02
2774 2851 0.951558 ACATTGAGTTGTTGCGGTCC 59.048 50.000 0.00 0.00 0.00 4.46
2775 2852 2.546368 TGTACATTGAGTTGTTGCGGTC 59.454 45.455 0.00 0.00 0.00 4.79
2776 2853 2.566913 TGTACATTGAGTTGTTGCGGT 58.433 42.857 0.00 0.00 0.00 5.68
2777 2854 3.829886 ATGTACATTGAGTTGTTGCGG 57.170 42.857 1.41 0.00 0.00 5.69
2778 2855 6.303022 CACTTAATGTACATTGAGTTGTTGCG 59.697 38.462 32.22 20.81 42.61 4.85
2779 2856 7.359595 TCACTTAATGTACATTGAGTTGTTGC 58.640 34.615 32.22 0.00 42.61 4.17
2780 2857 8.017373 CCTCACTTAATGTACATTGAGTTGTTG 58.983 37.037 32.22 23.85 42.61 3.33
2781 2858 7.936847 TCCTCACTTAATGTACATTGAGTTGTT 59.063 33.333 32.22 16.06 42.61 2.83
2782 2859 7.450074 TCCTCACTTAATGTACATTGAGTTGT 58.550 34.615 32.22 16.97 42.61 3.32
2783 2860 7.905604 TCCTCACTTAATGTACATTGAGTTG 57.094 36.000 32.22 26.88 42.61 3.16
2785 2862 9.988815 GATATCCTCACTTAATGTACATTGAGT 57.011 33.333 30.24 30.24 44.99 3.41
2787 2864 9.987272 CAGATATCCTCACTTAATGTACATTGA 57.013 33.333 27.62 19.92 32.50 2.57
2788 2865 9.987272 TCAGATATCCTCACTTAATGTACATTG 57.013 33.333 27.62 16.05 32.50 2.82
2790 2867 9.988815 GTTCAGATATCCTCACTTAATGTACAT 57.011 33.333 1.41 1.41 0.00 2.29
2791 2868 9.201989 AGTTCAGATATCCTCACTTAATGTACA 57.798 33.333 0.00 0.00 0.00 2.90
2794 2871 9.965902 AAAAGTTCAGATATCCTCACTTAATGT 57.034 29.630 10.07 0.00 29.49 2.71
2805 2882 9.803315 GGGTTCAAAATAAAAGTTCAGATATCC 57.197 33.333 0.00 0.00 0.00 2.59
2841 2918 7.572539 CGTTTGGGAGTTTAAATAGAGTGGAAC 60.573 40.741 0.00 0.00 0.00 3.62
2842 2919 6.428771 CGTTTGGGAGTTTAAATAGAGTGGAA 59.571 38.462 0.00 0.00 0.00 3.53
2843 2920 5.935789 CGTTTGGGAGTTTAAATAGAGTGGA 59.064 40.000 0.00 0.00 0.00 4.02
2844 2921 5.123344 CCGTTTGGGAGTTTAAATAGAGTGG 59.877 44.000 0.00 0.00 38.47 4.00
2845 2922 6.178239 CCGTTTGGGAGTTTAAATAGAGTG 57.822 41.667 0.00 0.00 38.47 3.51
2868 2945 1.202382 CGGATTCGTTAGGGAGTGTCC 60.202 57.143 0.00 0.00 35.23 4.02
2869 2946 1.747355 TCGGATTCGTTAGGGAGTGTC 59.253 52.381 0.00 0.00 37.69 3.67
2870 2947 1.843368 TCGGATTCGTTAGGGAGTGT 58.157 50.000 0.00 0.00 37.69 3.55
2871 2948 2.953466 TTCGGATTCGTTAGGGAGTG 57.047 50.000 0.00 0.00 37.69 3.51
2872 2949 3.028850 TCATTCGGATTCGTTAGGGAGT 58.971 45.455 0.00 0.00 37.69 3.85
2873 2950 3.728076 TCATTCGGATTCGTTAGGGAG 57.272 47.619 0.00 0.00 37.69 4.30
2874 2951 5.995565 ATATCATTCGGATTCGTTAGGGA 57.004 39.130 0.00 0.00 37.44 4.20
2875 2952 8.718102 AATAATATCATTCGGATTCGTTAGGG 57.282 34.615 0.00 0.00 37.44 3.53
2884 2961 9.631257 TGCCATCATAAATAATATCATTCGGAT 57.369 29.630 0.00 0.00 40.14 4.18
2885 2962 8.892723 GTGCCATCATAAATAATATCATTCGGA 58.107 33.333 0.00 0.00 0.00 4.55
2886 2963 8.131100 GGTGCCATCATAAATAATATCATTCGG 58.869 37.037 0.00 0.00 0.00 4.30
2887 2964 8.676401 TGGTGCCATCATAAATAATATCATTCG 58.324 33.333 0.00 0.00 0.00 3.34
2888 2965 9.793252 GTGGTGCCATCATAAATAATATCATTC 57.207 33.333 0.00 0.00 0.00 2.67
2889 2966 9.537852 AGTGGTGCCATCATAAATAATATCATT 57.462 29.630 0.00 0.00 0.00 2.57
2890 2967 9.537852 AAGTGGTGCCATCATAAATAATATCAT 57.462 29.630 0.00 0.00 0.00 2.45
2891 2968 8.795513 CAAGTGGTGCCATCATAAATAATATCA 58.204 33.333 0.00 0.00 0.00 2.15
2892 2969 8.796475 ACAAGTGGTGCCATCATAAATAATATC 58.204 33.333 0.00 0.00 0.00 1.63
2893 2970 8.579006 CACAAGTGGTGCCATCATAAATAATAT 58.421 33.333 0.00 0.00 41.36 1.28
2894 2971 7.014134 CCACAAGTGGTGCCATCATAAATAATA 59.986 37.037 11.08 0.00 46.50 0.98
2895 2972 6.183360 CCACAAGTGGTGCCATCATAAATAAT 60.183 38.462 11.08 0.00 46.50 1.28
2896 2973 5.126869 CCACAAGTGGTGCCATCATAAATAA 59.873 40.000 11.08 0.00 46.50 1.40
2897 2974 4.644234 CCACAAGTGGTGCCATCATAAATA 59.356 41.667 11.08 0.00 46.50 1.40
2898 2975 3.448301 CCACAAGTGGTGCCATCATAAAT 59.552 43.478 11.08 0.00 46.50 1.40
2899 2976 2.824936 CCACAAGTGGTGCCATCATAAA 59.175 45.455 11.08 0.00 46.50 1.40
2900 2977 2.445427 CCACAAGTGGTGCCATCATAA 58.555 47.619 11.08 0.00 46.50 1.90
2901 2978 2.127271 CCACAAGTGGTGCCATCATA 57.873 50.000 11.08 0.00 46.50 2.15
2902 2979 2.965805 CCACAAGTGGTGCCATCAT 58.034 52.632 11.08 0.00 46.50 2.45
2931 3008 7.657761 AGGTTGTACTAGCTATTTGCATATGAC 59.342 37.037 6.97 0.00 45.94 3.06
2942 3019 7.146715 TGGTACTCTAGGTTGTACTAGCTAT 57.853 40.000 15.00 5.34 40.18 2.97
2976 3053 7.508687 TCCACAACACATGCTTATATCAGTAT 58.491 34.615 0.00 0.00 0.00 2.12
2977 3054 6.883744 TCCACAACACATGCTTATATCAGTA 58.116 36.000 0.00 0.00 0.00 2.74
2978 3055 5.744171 TCCACAACACATGCTTATATCAGT 58.256 37.500 0.00 0.00 0.00 3.41
2979 3056 6.317140 ACTTCCACAACACATGCTTATATCAG 59.683 38.462 0.00 0.00 0.00 2.90
2980 3057 6.179756 ACTTCCACAACACATGCTTATATCA 58.820 36.000 0.00 0.00 0.00 2.15
2981 3058 6.316140 TGACTTCCACAACACATGCTTATATC 59.684 38.462 0.00 0.00 0.00 1.63
2982 3059 6.179756 TGACTTCCACAACACATGCTTATAT 58.820 36.000 0.00 0.00 0.00 0.86
2994 3071 6.765989 TGGCTGTTATATATGACTTCCACAAC 59.234 38.462 13.45 1.58 0.00 3.32
3035 3112 1.656095 CGTCGTCAAGATCCTTTGCTC 59.344 52.381 0.00 0.00 0.00 4.26
3070 3147 3.044986 CGCATTCACACAAAAGACCAAG 58.955 45.455 0.00 0.00 0.00 3.61
3074 3151 2.650608 GGTCGCATTCACACAAAAGAC 58.349 47.619 0.00 0.00 0.00 3.01
3104 3181 3.499537 GCAAAATGCTTTAGCTTTGCCTT 59.500 39.130 21.45 5.51 46.98 4.35
3183 3260 3.181506 CGCTTGTGGATCTTAAGGCTTTC 60.182 47.826 4.45 0.00 0.00 2.62
3184 3261 2.749621 CGCTTGTGGATCTTAAGGCTTT 59.250 45.455 4.45 0.00 0.00 3.51
3194 3271 1.134699 TGTCAGGATCGCTTGTGGATC 60.135 52.381 0.00 0.00 39.63 3.36
3204 3281 7.350467 CAATATGTCTTTTCATGTCAGGATCG 58.650 38.462 0.00 0.00 0.00 3.69
3222 3299 6.209986 CCACATGGATAATTCTGCCAATATGT 59.790 38.462 0.00 0.00 37.39 2.29
3269 3346 2.123982 CCCTCTGCATGGCCCTTC 60.124 66.667 0.00 0.00 0.00 3.46
3291 3368 1.073125 TGAAGGTTCAAATCCTCCGCA 59.927 47.619 0.00 0.00 33.55 5.69
3300 3377 4.321899 GCCATTACATGCTGAAGGTTCAAA 60.322 41.667 0.00 0.00 36.64 2.69
3352 3429 5.542251 AGCTCTCATCTACCCCTCTAAAATC 59.458 44.000 0.00 0.00 0.00 2.17
3450 3527 7.240405 TCAATATCTTCATCTCCCCCATAATGT 59.760 37.037 0.00 0.00 0.00 2.71
3496 3573 0.951558 CCAAACGGACCAACTTCAGG 59.048 55.000 0.00 0.00 0.00 3.86
3567 3644 3.627123 TGGACATCAACTTATGCAATCCG 59.373 43.478 0.00 0.00 0.00 4.18
3573 3650 7.559590 AGTAGAAATGGACATCAACTTATGC 57.440 36.000 0.00 0.00 0.00 3.14
3606 3683 2.180086 AGGGCCAGAGTAGATGGTCATA 59.820 50.000 6.18 0.00 44.58 2.15
3798 3875 1.152830 ACCGATGGCTGGGTTTTGT 59.847 52.632 0.00 0.00 30.73 2.83
3964 4041 5.123979 GGTTTTCTCGCTGATTCAAATACCT 59.876 40.000 0.00 0.00 0.00 3.08
4260 4405 3.848726 CAGGTTGGGAAAAATTGATCCG 58.151 45.455 4.23 0.00 36.54 4.18
4390 4584 1.188863 AGCCTTTTCCATGCATGACC 58.811 50.000 28.31 7.51 0.00 4.02
4679 4876 4.706476 CCCTTTGTGGCAGATCTATGAAAA 59.294 41.667 0.00 0.00 0.00 2.29
4682 4879 3.114606 TCCCTTTGTGGCAGATCTATGA 58.885 45.455 0.00 0.00 0.00 2.15
4756 4953 7.951591 TCTTTTCCTTTATTCCTTTCTTGTGG 58.048 34.615 0.00 0.00 0.00 4.17
4762 4959 7.387948 GGCCTTTTCTTTTCCTTTATTCCTTTC 59.612 37.037 0.00 0.00 0.00 2.62
4832 5029 5.923204 TGGCTTTTAATTCCTTTTTCTGCA 58.077 33.333 0.00 0.00 0.00 4.41
4983 5180 1.078848 CTTCCTGAGGCCTGGAACG 60.079 63.158 18.44 11.87 42.93 3.95
5187 5402 5.844516 CCTGGAGGAGTTAGGGTATATTTGA 59.155 44.000 0.00 0.00 37.39 2.69
5403 5621 0.302890 CGCCAATCTCGATGTGCTTC 59.697 55.000 0.00 0.00 0.00 3.86
5592 5810 7.066307 ACATTTAAAAAGGATGTGGAGCTTT 57.934 32.000 0.00 0.00 33.08 3.51
5604 5822 4.202305 TGTGCCCTCCAACATTTAAAAAGG 60.202 41.667 0.00 0.00 0.00 3.11
5768 5998 2.584391 GGGAGGACGAACACCAGCT 61.584 63.158 0.00 0.00 0.00 4.24
6047 6286 1.306654 TCCACCACCGGCTTAGGAT 60.307 57.895 0.00 0.00 34.73 3.24
6106 6345 1.376609 GGGTCATGGCCAACATCGAC 61.377 60.000 20.13 11.59 37.84 4.20
6197 6436 5.409826 AGCTAGTAAGAACAACAATCTGCAC 59.590 40.000 0.00 0.00 0.00 4.57
6223 6462 8.950210 ACTATTTTGACACTTTATGGATCTGTG 58.050 33.333 0.00 0.00 35.09 3.66
6328 6568 4.475135 GCAGGCCGACCTCCCTTC 62.475 72.222 0.00 0.00 46.34 3.46
6387 6627 1.065418 GCAGCTGGTAAGGGCTTAAGA 60.065 52.381 17.12 0.00 36.59 2.10
6391 6631 2.234296 AGGCAGCTGGTAAGGGCTT 61.234 57.895 17.12 0.00 36.59 4.35
6408 6648 5.343058 CACACTTCAAAGTTCAAACACACAG 59.657 40.000 0.00 0.00 37.08 3.66
6493 6735 3.694072 AGTGCTTGCTTAACACACAAAGA 59.306 39.130 0.00 0.00 36.76 2.52
6501 6743 6.757010 GCTAGAACTATAGTGCTTGCTTAACA 59.243 38.462 29.54 7.57 45.16 2.41
6521 6763 2.620251 ACAAGCACACACAAGCTAGA 57.380 45.000 0.00 0.00 40.90 2.43
6586 6850 3.370978 CACTCGCTGAATTTACGGTTCAT 59.629 43.478 0.00 0.00 35.26 2.57
6773 7039 9.725206 AAATAGGGTCTACTCTGTTTATAGGAA 57.275 33.333 3.19 0.00 0.00 3.36
6774 7040 9.725206 AAAATAGGGTCTACTCTGTTTATAGGA 57.275 33.333 5.30 0.00 0.00 2.94
6790 7056 3.426292 GCAAGAACGCTGAAAATAGGGTC 60.426 47.826 0.00 0.00 42.22 4.46
6821 7087 7.264221 ACTCATTACTCTCATTAGAAGCACTG 58.736 38.462 0.00 0.00 0.00 3.66
6839 7105 8.743085 AGGTACTCGTTACTCATTACTCATTA 57.257 34.615 0.00 0.00 0.00 1.90
6849 7115 4.910195 TGGACTAAGGTACTCGTTACTCA 58.090 43.478 0.00 0.00 38.49 3.41
6850 7116 5.645497 TCTTGGACTAAGGTACTCGTTACTC 59.355 44.000 0.00 0.00 38.49 2.59
6855 7121 4.458642 GTCTTCTTGGACTAAGGTACTCGT 59.541 45.833 0.00 0.00 37.01 4.18
6856 7122 4.458295 TGTCTTCTTGGACTAAGGTACTCG 59.542 45.833 0.00 0.00 35.69 4.18
6857 7123 5.979288 TGTCTTCTTGGACTAAGGTACTC 57.021 43.478 0.00 0.00 35.69 2.59
6858 7124 6.075984 TCTTGTCTTCTTGGACTAAGGTACT 58.924 40.000 0.00 0.00 37.43 2.73
6859 7125 6.342338 TCTTGTCTTCTTGGACTAAGGTAC 57.658 41.667 0.00 0.00 37.01 3.34
6860 7126 6.553852 AGTTCTTGTCTTCTTGGACTAAGGTA 59.446 38.462 0.00 0.00 37.01 3.08
6861 7127 5.367060 AGTTCTTGTCTTCTTGGACTAAGGT 59.633 40.000 0.00 0.00 37.01 3.50
6902 7168 6.864685 CCGCTGAATCATGCATATAATGTTTT 59.135 34.615 0.00 0.00 0.00 2.43
6929 7207 2.774234 TCTTCATCCCCTCTGGTGAATC 59.226 50.000 0.00 0.00 35.22 2.52
6942 7220 1.972872 AATCACCGGCATCTTCATCC 58.027 50.000 0.00 0.00 0.00 3.51
6943 7221 2.945008 TGAAATCACCGGCATCTTCATC 59.055 45.455 0.00 0.00 0.00 2.92
7020 7298 0.318445 GGAACTGCACTGCTTTGCTG 60.318 55.000 13.05 13.05 43.41 4.41
7057 7335 1.475280 TGGTCGAACGGAGAACCATAG 59.525 52.381 0.00 0.00 35.59 2.23
7098 7376 0.983467 TCTTGCTGTGCTGGATGGTA 59.017 50.000 0.00 0.00 0.00 3.25
7102 7380 3.192844 CAGATTTTCTTGCTGTGCTGGAT 59.807 43.478 0.00 0.00 0.00 3.41
7164 7442 7.598493 CCTATTGCTTTGCTTGCTTAAAACTTA 59.402 33.333 0.00 0.00 0.00 2.24
7165 7443 6.424812 CCTATTGCTTTGCTTGCTTAAAACTT 59.575 34.615 0.00 0.00 0.00 2.66
7190 7468 5.063817 GGAACAAATTTGGCATAAGCATGTC 59.936 40.000 21.74 2.59 44.61 3.06
7212 7490 1.561643 TTTGTGGTGCAACTTTGGGA 58.438 45.000 2.04 0.00 36.72 4.37
7213 7491 2.393271 TTTTGTGGTGCAACTTTGGG 57.607 45.000 2.04 0.00 36.72 4.12
7224 7502 7.759489 TCTAGATAGTTTTGCATTTTGTGGT 57.241 32.000 0.00 0.00 0.00 4.16
7238 7516 4.139786 TGACCCGCGTTATCTAGATAGTT 58.860 43.478 12.16 0.00 0.00 2.24
7245 7523 4.500205 CCACTTTATGACCCGCGTTATCTA 60.500 45.833 4.92 0.00 0.00 1.98
7251 7529 0.539986 ATCCACTTTATGACCCGCGT 59.460 50.000 4.92 0.00 0.00 6.01
7252 7530 0.937304 CATCCACTTTATGACCCGCG 59.063 55.000 0.00 0.00 0.00 6.46
7253 7531 2.325583 TCATCCACTTTATGACCCGC 57.674 50.000 0.00 0.00 0.00 6.13
7254 7532 4.315803 GGTATCATCCACTTTATGACCCG 58.684 47.826 0.00 0.00 36.24 5.28
7255 7533 4.315803 CGGTATCATCCACTTTATGACCC 58.684 47.826 0.00 0.00 36.24 4.46
7256 7534 3.746492 GCGGTATCATCCACTTTATGACC 59.254 47.826 0.00 0.00 36.24 4.02
7257 7535 4.377021 TGCGGTATCATCCACTTTATGAC 58.623 43.478 0.00 0.00 36.24 3.06
7258 7536 4.681074 TGCGGTATCATCCACTTTATGA 57.319 40.909 0.00 0.00 37.73 2.15
7259 7537 5.947228 ATTGCGGTATCATCCACTTTATG 57.053 39.130 0.00 0.00 0.00 1.90
7260 7538 6.735694 GCAAATTGCGGTATCATCCACTTTAT 60.736 38.462 0.90 0.00 31.71 1.40
7261 7539 5.449862 GCAAATTGCGGTATCATCCACTTTA 60.450 40.000 0.90 0.00 31.71 1.85
7262 7540 4.677779 GCAAATTGCGGTATCATCCACTTT 60.678 41.667 0.90 0.00 31.71 2.66
7263 7541 3.181487 GCAAATTGCGGTATCATCCACTT 60.181 43.478 0.90 0.00 31.71 3.16
7264 7542 2.358898 GCAAATTGCGGTATCATCCACT 59.641 45.455 0.90 0.00 31.71 4.00
7265 7543 2.543653 GGCAAATTGCGGTATCATCCAC 60.544 50.000 12.15 0.00 46.21 4.02
7266 7544 1.680735 GGCAAATTGCGGTATCATCCA 59.319 47.619 12.15 0.00 46.21 3.41
7267 7545 1.680735 TGGCAAATTGCGGTATCATCC 59.319 47.619 12.15 0.00 46.21 3.51
7268 7546 2.618241 TCTGGCAAATTGCGGTATCATC 59.382 45.455 12.15 0.00 46.21 2.92
7269 7547 2.653726 TCTGGCAAATTGCGGTATCAT 58.346 42.857 12.15 0.00 46.21 2.45
7270 7548 2.121291 TCTGGCAAATTGCGGTATCA 57.879 45.000 12.15 2.90 46.21 2.15
7271 7549 2.859806 GCATCTGGCAAATTGCGGTATC 60.860 50.000 12.15 0.00 46.21 2.24
7272 7550 1.067516 GCATCTGGCAAATTGCGGTAT 59.932 47.619 12.15 2.04 46.21 2.73
7273 7551 0.455410 GCATCTGGCAAATTGCGGTA 59.545 50.000 12.15 0.00 46.21 4.02
7274 7552 1.216178 GCATCTGGCAAATTGCGGT 59.784 52.632 12.15 0.00 46.21 5.68
7275 7553 4.097828 GCATCTGGCAAATTGCGG 57.902 55.556 12.15 7.49 46.21 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.