Multiple sequence alignment - TraesCS2B01G049600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G049600 chr2B 100.000 5549 0 0 1 5549 24672971 24678519 0.000000e+00 10248.0
1 TraesCS2B01G049600 chr2B 95.173 663 27 5 1 660 43429026 43428366 0.000000e+00 1042.0
2 TraesCS2B01G049600 chr2B 93.994 666 28 6 1 663 740755617 740754961 0.000000e+00 998.0
3 TraesCS2B01G049600 chr2B 98.361 61 1 0 2962 3022 24675871 24675931 2.110000e-19 108.0
4 TraesCS2B01G049600 chr2B 98.361 61 1 0 2901 2961 24675932 24675992 2.110000e-19 108.0
5 TraesCS2B01G049600 chr2B 81.197 117 16 4 4829 4942 116816825 116816712 7.660000e-14 89.8
6 TraesCS2B01G049600 chr2D 92.144 1884 113 24 2962 4821 13582914 13584786 0.000000e+00 2627.0
7 TraesCS2B01G049600 chr2D 93.396 1484 79 16 1485 2958 13581497 13582971 0.000000e+00 2180.0
8 TraesCS2B01G049600 chr2D 88.362 885 48 26 720 1591 13580609 13581451 0.000000e+00 1013.0
9 TraesCS2B01G049600 chr2D 86.691 541 37 10 4962 5476 13584775 13585306 8.070000e-158 568.0
10 TraesCS2B01G049600 chr2A 93.674 1486 74 15 1484 2961 15625343 15623870 0.000000e+00 2206.0
11 TraesCS2B01G049600 chr2A 91.749 1515 89 18 2962 4466 15623930 15622442 0.000000e+00 2073.0
12 TraesCS2B01G049600 chr2A 85.319 831 73 29 706 1507 15626326 15625516 0.000000e+00 813.0
13 TraesCS2B01G049600 chr2A 82.330 515 57 13 4960 5440 15622028 15621514 3.090000e-112 416.0
14 TraesCS2B01G049600 chr2A 83.918 342 33 15 4507 4837 15622368 15622038 1.940000e-79 307.0
15 TraesCS2B01G049600 chr4B 95.710 676 24 5 1 672 27767857 27767183 0.000000e+00 1083.0
16 TraesCS2B01G049600 chr4B 95.802 667 20 5 1 665 139065115 139064455 0.000000e+00 1070.0
17 TraesCS2B01G049600 chr5B 93.862 668 36 5 1 665 291242186 291242851 0.000000e+00 1002.0
18 TraesCS2B01G049600 chr5B 93.760 657 35 6 3 654 529142097 529142752 0.000000e+00 981.0
19 TraesCS2B01G049600 chr5B 84.642 293 37 6 1320 1607 290437680 290437391 9.100000e-73 285.0
20 TraesCS2B01G049600 chr5B 82.609 115 13 5 4832 4942 521580022 521579911 1.650000e-15 95.3
21 TraesCS2B01G049600 chr5B 82.143 112 14 5 4836 4944 411530052 411529944 2.130000e-14 91.6
22 TraesCS2B01G049600 chr3B 93.572 669 36 4 1 665 306813665 306814330 0.000000e+00 990.0
23 TraesCS2B01G049600 chr3B 95.946 74 2 1 4873 4945 32722970 32723043 9.770000e-23 119.0
24 TraesCS2B01G049600 chr3B 95.946 74 2 1 4873 4945 633539004 633539077 9.770000e-23 119.0
25 TraesCS2B01G049600 chr3B 82.727 110 13 4 4836 4942 157700501 157700607 5.920000e-15 93.5
26 TraesCS2B01G049600 chr6B 93.893 655 36 4 1 652 114885055 114884402 0.000000e+00 985.0
27 TraesCS2B01G049600 chr1B 93.223 664 40 4 1 661 426979243 426979904 0.000000e+00 972.0
28 TraesCS2B01G049600 chr6A 91.453 117 4 2 4834 4944 12879297 12879181 7.440000e-34 156.0
29 TraesCS2B01G049600 chr7D 87.805 123 5 2 4836 4948 161484953 161484831 9.700000e-28 135.0
30 TraesCS2B01G049600 chr7D 96.000 75 2 1 4873 4946 142882686 142882612 2.720000e-23 121.0
31 TraesCS2B01G049600 chrUn 97.222 72 1 1 4873 4943 312816389 312816318 2.720000e-23 121.0
32 TraesCS2B01G049600 chrUn 97.222 72 1 1 4873 4943 312824644 312824715 2.720000e-23 121.0
33 TraesCS2B01G049600 chrUn 97.222 72 1 1 4873 4943 337099084 337099013 2.720000e-23 121.0
34 TraesCS2B01G049600 chrUn 81.739 115 14 5 4832 4942 265597606 265597717 7.660000e-14 89.8
35 TraesCS2B01G049600 chr1D 97.183 71 2 0 4873 4943 264129190 264129120 2.720000e-23 121.0
36 TraesCS2B01G049600 chr7B 82.609 115 13 5 4832 4942 430307753 430307642 1.650000e-15 95.3
37 TraesCS2B01G049600 chr7B 81.197 117 16 4 4829 4942 114594286 114594173 7.660000e-14 89.8
38 TraesCS2B01G049600 chr5A 81.897 116 14 5 4832 4943 456183358 456183246 2.130000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G049600 chr2B 24672971 24678519 5548 False 3488 10248 98.907333 1 5549 3 chr2B.!!$F1 5548
1 TraesCS2B01G049600 chr2B 43428366 43429026 660 True 1042 1042 95.173000 1 660 1 chr2B.!!$R1 659
2 TraesCS2B01G049600 chr2B 740754961 740755617 656 True 998 998 93.994000 1 663 1 chr2B.!!$R3 662
3 TraesCS2B01G049600 chr2D 13580609 13585306 4697 False 1597 2627 90.148250 720 5476 4 chr2D.!!$F1 4756
4 TraesCS2B01G049600 chr2A 15621514 15626326 4812 True 1163 2206 87.398000 706 5440 5 chr2A.!!$R1 4734
5 TraesCS2B01G049600 chr4B 27767183 27767857 674 True 1083 1083 95.710000 1 672 1 chr4B.!!$R1 671
6 TraesCS2B01G049600 chr4B 139064455 139065115 660 True 1070 1070 95.802000 1 665 1 chr4B.!!$R2 664
7 TraesCS2B01G049600 chr5B 291242186 291242851 665 False 1002 1002 93.862000 1 665 1 chr5B.!!$F1 664
8 TraesCS2B01G049600 chr5B 529142097 529142752 655 False 981 981 93.760000 3 654 1 chr5B.!!$F2 651
9 TraesCS2B01G049600 chr3B 306813665 306814330 665 False 990 990 93.572000 1 665 1 chr3B.!!$F3 664
10 TraesCS2B01G049600 chr6B 114884402 114885055 653 True 985 985 93.893000 1 652 1 chr6B.!!$R1 651
11 TraesCS2B01G049600 chr1B 426979243 426979904 661 False 972 972 93.223000 1 661 1 chr1B.!!$F1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 303 0.324738 ATCGTCTCTGAAGGGCTGGA 60.325 55.000 0.00 0.0 0.00 3.86 F
713 724 0.627451 TCATCATGCTTCCCCTTGCT 59.373 50.000 0.00 0.0 0.00 3.91 F
1318 1368 0.175302 ATCTGCTCAGGCTCTTCACG 59.825 55.000 0.00 0.0 39.59 4.35 F
1576 1822 0.178846 TCCCTTCCCTCCCATGACAA 60.179 55.000 0.00 0.0 0.00 3.18 F
2267 2516 0.591170 CCCAAAACTGCCAGTGTACG 59.409 55.000 0.00 0.0 0.00 3.67 F
3569 3828 1.062810 GGAGTCATAGGACAGAGGGGT 60.063 57.143 10.58 0.0 46.80 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1245 1295 0.246086 GGCGGATGAGCATCTAGGAG 59.754 60.0 10.04 0.11 39.27 3.69 R
2145 2391 0.541863 ACCTGTTATCAGCCTTCCCG 59.458 55.0 0.00 0.00 40.09 5.14 R
2455 2709 1.271856 TCTTATTGCCCGACCACAGA 58.728 50.0 0.00 0.00 0.00 3.41 R
3569 3828 0.681733 GGAATCGCATCCTGGCTCTA 59.318 55.0 0.00 0.00 36.50 2.43 R
4127 4391 0.031178 GAAAAGTGTGGGTGCTGCAG 59.969 55.0 10.11 10.11 0.00 4.41 R
5520 5875 0.037697 TCTATGTTGCCTTCGCGTGT 60.038 50.0 5.77 0.00 38.08 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 103 3.868619 TTTGCCTACCCAACTACTTGT 57.131 42.857 0.00 0.00 0.00 3.16
294 303 0.324738 ATCGTCTCTGAAGGGCTGGA 60.325 55.000 0.00 0.00 0.00 3.86
365 375 2.084546 GTTTGCCCTACGAATCTGCTT 58.915 47.619 0.00 0.00 0.00 3.91
412 422 1.291272 GCGACGGAGGTAGGTGTTT 59.709 57.895 0.00 0.00 0.00 2.83
519 530 4.147449 CGGATGGAGCAGTGCGGA 62.147 66.667 10.00 0.00 0.00 5.54
699 710 9.491675 ACAATTTATGCTTTTGACAATTCATCA 57.508 25.926 0.00 0.00 0.00 3.07
702 713 7.528481 TTATGCTTTTGACAATTCATCATGC 57.472 32.000 0.00 0.00 0.00 4.06
703 714 5.142061 TGCTTTTGACAATTCATCATGCT 57.858 34.783 0.00 0.00 0.00 3.79
704 715 5.543714 TGCTTTTGACAATTCATCATGCTT 58.456 33.333 0.00 0.00 0.00 3.91
713 724 0.627451 TCATCATGCTTCCCCTTGCT 59.373 50.000 0.00 0.00 0.00 3.91
718 729 3.091545 TCATGCTTCCCCTTGCTAAAAG 58.908 45.455 0.00 0.00 0.00 2.27
741 752 1.600957 CAAGATATTCCACGCTGCCTG 59.399 52.381 0.00 0.00 0.00 4.85
746 757 4.662961 TCCACGCTGCCTGACACG 62.663 66.667 0.00 0.00 0.00 4.49
819 830 4.494526 CCGAAAAGGAAAAGAAACGACGAA 60.495 41.667 0.00 0.00 45.00 3.85
1071 1121 2.435059 GTCGCTTCCTCCTGCCAC 60.435 66.667 0.00 0.00 0.00 5.01
1072 1122 3.706373 TCGCTTCCTCCTGCCACC 61.706 66.667 0.00 0.00 0.00 4.61
1073 1123 4.020617 CGCTTCCTCCTGCCACCA 62.021 66.667 0.00 0.00 0.00 4.17
1074 1124 2.360475 GCTTCCTCCTGCCACCAC 60.360 66.667 0.00 0.00 0.00 4.16
1119 1169 3.697747 CACGCCGAGGTAACCCCA 61.698 66.667 0.00 0.00 34.66 4.96
1121 1171 4.807039 CGCCGAGGTAACCCCACG 62.807 72.222 0.00 0.00 45.66 4.94
1223 1273 1.591059 CGCCTCTCTCGCTCCATTG 60.591 63.158 0.00 0.00 0.00 2.82
1245 1295 1.557651 GGTCAATACGTTCCTCTCGC 58.442 55.000 0.00 0.00 0.00 5.03
1276 1326 0.534412 CATCCGCCTGACTGTTCTCT 59.466 55.000 0.00 0.00 0.00 3.10
1318 1368 0.175302 ATCTGCTCAGGCTCTTCACG 59.825 55.000 0.00 0.00 39.59 4.35
1344 1394 0.788391 GCTGTACGTTCGTTCCCAAG 59.212 55.000 2.62 0.00 0.00 3.61
1370 1420 7.545265 GCCTGCATTCTTATTATTTGTGACAAA 59.455 33.333 13.66 13.66 0.00 2.83
1380 1430 9.844790 TTATTATTTGTGACAAATCTTGCAGAG 57.155 29.630 25.09 0.00 0.00 3.35
1382 1432 5.581126 TTTGTGACAAATCTTGCAGAGTT 57.419 34.783 6.66 0.00 32.09 3.01
1384 1434 4.454678 TGTGACAAATCTTGCAGAGTTCT 58.545 39.130 0.00 0.00 29.05 3.01
1396 1446 8.169977 TCTTGCAGAGTTCTTGTGAATAATTT 57.830 30.769 0.00 0.00 34.40 1.82
1399 1449 5.574443 GCAGAGTTCTTGTGAATAATTTGGC 59.426 40.000 0.00 0.00 34.40 4.52
1429 1479 4.177026 CGTCTGTTCATTCTGTAGGGAAG 58.823 47.826 0.00 0.00 0.00 3.46
1457 1507 1.298859 ACAGGCCGTTCATCGCTTTC 61.299 55.000 0.00 0.00 38.35 2.62
1471 1521 5.747197 TCATCGCTTTCGTCTTAGGTAATTC 59.253 40.000 0.00 0.00 36.96 2.17
1491 1541 2.305927 TCTTCCCTGCTTTTACTCCCAG 59.694 50.000 0.00 0.00 0.00 4.45
1495 1741 3.019564 CCCTGCTTTTACTCCCAGAATG 58.980 50.000 0.00 0.00 0.00 2.67
1519 1765 3.900601 TGCAGGGTTGGTTTCACATTTAT 59.099 39.130 0.00 0.00 0.00 1.40
1521 1767 5.540337 TGCAGGGTTGGTTTCACATTTATAA 59.460 36.000 0.00 0.00 0.00 0.98
1523 1769 7.102993 GCAGGGTTGGTTTCACATTTATAAAT 58.897 34.615 4.81 4.81 0.00 1.40
1550 1796 6.425114 CCATGCATATCCTGTGTAGAGTAAAC 59.575 42.308 0.00 0.00 0.00 2.01
1553 1799 6.154534 TGCATATCCTGTGTAGAGTAAACTGT 59.845 38.462 0.00 0.00 0.00 3.55
1559 1805 5.401531 TGTGTAGAGTAAACTGTGGATCC 57.598 43.478 4.20 4.20 0.00 3.36
1564 1810 3.519913 AGAGTAAACTGTGGATCCCTTCC 59.480 47.826 9.90 0.00 45.69 3.46
1565 1811 2.576648 AGTAAACTGTGGATCCCTTCCC 59.423 50.000 9.90 0.00 44.77 3.97
1568 1814 0.621862 ACTGTGGATCCCTTCCCTCC 60.622 60.000 9.90 0.00 44.77 4.30
1569 1815 1.307866 TGTGGATCCCTTCCCTCCC 60.308 63.158 9.90 0.00 44.77 4.30
1570 1816 1.307866 GTGGATCCCTTCCCTCCCA 60.308 63.158 9.90 0.00 44.77 4.37
1571 1817 0.699231 GTGGATCCCTTCCCTCCCAT 60.699 60.000 9.90 0.00 44.77 4.00
1572 1818 0.698886 TGGATCCCTTCCCTCCCATG 60.699 60.000 9.90 0.00 44.77 3.66
1573 1819 0.401979 GGATCCCTTCCCTCCCATGA 60.402 60.000 0.00 0.00 38.75 3.07
1574 1820 0.767998 GATCCCTTCCCTCCCATGAC 59.232 60.000 0.00 0.00 0.00 3.06
1576 1822 0.178846 TCCCTTCCCTCCCATGACAA 60.179 55.000 0.00 0.00 0.00 3.18
1577 1823 0.929244 CCCTTCCCTCCCATGACAAT 59.071 55.000 0.00 0.00 0.00 2.71
1578 1824 2.135189 CCCTTCCCTCCCATGACAATA 58.865 52.381 0.00 0.00 0.00 1.90
1622 1868 2.159184 TGTTGTGGCGCTCAAATTTCAA 60.159 40.909 16.88 7.24 0.00 2.69
1623 1869 2.863137 GTTGTGGCGCTCAAATTTCAAA 59.137 40.909 16.88 0.00 0.00 2.69
1632 1878 5.107375 GCGCTCAAATTTCAAATGTTCACAT 60.107 36.000 0.00 0.00 38.41 3.21
1635 1881 7.148705 CGCTCAAATTTCAAATGTTCACATGAT 60.149 33.333 0.00 0.00 36.56 2.45
1746 1992 3.426568 GCTGGTGACCTTCTGCGC 61.427 66.667 2.11 0.00 0.00 6.09
1761 2007 4.457433 TCTGCGCAATGAAATATCTTCG 57.543 40.909 13.05 0.00 0.00 3.79
1783 2029 3.412386 GGCACTGATCATGGGTAATACC 58.588 50.000 0.00 0.00 37.60 2.73
1804 2050 3.055819 CCTCTTTCCGTTCAATCCTCTGA 60.056 47.826 0.00 0.00 0.00 3.27
1805 2051 4.383552 CCTCTTTCCGTTCAATCCTCTGAT 60.384 45.833 0.00 0.00 0.00 2.90
1846 2092 1.137404 GCACATGCATGGTTCGGTC 59.863 57.895 29.41 7.34 41.59 4.79
1854 2100 3.615155 TGCATGGTTCGGTCAATTGATA 58.385 40.909 12.12 0.00 0.00 2.15
1862 2108 5.220662 GGTTCGGTCAATTGATATGTCAGTG 60.221 44.000 12.12 0.00 35.39 3.66
1863 2109 3.871006 TCGGTCAATTGATATGTCAGTGC 59.129 43.478 12.12 0.00 35.39 4.40
1939 2185 6.401394 TGTTCCATCAGAGATAACTGTTGAG 58.599 40.000 2.69 0.00 38.88 3.02
1942 2188 5.188555 TCCATCAGAGATAACTGTTGAGCTT 59.811 40.000 2.69 0.00 38.88 3.74
2155 2401 1.266989 GTTCAGTTTTCGGGAAGGCTG 59.733 52.381 0.00 7.52 0.00 4.85
2185 2431 6.016777 CAGGTGAATCTTCAAGTTTTGTAGCT 60.017 38.462 0.00 0.00 39.21 3.32
2188 2434 7.255277 GGTGAATCTTCAAGTTTTGTAGCTCTT 60.255 37.037 0.00 0.00 39.21 2.85
2189 2435 7.589221 GTGAATCTTCAAGTTTTGTAGCTCTTG 59.411 37.037 0.00 0.00 39.21 3.02
2192 2438 6.112734 TCTTCAAGTTTTGTAGCTCTTGTGA 58.887 36.000 9.61 7.36 38.53 3.58
2267 2516 0.591170 CCCAAAACTGCCAGTGTACG 59.409 55.000 0.00 0.00 0.00 3.67
2298 2547 8.562892 GCAATCAGCAGTTTCTTATGTATGTAT 58.437 33.333 0.00 0.00 44.79 2.29
2528 2782 7.523293 TCATTGTTGTCCACTCAATAATTGT 57.477 32.000 0.00 0.00 37.15 2.71
2706 2960 8.256356 ACTATCTCTGGAGTAAATTGTGCTAT 57.744 34.615 0.00 0.00 0.00 2.97
2707 2961 8.709308 ACTATCTCTGGAGTAAATTGTGCTATT 58.291 33.333 0.00 0.00 0.00 1.73
2904 3162 5.486735 TGGATTGCCACAAATGATTTTCT 57.513 34.783 0.00 0.00 39.92 2.52
2905 3163 5.867330 TGGATTGCCACAAATGATTTTCTT 58.133 33.333 0.00 0.00 39.92 2.52
2906 3164 5.933463 TGGATTGCCACAAATGATTTTCTTC 59.067 36.000 0.00 0.00 39.92 2.87
2907 3165 6.168389 GGATTGCCACAAATGATTTTCTTCT 58.832 36.000 0.00 0.00 0.00 2.85
2908 3166 6.652062 GGATTGCCACAAATGATTTTCTTCTT 59.348 34.615 0.00 0.00 0.00 2.52
2909 3167 7.148523 GGATTGCCACAAATGATTTTCTTCTTC 60.149 37.037 0.00 0.00 0.00 2.87
2910 3168 6.159299 TGCCACAAATGATTTTCTTCTTCA 57.841 33.333 0.00 0.00 0.00 3.02
2911 3169 6.761312 TGCCACAAATGATTTTCTTCTTCAT 58.239 32.000 0.00 0.00 0.00 2.57
2912 3170 7.894708 TGCCACAAATGATTTTCTTCTTCATA 58.105 30.769 0.00 0.00 30.17 2.15
2913 3171 8.533657 TGCCACAAATGATTTTCTTCTTCATAT 58.466 29.630 0.00 0.00 30.17 1.78
2914 3172 8.814235 GCCACAAATGATTTTCTTCTTCATATG 58.186 33.333 0.00 0.00 30.17 1.78
2915 3173 9.865321 CCACAAATGATTTTCTTCTTCATATGT 57.135 29.630 1.90 0.00 30.17 2.29
2939 3197 9.559732 TGTCATCTAAATTGAAGAGAAGAAACA 57.440 29.630 0.00 0.00 0.00 2.83
2940 3198 9.818796 GTCATCTAAATTGAAGAGAAGAAACAC 57.181 33.333 0.00 0.00 0.00 3.32
2941 3199 9.784531 TCATCTAAATTGAAGAGAAGAAACACT 57.215 29.630 0.00 0.00 0.00 3.55
2948 3206 9.784531 AATTGAAGAGAAGAAACACTAATCTCA 57.215 29.630 0.00 0.00 35.87 3.27
2949 3207 9.956640 ATTGAAGAGAAGAAACACTAATCTCAT 57.043 29.630 0.00 0.00 35.87 2.90
2950 3208 8.994429 TGAAGAGAAGAAACACTAATCTCATC 57.006 34.615 0.00 0.00 35.87 2.92
2951 3209 8.588472 TGAAGAGAAGAAACACTAATCTCATCA 58.412 33.333 5.27 5.27 37.62 3.07
2952 3210 9.086336 GAAGAGAAGAAACACTAATCTCATCAG 57.914 37.037 0.00 0.00 35.87 2.90
2953 3211 8.133024 AGAGAAGAAACACTAATCTCATCAGT 57.867 34.615 0.00 0.00 35.87 3.41
2954 3212 8.034215 AGAGAAGAAACACTAATCTCATCAGTG 58.966 37.037 0.00 0.00 44.20 3.66
3041 3299 4.621510 GCTCGTGCATATCATAATGGGAGA 60.622 45.833 4.26 0.00 39.41 3.71
3044 3302 6.108687 TCGTGCATATCATAATGGGAGATTC 58.891 40.000 0.00 0.00 0.00 2.52
3363 3622 7.986889 ACCTTTACTTTTTGACATGCATTTTCT 59.013 29.630 0.00 0.00 0.00 2.52
3415 3674 9.096823 TCTACCCTTTGTTCTAGAAGTTGATTA 57.903 33.333 5.12 0.00 0.00 1.75
3460 3719 8.507249 CAGCATTAAACTATACCTGGCTTATTC 58.493 37.037 0.00 0.00 0.00 1.75
3469 3728 4.640771 ACCTGGCTTATTCTCTTGAACA 57.359 40.909 0.00 0.00 34.71 3.18
3471 3730 4.946157 ACCTGGCTTATTCTCTTGAACATG 59.054 41.667 0.00 0.00 34.71 3.21
3515 3774 5.253330 TCAGAAACCTCAAACATATGGGTC 58.747 41.667 7.80 0.00 0.00 4.46
3519 3778 2.919602 ACCTCAAACATATGGGTCACCT 59.080 45.455 7.80 0.00 37.76 4.00
3521 3780 4.538490 ACCTCAAACATATGGGTCACCTAA 59.462 41.667 7.80 0.00 37.76 2.69
3547 3806 9.998752 AGTATAAATAGCAGGATAGTATGTCCT 57.001 33.333 0.00 0.00 46.92 3.85
3566 3825 2.315176 CTGGGAGTCATAGGACAGAGG 58.685 57.143 10.58 0.00 46.80 3.69
3569 3828 1.062810 GGAGTCATAGGACAGAGGGGT 60.063 57.143 10.58 0.00 46.80 4.95
3592 3851 1.832219 CCAGGATGCGATTCCCTCA 59.168 57.895 0.82 0.00 36.35 3.86
3924 4183 2.733858 GCAGTTCGCAAGTTGTTTTCCA 60.734 45.455 4.48 0.00 41.79 3.53
3956 4215 2.455674 TCCTGATGTTCAAGACACGG 57.544 50.000 0.00 0.00 42.04 4.94
4054 4313 8.132995 TGATTGCTTGCATATCATTTTCTAGTG 58.867 33.333 12.72 0.00 0.00 2.74
4059 4318 6.772360 TGCATATCATTTTCTAGTGCCAAA 57.228 33.333 0.00 0.00 0.00 3.28
4102 4366 8.874156 TCAGTCTTCACATATTTAGCATATCCT 58.126 33.333 0.00 0.00 0.00 3.24
4123 4387 4.962362 CCTAACCCTTCCAATTAAATGCCT 59.038 41.667 0.00 0.00 0.00 4.75
4127 4391 4.405680 ACCCTTCCAATTAAATGCCTAAGC 59.594 41.667 0.00 0.00 40.48 3.09
4168 4433 9.605955 TTTTCAATACATTAACAAGTGATGACG 57.394 29.630 4.48 0.00 0.00 4.35
4181 4447 6.812160 ACAAGTGATGACGAGTTCTTTATACC 59.188 38.462 0.00 0.00 0.00 2.73
4228 4494 2.546778 CCGTCGCTATAAGCAAAAGGA 58.453 47.619 0.00 0.00 42.58 3.36
4252 4522 7.654116 GGATATTGCTTGTAGGTAGAAAGAGAC 59.346 40.741 0.00 0.00 0.00 3.36
4283 4554 3.833650 TGATCCTTGCCATTTGTGTTCAT 59.166 39.130 0.00 0.00 0.00 2.57
4310 4581 6.198966 GTGCACAATAAAGAAAGACAAACTGG 59.801 38.462 13.17 0.00 0.00 4.00
4324 4595 4.453751 ACAAACTGGCAAGCAAAATGAAT 58.546 34.783 0.00 0.00 0.00 2.57
4325 4596 4.273969 ACAAACTGGCAAGCAAAATGAATG 59.726 37.500 0.00 0.00 0.00 2.67
4326 4597 4.339872 AACTGGCAAGCAAAATGAATGA 57.660 36.364 0.00 0.00 0.00 2.57
4327 4598 4.339872 ACTGGCAAGCAAAATGAATGAA 57.660 36.364 0.00 0.00 0.00 2.57
4328 4599 4.060205 ACTGGCAAGCAAAATGAATGAAC 58.940 39.130 0.00 0.00 0.00 3.18
4329 4600 4.059511 CTGGCAAGCAAAATGAATGAACA 58.940 39.130 0.00 0.00 0.00 3.18
4330 4601 4.449131 TGGCAAGCAAAATGAATGAACAA 58.551 34.783 0.00 0.00 0.00 2.83
4339 4610 7.330208 AGCAAAATGAATGAACAAAGTAGCATC 59.670 33.333 0.00 0.00 0.00 3.91
4342 4613 5.300969 TGAATGAACAAAGTAGCATCTGC 57.699 39.130 0.00 0.00 42.49 4.26
4379 4650 1.662686 AAGGAAGAAGAGGTCCAGGG 58.337 55.000 0.00 0.00 36.28 4.45
4386 4657 3.256960 GAGGTCCAGGGGGTTGCA 61.257 66.667 0.00 0.00 34.93 4.08
4391 4662 2.148052 TCCAGGGGGTTGCAACGTA 61.148 57.895 22.67 0.77 34.93 3.57
4394 4665 2.033602 GGGGGTTGCAACGTAGCT 59.966 61.111 22.67 0.00 34.99 3.32
4427 4698 2.657237 CTGACTCGCCGAACCCTT 59.343 61.111 0.00 0.00 0.00 3.95
4428 4699 1.004918 CTGACTCGCCGAACCCTTT 60.005 57.895 0.00 0.00 0.00 3.11
4431 4702 2.345991 CTCGCCGAACCCTTTCCA 59.654 61.111 0.00 0.00 0.00 3.53
4470 4741 3.430895 ACACGTTTGACTAAGCAATACCG 59.569 43.478 0.00 0.00 0.00 4.02
4484 4768 4.040952 AGCAATACCGGCATCTTCTTCTAT 59.959 41.667 0.00 0.00 0.00 1.98
4485 4769 4.390297 GCAATACCGGCATCTTCTTCTATC 59.610 45.833 0.00 0.00 0.00 2.08
4486 4770 5.788450 CAATACCGGCATCTTCTTCTATCT 58.212 41.667 0.00 0.00 0.00 1.98
4489 4773 7.726033 ATACCGGCATCTTCTTCTATCTAAT 57.274 36.000 0.00 0.00 0.00 1.73
4492 4776 8.824756 ACCGGCATCTTCTTCTATCTAATATA 57.175 34.615 0.00 0.00 0.00 0.86
4493 4777 9.256228 ACCGGCATCTTCTTCTATCTAATATAA 57.744 33.333 0.00 0.00 0.00 0.98
4586 4891 4.570874 GCAGGAGCCGGGGGAATC 62.571 72.222 2.18 0.00 33.58 2.52
4590 4895 2.812619 GGAGCCGGGGGAATCAGAG 61.813 68.421 2.18 0.00 0.00 3.35
4614 4919 0.735471 GCCTGGCGGAAATTCTCTTC 59.265 55.000 1.35 0.00 0.00 2.87
4616 4921 1.065126 CCTGGCGGAAATTCTCTTCCT 60.065 52.381 0.00 0.00 42.46 3.36
4617 4922 2.619074 CCTGGCGGAAATTCTCTTCCTT 60.619 50.000 0.00 0.00 42.46 3.36
4620 4925 2.423892 GGCGGAAATTCTCTTCCTTTCC 59.576 50.000 3.71 3.71 42.46 3.13
4623 4928 4.941873 GCGGAAATTCTCTTCCTTTCCTTA 59.058 41.667 10.55 0.00 43.70 2.69
4701 5008 1.606601 GTGAAAACAGAGGGCCCCC 60.607 63.158 21.43 6.71 0.00 5.40
4734 5045 2.301870 CAGCCCGCTATGATAAACCCTA 59.698 50.000 0.00 0.00 0.00 3.53
4747 5058 1.551019 AACCCTAACCCTCACGCTCC 61.551 60.000 0.00 0.00 0.00 4.70
4767 5078 4.617486 TCGCGCGCCACGGTATAG 62.617 66.667 27.95 8.13 43.93 1.31
4775 5086 0.670546 GCCACGGTATAGCGCATGAT 60.671 55.000 23.33 1.92 0.00 2.45
4794 5108 0.180171 TACGCTGGTATGGCAGCAAT 59.820 50.000 0.00 0.00 44.07 3.56
4829 5146 8.893563 ATGATATTTTTCTTCCAACACCCTAA 57.106 30.769 0.00 0.00 0.00 2.69
4830 5147 8.117813 TGATATTTTTCTTCCAACACCCTAAC 57.882 34.615 0.00 0.00 0.00 2.34
4837 5154 8.570068 TTTCTTCCAACACCCTAACAATATAC 57.430 34.615 0.00 0.00 0.00 1.47
4838 5155 7.504926 TCTTCCAACACCCTAACAATATACT 57.495 36.000 0.00 0.00 0.00 2.12
4839 5156 7.562135 TCTTCCAACACCCTAACAATATACTC 58.438 38.462 0.00 0.00 0.00 2.59
4841 5158 5.131475 TCCAACACCCTAACAATATACTCCC 59.869 44.000 0.00 0.00 0.00 4.30
4842 5159 5.132144 CCAACACCCTAACAATATACTCCCT 59.868 44.000 0.00 0.00 0.00 4.20
4846 5163 4.158015 CCCTAACAATATACTCCCTCCGT 58.842 47.826 0.00 0.00 0.00 4.69
4847 5164 4.220163 CCCTAACAATATACTCCCTCCGTC 59.780 50.000 0.00 0.00 0.00 4.79
4848 5165 5.078256 CCTAACAATATACTCCCTCCGTCT 58.922 45.833 0.00 0.00 0.00 4.18
4849 5166 4.939052 AACAATATACTCCCTCCGTCTG 57.061 45.455 0.00 0.00 0.00 3.51
4850 5167 3.231818 ACAATATACTCCCTCCGTCTGG 58.768 50.000 0.00 0.00 0.00 3.86
4851 5168 3.117246 ACAATATACTCCCTCCGTCTGGA 60.117 47.826 0.00 0.00 43.88 3.86
4852 5169 3.895656 CAATATACTCCCTCCGTCTGGAA 59.104 47.826 0.00 0.00 45.87 3.53
4853 5170 2.544844 ATACTCCCTCCGTCTGGAAA 57.455 50.000 0.00 0.00 45.87 3.13
4854 5171 2.544844 TACTCCCTCCGTCTGGAAAT 57.455 50.000 0.00 0.00 45.87 2.17
4855 5172 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
4856 5173 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
4857 5174 2.292323 ACTCCCTCCGTCTGGAAATACT 60.292 50.000 0.00 0.00 45.87 2.12
4858 5175 2.766828 CTCCCTCCGTCTGGAAATACTT 59.233 50.000 0.00 0.00 45.87 2.24
4859 5176 2.500098 TCCCTCCGTCTGGAAATACTTG 59.500 50.000 0.00 0.00 45.87 3.16
4860 5177 2.236395 CCCTCCGTCTGGAAATACTTGT 59.764 50.000 0.00 0.00 45.87 3.16
4861 5178 3.522553 CCTCCGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
4862 5179 3.056107 CCTCCGTCTGGAAATACTTGTCA 60.056 47.826 0.00 0.00 45.87 3.58
4863 5180 4.383118 CCTCCGTCTGGAAATACTTGTCAT 60.383 45.833 0.00 0.00 45.87 3.06
4864 5181 4.755411 TCCGTCTGGAAATACTTGTCATC 58.245 43.478 0.00 0.00 42.85 2.92
4865 5182 4.221924 TCCGTCTGGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 42.85 3.07
4866 5183 4.935205 CCGTCTGGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 37.49 2.57
4867 5184 5.411361 CCGTCTGGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 37.49 2.69
4868 5185 6.072728 CCGTCTGGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 37.49 2.44
4869 5186 7.362056 CCGTCTGGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 37.49 1.82
4870 5187 7.482743 CGTCTGGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
4871 5188 7.756722 GTCTGGAAATACTTGTCATCAAAATGG 59.243 37.037 0.00 0.00 33.42 3.16
4872 5189 6.934056 TGGAAATACTTGTCATCAAAATGGG 58.066 36.000 0.00 0.00 33.42 4.00
4873 5190 6.723515 TGGAAATACTTGTCATCAAAATGGGA 59.276 34.615 0.00 0.00 33.42 4.37
4874 5191 7.035612 GGAAATACTTGTCATCAAAATGGGAC 58.964 38.462 0.00 0.00 33.42 4.46
4875 5192 7.309744 GGAAATACTTGTCATCAAAATGGGACA 60.310 37.037 0.00 0.00 38.41 4.02
4876 5193 7.722949 AATACTTGTCATCAAAATGGGACAT 57.277 32.000 0.00 0.00 39.73 3.06
4877 5194 8.821686 AATACTTGTCATCAAAATGGGACATA 57.178 30.769 0.00 0.00 39.73 2.29
4878 5195 9.425248 AATACTTGTCATCAAAATGGGACATAT 57.575 29.630 0.00 0.00 39.73 1.78
4879 5196 7.722949 ACTTGTCATCAAAATGGGACATATT 57.277 32.000 0.00 0.00 39.73 1.28
4880 5197 8.137745 ACTTGTCATCAAAATGGGACATATTT 57.862 30.769 0.00 0.00 39.73 1.40
4881 5198 8.596293 ACTTGTCATCAAAATGGGACATATTTT 58.404 29.630 0.00 0.00 39.73 1.82
4932 5249 7.922505 TTTTGATGACAAGTATTTTTGGACG 57.077 32.000 0.00 0.00 37.32 4.79
4933 5250 5.621197 TGATGACAAGTATTTTTGGACGG 57.379 39.130 0.00 0.00 32.32 4.79
4934 5251 5.309638 TGATGACAAGTATTTTTGGACGGA 58.690 37.500 0.00 0.00 32.32 4.69
4935 5252 5.411361 TGATGACAAGTATTTTTGGACGGAG 59.589 40.000 0.00 0.00 32.32 4.63
4936 5253 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
4937 5254 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
4938 5255 3.073356 ACAAGTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 32.32 4.20
4939 5256 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
4940 5257 2.910977 AGTATTTTTGGACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
4941 5258 4.098894 AGTATTTTTGGACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
4942 5259 4.720273 AGTATTTTTGGACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
4943 5260 5.901276 AGTATTTTTGGACGGAGGGAGTATA 59.099 40.000 0.00 0.00 0.00 1.47
4944 5261 5.906772 ATTTTTGGACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
4945 5262 4.682778 TTTTGGACGGAGGGAGTATATG 57.317 45.455 0.00 0.00 0.00 1.78
4946 5263 1.629043 TGGACGGAGGGAGTATATGC 58.371 55.000 0.00 0.00 0.00 3.14
4947 5264 0.896226 GGACGGAGGGAGTATATGCC 59.104 60.000 0.00 0.00 40.48 4.40
4953 5270 2.778899 GGGAGTATATGCCTGCCCT 58.221 57.895 6.71 0.00 36.22 5.19
4954 5271 0.326264 GGGAGTATATGCCTGCCCTG 59.674 60.000 6.71 0.00 36.22 4.45
4955 5272 1.059913 GGAGTATATGCCTGCCCTGT 58.940 55.000 0.00 0.00 0.00 4.00
4956 5273 1.421646 GGAGTATATGCCTGCCCTGTT 59.578 52.381 0.00 0.00 0.00 3.16
4957 5274 2.498167 GAGTATATGCCTGCCCTGTTG 58.502 52.381 0.00 0.00 0.00 3.33
4958 5275 1.846439 AGTATATGCCTGCCCTGTTGT 59.154 47.619 0.00 0.00 0.00 3.32
5032 5351 7.710907 TCTGGTGACAATCTGCTATTTGTATAC 59.289 37.037 0.00 0.00 42.06 1.47
5053 5388 1.598130 GGTGAGAACTGCAGGCGTT 60.598 57.895 19.93 3.76 0.00 4.84
5075 5410 7.601775 CGTTCGATAAACTAGTGATTTGACTC 58.398 38.462 0.00 0.00 35.59 3.36
5080 5415 7.010552 CGATAAACTAGTGATTTGACTCAAGGG 59.989 40.741 0.00 0.00 0.00 3.95
5086 5421 5.694995 AGTGATTTGACTCAAGGGAAAAGA 58.305 37.500 0.00 0.00 0.00 2.52
5087 5422 5.767168 AGTGATTTGACTCAAGGGAAAAGAG 59.233 40.000 0.00 0.00 35.56 2.85
5110 5445 8.027771 AGAGAGTGTACGTTTGGATTTAGTTAG 58.972 37.037 0.00 0.00 0.00 2.34
5118 5453 6.017687 ACGTTTGGATTTAGTTAGTGTGAACC 60.018 38.462 0.00 0.00 0.00 3.62
5157 5492 0.320946 TTCTTGACCGGCCGTTTAGG 60.321 55.000 26.12 7.44 44.97 2.69
5158 5493 1.004200 CTTGACCGGCCGTTTAGGT 60.004 57.895 26.12 14.64 43.70 3.08
5159 5494 0.604511 CTTGACCGGCCGTTTAGGTT 60.605 55.000 26.12 0.00 43.70 3.50
5180 5526 5.261661 GTTTAGCTGATGCGATCTTGAAAG 58.738 41.667 0.00 0.00 45.42 2.62
5227 5573 3.521560 CTTGCACGCCAAGTCTAATCTA 58.478 45.455 7.94 0.00 44.74 1.98
5238 5584 5.585047 CCAAGTCTAATCTAAAAACTCCCCG 59.415 44.000 0.00 0.00 0.00 5.73
5240 5586 6.370186 AGTCTAATCTAAAAACTCCCCGTT 57.630 37.500 0.00 0.00 37.47 4.44
5254 5600 2.888414 TCCCCGTTTCCAAAAGATTGTC 59.112 45.455 0.00 0.00 34.60 3.18
5260 5606 5.207768 CGTTTCCAAAAGATTGTCTGTCTG 58.792 41.667 0.00 0.00 34.60 3.51
5342 5697 3.695022 CTTGCAAGCCATGGAGCGC 62.695 63.158 18.40 14.23 38.01 5.92
5377 5732 4.111016 TACAGAGCCGGCGTGTCG 62.111 66.667 32.66 18.90 0.00 4.35
5413 5768 0.389166 GCTGACAGGTGGACTTCTCG 60.389 60.000 4.26 0.00 0.00 4.04
5444 5799 8.056020 CCTCTTTGGATCCTAGGAATGGAACA 62.056 46.154 17.30 5.98 40.53 3.18
5484 5839 2.807895 GCAAAGGCAGCACGCATG 60.808 61.111 0.00 0.00 45.17 4.06
5485 5840 2.956194 CAAAGGCAGCACGCATGA 59.044 55.556 0.00 0.00 45.17 3.07
5486 5841 1.509463 CAAAGGCAGCACGCATGAT 59.491 52.632 0.00 0.00 45.17 2.45
5487 5842 0.108992 CAAAGGCAGCACGCATGATT 60.109 50.000 0.00 0.00 45.17 2.57
5488 5843 0.108992 AAAGGCAGCACGCATGATTG 60.109 50.000 0.00 0.00 45.17 2.67
5489 5844 2.552585 AAGGCAGCACGCATGATTGC 62.553 55.000 10.24 10.24 45.17 3.56
5498 5853 3.611433 GCATGATTGCGAGTGGAAC 57.389 52.632 0.00 0.00 39.49 3.62
5499 5854 0.804364 GCATGATTGCGAGTGGAACA 59.196 50.000 0.00 0.00 38.21 3.18
5514 5869 4.271590 TGGAACACGCGAAATTGATATG 57.728 40.909 15.93 0.00 0.00 1.78
5515 5870 3.935828 TGGAACACGCGAAATTGATATGA 59.064 39.130 15.93 0.00 0.00 2.15
5516 5871 4.393371 TGGAACACGCGAAATTGATATGAA 59.607 37.500 15.93 0.00 0.00 2.57
5517 5872 4.728608 GGAACACGCGAAATTGATATGAAC 59.271 41.667 15.93 0.00 0.00 3.18
5518 5873 4.937696 ACACGCGAAATTGATATGAACA 57.062 36.364 15.93 0.00 0.00 3.18
5519 5874 4.647964 ACACGCGAAATTGATATGAACAC 58.352 39.130 15.93 0.00 0.00 3.32
5520 5875 4.153296 ACACGCGAAATTGATATGAACACA 59.847 37.500 15.93 0.00 0.00 3.72
5521 5876 4.491942 CACGCGAAATTGATATGAACACAC 59.508 41.667 15.93 0.00 0.00 3.82
5522 5877 4.153296 ACGCGAAATTGATATGAACACACA 59.847 37.500 15.93 0.00 0.00 3.72
5523 5878 4.491942 CGCGAAATTGATATGAACACACAC 59.508 41.667 0.00 0.00 0.00 3.82
5524 5879 4.491942 GCGAAATTGATATGAACACACACG 59.508 41.667 0.00 0.00 0.00 4.49
5525 5880 4.491942 CGAAATTGATATGAACACACACGC 59.508 41.667 0.00 0.00 0.00 5.34
5526 5881 3.656651 ATTGATATGAACACACACGCG 57.343 42.857 3.53 3.53 0.00 6.01
5527 5882 2.355717 TGATATGAACACACACGCGA 57.644 45.000 15.93 0.00 0.00 5.87
5528 5883 2.678324 TGATATGAACACACACGCGAA 58.322 42.857 15.93 0.00 0.00 4.70
5529 5884 2.666022 TGATATGAACACACACGCGAAG 59.334 45.455 15.93 7.57 0.00 3.79
5530 5885 1.424403 TATGAACACACACGCGAAGG 58.576 50.000 15.93 4.07 0.00 3.46
5531 5886 1.841663 ATGAACACACACGCGAAGGC 61.842 55.000 15.93 0.00 0.00 4.35
5532 5887 2.512745 AACACACACGCGAAGGCA 60.513 55.556 15.93 0.00 39.92 4.75
5533 5888 2.042520 GAACACACACGCGAAGGCAA 62.043 55.000 15.93 0.00 39.92 4.52
5534 5889 2.052237 CACACACGCGAAGGCAAC 60.052 61.111 15.93 0.00 39.92 4.17
5535 5890 2.512745 ACACACGCGAAGGCAACA 60.513 55.556 15.93 0.00 39.92 3.33
5536 5891 1.891919 ACACACGCGAAGGCAACAT 60.892 52.632 15.93 0.00 39.92 2.71
5537 5892 0.601576 ACACACGCGAAGGCAACATA 60.602 50.000 15.93 0.00 39.92 2.29
5538 5893 0.095245 CACACGCGAAGGCAACATAG 59.905 55.000 15.93 0.00 39.92 2.23
5539 5894 0.037697 ACACGCGAAGGCAACATAGA 60.038 50.000 15.93 0.00 39.92 1.98
5540 5895 1.290203 CACGCGAAGGCAACATAGAT 58.710 50.000 15.93 0.00 39.92 1.98
5541 5896 1.004610 CACGCGAAGGCAACATAGATG 60.005 52.381 15.93 0.00 39.92 2.90
5542 5897 1.134818 ACGCGAAGGCAACATAGATGA 60.135 47.619 15.93 0.00 39.92 2.92
5543 5898 2.138320 CGCGAAGGCAACATAGATGAT 58.862 47.619 0.00 0.00 39.92 2.45
5544 5899 2.156504 CGCGAAGGCAACATAGATGATC 59.843 50.000 0.00 0.00 39.92 2.92
5545 5900 2.156504 GCGAAGGCAACATAGATGATCG 59.843 50.000 0.00 0.00 39.62 3.69
5546 5901 2.156504 CGAAGGCAACATAGATGATCGC 59.843 50.000 0.00 0.00 41.41 4.58
5547 5902 1.788258 AGGCAACATAGATGATCGCG 58.212 50.000 0.00 0.00 41.41 5.87
5548 5903 1.341209 AGGCAACATAGATGATCGCGA 59.659 47.619 13.09 13.09 41.41 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 103 8.974060 AACTTAAGTTCCTAGTTTGATTGACA 57.026 30.769 15.22 0.00 31.64 3.58
314 324 3.661648 CACCCCAACCCTCCCCAG 61.662 72.222 0.00 0.00 0.00 4.45
357 367 2.027837 GCCATGGAAACCAAAGCAGATT 60.028 45.455 18.40 0.00 36.95 2.40
408 418 1.764571 CGTCCCCCACCTCTCAAACA 61.765 60.000 0.00 0.00 0.00 2.83
412 422 1.685765 CATCGTCCCCCACCTCTCA 60.686 63.158 0.00 0.00 0.00 3.27
519 530 4.887190 GGTGTGTGGCAACCCCGT 62.887 66.667 0.00 0.00 35.87 5.28
673 684 9.491675 TGATGAATTGTCAAAAGCATAAATTGT 57.508 25.926 0.00 0.00 37.30 2.71
676 687 8.609176 GCATGATGAATTGTCAAAAGCATAAAT 58.391 29.630 0.00 0.00 37.30 1.40
677 688 7.820386 AGCATGATGAATTGTCAAAAGCATAAA 59.180 29.630 0.00 0.00 37.30 1.40
678 689 7.324935 AGCATGATGAATTGTCAAAAGCATAA 58.675 30.769 0.00 0.00 37.30 1.90
679 690 6.869695 AGCATGATGAATTGTCAAAAGCATA 58.130 32.000 0.00 0.00 37.30 3.14
680 691 5.730550 AGCATGATGAATTGTCAAAAGCAT 58.269 33.333 0.00 0.00 37.30 3.79
681 692 5.142061 AGCATGATGAATTGTCAAAAGCA 57.858 34.783 0.00 0.00 37.30 3.91
682 693 5.063060 GGAAGCATGATGAATTGTCAAAAGC 59.937 40.000 0.00 0.00 37.30 3.51
683 694 5.579511 GGGAAGCATGATGAATTGTCAAAAG 59.420 40.000 0.00 0.00 37.30 2.27
684 695 5.481105 GGGAAGCATGATGAATTGTCAAAA 58.519 37.500 0.00 0.00 37.30 2.44
685 696 4.081531 GGGGAAGCATGATGAATTGTCAAA 60.082 41.667 0.00 0.00 37.30 2.69
686 697 3.448301 GGGGAAGCATGATGAATTGTCAA 59.552 43.478 0.00 0.00 37.30 3.18
687 698 3.025978 GGGGAAGCATGATGAATTGTCA 58.974 45.455 0.00 0.00 38.41 3.58
688 699 3.294214 AGGGGAAGCATGATGAATTGTC 58.706 45.455 0.00 0.00 0.00 3.18
689 700 3.393426 AGGGGAAGCATGATGAATTGT 57.607 42.857 0.00 0.00 0.00 2.71
690 701 3.740141 GCAAGGGGAAGCATGATGAATTG 60.740 47.826 0.00 0.00 0.00 2.32
691 702 2.433239 GCAAGGGGAAGCATGATGAATT 59.567 45.455 0.00 0.00 0.00 2.17
692 703 2.037144 GCAAGGGGAAGCATGATGAAT 58.963 47.619 0.00 0.00 0.00 2.57
693 704 1.006281 AGCAAGGGGAAGCATGATGAA 59.994 47.619 0.00 0.00 0.00 2.57
694 705 0.627451 AGCAAGGGGAAGCATGATGA 59.373 50.000 0.00 0.00 0.00 2.92
695 706 2.353357 TAGCAAGGGGAAGCATGATG 57.647 50.000 0.00 0.00 0.00 3.07
696 707 3.386932 TTTAGCAAGGGGAAGCATGAT 57.613 42.857 0.00 0.00 0.00 2.45
697 708 2.897271 TTTAGCAAGGGGAAGCATGA 57.103 45.000 0.00 0.00 0.00 3.07
698 709 2.417787 GCTTTTAGCAAGGGGAAGCATG 60.418 50.000 0.00 0.00 41.89 4.06
699 710 1.827344 GCTTTTAGCAAGGGGAAGCAT 59.173 47.619 0.00 0.00 41.89 3.79
700 711 1.256812 GCTTTTAGCAAGGGGAAGCA 58.743 50.000 0.00 0.00 41.89 3.91
713 724 4.941263 AGCGTGGAATATCTTGTGCTTTTA 59.059 37.500 0.00 0.00 0.00 1.52
718 729 1.268234 GCAGCGTGGAATATCTTGTGC 60.268 52.381 0.00 0.00 0.00 4.57
746 757 0.388520 AAATGCCTTTTCCGCTTCGC 60.389 50.000 0.00 0.00 0.00 4.70
769 780 6.402550 GCTGCTTCTAATCGATGAAAGTGAAA 60.403 38.462 0.00 0.00 0.00 2.69
770 781 5.063944 GCTGCTTCTAATCGATGAAAGTGAA 59.936 40.000 0.00 0.00 0.00 3.18
771 782 4.568359 GCTGCTTCTAATCGATGAAAGTGA 59.432 41.667 0.00 0.00 0.00 3.41
772 783 4.569966 AGCTGCTTCTAATCGATGAAAGTG 59.430 41.667 0.00 2.88 0.00 3.16
773 784 4.764172 AGCTGCTTCTAATCGATGAAAGT 58.236 39.130 0.00 0.00 0.00 2.66
938 985 0.251634 GACAGAGGAGAAGCAAGGGG 59.748 60.000 0.00 0.00 0.00 4.79
949 996 3.005539 GCAGGGCAGGACAGAGGA 61.006 66.667 0.00 0.00 0.00 3.71
950 997 3.324930 TGCAGGGCAGGACAGAGG 61.325 66.667 0.00 0.00 33.32 3.69
1071 1121 4.275508 AGGTGGTGCTGCTGGTGG 62.276 66.667 0.00 0.00 0.00 4.61
1072 1122 2.670934 GAGGTGGTGCTGCTGGTG 60.671 66.667 0.00 0.00 0.00 4.17
1073 1123 3.958860 GGAGGTGGTGCTGCTGGT 61.959 66.667 0.00 0.00 0.00 4.00
1074 1124 3.618780 GAGGAGGTGGTGCTGCTGG 62.619 68.421 0.00 0.00 0.00 4.85
1223 1273 1.138464 GAGAGGAACGTATTGACCCCC 59.862 57.143 0.00 0.00 0.00 5.40
1245 1295 0.246086 GGCGGATGAGCATCTAGGAG 59.754 60.000 10.04 0.11 39.27 3.69
1296 1346 1.134877 TGAAGAGCCTGAGCAGATTCG 60.135 52.381 0.00 0.00 43.56 3.34
1318 1368 0.807496 ACGAACGTACAGCTAGGGAC 59.193 55.000 0.00 0.00 0.00 4.46
1344 1394 6.563422 TGTCACAAATAATAAGAATGCAGGC 58.437 36.000 0.00 0.00 0.00 4.85
1370 1420 7.934855 ATTATTCACAAGAACTCTGCAAGAT 57.065 32.000 3.37 0.00 37.78 2.40
1372 1422 7.327761 CCAAATTATTCACAAGAACTCTGCAAG 59.672 37.037 0.00 0.00 36.39 4.01
1373 1423 7.147312 CCAAATTATTCACAAGAACTCTGCAA 58.853 34.615 0.00 0.00 36.39 4.08
1380 1430 6.033831 CACATCGCCAAATTATTCACAAGAAC 59.966 38.462 0.00 0.00 36.39 3.01
1382 1432 5.639757 CACATCGCCAAATTATTCACAAGA 58.360 37.500 0.00 0.00 0.00 3.02
1384 1434 4.172505 GCACATCGCCAAATTATTCACAA 58.827 39.130 0.00 0.00 32.94 3.33
1399 1449 1.061131 GAATGAACAGACGGCACATCG 59.939 52.381 0.00 0.00 0.00 3.84
1408 1458 3.935828 GCTTCCCTACAGAATGAACAGAC 59.064 47.826 0.00 0.00 39.69 3.51
1429 1479 4.760047 ACGGCCTGTCACCATCGC 62.760 66.667 0.00 0.00 0.00 4.58
1471 1521 2.305927 TCTGGGAGTAAAAGCAGGGAAG 59.694 50.000 0.00 0.00 0.00 3.46
1491 1541 2.102252 TGAAACCAACCCTGCAACATTC 59.898 45.455 0.00 0.00 0.00 2.67
1495 1741 0.820871 TGTGAAACCAACCCTGCAAC 59.179 50.000 0.00 0.00 34.36 4.17
1519 1765 7.744733 TCTACACAGGATATGCATGGAATTTA 58.255 34.615 10.16 0.00 31.20 1.40
1521 1767 6.183361 ACTCTACACAGGATATGCATGGAATT 60.183 38.462 10.16 0.00 31.20 2.17
1523 1769 4.655649 ACTCTACACAGGATATGCATGGAA 59.344 41.667 10.16 0.00 31.20 3.53
1534 1780 4.476297 TCCACAGTTTACTCTACACAGGA 58.524 43.478 0.00 0.00 0.00 3.86
1559 1805 3.203040 ACTTATTGTCATGGGAGGGAAGG 59.797 47.826 0.00 0.00 0.00 3.46
1564 1810 2.947652 CAGCACTTATTGTCATGGGAGG 59.052 50.000 0.00 0.00 0.00 4.30
1565 1811 3.614092 ACAGCACTTATTGTCATGGGAG 58.386 45.455 0.00 0.00 0.00 4.30
1568 1814 5.375417 TGAAACAGCACTTATTGTCATGG 57.625 39.130 0.00 0.00 0.00 3.66
1569 1815 6.441274 ACTTGAAACAGCACTTATTGTCATG 58.559 36.000 0.00 0.00 0.00 3.07
1570 1816 6.639632 ACTTGAAACAGCACTTATTGTCAT 57.360 33.333 0.00 0.00 0.00 3.06
1571 1817 6.264832 CAACTTGAAACAGCACTTATTGTCA 58.735 36.000 0.00 0.00 0.00 3.58
1572 1818 5.687285 CCAACTTGAAACAGCACTTATTGTC 59.313 40.000 0.00 0.00 0.00 3.18
1573 1819 5.359576 TCCAACTTGAAACAGCACTTATTGT 59.640 36.000 0.00 0.00 0.00 2.71
1574 1820 5.830912 TCCAACTTGAAACAGCACTTATTG 58.169 37.500 0.00 0.00 0.00 1.90
1576 1822 6.040842 ACAATCCAACTTGAAACAGCACTTAT 59.959 34.615 0.00 0.00 0.00 1.73
1577 1823 5.359576 ACAATCCAACTTGAAACAGCACTTA 59.640 36.000 0.00 0.00 0.00 2.24
1578 1824 4.160252 ACAATCCAACTTGAAACAGCACTT 59.840 37.500 0.00 0.00 0.00 3.16
1635 1881 5.012458 CCCTACATGCAGGATCTTGATTAGA 59.988 44.000 14.05 0.00 38.00 2.10
1746 1992 4.576053 TCAGTGCCCGAAGATATTTCATTG 59.424 41.667 0.00 0.00 0.00 2.82
1761 2007 2.664402 ATTACCCATGATCAGTGCCC 57.336 50.000 0.09 0.00 0.00 5.36
1783 2029 4.193826 TCAGAGGATTGAACGGAAAGAG 57.806 45.455 0.00 0.00 0.00 2.85
1804 2050 6.640518 CGTGTGGGTCATTATAAGGCTATAT 58.359 40.000 0.00 0.00 0.00 0.86
1805 2051 5.568023 GCGTGTGGGTCATTATAAGGCTATA 60.568 44.000 0.00 0.00 0.00 1.31
1846 2092 4.794981 GCCATGGCACTGACATATCAATTG 60.795 45.833 32.08 0.00 41.49 2.32
1939 2185 5.693104 TGATTCAATTGCTTTTCTGACAAGC 59.307 36.000 18.97 18.97 45.92 4.01
1942 2188 5.693104 GCTTGATTCAATTGCTTTTCTGACA 59.307 36.000 0.00 0.00 0.00 3.58
2140 2386 3.078837 TGTTATCAGCCTTCCCGAAAAC 58.921 45.455 0.00 0.00 0.00 2.43
2145 2391 0.541863 ACCTGTTATCAGCCTTCCCG 59.458 55.000 0.00 0.00 40.09 5.14
2155 2401 8.352942 ACAAAACTTGAAGATTCACCTGTTATC 58.647 33.333 0.00 0.00 36.83 1.75
2185 2431 8.984764 GTATACACAAATGTTACAGTCACAAGA 58.015 33.333 0.00 0.00 40.48 3.02
2188 2434 8.078959 GTGTATACACAAATGTTACAGTCACA 57.921 34.615 27.37 0.00 45.75 3.58
2445 2697 1.946768 CCGACCACAGAACACACATTT 59.053 47.619 0.00 0.00 0.00 2.32
2446 2698 1.593196 CCGACCACAGAACACACATT 58.407 50.000 0.00 0.00 0.00 2.71
2455 2709 1.271856 TCTTATTGCCCGACCACAGA 58.728 50.000 0.00 0.00 0.00 3.41
2528 2782 9.276590 CCATGCAATCTACATTTATCTGACTAA 57.723 33.333 0.00 0.00 0.00 2.24
2735 2993 9.496873 TCAAGTAAGTTCCGAATAAGAATTGAA 57.503 29.630 0.00 0.00 0.00 2.69
2736 2994 9.667107 ATCAAGTAAGTTCCGAATAAGAATTGA 57.333 29.630 0.00 0.00 0.00 2.57
2913 3171 9.559732 TGTTTCTTCTCTTCAATTTAGATGACA 57.440 29.630 0.00 0.00 0.00 3.58
2914 3172 9.818796 GTGTTTCTTCTCTTCAATTTAGATGAC 57.181 33.333 0.00 0.00 0.00 3.06
2915 3173 9.784531 AGTGTTTCTTCTCTTCAATTTAGATGA 57.215 29.630 0.00 0.00 0.00 2.92
2922 3180 9.784531 TGAGATTAGTGTTTCTTCTCTTCAATT 57.215 29.630 0.00 0.00 33.52 2.32
2923 3181 9.956640 ATGAGATTAGTGTTTCTTCTCTTCAAT 57.043 29.630 0.00 0.00 33.52 2.57
2924 3182 9.429359 GATGAGATTAGTGTTTCTTCTCTTCAA 57.571 33.333 0.00 0.00 35.97 2.69
2925 3183 8.588472 TGATGAGATTAGTGTTTCTTCTCTTCA 58.412 33.333 10.82 10.82 39.33 3.02
2926 3184 8.994429 TGATGAGATTAGTGTTTCTTCTCTTC 57.006 34.615 0.00 0.00 36.19 2.87
2927 3185 8.592809 ACTGATGAGATTAGTGTTTCTTCTCTT 58.407 33.333 0.00 0.00 33.52 2.85
2928 3186 8.034215 CACTGATGAGATTAGTGTTTCTTCTCT 58.966 37.037 0.00 0.00 40.72 3.10
2929 3187 8.183830 CACTGATGAGATTAGTGTTTCTTCTC 57.816 38.462 0.00 0.00 40.72 2.87
2939 3197 7.341769 AGAAAGAGCTACACTGATGAGATTAGT 59.658 37.037 0.00 0.00 0.00 2.24
2940 3198 7.715657 AGAAAGAGCTACACTGATGAGATTAG 58.284 38.462 0.00 0.00 0.00 1.73
2941 3199 7.652524 AGAAAGAGCTACACTGATGAGATTA 57.347 36.000 0.00 0.00 0.00 1.75
2942 3200 6.543430 AGAAAGAGCTACACTGATGAGATT 57.457 37.500 0.00 0.00 0.00 2.40
2943 3201 6.380846 AGAAGAAAGAGCTACACTGATGAGAT 59.619 38.462 0.00 0.00 0.00 2.75
2944 3202 5.714333 AGAAGAAAGAGCTACACTGATGAGA 59.286 40.000 0.00 0.00 0.00 3.27
2945 3203 5.964758 AGAAGAAAGAGCTACACTGATGAG 58.035 41.667 0.00 0.00 0.00 2.90
2946 3204 5.991933 AGAAGAAAGAGCTACACTGATGA 57.008 39.130 0.00 0.00 0.00 2.92
2947 3205 6.162079 TGAAGAAGAAAGAGCTACACTGATG 58.838 40.000 0.00 0.00 0.00 3.07
2948 3206 6.352016 TGAAGAAGAAAGAGCTACACTGAT 57.648 37.500 0.00 0.00 0.00 2.90
2949 3207 5.791336 TGAAGAAGAAAGAGCTACACTGA 57.209 39.130 0.00 0.00 0.00 3.41
2950 3208 7.763528 ACATATGAAGAAGAAAGAGCTACACTG 59.236 37.037 10.38 0.00 0.00 3.66
2951 3209 7.846066 ACATATGAAGAAGAAAGAGCTACACT 58.154 34.615 10.38 0.00 0.00 3.55
2952 3210 7.761704 TGACATATGAAGAAGAAAGAGCTACAC 59.238 37.037 10.38 0.00 0.00 2.90
2953 3211 7.840931 TGACATATGAAGAAGAAAGAGCTACA 58.159 34.615 10.38 0.00 0.00 2.74
2954 3212 8.885494 ATGACATATGAAGAAGAAAGAGCTAC 57.115 34.615 10.38 0.00 0.00 3.58
2955 3213 9.896645 AAATGACATATGAAGAAGAAAGAGCTA 57.103 29.630 10.38 0.00 0.00 3.32
2956 3214 8.804912 AAATGACATATGAAGAAGAAAGAGCT 57.195 30.769 10.38 0.00 0.00 4.09
3019 3277 5.077134 TCTCCCATTATGATATGCACGAG 57.923 43.478 0.00 0.00 0.00 4.18
3415 3674 3.570125 GCTGCACCTTAAGAGACCTTTTT 59.430 43.478 3.36 0.00 33.94 1.94
3422 3681 5.560724 AGTTTAATGCTGCACCTTAAGAGA 58.439 37.500 3.57 0.00 0.00 3.10
3423 3682 5.886960 AGTTTAATGCTGCACCTTAAGAG 57.113 39.130 3.57 0.00 0.00 2.85
3430 3689 4.275936 CCAGGTATAGTTTAATGCTGCACC 59.724 45.833 3.57 0.00 0.00 5.01
3460 3719 5.375417 TGGCATTTGTACATGTTCAAGAG 57.625 39.130 16.12 13.72 0.00 2.85
3500 3759 5.745227 ACTTAGGTGACCCATATGTTTGAG 58.255 41.667 0.00 0.00 0.00 3.02
3521 3780 9.998752 AGGACATACTATCCTGCTATTTATACT 57.001 33.333 0.00 0.00 45.29 2.12
3547 3806 1.062886 CCCTCTGTCCTATGACTCCCA 60.063 57.143 0.00 0.00 42.28 4.37
3552 3811 3.492337 CTCTACCCCTCTGTCCTATGAC 58.508 54.545 0.00 0.00 42.12 3.06
3566 3825 1.476007 ATCGCATCCTGGCTCTACCC 61.476 60.000 0.00 0.00 37.83 3.69
3569 3828 0.681733 GGAATCGCATCCTGGCTCTA 59.318 55.000 0.00 0.00 36.50 2.43
3783 4042 6.909550 AGACATCCTACAGATCCTGAATAC 57.090 41.667 0.45 0.00 35.18 1.89
3947 4206 3.319137 TGAGAGGAATTCCGTGTCTTG 57.681 47.619 18.82 0.00 42.08 3.02
3956 4215 9.853555 CATAGTCACAGTATATGAGAGGAATTC 57.146 37.037 0.00 0.00 0.00 2.17
4082 4346 8.890472 AGGGTTAGGATATGCTAAATATGTGAA 58.110 33.333 17.20 0.00 0.00 3.18
4102 4366 6.097696 GCTTAGGCATTTAATTGGAAGGGTTA 59.902 38.462 0.00 0.00 38.54 2.85
4123 4387 1.600636 GTGTGGGTGCTGCAGCTTA 60.601 57.895 36.61 17.63 42.66 3.09
4127 4391 0.031178 GAAAAGTGTGGGTGCTGCAG 59.969 55.000 10.11 10.11 0.00 4.41
4166 4431 4.504858 CAGGCTTGGTATAAAGAACTCGT 58.495 43.478 0.00 0.00 0.00 4.18
4168 4433 3.628032 GGCAGGCTTGGTATAAAGAACTC 59.372 47.826 0.00 0.00 0.00 3.01
4228 4494 8.200792 CAGTCTCTTTCTACCTACAAGCAATAT 58.799 37.037 0.00 0.00 0.00 1.28
4252 4522 5.593679 AATGGCAAGGATCAGAAATTCAG 57.406 39.130 0.00 0.00 0.00 3.02
4283 4554 7.275341 CAGTTTGTCTTTCTTTATTGTGCACAA 59.725 33.333 32.78 32.78 40.51 3.33
4310 4581 6.051646 ACTTTGTTCATTCATTTTGCTTGC 57.948 33.333 0.00 0.00 0.00 4.01
4324 4595 3.423539 AGGCAGATGCTACTTTGTTCA 57.576 42.857 4.59 0.00 41.70 3.18
4325 4596 3.503748 ACAAGGCAGATGCTACTTTGTTC 59.496 43.478 4.59 0.00 41.70 3.18
4326 4597 3.490348 ACAAGGCAGATGCTACTTTGTT 58.510 40.909 4.59 0.00 41.70 2.83
4327 4598 3.146104 ACAAGGCAGATGCTACTTTGT 57.854 42.857 4.59 7.92 41.70 2.83
4328 4599 3.503363 TCAACAAGGCAGATGCTACTTTG 59.497 43.478 4.59 7.37 41.70 2.77
4329 4600 3.754965 TCAACAAGGCAGATGCTACTTT 58.245 40.909 4.59 0.00 41.70 2.66
4330 4601 3.423539 TCAACAAGGCAGATGCTACTT 57.576 42.857 4.59 0.00 41.70 2.24
4339 4610 5.221185 CCTTATCCATCAATCAACAAGGCAG 60.221 44.000 0.00 0.00 0.00 4.85
4342 4613 6.830324 TCTTCCTTATCCATCAATCAACAAGG 59.170 38.462 0.00 0.00 34.00 3.61
4379 4650 1.804601 AGTTAGCTACGTTGCAACCC 58.195 50.000 23.42 9.64 34.99 4.11
4386 4657 5.805994 GCTAGATGACAAAGTTAGCTACGTT 59.194 40.000 0.00 0.00 35.15 3.99
4391 4662 5.667539 TCAGCTAGATGACAAAGTTAGCT 57.332 39.130 6.59 0.00 45.73 3.32
4427 4698 4.461431 TGTCGAGAAACTAGCTACATGGAA 59.539 41.667 0.00 0.00 0.00 3.53
4428 4699 4.014406 TGTCGAGAAACTAGCTACATGGA 58.986 43.478 0.00 0.00 0.00 3.41
4431 4702 3.439476 ACGTGTCGAGAAACTAGCTACAT 59.561 43.478 0.00 0.00 0.00 2.29
4494 4778 9.897744 CAAATCATTGCAACTCTCTTTTACTTA 57.102 29.630 0.00 0.00 0.00 2.24
4495 4779 8.632679 TCAAATCATTGCAACTCTCTTTTACTT 58.367 29.630 0.00 0.00 36.45 2.24
4496 4780 8.078596 GTCAAATCATTGCAACTCTCTTTTACT 58.921 33.333 0.00 0.00 36.45 2.24
4497 4781 7.327032 GGTCAAATCATTGCAACTCTCTTTTAC 59.673 37.037 0.00 0.17 36.45 2.01
4498 4782 7.370383 GGTCAAATCATTGCAACTCTCTTTTA 58.630 34.615 0.00 0.00 36.45 1.52
4515 4819 0.168128 CAGGGCGAAACGGTCAAATC 59.832 55.000 0.00 0.00 0.00 2.17
4701 5008 3.423154 GGGCTGAGCGTTTCACCG 61.423 66.667 0.00 0.00 31.58 4.94
4712 5019 1.071699 GGGTTTATCATAGCGGGCTGA 59.928 52.381 2.86 0.00 0.00 4.26
4718 5025 4.039973 TGAGGGTTAGGGTTTATCATAGCG 59.960 45.833 0.00 0.00 0.00 4.26
4734 5045 3.692406 GACGGGAGCGTGAGGGTT 61.692 66.667 0.00 0.00 0.00 4.11
4769 5080 0.798776 GCCATACCAGCGTATCATGC 59.201 55.000 0.00 0.00 32.62 4.06
4794 5108 9.679661 TGGAAGAAAAATATCATTGTAGCAGTA 57.320 29.630 0.00 0.00 0.00 2.74
4805 5119 7.726291 TGTTAGGGTGTTGGAAGAAAAATATCA 59.274 33.333 0.00 0.00 0.00 2.15
4829 5146 3.117246 TCCAGACGGAGGGAGTATATTGT 60.117 47.826 0.00 0.00 35.91 2.71
4830 5147 3.497332 TCCAGACGGAGGGAGTATATTG 58.503 50.000 0.00 0.00 35.91 1.90
4837 5154 2.389715 AGTATTTCCAGACGGAGGGAG 58.610 52.381 0.00 0.00 44.10 4.30
4838 5155 2.500098 CAAGTATTTCCAGACGGAGGGA 59.500 50.000 0.00 0.00 44.10 4.20
4839 5156 2.236395 ACAAGTATTTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
4841 5158 4.188247 TGACAAGTATTTCCAGACGGAG 57.812 45.455 0.00 0.00 44.10 4.63
4842 5159 4.221924 TGATGACAAGTATTTCCAGACGGA 59.778 41.667 0.00 0.00 40.60 4.69
4846 5163 7.093814 CCCATTTTGATGACAAGTATTTCCAGA 60.094 37.037 0.00 0.00 37.32 3.86
4847 5164 7.037438 CCCATTTTGATGACAAGTATTTCCAG 58.963 38.462 0.00 0.00 37.32 3.86
4848 5165 6.723515 TCCCATTTTGATGACAAGTATTTCCA 59.276 34.615 0.00 0.00 37.32 3.53
4849 5166 7.035612 GTCCCATTTTGATGACAAGTATTTCC 58.964 38.462 0.00 0.00 37.32 3.13
4850 5167 7.601856 TGTCCCATTTTGATGACAAGTATTTC 58.398 34.615 0.00 0.00 37.32 2.17
4851 5168 7.537596 TGTCCCATTTTGATGACAAGTATTT 57.462 32.000 0.00 0.00 37.32 1.40
4852 5169 7.722949 ATGTCCCATTTTGATGACAAGTATT 57.277 32.000 0.00 0.00 40.74 1.89
4853 5170 9.425248 AATATGTCCCATTTTGATGACAAGTAT 57.575 29.630 0.00 0.00 40.74 2.12
4854 5171 8.821686 AATATGTCCCATTTTGATGACAAGTA 57.178 30.769 0.00 0.00 40.74 2.24
4855 5172 7.722949 AATATGTCCCATTTTGATGACAAGT 57.277 32.000 0.00 0.00 40.74 3.16
4858 5175 9.253832 ACTAAAATATGTCCCATTTTGATGACA 57.746 29.630 0.00 0.00 41.52 3.58
4906 5223 9.619316 CGTCCAAAAATACTTGTCATCAAAATA 57.381 29.630 0.00 0.00 32.87 1.40
4907 5224 7.598493 CCGTCCAAAAATACTTGTCATCAAAAT 59.402 33.333 0.00 0.00 32.87 1.82
4908 5225 6.920758 CCGTCCAAAAATACTTGTCATCAAAA 59.079 34.615 0.00 0.00 32.87 2.44
4909 5226 6.263392 TCCGTCCAAAAATACTTGTCATCAAA 59.737 34.615 0.00 0.00 32.87 2.69
4910 5227 5.765677 TCCGTCCAAAAATACTTGTCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
4911 5228 5.309638 TCCGTCCAAAAATACTTGTCATCA 58.690 37.500 0.00 0.00 0.00 3.07
4912 5229 5.163754 CCTCCGTCCAAAAATACTTGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
4913 5230 4.700213 CCTCCGTCCAAAAATACTTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
4914 5231 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
4915 5232 3.439129 CCCTCCGTCCAAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
4916 5233 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
4917 5234 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
4918 5235 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
4919 5236 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
4920 5237 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
4921 5238 6.743208 GCATATACTCCCTCCGTCCAAAAATA 60.743 42.308 0.00 0.00 0.00 1.40
4922 5239 5.621193 CATATACTCCCTCCGTCCAAAAAT 58.379 41.667 0.00 0.00 0.00 1.82
4923 5240 4.685030 GCATATACTCCCTCCGTCCAAAAA 60.685 45.833 0.00 0.00 0.00 1.94
4924 5241 3.181458 GCATATACTCCCTCCGTCCAAAA 60.181 47.826 0.00 0.00 0.00 2.44
4925 5242 2.367567 GCATATACTCCCTCCGTCCAAA 59.632 50.000 0.00 0.00 0.00 3.28
4926 5243 1.968493 GCATATACTCCCTCCGTCCAA 59.032 52.381 0.00 0.00 0.00 3.53
4927 5244 1.629043 GCATATACTCCCTCCGTCCA 58.371 55.000 0.00 0.00 0.00 4.02
4928 5245 0.896226 GGCATATACTCCCTCCGTCC 59.104 60.000 0.00 0.00 0.00 4.79
4929 5246 1.546476 CAGGCATATACTCCCTCCGTC 59.454 57.143 0.00 0.00 0.00 4.79
4930 5247 1.633774 CAGGCATATACTCCCTCCGT 58.366 55.000 0.00 0.00 0.00 4.69
4931 5248 0.247736 GCAGGCATATACTCCCTCCG 59.752 60.000 0.00 0.00 0.00 4.63
4932 5249 0.615850 GGCAGGCATATACTCCCTCC 59.384 60.000 0.00 0.00 0.00 4.30
4933 5250 0.615850 GGGCAGGCATATACTCCCTC 59.384 60.000 0.00 0.00 0.00 4.30
4934 5251 0.194587 AGGGCAGGCATATACTCCCT 59.805 55.000 0.00 0.00 39.16 4.20
4935 5252 0.326264 CAGGGCAGGCATATACTCCC 59.674 60.000 0.00 0.00 0.00 4.30
4936 5253 1.059913 ACAGGGCAGGCATATACTCC 58.940 55.000 0.00 0.00 0.00 3.85
4937 5254 2.158755 ACAACAGGGCAGGCATATACTC 60.159 50.000 0.00 0.00 0.00 2.59
4938 5255 1.846439 ACAACAGGGCAGGCATATACT 59.154 47.619 0.00 0.00 0.00 2.12
4939 5256 2.348411 ACAACAGGGCAGGCATATAC 57.652 50.000 0.00 0.00 0.00 1.47
4940 5257 2.025416 ACAACAACAGGGCAGGCATATA 60.025 45.455 0.00 0.00 0.00 0.86
4941 5258 1.272648 ACAACAACAGGGCAGGCATAT 60.273 47.619 0.00 0.00 0.00 1.78
4942 5259 0.112218 ACAACAACAGGGCAGGCATA 59.888 50.000 0.00 0.00 0.00 3.14
4943 5260 0.760189 AACAACAACAGGGCAGGCAT 60.760 50.000 0.00 0.00 0.00 4.40
4944 5261 0.975040 AAACAACAACAGGGCAGGCA 60.975 50.000 0.00 0.00 0.00 4.75
4945 5262 0.177836 AAAACAACAACAGGGCAGGC 59.822 50.000 0.00 0.00 0.00 4.85
4946 5263 2.689553 AAAAACAACAACAGGGCAGG 57.310 45.000 0.00 0.00 0.00 4.85
4971 5288 8.655970 GCGCACATACAACAATATCATATTCTA 58.344 33.333 0.30 0.00 0.00 2.10
4985 5302 2.182614 AAGCACGGCGCACATACAAC 62.183 55.000 10.83 0.00 46.13 3.32
5015 5334 7.014326 TCTCACCTCGTATACAAATAGCAGATT 59.986 37.037 3.32 0.00 0.00 2.40
5018 5337 6.073327 TCTCACCTCGTATACAAATAGCAG 57.927 41.667 3.32 0.00 0.00 4.24
5032 5351 1.739562 GCCTGCAGTTCTCACCTCG 60.740 63.158 13.81 0.00 0.00 4.63
5053 5388 7.759886 CCTTGAGTCAAATCACTAGTTTATCGA 59.240 37.037 7.06 0.00 0.00 3.59
5075 5410 3.991367 ACGTACACTCTCTTTTCCCTTG 58.009 45.455 0.00 0.00 0.00 3.61
5080 5415 6.541111 AATCCAAACGTACACTCTCTTTTC 57.459 37.500 0.00 0.00 0.00 2.29
5086 5421 7.597743 CACTAACTAAATCCAAACGTACACTCT 59.402 37.037 0.00 0.00 0.00 3.24
5087 5422 7.383300 ACACTAACTAAATCCAAACGTACACTC 59.617 37.037 0.00 0.00 0.00 3.51
5118 5453 2.724358 GACAAAAACACGCCGGCG 60.724 61.111 44.88 44.88 46.03 6.46
5157 5492 4.864916 TTCAAGATCGCATCAGCTAAAC 57.135 40.909 0.00 0.00 39.10 2.01
5158 5493 5.178061 TCTTTCAAGATCGCATCAGCTAAA 58.822 37.500 0.00 0.00 39.10 1.85
5159 5494 4.758688 TCTTTCAAGATCGCATCAGCTAA 58.241 39.130 0.00 0.00 39.10 3.09
5215 5561 6.171213 ACGGGGAGTTTTTAGATTAGACTTG 58.829 40.000 0.00 0.00 0.00 3.16
5227 5573 9.421773 ACAATCTTTTGGAAACGGGGAGTTTTT 62.422 37.037 0.00 0.00 42.37 1.94
5238 5584 5.973565 CACAGACAGACAATCTTTTGGAAAC 59.026 40.000 0.00 0.00 37.15 2.78
5240 5586 4.036734 GCACAGACAGACAATCTTTTGGAA 59.963 41.667 0.00 0.00 37.15 3.53
5254 5600 1.665916 CCGTGGAGTGCACAGACAG 60.666 63.158 21.04 7.13 0.00 3.51
5345 5700 1.580845 CTGTAGCAAGTGCCAGGTGC 61.581 60.000 0.00 0.00 43.38 5.01
5373 5728 0.247537 CGACGATGACGATGACGACA 60.248 55.000 0.00 0.00 45.90 4.35
5374 5729 1.521749 GCGACGATGACGATGACGAC 61.522 60.000 0.00 0.00 42.66 4.34
5377 5732 2.906719 GCGCGACGATGACGATGAC 61.907 63.158 12.10 0.00 42.66 3.06
5380 5735 2.652179 CAGCGCGACGATGACGAT 60.652 61.111 12.10 0.00 46.56 3.73
5413 5768 0.990818 AGGATCCAAAGAGGCCCTCC 60.991 60.000 15.82 0.00 35.97 4.30
5444 5799 6.426633 TGCATATATTCCAATCGAATTCGTGT 59.573 34.615 25.93 14.14 41.58 4.49
5447 5802 7.482743 CCTTTGCATATATTCCAATCGAATTCG 59.517 37.037 21.78 21.78 41.58 3.34
5480 5835 4.915110 CGTGTTCCACTCGCAATCATGC 62.915 54.545 0.00 0.00 39.60 4.06
5481 5836 1.201954 CGTGTTCCACTCGCAATCATG 60.202 52.381 0.00 0.00 31.34 3.07
5482 5837 1.078709 CGTGTTCCACTCGCAATCAT 58.921 50.000 0.00 0.00 31.34 2.45
5483 5838 2.527671 CGTGTTCCACTCGCAATCA 58.472 52.632 0.00 0.00 31.34 2.57
5489 5844 0.511221 AATTTCGCGTGTTCCACTCG 59.489 50.000 5.77 0.65 42.77 4.18
5490 5845 1.529438 TCAATTTCGCGTGTTCCACTC 59.471 47.619 5.77 0.00 31.34 3.51
5491 5846 1.588674 TCAATTTCGCGTGTTCCACT 58.411 45.000 5.77 0.00 31.34 4.00
5492 5847 2.611974 ATCAATTTCGCGTGTTCCAC 57.388 45.000 5.77 0.00 0.00 4.02
5493 5848 3.935828 TCATATCAATTTCGCGTGTTCCA 59.064 39.130 5.77 0.00 0.00 3.53
5494 5849 4.530094 TCATATCAATTTCGCGTGTTCC 57.470 40.909 5.77 0.00 0.00 3.62
5495 5850 5.225129 GTGTTCATATCAATTTCGCGTGTTC 59.775 40.000 5.77 0.00 0.00 3.18
5496 5851 5.086058 GTGTTCATATCAATTTCGCGTGTT 58.914 37.500 5.77 0.00 0.00 3.32
5497 5852 4.153296 TGTGTTCATATCAATTTCGCGTGT 59.847 37.500 5.77 0.00 0.00 4.49
5498 5853 4.491942 GTGTGTTCATATCAATTTCGCGTG 59.508 41.667 5.77 0.00 0.00 5.34
5499 5854 4.153296 TGTGTGTTCATATCAATTTCGCGT 59.847 37.500 5.77 0.00 0.00 6.01
5500 5855 4.491942 GTGTGTGTTCATATCAATTTCGCG 59.508 41.667 0.00 0.00 0.00 5.87
5501 5856 4.491942 CGTGTGTGTTCATATCAATTTCGC 59.508 41.667 0.00 0.00 0.00 4.70
5502 5857 4.491942 GCGTGTGTGTTCATATCAATTTCG 59.508 41.667 0.00 0.00 0.00 3.46
5503 5858 4.491942 CGCGTGTGTGTTCATATCAATTTC 59.508 41.667 0.00 0.00 0.00 2.17
5504 5859 4.153296 TCGCGTGTGTGTTCATATCAATTT 59.847 37.500 5.77 0.00 0.00 1.82
5505 5860 3.682377 TCGCGTGTGTGTTCATATCAATT 59.318 39.130 5.77 0.00 0.00 2.32
5506 5861 3.258228 TCGCGTGTGTGTTCATATCAAT 58.742 40.909 5.77 0.00 0.00 2.57
5507 5862 2.678324 TCGCGTGTGTGTTCATATCAA 58.322 42.857 5.77 0.00 0.00 2.57
5508 5863 2.355717 TCGCGTGTGTGTTCATATCA 57.644 45.000 5.77 0.00 0.00 2.15
5509 5864 2.029244 CCTTCGCGTGTGTGTTCATATC 59.971 50.000 5.77 0.00 0.00 1.63
5510 5865 1.999735 CCTTCGCGTGTGTGTTCATAT 59.000 47.619 5.77 0.00 0.00 1.78
5511 5866 1.424403 CCTTCGCGTGTGTGTTCATA 58.576 50.000 5.77 0.00 0.00 2.15
5512 5867 1.841663 GCCTTCGCGTGTGTGTTCAT 61.842 55.000 5.77 0.00 0.00 2.57
5513 5868 2.530497 GCCTTCGCGTGTGTGTTCA 61.530 57.895 5.77 0.00 0.00 3.18
5514 5869 2.042520 TTGCCTTCGCGTGTGTGTTC 62.043 55.000 5.77 0.00 38.08 3.18
5515 5870 2.109739 TTGCCTTCGCGTGTGTGTT 61.110 52.632 5.77 0.00 38.08 3.32
5516 5871 2.512745 TTGCCTTCGCGTGTGTGT 60.513 55.556 5.77 0.00 38.08 3.72
5517 5872 2.052237 GTTGCCTTCGCGTGTGTG 60.052 61.111 5.77 0.00 38.08 3.82
5518 5873 0.601576 TATGTTGCCTTCGCGTGTGT 60.602 50.000 5.77 0.00 38.08 3.72
5519 5874 0.095245 CTATGTTGCCTTCGCGTGTG 59.905 55.000 5.77 0.00 38.08 3.82
5520 5875 0.037697 TCTATGTTGCCTTCGCGTGT 60.038 50.000 5.77 0.00 38.08 4.49
5521 5876 1.004610 CATCTATGTTGCCTTCGCGTG 60.005 52.381 5.77 0.00 38.08 5.34
5522 5877 1.134818 TCATCTATGTTGCCTTCGCGT 60.135 47.619 5.77 0.00 38.08 6.01
5523 5878 1.570813 TCATCTATGTTGCCTTCGCG 58.429 50.000 0.00 0.00 38.08 5.87
5524 5879 2.156504 CGATCATCTATGTTGCCTTCGC 59.843 50.000 0.00 0.00 0.00 4.70
5525 5880 2.156504 GCGATCATCTATGTTGCCTTCG 59.843 50.000 0.00 0.00 0.00 3.79
5526 5881 2.156504 CGCGATCATCTATGTTGCCTTC 59.843 50.000 0.00 0.00 0.00 3.46
5527 5882 2.138320 CGCGATCATCTATGTTGCCTT 58.862 47.619 0.00 0.00 0.00 4.35
5528 5883 1.341209 TCGCGATCATCTATGTTGCCT 59.659 47.619 3.71 0.00 0.00 4.75
5529 5884 1.783284 TCGCGATCATCTATGTTGCC 58.217 50.000 3.71 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.