Multiple sequence alignment - TraesCS2B01G048900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G048900 chr2B 100.000 3422 0 0 1 3422 24123414 24126835 0.000000e+00 6320.0
1 TraesCS2B01G048900 chr2B 88.889 2439 187 52 998 3365 24110294 24107869 0.000000e+00 2926.0
2 TraesCS2B01G048900 chr2B 82.713 1452 210 30 946 2383 24216980 24218404 0.000000e+00 1253.0
3 TraesCS2B01G048900 chr2B 80.753 1408 211 26 988 2377 24098695 24097330 0.000000e+00 1044.0
4 TraesCS2B01G048900 chr2B 84.974 579 78 5 995 1567 24215326 24215901 2.290000e-161 579.0
5 TraesCS2B01G048900 chr2B 94.030 201 12 0 331 531 65096270 65096470 4.290000e-79 305.0
6 TraesCS2B01G048900 chr2B 100.000 57 0 0 3365 3421 655255549 655255605 4.670000e-19 106.0
7 TraesCS2B01G048900 chr2A 86.517 2937 272 76 529 3370 15460733 15457826 0.000000e+00 3116.0
8 TraesCS2B01G048900 chr2A 91.956 1467 103 10 997 2455 15467791 15466332 0.000000e+00 2041.0
9 TraesCS2B01G048900 chr2A 82.744 1414 205 25 984 2383 15602441 15603829 0.000000e+00 1223.0
10 TraesCS2B01G048900 chr2A 79.033 1407 211 51 984 2377 15450029 15448694 0.000000e+00 887.0
11 TraesCS2B01G048900 chr2A 84.317 695 88 11 2690 3370 15463846 15463159 0.000000e+00 660.0
12 TraesCS2B01G048900 chr2A 83.383 337 44 8 1 330 15472069 15471738 5.550000e-78 302.0
13 TraesCS2B01G048900 chr2A 93.714 175 9 1 161 333 15460905 15460731 9.420000e-66 261.0
14 TraesCS2B01G048900 chr2A 82.895 228 32 3 3150 3370 459017305 459017078 7.490000e-47 198.0
15 TraesCS2B01G048900 chr2A 93.939 99 6 0 2596 2694 15463973 15463875 2.130000e-32 150.0
16 TraesCS2B01G048900 chr2A 85.714 119 14 1 1 116 15461548 15461430 4.640000e-24 122.0
17 TraesCS2B01G048900 chr2A 94.545 55 3 0 118 172 15461105 15461051 6.080000e-13 86.1
18 TraesCS2B01G048900 chr2A 90.196 51 5 0 149 199 17840705 17840655 2.200000e-07 67.6
19 TraesCS2B01G048900 chr2D 92.828 1492 93 10 997 2487 13476038 13474560 0.000000e+00 2150.0
20 TraesCS2B01G048900 chr2D 82.683 1461 211 30 946 2393 13508793 13510224 0.000000e+00 1258.0
21 TraesCS2B01G048900 chr2D 81.799 1434 186 37 970 2389 13483023 13481651 0.000000e+00 1133.0
22 TraesCS2B01G048900 chr2D 83.470 1101 154 18 1283 2374 640240971 640242052 0.000000e+00 1000.0
23 TraesCS2B01G048900 chr2D 83.748 763 91 18 1618 2377 13435184 13434452 0.000000e+00 691.0
24 TraesCS2B01G048900 chr2D 84.322 708 79 13 2690 3370 13474246 13473544 0.000000e+00 664.0
25 TraesCS2B01G048900 chr2D 95.025 201 9 1 331 531 401289118 401288919 7.130000e-82 315.0
26 TraesCS2B01G048900 chr2D 94.059 202 12 0 331 532 632583345 632583144 1.190000e-79 307.0
27 TraesCS2B01G048900 chr2D 83.772 228 30 3 3150 3370 565521448 565521221 3.460000e-50 209.0
28 TraesCS2B01G048900 chr2D 84.141 227 19 11 2482 2694 13474498 13474275 1.610000e-48 204.0
29 TraesCS2B01G048900 chr2D 79.061 277 28 14 660 908 558801620 558801346 2.730000e-36 163.0
30 TraesCS2B01G048900 chr2D 79.435 248 23 13 674 893 25334369 25334122 2.130000e-32 150.0
31 TraesCS2B01G048900 chr2D 93.939 66 4 0 3356 3421 296245191 296245126 2.170000e-17 100.0
32 TraesCS2B01G048900 chr4D 73.903 1345 255 54 1077 2377 489628850 489627558 5.210000e-123 451.0
33 TraesCS2B01G048900 chr4D 73.980 1226 239 51 1189 2377 489468690 489467508 1.140000e-114 424.0
34 TraesCS2B01G048900 chr4D 73.355 1231 239 56 1189 2377 489623608 489622425 1.160000e-99 374.0
35 TraesCS2B01G048900 chr4D 94.030 67 3 1 3355 3421 9157667 9157602 2.170000e-17 100.0
36 TraesCS2B01G048900 chr4B 74.020 1097 227 40 1307 2365 627555828 627554752 8.900000e-106 394.0
37 TraesCS2B01G048900 chr4B 78.652 267 28 11 660 898 34451910 34451645 2.130000e-32 150.0
38 TraesCS2B01G048900 chr4B 100.000 57 0 0 3365 3421 60114051 60114107 4.670000e-19 106.0
39 TraesCS2B01G048900 chr7B 94.527 201 11 0 331 531 521120872 521121072 9.220000e-81 311.0
40 TraesCS2B01G048900 chr7B 94.416 197 11 0 333 529 286836839 286836643 1.540000e-78 303.0
41 TraesCS2B01G048900 chr5D 94.527 201 10 1 331 531 256208061 256207862 3.320000e-80 309.0
42 TraesCS2B01G048900 chr5D 83.404 235 31 4 3143 3370 300161890 300162123 9.620000e-51 211.0
43 TraesCS2B01G048900 chr5D 96.774 62 2 0 3360 3421 417119485 417119546 1.680000e-18 104.0
44 TraesCS2B01G048900 chr7D 93.627 204 12 1 332 534 28070999 28071202 1.540000e-78 303.0
45 TraesCS2B01G048900 chr7D 100.000 57 0 0 3365 3421 244131719 244131775 4.670000e-19 106.0
46 TraesCS2B01G048900 chr3B 94.030 201 11 1 331 531 732155033 732155232 1.540000e-78 303.0
47 TraesCS2B01G048900 chr3B 92.754 207 13 2 326 531 693932365 693932570 7.180000e-77 298.0
48 TraesCS2B01G048900 chr3B 84.071 226 29 3 3150 3368 228738937 228738712 9.620000e-51 211.0
49 TraesCS2B01G048900 chr7A 83.333 228 29 5 3147 3366 17210296 17210522 5.790000e-48 202.0
50 TraesCS2B01G048900 chr7A 82.479 234 33 4 3144 3370 419932564 419932332 7.490000e-47 198.0
51 TraesCS2B01G048900 chr3A 80.321 249 35 11 660 894 102268664 102268416 3.510000e-40 176.0
52 TraesCS2B01G048900 chr3A 76.923 260 34 19 660 893 246937080 246937339 1.290000e-24 124.0
53 TraesCS2B01G048900 chr6A 78.927 261 27 16 661 893 125307186 125307446 5.910000e-33 152.0
54 TraesCS2B01G048900 chr5A 78.409 264 29 12 661 896 590580363 590580626 2.750000e-31 147.0
55 TraesCS2B01G048900 chr6B 77.818 275 30 21 658 901 497258278 497258552 1.280000e-29 141.0
56 TraesCS2B01G048900 chr5B 77.686 242 26 16 682 895 514080412 514080653 4.640000e-24 122.0
57 TraesCS2B01G048900 chr1A 98.333 60 0 1 3363 3421 252173980 252174039 1.680000e-18 104.0
58 TraesCS2B01G048900 chr6D 96.774 62 0 2 3361 3421 216912316 216912376 6.040000e-18 102.0
59 TraesCS2B01G048900 chr1D 93.939 66 4 0 3356 3421 303113749 303113814 2.170000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G048900 chr2B 24123414 24126835 3421 False 6320.0000 6320 100.000000 1 3422 1 chr2B.!!$F1 3421
1 TraesCS2B01G048900 chr2B 24107869 24110294 2425 True 2926.0000 2926 88.889000 998 3365 1 chr2B.!!$R2 2367
2 TraesCS2B01G048900 chr2B 24097330 24098695 1365 True 1044.0000 1044 80.753000 988 2377 1 chr2B.!!$R1 1389
3 TraesCS2B01G048900 chr2B 24215326 24218404 3078 False 916.0000 1253 83.843500 946 2383 2 chr2B.!!$F4 1437
4 TraesCS2B01G048900 chr2A 15602441 15603829 1388 False 1223.0000 1223 82.744000 984 2383 1 chr2A.!!$F1 1399
5 TraesCS2B01G048900 chr2A 15448694 15450029 1335 True 887.0000 887 79.033000 984 2377 1 chr2A.!!$R1 1393
6 TraesCS2B01G048900 chr2A 15457826 15472069 14243 True 842.2625 3116 89.260625 1 3370 8 chr2A.!!$R4 3369
7 TraesCS2B01G048900 chr2D 13508793 13510224 1431 False 1258.0000 1258 82.683000 946 2393 1 chr2D.!!$F1 1447
8 TraesCS2B01G048900 chr2D 13481651 13483023 1372 True 1133.0000 1133 81.799000 970 2389 1 chr2D.!!$R2 1419
9 TraesCS2B01G048900 chr2D 13473544 13476038 2494 True 1006.0000 2150 87.097000 997 3370 3 chr2D.!!$R9 2373
10 TraesCS2B01G048900 chr2D 640240971 640242052 1081 False 1000.0000 1000 83.470000 1283 2374 1 chr2D.!!$F2 1091
11 TraesCS2B01G048900 chr2D 13434452 13435184 732 True 691.0000 691 83.748000 1618 2377 1 chr2D.!!$R1 759
12 TraesCS2B01G048900 chr4D 489467508 489468690 1182 True 424.0000 424 73.980000 1189 2377 1 chr4D.!!$R2 1188
13 TraesCS2B01G048900 chr4D 489622425 489628850 6425 True 412.5000 451 73.629000 1077 2377 2 chr4D.!!$R3 1300
14 TraesCS2B01G048900 chr4B 627554752 627555828 1076 True 394.0000 394 74.020000 1307 2365 1 chr4B.!!$R2 1058

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 370 0.253630 AATGGGAGGTGCTTAGGGGA 60.254 55.0 0.0 0.0 0.00 4.81 F
1009 4538 0.103026 GGCGATCAAAATGGAAGGCC 59.897 55.0 0.0 0.0 33.81 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1955 14783 0.323360 GTTGCCCAGATAACCCTGCA 60.323 55.0 0.0 0.0 32.97 4.41 R
2891 21056 0.110192 GTCGCCAAAGTACAAGCAGC 60.110 55.0 0.0 0.0 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.765915 TGTTTTGTGCACATAGCCATTATA 57.234 33.333 22.39 0.00 44.83 0.98
89 90 4.695455 TGCACCTAACAAATAACTGCTCTC 59.305 41.667 0.00 0.00 0.00 3.20
97 98 6.809630 ACAAATAACTGCTCTCTTCTTTCC 57.190 37.500 0.00 0.00 0.00 3.13
100 101 7.174080 ACAAATAACTGCTCTCTTCTTTCCTTC 59.826 37.037 0.00 0.00 0.00 3.46
102 103 4.270245 ACTGCTCTCTTCTTTCCTTCTG 57.730 45.455 0.00 0.00 0.00 3.02
103 104 3.007831 ACTGCTCTCTTCTTTCCTTCTGG 59.992 47.826 0.00 0.00 0.00 3.86
121 122 2.753989 GGCATGTTTTTGTTGTTGCC 57.246 45.000 0.00 0.00 42.40 4.52
123 124 2.012673 GCATGTTTTTGTTGTTGCCCA 58.987 42.857 0.00 0.00 0.00 5.36
130 131 3.836151 GTTGTTGCCCAACGGACT 58.164 55.556 6.66 0.00 43.71 3.85
138 139 3.926821 TGCCCAACGGACTTTAATTTC 57.073 42.857 0.00 0.00 0.00 2.17
139 140 3.492337 TGCCCAACGGACTTTAATTTCT 58.508 40.909 0.00 0.00 0.00 2.52
140 141 4.653868 TGCCCAACGGACTTTAATTTCTA 58.346 39.130 0.00 0.00 0.00 2.10
141 142 5.258051 TGCCCAACGGACTTTAATTTCTAT 58.742 37.500 0.00 0.00 0.00 1.98
142 143 5.124776 TGCCCAACGGACTTTAATTTCTATG 59.875 40.000 0.00 0.00 0.00 2.23
143 144 5.578776 CCCAACGGACTTTAATTTCTATGC 58.421 41.667 0.00 0.00 0.00 3.14
144 145 5.449999 CCCAACGGACTTTAATTTCTATGCC 60.450 44.000 0.00 0.00 0.00 4.40
145 146 5.449999 CCAACGGACTTTAATTTCTATGCCC 60.450 44.000 0.00 0.00 0.00 5.36
147 148 6.243216 ACGGACTTTAATTTCTATGCCCTA 57.757 37.500 0.00 0.00 0.00 3.53
149 150 7.287810 ACGGACTTTAATTTCTATGCCCTATT 58.712 34.615 0.00 0.00 0.00 1.73
150 151 7.228706 ACGGACTTTAATTTCTATGCCCTATTG 59.771 37.037 0.00 0.00 0.00 1.90
158 161 8.773033 AATTTCTATGCCCTATTGAACTTGAT 57.227 30.769 0.00 0.00 31.71 2.57
159 162 7.572523 TTTCTATGCCCTATTGAACTTGATG 57.427 36.000 0.00 0.00 31.71 3.07
186 189 7.238486 TGGATGTGTTGGTTGCTTTATTTAT 57.762 32.000 0.00 0.00 0.00 1.40
192 195 8.969267 TGTGTTGGTTGCTTTATTTATAAAACG 58.031 29.630 1.21 0.00 32.39 3.60
199 204 9.072294 GTTGCTTTATTTATAAAACGCAGTGAT 57.928 29.630 1.21 0.00 45.00 3.06
250 256 5.285651 TGTTTTTCATGGAAAACCGATCAC 58.714 37.500 30.66 12.58 44.78 3.06
252 258 5.720371 TTTTCATGGAAAACCGATCACAT 57.280 34.783 0.00 0.00 36.73 3.21
253 259 4.963276 TTCATGGAAAACCGATCACATC 57.037 40.909 0.00 0.00 0.00 3.06
255 261 7.954643 TTTTCATGGAAAACCGATCACATCGT 61.955 38.462 0.00 0.00 42.00 3.73
256 262 9.334782 TTTTCATGGAAAACCGATCACATCGTT 62.335 37.037 0.00 0.00 42.00 3.85
290 296 1.293498 CCCTCTCGGGTGTGAACTG 59.707 63.158 0.00 0.00 46.12 3.16
292 298 0.679505 CCTCTCGGGTGTGAACTGAA 59.320 55.000 0.00 0.00 0.00 3.02
304 312 5.411669 GGTGTGAACTGAACCTAACTTATGG 59.588 44.000 0.00 0.00 0.00 2.74
321 329 7.865706 ACTTATGGTTAGGTTCTTTATGCTG 57.134 36.000 0.00 0.00 0.00 4.41
323 331 4.650972 TGGTTAGGTTCTTTATGCTGGT 57.349 40.909 0.00 0.00 0.00 4.00
330 338 5.580022 AGGTTCTTTATGCTGGTACCAATT 58.420 37.500 17.11 6.11 0.00 2.32
331 339 6.016555 AGGTTCTTTATGCTGGTACCAATTT 58.983 36.000 17.11 5.74 0.00 1.82
333 341 7.339466 AGGTTCTTTATGCTGGTACCAATTTAG 59.661 37.037 17.11 4.79 0.00 1.85
334 342 7.416326 GGTTCTTTATGCTGGTACCAATTTAGG 60.416 40.741 17.11 4.00 0.00 2.69
335 343 5.592688 TCTTTATGCTGGTACCAATTTAGGC 59.407 40.000 17.11 14.88 0.00 3.93
336 344 2.137810 TGCTGGTACCAATTTAGGCC 57.862 50.000 17.11 0.00 0.00 5.19
337 345 1.638589 TGCTGGTACCAATTTAGGCCT 59.361 47.619 17.11 11.78 0.00 5.19
338 346 2.042433 TGCTGGTACCAATTTAGGCCTT 59.958 45.455 17.11 0.00 0.00 4.35
339 347 2.427095 GCTGGTACCAATTTAGGCCTTG 59.573 50.000 17.11 1.91 0.00 3.61
341 349 4.850680 CTGGTACCAATTTAGGCCTTGTA 58.149 43.478 17.11 0.00 0.00 2.41
342 350 4.591929 TGGTACCAATTTAGGCCTTGTAC 58.408 43.478 12.58 12.81 0.00 2.90
344 352 5.011586 GGTACCAATTTAGGCCTTGTACAA 58.988 41.667 12.58 8.28 0.00 2.41
345 353 5.655090 GGTACCAATTTAGGCCTTGTACAAT 59.345 40.000 12.58 0.00 0.00 2.71
347 355 4.466015 ACCAATTTAGGCCTTGTACAATGG 59.534 41.667 12.58 13.36 0.00 3.16
349 357 4.601406 ATTTAGGCCTTGTACAATGGGA 57.399 40.909 12.58 0.00 0.00 4.37
351 359 0.625849 AGGCCTTGTACAATGGGAGG 59.374 55.000 16.08 11.34 0.00 4.30
353 361 1.463674 GCCTTGTACAATGGGAGGTG 58.536 55.000 16.08 0.00 0.00 4.00
354 362 1.463674 CCTTGTACAATGGGAGGTGC 58.536 55.000 9.13 0.00 0.00 5.01
355 363 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
357 365 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
359 367 2.238646 TGTACAATGGGAGGTGCTTAGG 59.761 50.000 0.00 0.00 0.00 2.69
360 368 0.625849 ACAATGGGAGGTGCTTAGGG 59.374 55.000 0.00 0.00 0.00 3.53
362 370 0.253630 AATGGGAGGTGCTTAGGGGA 60.254 55.000 0.00 0.00 0.00 4.81
363 371 0.695803 ATGGGAGGTGCTTAGGGGAG 60.696 60.000 0.00 0.00 0.00 4.30
367 375 0.910088 GAGGTGCTTAGGGGAGGTGT 60.910 60.000 0.00 0.00 0.00 4.16
368 376 0.475828 AGGTGCTTAGGGGAGGTGTT 60.476 55.000 0.00 0.00 0.00 3.32
369 377 0.404426 GGTGCTTAGGGGAGGTGTTT 59.596 55.000 0.00 0.00 0.00 2.83
376 1000 4.019591 GCTTAGGGGAGGTGTTTAGAGAAA 60.020 45.833 0.00 0.00 0.00 2.52
381 1005 7.285340 AGGGGAGGTGTTTAGAGAAATAAAT 57.715 36.000 0.00 0.00 0.00 1.40
384 1008 7.283354 GGGGAGGTGTTTAGAGAAATAAATCAG 59.717 40.741 0.00 0.00 0.00 2.90
387 1011 7.406104 AGGTGTTTAGAGAAATAAATCAGGCT 58.594 34.615 0.00 0.00 0.00 4.58
389 1013 8.523658 GGTGTTTAGAGAAATAAATCAGGCTTT 58.476 33.333 0.00 0.00 0.00 3.51
390 1014 9.914131 GTGTTTAGAGAAATAAATCAGGCTTTT 57.086 29.630 0.00 0.00 0.00 2.27
397 1021 9.295214 GAGAAATAAATCAGGCTTTTCTTAAGC 57.705 33.333 10.11 0.98 36.91 3.09
398 1022 8.806146 AGAAATAAATCAGGCTTTTCTTAAGCA 58.194 29.630 11.18 0.00 44.71 3.91
400 1024 4.790765 AATCAGGCTTTTCTTAAGCACC 57.209 40.909 11.18 0.00 44.71 5.01
401 1025 2.151202 TCAGGCTTTTCTTAAGCACCG 58.849 47.619 11.18 0.09 44.71 4.94
402 1026 1.200020 CAGGCTTTTCTTAAGCACCGG 59.800 52.381 0.00 0.00 44.71 5.28
403 1027 1.202891 AGGCTTTTCTTAAGCACCGGT 60.203 47.619 0.00 0.00 44.71 5.28
404 1028 1.068541 GGCTTTTCTTAAGCACCGGTG 60.069 52.381 30.66 30.66 44.71 4.94
420 1044 5.305585 CACCGGTGCTTATTTGTATAGGAT 58.694 41.667 24.02 0.00 0.00 3.24
421 1045 6.460781 CACCGGTGCTTATTTGTATAGGATA 58.539 40.000 24.02 0.00 0.00 2.59
422 1046 6.590292 CACCGGTGCTTATTTGTATAGGATAG 59.410 42.308 24.02 0.00 0.00 2.08
423 1047 6.495872 ACCGGTGCTTATTTGTATAGGATAGA 59.504 38.462 6.12 0.00 0.00 1.98
424 1048 7.180408 ACCGGTGCTTATTTGTATAGGATAGAT 59.820 37.037 6.12 0.00 0.00 1.98
425 1049 7.492669 CCGGTGCTTATTTGTATAGGATAGATG 59.507 40.741 0.00 0.00 0.00 2.90
426 1050 7.010552 CGGTGCTTATTTGTATAGGATAGATGC 59.989 40.741 0.00 0.00 0.00 3.91
427 1051 8.043710 GGTGCTTATTTGTATAGGATAGATGCT 58.956 37.037 0.00 0.00 0.00 3.79
428 1052 9.442047 GTGCTTATTTGTATAGGATAGATGCTT 57.558 33.333 0.00 0.00 0.00 3.91
460 1084 5.705609 TTTCTCTTGTAGAAATTGGCACC 57.294 39.130 0.00 0.00 46.88 5.01
461 1085 3.334691 TCTCTTGTAGAAATTGGCACCG 58.665 45.455 0.00 0.00 0.00 4.94
462 1086 2.420022 CTCTTGTAGAAATTGGCACCGG 59.580 50.000 0.00 0.00 0.00 5.28
463 1087 2.159382 CTTGTAGAAATTGGCACCGGT 58.841 47.619 0.00 0.00 0.00 5.28
464 1088 1.529226 TGTAGAAATTGGCACCGGTG 58.471 50.000 30.66 30.66 0.00 4.94
496 1120 6.453926 AAAACCGGTTTACTTTTCTAAGCA 57.546 33.333 31.80 0.00 34.60 3.91
497 1121 6.644248 AAACCGGTTTACTTTTCTAAGCAT 57.356 33.333 30.76 0.44 34.60 3.79
498 1122 5.874895 ACCGGTTTACTTTTCTAAGCATC 57.125 39.130 0.00 0.00 34.60 3.91
500 1124 5.642491 ACCGGTTTACTTTTCTAAGCATCTC 59.358 40.000 0.00 0.00 34.60 2.75
501 1125 5.875359 CCGGTTTACTTTTCTAAGCATCTCT 59.125 40.000 0.00 0.00 34.60 3.10
502 1126 6.036191 CCGGTTTACTTTTCTAAGCATCTCTC 59.964 42.308 0.00 0.00 34.60 3.20
505 1129 9.654663 GGTTTACTTTTCTAAGCATCTCTCTAA 57.345 33.333 0.00 0.00 34.60 2.10
507 1131 8.934507 TTACTTTTCTAAGCATCTCTCTAAGC 57.065 34.615 0.00 0.00 34.60 3.09
511 1135 4.541705 TCTAAGCATCTCTCTAAGCACCT 58.458 43.478 0.00 0.00 0.00 4.00
513 1137 3.030873 AGCATCTCTCTAAGCACCTCT 57.969 47.619 0.00 0.00 0.00 3.69
514 1138 2.958355 AGCATCTCTCTAAGCACCTCTC 59.042 50.000 0.00 0.00 0.00 3.20
515 1139 2.692557 GCATCTCTCTAAGCACCTCTCA 59.307 50.000 0.00 0.00 0.00 3.27
516 1140 3.321682 GCATCTCTCTAAGCACCTCTCAT 59.678 47.826 0.00 0.00 0.00 2.90
517 1141 4.202243 GCATCTCTCTAAGCACCTCTCATT 60.202 45.833 0.00 0.00 0.00 2.57
518 1142 4.998671 TCTCTCTAAGCACCTCTCATTG 57.001 45.455 0.00 0.00 0.00 2.82
519 1143 4.348486 TCTCTCTAAGCACCTCTCATTGT 58.652 43.478 0.00 0.00 0.00 2.71
521 1145 5.358442 TCTCTCTAAGCACCTCTCATTGTAC 59.642 44.000 0.00 0.00 0.00 2.90
523 1147 5.480422 TCTCTAAGCACCTCTCATTGTACAA 59.520 40.000 11.41 11.41 0.00 2.41
524 1148 5.724328 TCTAAGCACCTCTCATTGTACAAG 58.276 41.667 14.65 6.58 0.00 3.16
525 1149 3.340814 AGCACCTCTCATTGTACAAGG 57.659 47.619 13.96 13.96 0.00 3.61
526 1150 1.740025 GCACCTCTCATTGTACAAGGC 59.260 52.381 15.24 4.41 0.00 4.35
528 1152 2.026822 CACCTCTCATTGTACAAGGCCT 60.027 50.000 15.24 0.00 0.00 5.19
529 1153 2.644798 ACCTCTCATTGTACAAGGCCTT 59.355 45.455 13.78 13.78 0.00 4.35
531 1155 4.475016 ACCTCTCATTGTACAAGGCCTTAT 59.525 41.667 20.00 10.37 0.00 1.73
534 1158 5.674525 TCTCATTGTACAAGGCCTTATCAG 58.325 41.667 20.00 8.49 0.00 2.90
535 1159 5.425217 TCTCATTGTACAAGGCCTTATCAGA 59.575 40.000 20.00 6.15 0.00 3.27
536 1160 5.674525 TCATTGTACAAGGCCTTATCAGAG 58.325 41.667 20.00 7.24 0.00 3.35
537 1161 5.189736 TCATTGTACAAGGCCTTATCAGAGT 59.810 40.000 20.00 13.37 0.00 3.24
538 1162 5.499004 TTGTACAAGGCCTTATCAGAGTT 57.501 39.130 20.00 0.00 0.00 3.01
539 1163 5.086104 TGTACAAGGCCTTATCAGAGTTC 57.914 43.478 20.00 9.23 0.00 3.01
548 3349 5.707764 GGCCTTATCAGAGTTCAAGTTCTTT 59.292 40.000 0.00 0.00 0.00 2.52
553 3354 6.857777 ATCAGAGTTCAAGTTCTTTCACTG 57.142 37.500 0.00 0.00 0.00 3.66
554 3355 5.118990 TCAGAGTTCAAGTTCTTTCACTGG 58.881 41.667 0.00 0.00 0.00 4.00
559 3360 3.620488 TCAAGTTCTTTCACTGGTGCTT 58.380 40.909 0.00 0.00 0.00 3.91
569 3370 4.439305 TCACTGGTGCTTGCATTATTTC 57.561 40.909 0.00 0.00 0.00 2.17
579 3380 8.764287 GGTGCTTGCATTATTTCAATTTATACC 58.236 33.333 0.00 0.00 0.00 2.73
582 3383 8.490355 GCTTGCATTATTTCAATTTATACCAGC 58.510 33.333 0.00 0.00 0.00 4.85
583 3384 9.754382 CTTGCATTATTTCAATTTATACCAGCT 57.246 29.630 0.00 0.00 0.00 4.24
595 3396 9.941664 CAATTTATACCAGCTTTTCTAGTGATG 57.058 33.333 0.00 0.00 0.00 3.07
598 3399 8.718102 TTATACCAGCTTTTCTAGTGATGTTC 57.282 34.615 0.00 0.00 0.00 3.18
604 3405 8.514594 CCAGCTTTTCTAGTGATGTTCATTTAA 58.485 33.333 0.00 0.00 0.00 1.52
615 3416 9.082313 AGTGATGTTCATTTAATGGAAGAAAGT 57.918 29.630 5.02 0.00 0.00 2.66
618 3419 9.696917 GATGTTCATTTAATGGAAGAAAGTGTT 57.303 29.630 5.02 0.00 0.00 3.32
619 3420 9.696917 ATGTTCATTTAATGGAAGAAAGTGTTC 57.303 29.630 5.02 0.00 0.00 3.18
620 3421 8.912988 TGTTCATTTAATGGAAGAAAGTGTTCT 58.087 29.630 5.02 0.00 46.47 3.01
621 3422 9.399403 GTTCATTTAATGGAAGAAAGTGTTCTC 57.601 33.333 5.02 0.00 43.59 2.87
622 3423 8.690203 TCATTTAATGGAAGAAAGTGTTCTCA 57.310 30.769 5.02 0.00 43.59 3.27
623 3424 9.300681 TCATTTAATGGAAGAAAGTGTTCTCAT 57.699 29.630 5.02 0.00 43.59 2.90
625 3426 9.918630 ATTTAATGGAAGAAAGTGTTCTCATTG 57.081 29.630 11.03 0.00 43.59 2.82
626 3427 8.690203 TTAATGGAAGAAAGTGTTCTCATTGA 57.310 30.769 11.03 3.88 43.59 2.57
628 3429 5.684704 TGGAAGAAAGTGTTCTCATTGACT 58.315 37.500 0.00 0.00 43.59 3.41
629 3430 6.122277 TGGAAGAAAGTGTTCTCATTGACTT 58.878 36.000 0.00 0.00 43.59 3.01
632 3433 7.396540 AAGAAAGTGTTCTCATTGACTTTGT 57.603 32.000 0.00 0.00 43.59 2.83
639 3822 9.778741 AGTGTTCTCATTGACTTTGTCTATAAA 57.221 29.630 0.00 0.00 33.15 1.40
652 3835 9.998106 ACTTTGTCTATAAAGTTGAGTGTATGT 57.002 29.630 0.00 0.00 45.85 2.29
655 3838 8.757164 TGTCTATAAAGTTGAGTGTATGTGTG 57.243 34.615 0.00 0.00 0.00 3.82
656 3839 7.330946 TGTCTATAAAGTTGAGTGTATGTGTGC 59.669 37.037 0.00 0.00 0.00 4.57
657 3840 7.330946 GTCTATAAAGTTGAGTGTATGTGTGCA 59.669 37.037 0.00 0.00 0.00 4.57
658 3841 8.040727 TCTATAAAGTTGAGTGTATGTGTGCAT 58.959 33.333 0.00 0.00 39.03 3.96
659 3842 4.754372 AAGTTGAGTGTATGTGTGCATG 57.246 40.909 0.00 0.00 36.58 4.06
661 3844 4.893608 AGTTGAGTGTATGTGTGCATGTA 58.106 39.130 0.00 0.00 36.58 2.29
662 3845 4.690748 AGTTGAGTGTATGTGTGCATGTAC 59.309 41.667 7.03 7.03 36.58 2.90
665 3848 4.929211 TGAGTGTATGTGTGCATGTACTTC 59.071 41.667 15.25 8.74 34.79 3.01
666 3849 4.253685 AGTGTATGTGTGCATGTACTTCC 58.746 43.478 15.25 4.02 36.58 3.46
668 3851 4.695455 GTGTATGTGTGCATGTACTTCCTT 59.305 41.667 15.25 4.49 36.58 3.36
669 3852 4.935205 TGTATGTGTGCATGTACTTCCTTC 59.065 41.667 15.25 2.83 36.58 3.46
670 3853 2.412870 TGTGTGCATGTACTTCCTTCG 58.587 47.619 15.25 0.00 0.00 3.79
671 3854 2.224185 TGTGTGCATGTACTTCCTTCGT 60.224 45.455 15.25 0.00 0.00 3.85
672 3855 2.806244 GTGTGCATGTACTTCCTTCGTT 59.194 45.455 15.25 0.00 0.00 3.85
673 3856 3.250040 GTGTGCATGTACTTCCTTCGTTT 59.750 43.478 15.25 0.00 0.00 3.60
674 3857 3.880490 TGTGCATGTACTTCCTTCGTTTT 59.120 39.130 15.25 0.00 0.00 2.43
675 3858 4.336993 TGTGCATGTACTTCCTTCGTTTTT 59.663 37.500 15.25 0.00 0.00 1.94
676 3859 5.527951 TGTGCATGTACTTCCTTCGTTTTTA 59.472 36.000 15.25 0.00 0.00 1.52
677 3860 6.205853 TGTGCATGTACTTCCTTCGTTTTTAT 59.794 34.615 15.25 0.00 0.00 1.40
678 3861 7.081976 GTGCATGTACTTCCTTCGTTTTTATT 58.918 34.615 6.69 0.00 0.00 1.40
679 3862 7.593644 GTGCATGTACTTCCTTCGTTTTTATTT 59.406 33.333 6.69 0.00 0.00 1.40
680 3863 7.593273 TGCATGTACTTCCTTCGTTTTTATTTG 59.407 33.333 0.00 0.00 0.00 2.32
681 3864 7.410407 GCATGTACTTCCTTCGTTTTTATTTGC 60.410 37.037 0.00 0.00 0.00 3.68
682 3865 6.440436 TGTACTTCCTTCGTTTTTATTTGCC 58.560 36.000 0.00 0.00 0.00 4.52
683 3866 4.542735 ACTTCCTTCGTTTTTATTTGCCG 58.457 39.130 0.00 0.00 0.00 5.69
684 3867 2.936316 TCCTTCGTTTTTATTTGCCGC 58.064 42.857 0.00 0.00 0.00 6.53
685 3868 2.293677 TCCTTCGTTTTTATTTGCCGCA 59.706 40.909 0.00 0.00 0.00 5.69
686 3869 3.057174 TCCTTCGTTTTTATTTGCCGCAT 60.057 39.130 0.00 0.00 0.00 4.73
687 3870 4.156190 TCCTTCGTTTTTATTTGCCGCATA 59.844 37.500 0.00 0.00 0.00 3.14
688 3871 5.040635 CCTTCGTTTTTATTTGCCGCATAT 58.959 37.500 0.00 0.00 0.00 1.78
689 3872 5.518487 CCTTCGTTTTTATTTGCCGCATATT 59.482 36.000 1.43 0.00 0.00 1.28
690 3873 6.693545 CCTTCGTTTTTATTTGCCGCATATTA 59.306 34.615 1.43 0.00 0.00 0.98
691 3874 7.381139 CCTTCGTTTTTATTTGCCGCATATTAT 59.619 33.333 1.43 0.00 0.00 1.28
692 3875 7.845617 TCGTTTTTATTTGCCGCATATTATC 57.154 32.000 1.43 0.00 0.00 1.75
693 3876 7.644490 TCGTTTTTATTTGCCGCATATTATCT 58.356 30.769 1.43 0.00 0.00 1.98
694 3877 8.132362 TCGTTTTTATTTGCCGCATATTATCTT 58.868 29.630 1.43 0.00 0.00 2.40
695 3878 8.751335 CGTTTTTATTTGCCGCATATTATCTTT 58.249 29.630 1.43 0.00 0.00 2.52
696 3879 9.848172 GTTTTTATTTGCCGCATATTATCTTTG 57.152 29.630 1.43 0.00 0.00 2.77
697 3880 8.586570 TTTTATTTGCCGCATATTATCTTTGG 57.413 30.769 1.43 0.00 0.00 3.28
698 3881 5.789643 ATTTGCCGCATATTATCTTTGGT 57.210 34.783 0.00 0.00 0.00 3.67
699 3882 4.829064 TTGCCGCATATTATCTTTGGTC 57.171 40.909 0.00 0.00 0.00 4.02
700 3883 3.814625 TGCCGCATATTATCTTTGGTCA 58.185 40.909 0.00 0.00 0.00 4.02
701 3884 4.203226 TGCCGCATATTATCTTTGGTCAA 58.797 39.130 0.00 0.00 0.00 3.18
702 3885 4.642437 TGCCGCATATTATCTTTGGTCAAA 59.358 37.500 0.00 0.00 0.00 2.69
703 3886 5.215160 GCCGCATATTATCTTTGGTCAAAG 58.785 41.667 15.18 15.18 46.82 2.77
704 3887 5.221048 GCCGCATATTATCTTTGGTCAAAGT 60.221 40.000 19.13 11.42 45.88 2.66
705 3888 6.430451 CCGCATATTATCTTTGGTCAAAGTC 58.570 40.000 19.13 3.92 45.88 3.01
706 3889 6.038161 CCGCATATTATCTTTGGTCAAAGTCA 59.962 38.462 19.13 8.71 45.88 3.41
707 3890 7.415095 CCGCATATTATCTTTGGTCAAAGTCAA 60.415 37.037 19.13 14.96 45.88 3.18
708 3891 8.131100 CGCATATTATCTTTGGTCAAAGTCAAT 58.869 33.333 19.13 18.97 45.88 2.57
709 3892 9.241317 GCATATTATCTTTGGTCAAAGTCAATG 57.759 33.333 19.13 16.39 45.88 2.82
888 4071 8.959734 ACATACAAAGTAAATAAAAACGAGGC 57.040 30.769 0.00 0.00 0.00 4.70
889 4072 8.569641 ACATACAAAGTAAATAAAAACGAGGCA 58.430 29.630 0.00 0.00 0.00 4.75
890 4073 9.061610 CATACAAAGTAAATAAAAACGAGGCAG 57.938 33.333 0.00 0.00 0.00 4.85
891 4074 7.034685 ACAAAGTAAATAAAAACGAGGCAGT 57.965 32.000 0.00 0.00 0.00 4.40
892 4075 8.156994 ACAAAGTAAATAAAAACGAGGCAGTA 57.843 30.769 0.00 0.00 0.00 2.74
893 4076 8.071967 ACAAAGTAAATAAAAACGAGGCAGTAC 58.928 33.333 0.00 0.00 0.00 2.73
894 4077 6.732531 AGTAAATAAAAACGAGGCAGTACC 57.267 37.500 0.00 0.00 39.61 3.34
923 4106 9.561069 CTAATAGGCTTATTTATATCGCCCAAT 57.439 33.333 6.38 0.00 41.60 3.16
925 4108 5.193679 AGGCTTATTTATATCGCCCAATCC 58.806 41.667 0.00 0.00 41.60 3.01
939 4122 3.671008 CCAATCCATGGCCATACAATG 57.329 47.619 20.30 14.94 43.80 2.82
941 4124 3.835978 CCAATCCATGGCCATACAATGAT 59.164 43.478 20.30 12.28 43.80 2.45
942 4125 5.018149 CCAATCCATGGCCATACAATGATA 58.982 41.667 20.30 0.00 43.80 2.15
943 4126 5.105635 CCAATCCATGGCCATACAATGATAC 60.106 44.000 20.30 0.00 43.80 2.24
944 4127 4.720775 TCCATGGCCATACAATGATACA 57.279 40.909 20.30 0.00 0.00 2.29
948 4131 5.068855 CCATGGCCATACAATGATACAACAA 59.931 40.000 20.30 0.00 0.00 2.83
954 4137 6.027131 CCATACAATGATACAACAAACACGG 58.973 40.000 0.00 0.00 0.00 4.94
959 4142 3.455327 TGATACAACAAACACGGTCGAA 58.545 40.909 0.00 0.00 0.00 3.71
966 4149 0.447011 AAACACGGTCGAACGCAAAA 59.553 45.000 25.21 0.00 37.37 2.44
968 4151 1.500108 ACACGGTCGAACGCAAAATA 58.500 45.000 25.21 0.00 37.37 1.40
971 4154 1.865970 ACGGTCGAACGCAAAATAACA 59.134 42.857 25.21 0.00 37.37 2.41
981 4164 4.460505 ACGCAAAATAACAGTTTCGCTAC 58.539 39.130 0.00 0.00 0.00 3.58
1009 4538 0.103026 GGCGATCAAAATGGAAGGCC 59.897 55.000 0.00 0.00 33.81 5.19
1035 4564 0.534427 TCCAGATCGTATCTCGGCGT 60.534 55.000 6.85 0.00 37.58 5.68
1039 4568 1.130749 AGATCGTATCTCGGCGTATGC 59.869 52.381 6.85 0.00 40.32 3.14
1067 4596 3.181461 CCAGATTATCAAACGAGCTCCCT 60.181 47.826 8.47 0.00 0.00 4.20
1072 4601 4.394712 AAACGAGCTCCCTGCCGG 62.395 66.667 8.47 0.00 44.23 6.13
1954 14782 3.049674 CACGCGTGAAGGGCATGT 61.050 61.111 34.93 0.00 35.87 3.21
1955 14783 2.281484 ACGCGTGAAGGGCATGTT 60.281 55.556 12.93 0.00 35.87 2.71
2355 20325 4.592192 GATGCGCTCGCCAGGCTA 62.592 66.667 10.54 0.00 41.09 3.93
2414 20384 1.426621 GTCGACGTACTGATCCGCA 59.573 57.895 0.00 0.00 0.00 5.69
2427 20404 1.836999 ATCCGCAGTGGTAGGTGCAA 61.837 55.000 0.00 0.00 39.83 4.08
2457 20434 3.011760 GCGTCGAAGGAGTTTGCCG 62.012 63.158 0.00 0.00 0.00 5.69
2474 20473 3.006940 TGCCGTTCAGATACAATGGAAC 58.993 45.455 0.00 0.00 37.01 3.62
2552 20623 4.606457 AAATTTCTGCTCATGTCTACGC 57.394 40.909 0.00 0.00 0.00 4.42
2575 20662 5.409826 GCCAGACTCCATTATTAGCACATAC 59.590 44.000 0.00 0.00 0.00 2.39
2582 20669 2.143008 TATTAGCACATACGCCCGTG 57.857 50.000 3.22 0.00 36.18 4.94
2719 20880 2.456840 CCCCTCCTCCACCTCCTT 59.543 66.667 0.00 0.00 0.00 3.36
2732 20893 3.139025 CCACCTCCTTCATTACCCATCAT 59.861 47.826 0.00 0.00 0.00 2.45
2739 20901 3.507162 TCATTACCCATCATCGGCATT 57.493 42.857 0.00 0.00 0.00 3.56
2747 20909 3.584834 CCATCATCGGCATTACGACATA 58.415 45.455 0.00 0.00 46.64 2.29
2761 20923 6.548441 TTACGACATAAACAAACTCCTTGG 57.452 37.500 0.00 0.00 39.56 3.61
2767 20929 5.480422 ACATAAACAAACTCCTTGGAATCCC 59.520 40.000 0.00 0.00 39.56 3.85
2780 20944 0.186873 GAATCCCCCATGCTCCACAT 59.813 55.000 0.00 0.00 40.66 3.21
2822 20986 2.521105 AGCGTTTACAAAGACCGTCT 57.479 45.000 0.00 0.00 0.00 4.18
2831 20995 3.432378 ACAAAGACCGTCTATCTCTGGT 58.568 45.455 0.26 0.00 37.44 4.00
2842 21006 9.529823 ACCGTCTATCTCTGGTTAATATAATGA 57.470 33.333 0.00 0.00 0.00 2.57
2889 21054 2.618709 CACAACAGAAACTCCCAAGTCC 59.381 50.000 0.00 0.00 33.48 3.85
2891 21056 0.396811 ACAGAAACTCCCAAGTCCGG 59.603 55.000 0.00 0.00 33.48 5.14
2907 21072 1.210155 CGGCTGCTTGTACTTTGGC 59.790 57.895 0.00 0.00 0.00 4.52
2913 21078 1.495951 CTTGTACTTTGGCGACGGC 59.504 57.895 15.43 15.43 38.90 5.68
3079 21261 8.506168 TCTTTTGAGTTAAACAGTTCTGACAT 57.494 30.769 6.83 0.00 0.00 3.06
3082 21264 5.368145 TGAGTTAAACAGTTCTGACATGCT 58.632 37.500 6.83 0.00 0.00 3.79
3185 21373 4.141482 TGGTTTGATGGTTAGGAGGATAGC 60.141 45.833 0.00 0.00 0.00 2.97
3235 21423 0.179048 TGGTGCTCGCATTATCCTGG 60.179 55.000 0.00 0.00 0.00 4.45
3268 21457 4.848660 AGGATATAGGGTGATGTGCATTCT 59.151 41.667 0.00 0.00 0.00 2.40
3272 21461 1.352017 AGGGTGATGTGCATTCTGTGA 59.648 47.619 0.00 0.00 0.00 3.58
3273 21462 2.161855 GGGTGATGTGCATTCTGTGAA 58.838 47.619 0.00 0.00 0.00 3.18
3276 21465 3.503363 GGTGATGTGCATTCTGTGAAAGA 59.497 43.478 0.00 0.00 0.00 2.52
3321 21511 2.158449 GCTTGAGGTGACTTCGTCAATG 59.842 50.000 0.00 0.00 44.49 2.82
3322 21512 3.653344 CTTGAGGTGACTTCGTCAATGA 58.347 45.455 0.00 0.00 44.49 2.57
3324 21514 3.588955 TGAGGTGACTTCGTCAATGATG 58.411 45.455 0.00 0.00 44.49 3.07
3349 21544 1.137086 GCCGGCTCAGTCTCTCAAATA 59.863 52.381 22.15 0.00 0.00 1.40
3370 21565 3.116096 TGCTCATAGGAGTAGGGTGTT 57.884 47.619 6.23 0.00 43.37 3.32
3371 21566 2.766263 TGCTCATAGGAGTAGGGTGTTG 59.234 50.000 6.23 0.00 43.37 3.33
3372 21567 3.031736 GCTCATAGGAGTAGGGTGTTGA 58.968 50.000 6.23 0.00 43.37 3.18
3373 21568 3.643792 GCTCATAGGAGTAGGGTGTTGAT 59.356 47.826 6.23 0.00 43.37 2.57
3374 21569 4.833380 GCTCATAGGAGTAGGGTGTTGATA 59.167 45.833 6.23 0.00 43.37 2.15
3375 21570 5.279056 GCTCATAGGAGTAGGGTGTTGATAC 60.279 48.000 6.23 0.00 43.37 2.24
3376 21571 4.825634 TCATAGGAGTAGGGTGTTGATACG 59.174 45.833 0.00 0.00 0.00 3.06
3377 21572 3.097342 AGGAGTAGGGTGTTGATACGT 57.903 47.619 0.00 0.00 0.00 3.57
3378 21573 3.022406 AGGAGTAGGGTGTTGATACGTC 58.978 50.000 0.00 0.00 0.00 4.34
3379 21574 3.022406 GGAGTAGGGTGTTGATACGTCT 58.978 50.000 0.00 0.00 0.00 4.18
3380 21575 3.066481 GGAGTAGGGTGTTGATACGTCTC 59.934 52.174 0.00 0.00 0.00 3.36
3381 21576 3.022406 AGTAGGGTGTTGATACGTCTCC 58.978 50.000 0.00 0.00 0.00 3.71
3382 21577 1.933021 AGGGTGTTGATACGTCTCCA 58.067 50.000 0.00 0.00 0.00 3.86
3383 21578 2.253610 AGGGTGTTGATACGTCTCCAA 58.746 47.619 0.00 0.00 0.00 3.53
3384 21579 2.028385 AGGGTGTTGATACGTCTCCAAC 60.028 50.000 16.06 16.06 40.22 3.77
3401 21596 9.836076 CGTCTCCAACGTATCTATAATTTATGA 57.164 33.333 0.00 0.00 46.42 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.888412 AACAAAAAGCAAATAGAGCAACG 57.112 34.783 0.00 0.00 0.00 4.10
12 13 6.456718 GCACAAAACAAAAAGCAAATAGAGCA 60.457 34.615 0.00 0.00 0.00 4.26
13 14 5.903530 GCACAAAACAAAAAGCAAATAGAGC 59.096 36.000 0.00 0.00 0.00 4.09
51 52 7.675062 TGTTAGGTGCATGTGGAAAATAAATT 58.325 30.769 0.00 0.00 0.00 1.82
56 57 5.543507 TTTGTTAGGTGCATGTGGAAAAT 57.456 34.783 0.00 0.00 0.00 1.82
60 61 5.182950 CAGTTATTTGTTAGGTGCATGTGGA 59.817 40.000 0.00 0.00 0.00 4.02
62 63 4.858692 GCAGTTATTTGTTAGGTGCATGTG 59.141 41.667 0.00 0.00 0.00 3.21
64 65 5.124457 AGAGCAGTTATTTGTTAGGTGCATG 59.876 40.000 0.00 0.00 31.75 4.06
65 66 5.256474 AGAGCAGTTATTTGTTAGGTGCAT 58.744 37.500 0.00 0.00 31.75 3.96
71 72 8.447053 GGAAAGAAGAGAGCAGTTATTTGTTAG 58.553 37.037 0.00 0.00 0.00 2.34
89 90 4.861102 AAACATGCCAGAAGGAAAGAAG 57.139 40.909 0.00 0.00 36.89 2.85
97 98 4.494526 GCAACAACAAAAACATGCCAGAAG 60.495 41.667 0.00 0.00 0.00 2.85
100 101 3.322230 GCAACAACAAAAACATGCCAG 57.678 42.857 0.00 0.00 0.00 4.85
102 103 2.753989 GGCAACAACAAAAACATGCC 57.246 45.000 0.00 0.00 45.54 4.40
103 104 2.012673 TGGGCAACAACAAAAACATGC 58.987 42.857 0.00 0.00 39.74 4.06
121 122 5.449999 GGGCATAGAAATTAAAGTCCGTTGG 60.450 44.000 0.00 0.00 0.00 3.77
123 124 5.506708 AGGGCATAGAAATTAAAGTCCGTT 58.493 37.500 0.00 0.00 0.00 4.44
125 126 7.444183 TCAATAGGGCATAGAAATTAAAGTCCG 59.556 37.037 0.00 0.00 0.00 4.79
126 127 8.691661 TCAATAGGGCATAGAAATTAAAGTCC 57.308 34.615 0.00 0.00 0.00 3.85
127 128 9.952188 GTTCAATAGGGCATAGAAATTAAAGTC 57.048 33.333 0.00 0.00 0.00 3.01
128 129 9.700831 AGTTCAATAGGGCATAGAAATTAAAGT 57.299 29.630 0.00 0.00 0.00 2.66
138 139 7.120285 CCATACATCAAGTTCAATAGGGCATAG 59.880 40.741 0.00 0.00 0.00 2.23
139 140 6.942005 CCATACATCAAGTTCAATAGGGCATA 59.058 38.462 0.00 0.00 0.00 3.14
140 141 5.771666 CCATACATCAAGTTCAATAGGGCAT 59.228 40.000 0.00 0.00 0.00 4.40
141 142 5.104151 TCCATACATCAAGTTCAATAGGGCA 60.104 40.000 0.00 0.00 0.00 5.36
142 143 5.376625 TCCATACATCAAGTTCAATAGGGC 58.623 41.667 0.00 0.00 0.00 5.19
143 144 7.000472 ACATCCATACATCAAGTTCAATAGGG 59.000 38.462 0.00 0.00 0.00 3.53
144 145 7.500227 ACACATCCATACATCAAGTTCAATAGG 59.500 37.037 0.00 0.00 0.00 2.57
145 146 8.442632 ACACATCCATACATCAAGTTCAATAG 57.557 34.615 0.00 0.00 0.00 1.73
147 148 7.363181 CCAACACATCCATACATCAAGTTCAAT 60.363 37.037 0.00 0.00 0.00 2.57
149 150 5.415389 CCAACACATCCATACATCAAGTTCA 59.585 40.000 0.00 0.00 0.00 3.18
150 151 5.415701 ACCAACACATCCATACATCAAGTTC 59.584 40.000 0.00 0.00 0.00 3.01
158 161 3.153369 AGCAACCAACACATCCATACA 57.847 42.857 0.00 0.00 0.00 2.29
159 162 4.519540 AAAGCAACCAACACATCCATAC 57.480 40.909 0.00 0.00 0.00 2.39
209 214 0.904649 CATGGGAGTGGCTACAGTCA 59.095 55.000 2.02 0.00 46.68 3.41
211 216 1.362224 AACATGGGAGTGGCTACAGT 58.638 50.000 2.02 0.00 0.00 3.55
212 217 2.496899 AAACATGGGAGTGGCTACAG 57.503 50.000 2.02 0.00 0.00 2.74
250 256 6.986817 AGGGATATAAAGACAAGACAACGATG 59.013 38.462 0.00 0.00 0.00 3.84
252 258 6.380274 AGAGGGATATAAAGACAAGACAACGA 59.620 38.462 0.00 0.00 0.00 3.85
253 259 6.574350 AGAGGGATATAAAGACAAGACAACG 58.426 40.000 0.00 0.00 0.00 4.10
255 261 6.806751 CGAGAGGGATATAAAGACAAGACAA 58.193 40.000 0.00 0.00 0.00 3.18
256 262 6.392625 CGAGAGGGATATAAAGACAAGACA 57.607 41.667 0.00 0.00 0.00 3.41
304 312 5.493809 TGGTACCAGCATAAAGAACCTAAC 58.506 41.667 11.60 0.00 0.00 2.34
321 329 4.591929 TGTACAAGGCCTAAATTGGTACC 58.408 43.478 5.16 4.43 0.00 3.34
323 331 5.654650 CCATTGTACAAGGCCTAAATTGGTA 59.345 40.000 14.66 0.00 0.00 3.25
330 338 2.241176 CCTCCCATTGTACAAGGCCTAA 59.759 50.000 14.66 0.00 0.00 2.69
331 339 1.843851 CCTCCCATTGTACAAGGCCTA 59.156 52.381 14.66 1.57 0.00 3.93
333 341 0.331616 ACCTCCCATTGTACAAGGCC 59.668 55.000 14.66 0.00 0.00 5.19
334 342 1.463674 CACCTCCCATTGTACAAGGC 58.536 55.000 14.66 0.00 0.00 4.35
335 343 1.004745 AGCACCTCCCATTGTACAAGG 59.995 52.381 14.65 13.92 0.00 3.61
336 344 2.496899 AGCACCTCCCATTGTACAAG 57.503 50.000 14.65 6.30 0.00 3.16
337 345 2.969821 AAGCACCTCCCATTGTACAA 57.030 45.000 11.41 11.41 0.00 2.41
338 346 2.238646 CCTAAGCACCTCCCATTGTACA 59.761 50.000 0.00 0.00 0.00 2.90
339 347 2.421529 CCCTAAGCACCTCCCATTGTAC 60.422 54.545 0.00 0.00 0.00 2.90
341 349 0.625849 CCCTAAGCACCTCCCATTGT 59.374 55.000 0.00 0.00 0.00 2.71
342 350 0.106519 CCCCTAAGCACCTCCCATTG 60.107 60.000 0.00 0.00 0.00 2.82
344 352 0.695803 CTCCCCTAAGCACCTCCCAT 60.696 60.000 0.00 0.00 0.00 4.00
345 353 1.306997 CTCCCCTAAGCACCTCCCA 60.307 63.158 0.00 0.00 0.00 4.37
347 355 1.307084 ACCTCCCCTAAGCACCTCC 60.307 63.158 0.00 0.00 0.00 4.30
349 357 0.475828 AACACCTCCCCTAAGCACCT 60.476 55.000 0.00 0.00 0.00 4.00
351 359 2.570302 TCTAAACACCTCCCCTAAGCAC 59.430 50.000 0.00 0.00 0.00 4.40
353 361 3.105283 TCTCTAAACACCTCCCCTAAGC 58.895 50.000 0.00 0.00 0.00 3.09
354 362 5.757099 TTTCTCTAAACACCTCCCCTAAG 57.243 43.478 0.00 0.00 0.00 2.18
355 363 7.817910 TTATTTCTCTAAACACCTCCCCTAA 57.182 36.000 0.00 0.00 0.00 2.69
357 365 6.713731 TTTATTTCTCTAAACACCTCCCCT 57.286 37.500 0.00 0.00 0.00 4.79
359 367 7.283354 CCTGATTTATTTCTCTAAACACCTCCC 59.717 40.741 0.00 0.00 0.00 4.30
360 368 7.201741 GCCTGATTTATTTCTCTAAACACCTCC 60.202 40.741 0.00 0.00 0.00 4.30
362 370 7.406104 AGCCTGATTTATTTCTCTAAACACCT 58.594 34.615 0.00 0.00 0.00 4.00
363 371 7.631717 AGCCTGATTTATTTCTCTAAACACC 57.368 36.000 0.00 0.00 0.00 4.16
376 1000 6.404734 CGGTGCTTAAGAAAAGCCTGATTTAT 60.405 38.462 6.67 0.00 42.36 1.40
381 1005 2.151202 CGGTGCTTAAGAAAAGCCTGA 58.849 47.619 6.67 0.00 42.36 3.86
384 1008 1.068541 CACCGGTGCTTAAGAAAAGCC 60.069 52.381 24.02 0.00 42.36 4.35
397 1021 4.699637 TCCTATACAAATAAGCACCGGTG 58.300 43.478 30.66 30.66 0.00 4.94
398 1022 5.562298 ATCCTATACAAATAAGCACCGGT 57.438 39.130 0.00 0.00 0.00 5.28
400 1024 7.010552 GCATCTATCCTATACAAATAAGCACCG 59.989 40.741 0.00 0.00 0.00 4.94
401 1025 8.043710 AGCATCTATCCTATACAAATAAGCACC 58.956 37.037 0.00 0.00 0.00 5.01
402 1026 9.442047 AAGCATCTATCCTATACAAATAAGCAC 57.558 33.333 0.00 0.00 0.00 4.40
425 1049 7.115947 TTCTACAAGAGAAACGCTTAGTTAAGC 59.884 37.037 12.72 12.72 46.02 3.09
426 1050 8.516811 TTCTACAAGAGAAACGCTTAGTTAAG 57.483 34.615 0.00 0.00 43.37 1.85
439 1063 3.751175 CGGTGCCAATTTCTACAAGAGAA 59.249 43.478 0.00 0.00 42.69 2.87
440 1064 3.334691 CGGTGCCAATTTCTACAAGAGA 58.665 45.455 0.00 0.00 0.00 3.10
441 1065 2.420022 CCGGTGCCAATTTCTACAAGAG 59.580 50.000 0.00 0.00 0.00 2.85
442 1066 2.224670 ACCGGTGCCAATTTCTACAAGA 60.225 45.455 6.12 0.00 0.00 3.02
444 1068 1.883275 CACCGGTGCCAATTTCTACAA 59.117 47.619 24.02 0.00 0.00 2.41
445 1069 1.529226 CACCGGTGCCAATTTCTACA 58.471 50.000 24.02 0.00 0.00 2.74
472 1096 6.865411 TGCTTAGAAAAGTAAACCGGTTTTT 58.135 32.000 35.69 23.96 34.99 1.94
473 1097 6.453926 TGCTTAGAAAAGTAAACCGGTTTT 57.546 33.333 35.69 19.01 34.99 2.43
474 1098 6.489022 AGATGCTTAGAAAAGTAAACCGGTTT 59.511 34.615 33.42 33.42 34.99 3.27
475 1099 6.002082 AGATGCTTAGAAAAGTAAACCGGTT 58.998 36.000 15.86 15.86 34.99 4.44
477 1101 5.875359 AGAGATGCTTAGAAAAGTAAACCGG 59.125 40.000 0.00 0.00 34.99 5.28
478 1102 6.814146 AGAGAGATGCTTAGAAAAGTAAACCG 59.186 38.462 0.00 0.00 34.99 4.44
479 1103 9.654663 TTAGAGAGATGCTTAGAAAAGTAAACC 57.345 33.333 0.00 0.00 34.99 3.27
481 1105 9.372369 GCTTAGAGAGATGCTTAGAAAAGTAAA 57.628 33.333 0.00 0.00 34.99 2.01
482 1106 8.531982 TGCTTAGAGAGATGCTTAGAAAAGTAA 58.468 33.333 0.00 0.00 34.99 2.24
483 1107 7.976734 GTGCTTAGAGAGATGCTTAGAAAAGTA 59.023 37.037 0.00 0.00 34.99 2.24
484 1108 6.816140 GTGCTTAGAGAGATGCTTAGAAAAGT 59.184 38.462 0.00 0.00 34.99 2.66
485 1109 6.257630 GGTGCTTAGAGAGATGCTTAGAAAAG 59.742 42.308 0.00 0.00 35.68 2.27
487 1111 5.423610 AGGTGCTTAGAGAGATGCTTAGAAA 59.576 40.000 0.00 0.00 0.00 2.52
488 1112 4.959210 AGGTGCTTAGAGAGATGCTTAGAA 59.041 41.667 0.00 0.00 0.00 2.10
489 1113 4.541705 AGGTGCTTAGAGAGATGCTTAGA 58.458 43.478 0.00 0.00 0.00 2.10
491 1115 4.541705 AGAGGTGCTTAGAGAGATGCTTA 58.458 43.478 0.00 0.00 0.00 3.09
492 1116 3.373830 AGAGGTGCTTAGAGAGATGCTT 58.626 45.455 0.00 0.00 0.00 3.91
493 1117 2.958355 GAGAGGTGCTTAGAGAGATGCT 59.042 50.000 0.00 0.00 0.00 3.79
494 1118 2.692557 TGAGAGGTGCTTAGAGAGATGC 59.307 50.000 0.00 0.00 0.00 3.91
495 1119 5.163426 ACAATGAGAGGTGCTTAGAGAGATG 60.163 44.000 0.00 0.00 0.00 2.90
496 1120 4.961730 ACAATGAGAGGTGCTTAGAGAGAT 59.038 41.667 0.00 0.00 0.00 2.75
497 1121 4.348486 ACAATGAGAGGTGCTTAGAGAGA 58.652 43.478 0.00 0.00 0.00 3.10
498 1122 4.734398 ACAATGAGAGGTGCTTAGAGAG 57.266 45.455 0.00 0.00 0.00 3.20
500 1124 5.330455 TGTACAATGAGAGGTGCTTAGAG 57.670 43.478 0.00 0.00 0.00 2.43
501 1125 5.337571 CCTTGTACAATGAGAGGTGCTTAGA 60.338 44.000 9.13 0.00 0.00 2.10
502 1126 4.872691 CCTTGTACAATGAGAGGTGCTTAG 59.127 45.833 9.13 0.00 0.00 2.18
505 1129 2.616510 GCCTTGTACAATGAGAGGTGCT 60.617 50.000 14.26 0.00 0.00 4.40
506 1130 1.740025 GCCTTGTACAATGAGAGGTGC 59.260 52.381 14.26 2.54 0.00 5.01
507 1131 2.026822 AGGCCTTGTACAATGAGAGGTG 60.027 50.000 14.26 0.00 0.00 4.00
511 1135 5.425217 TCTGATAAGGCCTTGTACAATGAGA 59.575 40.000 28.77 17.94 0.00 3.27
513 1137 5.189736 ACTCTGATAAGGCCTTGTACAATGA 59.810 40.000 28.77 16.00 0.00 2.57
514 1138 5.431765 ACTCTGATAAGGCCTTGTACAATG 58.568 41.667 28.77 18.51 0.00 2.82
515 1139 5.700402 ACTCTGATAAGGCCTTGTACAAT 57.300 39.130 28.77 13.08 0.00 2.71
516 1140 5.012664 TGAACTCTGATAAGGCCTTGTACAA 59.987 40.000 28.77 7.95 0.00 2.41
517 1141 4.530553 TGAACTCTGATAAGGCCTTGTACA 59.469 41.667 28.77 21.20 0.00 2.90
518 1142 5.086104 TGAACTCTGATAAGGCCTTGTAC 57.914 43.478 28.77 17.97 0.00 2.90
519 1143 5.248477 ACTTGAACTCTGATAAGGCCTTGTA 59.752 40.000 28.77 9.67 0.00 2.41
521 1145 4.583871 ACTTGAACTCTGATAAGGCCTTG 58.416 43.478 28.77 12.48 0.00 3.61
523 1147 4.534103 AGAACTTGAACTCTGATAAGGCCT 59.466 41.667 0.00 0.00 0.00 5.19
524 1148 4.837972 AGAACTTGAACTCTGATAAGGCC 58.162 43.478 0.00 0.00 0.00 5.19
525 1149 6.428159 TGAAAGAACTTGAACTCTGATAAGGC 59.572 38.462 0.00 0.00 0.00 4.35
526 1150 7.659390 AGTGAAAGAACTTGAACTCTGATAAGG 59.341 37.037 0.00 0.00 0.00 2.69
528 1152 7.442364 CCAGTGAAAGAACTTGAACTCTGATAA 59.558 37.037 0.00 0.00 0.00 1.75
529 1153 6.931281 CCAGTGAAAGAACTTGAACTCTGATA 59.069 38.462 0.00 0.00 0.00 2.15
531 1155 5.118990 CCAGTGAAAGAACTTGAACTCTGA 58.881 41.667 0.00 0.00 0.00 3.27
534 1158 4.496507 GCACCAGTGAAAGAACTTGAACTC 60.497 45.833 0.99 0.00 0.00 3.01
535 1159 3.378427 GCACCAGTGAAAGAACTTGAACT 59.622 43.478 0.99 0.00 0.00 3.01
536 1160 3.378427 AGCACCAGTGAAAGAACTTGAAC 59.622 43.478 0.99 0.00 0.00 3.18
537 1161 3.620488 AGCACCAGTGAAAGAACTTGAA 58.380 40.909 0.99 0.00 0.00 2.69
538 1162 3.281727 AGCACCAGTGAAAGAACTTGA 57.718 42.857 0.99 0.00 0.00 3.02
539 1163 3.699067 CAAGCACCAGTGAAAGAACTTG 58.301 45.455 0.99 1.06 0.00 3.16
548 3349 3.825585 TGAAATAATGCAAGCACCAGTGA 59.174 39.130 0.99 0.00 0.00 3.41
553 3354 8.764287 GGTATAAATTGAAATAATGCAAGCACC 58.236 33.333 0.00 0.00 0.00 5.01
554 3355 9.311916 TGGTATAAATTGAAATAATGCAAGCAC 57.688 29.630 0.00 0.00 0.00 4.40
569 3370 9.941664 CATCACTAGAAAAGCTGGTATAAATTG 57.058 33.333 0.00 0.00 35.99 2.32
591 3392 8.859090 ACACTTTCTTCCATTAAATGAACATCA 58.141 29.630 0.00 0.00 0.00 3.07
592 3393 9.696917 AACACTTTCTTCCATTAAATGAACATC 57.303 29.630 0.00 0.00 0.00 3.06
595 3396 9.399403 GAGAACACTTTCTTCCATTAAATGAAC 57.601 33.333 0.00 0.00 42.53 3.18
598 3399 9.918630 AATGAGAACACTTTCTTCCATTAAATG 57.081 29.630 0.00 0.00 42.53 2.32
604 3405 6.302269 AGTCAATGAGAACACTTTCTTCCAT 58.698 36.000 0.00 0.00 42.53 3.41
613 3414 9.778741 TTTATAGACAAAGTCAATGAGAACACT 57.221 29.630 0.00 0.00 34.60 3.55
615 3416 9.778741 ACTTTATAGACAAAGTCAATGAGAACA 57.221 29.630 0.00 0.00 43.59 3.18
618 3419 9.996554 TCAACTTTATAGACAAAGTCAATGAGA 57.003 29.630 2.01 0.00 45.68 3.27
620 3421 9.778741 ACTCAACTTTATAGACAAAGTCAATGA 57.221 29.630 2.01 2.65 45.68 2.57
621 3422 9.817365 CACTCAACTTTATAGACAAAGTCAATG 57.183 33.333 2.01 0.00 45.68 2.82
622 3423 9.561069 ACACTCAACTTTATAGACAAAGTCAAT 57.439 29.630 2.01 0.00 45.68 2.57
623 3424 8.958119 ACACTCAACTTTATAGACAAAGTCAA 57.042 30.769 2.01 0.00 45.68 3.18
628 3429 9.772973 ACACATACACTCAACTTTATAGACAAA 57.227 29.630 0.00 0.00 0.00 2.83
629 3430 9.203421 CACACATACACTCAACTTTATAGACAA 57.797 33.333 0.00 0.00 0.00 3.18
632 3433 7.382898 TGCACACATACACTCAACTTTATAGA 58.617 34.615 0.00 0.00 0.00 1.98
639 3822 3.743521 ACATGCACACATACACTCAACT 58.256 40.909 0.00 0.00 33.67 3.16
641 3824 4.893608 AGTACATGCACACATACACTCAA 58.106 39.130 0.00 0.00 33.67 3.02
652 3835 2.831685 ACGAAGGAAGTACATGCACA 57.168 45.000 0.00 0.00 0.00 4.57
655 3838 7.410407 GCAAATAAAAACGAAGGAAGTACATGC 60.410 37.037 0.00 0.00 0.00 4.06
656 3839 7.061789 GGCAAATAAAAACGAAGGAAGTACATG 59.938 37.037 0.00 0.00 0.00 3.21
657 3840 7.088272 GGCAAATAAAAACGAAGGAAGTACAT 58.912 34.615 0.00 0.00 0.00 2.29
658 3841 6.440436 GGCAAATAAAAACGAAGGAAGTACA 58.560 36.000 0.00 0.00 0.00 2.90
659 3842 5.566395 CGGCAAATAAAAACGAAGGAAGTAC 59.434 40.000 0.00 0.00 0.00 2.73
661 3844 4.542735 CGGCAAATAAAAACGAAGGAAGT 58.457 39.130 0.00 0.00 0.00 3.01
662 3845 3.363724 GCGGCAAATAAAAACGAAGGAAG 59.636 43.478 0.00 0.00 0.00 3.46
665 3848 2.667137 TGCGGCAAATAAAAACGAAGG 58.333 42.857 0.00 0.00 0.00 3.46
666 3849 6.567769 AATATGCGGCAAATAAAAACGAAG 57.432 33.333 6.82 0.00 0.00 3.79
668 3851 7.644490 AGATAATATGCGGCAAATAAAAACGA 58.356 30.769 6.82 0.00 0.00 3.85
669 3852 7.851822 AGATAATATGCGGCAAATAAAAACG 57.148 32.000 6.82 0.00 0.00 3.60
670 3853 9.848172 CAAAGATAATATGCGGCAAATAAAAAC 57.152 29.630 6.82 0.00 0.00 2.43
671 3854 9.039870 CCAAAGATAATATGCGGCAAATAAAAA 57.960 29.630 6.82 0.00 0.00 1.94
672 3855 8.200792 ACCAAAGATAATATGCGGCAAATAAAA 58.799 29.630 6.82 0.00 0.00 1.52
673 3856 7.721402 ACCAAAGATAATATGCGGCAAATAAA 58.279 30.769 6.82 0.00 0.00 1.40
674 3857 7.013750 TGACCAAAGATAATATGCGGCAAATAA 59.986 33.333 6.82 0.00 0.00 1.40
675 3858 6.488344 TGACCAAAGATAATATGCGGCAAATA 59.512 34.615 6.82 0.70 0.00 1.40
676 3859 5.301551 TGACCAAAGATAATATGCGGCAAAT 59.698 36.000 6.82 0.00 0.00 2.32
677 3860 4.642437 TGACCAAAGATAATATGCGGCAAA 59.358 37.500 6.82 0.00 0.00 3.68
678 3861 4.203226 TGACCAAAGATAATATGCGGCAA 58.797 39.130 6.82 0.00 0.00 4.52
679 3862 3.814625 TGACCAAAGATAATATGCGGCA 58.185 40.909 4.58 4.58 0.00 5.69
680 3863 4.829064 TTGACCAAAGATAATATGCGGC 57.171 40.909 0.00 0.00 0.00 6.53
862 4045 9.401873 GCCTCGTTTTTATTTACTTTGTATGTT 57.598 29.630 0.00 0.00 0.00 2.71
863 4046 8.569641 TGCCTCGTTTTTATTTACTTTGTATGT 58.430 29.630 0.00 0.00 0.00 2.29
864 4047 8.958175 TGCCTCGTTTTTATTTACTTTGTATG 57.042 30.769 0.00 0.00 0.00 2.39
865 4048 8.789762 ACTGCCTCGTTTTTATTTACTTTGTAT 58.210 29.630 0.00 0.00 0.00 2.29
866 4049 8.156994 ACTGCCTCGTTTTTATTTACTTTGTA 57.843 30.769 0.00 0.00 0.00 2.41
867 4050 7.034685 ACTGCCTCGTTTTTATTTACTTTGT 57.965 32.000 0.00 0.00 0.00 2.83
868 4051 7.536281 GGTACTGCCTCGTTTTTATTTACTTTG 59.464 37.037 0.00 0.00 0.00 2.77
869 4052 7.446319 AGGTACTGCCTCGTTTTTATTTACTTT 59.554 33.333 0.00 0.00 46.96 2.66
870 4053 6.938596 AGGTACTGCCTCGTTTTTATTTACTT 59.061 34.615 0.00 0.00 46.96 2.24
871 4054 6.470278 AGGTACTGCCTCGTTTTTATTTACT 58.530 36.000 0.00 0.00 46.96 2.24
872 4055 6.732531 AGGTACTGCCTCGTTTTTATTTAC 57.267 37.500 0.00 0.00 46.96 2.01
892 4075 7.711339 GCGATATAAATAAGCCTATTAGCAGGT 59.289 37.037 0.00 0.00 38.05 4.00
893 4076 7.171678 GGCGATATAAATAAGCCTATTAGCAGG 59.828 40.741 10.71 0.00 44.06 4.85
894 4077 7.171678 GGGCGATATAAATAAGCCTATTAGCAG 59.828 40.741 15.11 0.00 46.44 4.24
895 4078 6.990349 GGGCGATATAAATAAGCCTATTAGCA 59.010 38.462 15.11 0.00 46.44 3.49
896 4079 6.990349 TGGGCGATATAAATAAGCCTATTAGC 59.010 38.462 15.11 0.00 46.44 3.09
897 4080 8.958119 TTGGGCGATATAAATAAGCCTATTAG 57.042 34.615 15.11 0.00 46.44 1.73
898 4081 9.555727 GATTGGGCGATATAAATAAGCCTATTA 57.444 33.333 15.11 2.07 46.44 0.98
899 4082 7.502561 GGATTGGGCGATATAAATAAGCCTATT 59.497 37.037 15.11 8.82 46.44 1.73
900 4083 6.998673 GGATTGGGCGATATAAATAAGCCTAT 59.001 38.462 15.11 10.87 46.44 2.57
901 4084 6.069905 TGGATTGGGCGATATAAATAAGCCTA 60.070 38.462 15.11 9.49 46.44 3.93
902 4085 5.193679 GGATTGGGCGATATAAATAAGCCT 58.806 41.667 15.11 1.86 46.44 4.58
903 4086 4.947388 TGGATTGGGCGATATAAATAAGCC 59.053 41.667 9.90 9.90 46.51 4.35
904 4087 6.460123 CCATGGATTGGGCGATATAAATAAGC 60.460 42.308 5.56 0.00 42.33 3.09
905 4088 6.460123 GCCATGGATTGGGCGATATAAATAAG 60.460 42.308 18.40 0.00 46.55 1.73
906 4089 5.359576 GCCATGGATTGGGCGATATAAATAA 59.640 40.000 18.40 0.00 46.55 1.40
907 4090 4.887071 GCCATGGATTGGGCGATATAAATA 59.113 41.667 18.40 0.00 46.55 1.40
908 4091 3.701040 GCCATGGATTGGGCGATATAAAT 59.299 43.478 18.40 0.00 46.55 1.40
910 4093 2.722094 GCCATGGATTGGGCGATATAA 58.278 47.619 18.40 0.00 46.55 0.98
912 4095 3.271250 GCCATGGATTGGGCGATAT 57.729 52.632 18.40 0.00 46.55 1.63
923 4106 4.720775 TGTATCATTGTATGGCCATGGA 57.279 40.909 29.04 16.70 0.00 3.41
925 4108 5.771153 TGTTGTATCATTGTATGGCCATG 57.229 39.130 29.04 13.04 0.00 3.66
933 4116 5.107414 CGACCGTGTTTGTTGTATCATTGTA 60.107 40.000 0.00 0.00 0.00 2.41
936 4119 4.059511 TCGACCGTGTTTGTTGTATCATT 58.940 39.130 0.00 0.00 0.00 2.57
938 4121 3.095102 TCGACCGTGTTTGTTGTATCA 57.905 42.857 0.00 0.00 0.00 2.15
939 4122 3.659876 CGTTCGACCGTGTTTGTTGTATC 60.660 47.826 0.00 0.00 0.00 2.24
941 4124 1.587490 CGTTCGACCGTGTTTGTTGTA 59.413 47.619 0.00 0.00 0.00 2.41
942 4125 0.370958 CGTTCGACCGTGTTTGTTGT 59.629 50.000 0.00 0.00 0.00 3.32
943 4126 0.922111 GCGTTCGACCGTGTTTGTTG 60.922 55.000 3.79 0.00 0.00 3.33
944 4127 1.349282 GCGTTCGACCGTGTTTGTT 59.651 52.632 3.79 0.00 0.00 2.83
948 4131 0.658897 ATTTTGCGTTCGACCGTGTT 59.341 45.000 3.79 0.00 0.00 3.32
954 4137 4.084718 CGAAACTGTTATTTTGCGTTCGAC 59.915 41.667 0.00 0.00 0.00 4.20
966 4149 4.425520 GAGCAGAGTAGCGAAACTGTTAT 58.574 43.478 0.00 0.00 40.15 1.89
968 4151 2.610727 GGAGCAGAGTAGCGAAACTGTT 60.611 50.000 0.00 0.00 40.15 3.16
971 4154 0.171455 CGGAGCAGAGTAGCGAAACT 59.829 55.000 0.00 0.00 40.15 2.66
981 4164 0.740868 TTTTGATCGCCGGAGCAGAG 60.741 55.000 5.05 0.00 40.14 3.35
1009 4538 0.110147 GATACGATCTGGACTCCGCG 60.110 60.000 0.00 0.00 0.00 6.46
1035 4564 5.237127 CGTTTGATAATCTGGCTTGAGCATA 59.763 40.000 5.24 0.00 44.36 3.14
1039 4568 4.260538 GCTCGTTTGATAATCTGGCTTGAG 60.261 45.833 0.00 0.00 0.00 3.02
1072 4601 3.462678 GACGGTCTCAGGCTCCCC 61.463 72.222 0.00 0.00 0.00 4.81
1173 4711 1.299926 GAGGTGTTCGACTGCGTGT 60.300 57.895 0.00 0.00 38.98 4.49
1857 14684 1.802508 CGACACATTGCTCGCCATAGA 60.803 52.381 0.00 0.00 0.00 1.98
1954 14782 0.407528 TTGCCCAGATAACCCTGCAA 59.592 50.000 0.00 0.00 36.46 4.08
1955 14783 0.323360 GTTGCCCAGATAACCCTGCA 60.323 55.000 0.00 0.00 32.97 4.41
1986 14814 4.008933 GTGGACCTGCCTGCGACT 62.009 66.667 0.00 0.00 37.63 4.18
2053 14881 3.884774 AGCCACGGCCTGGTTCAA 61.885 61.111 18.80 0.00 42.99 2.69
2125 14953 2.288886 ACTCGGACAAGTACTTGAAGCC 60.289 50.000 36.14 29.14 42.93 4.35
2414 20384 1.073199 GCACCTTGCACCTACCACT 59.927 57.895 0.00 0.00 44.26 4.00
2457 20434 7.324178 ACAGTAGAGTTCCATTGTATCTGAAC 58.676 38.462 0.00 0.00 37.86 3.18
2552 20623 5.635280 CGTATGTGCTAATAATGGAGTCTGG 59.365 44.000 0.00 0.00 0.00 3.86
2561 20633 3.064207 CACGGGCGTATGTGCTAATAAT 58.936 45.455 0.00 0.00 34.52 1.28
2565 20650 4.506005 CACGGGCGTATGTGCTAA 57.494 55.556 0.00 0.00 34.52 3.09
2680 20774 3.058224 GGTCTTGAGCCATTACAACACAC 60.058 47.826 0.00 0.00 0.00 3.82
2719 20880 3.507162 AATGCCGATGATGGGTAATGA 57.493 42.857 0.00 0.00 0.00 2.57
2732 20893 4.691685 AGTTTGTTTATGTCGTAATGCCGA 59.308 37.500 0.00 0.00 33.79 5.54
2739 20901 5.856156 TCCAAGGAGTTTGTTTATGTCGTA 58.144 37.500 0.00 0.00 34.87 3.43
2747 20909 3.239449 GGGGATTCCAAGGAGTTTGTTT 58.761 45.455 4.80 0.00 34.87 2.83
2761 20923 0.186873 ATGTGGAGCATGGGGGATTC 59.813 55.000 0.00 0.00 36.26 2.52
2780 20944 9.340695 CGCTTTCAATATTTATGTTGTTTCTCA 57.659 29.630 0.00 0.00 31.77 3.27
2800 20964 3.246936 AGACGGTCTTTGTAAACGCTTTC 59.753 43.478 4.45 0.00 0.00 2.62
2801 20965 3.200483 AGACGGTCTTTGTAAACGCTTT 58.800 40.909 4.45 0.00 0.00 3.51
2802 20966 2.830104 AGACGGTCTTTGTAAACGCTT 58.170 42.857 4.45 0.00 0.00 4.68
2872 21036 0.396811 CCGGACTTGGGAGTTTCTGT 59.603 55.000 0.00 0.00 35.88 3.41
2873 21037 0.955919 GCCGGACTTGGGAGTTTCTG 60.956 60.000 5.05 0.00 35.88 3.02
2889 21054 1.210155 GCCAAAGTACAAGCAGCCG 59.790 57.895 0.00 0.00 0.00 5.52
2891 21056 0.110192 GTCGCCAAAGTACAAGCAGC 60.110 55.000 0.00 0.00 0.00 5.25
2952 21131 8.454106 TGTGCTATATTTTTCTGAGAAGAAAGC 58.546 33.333 11.51 11.51 38.76 3.51
3054 21236 7.915293 TGTCAGAACTGTTTAACTCAAAAGA 57.085 32.000 0.00 0.00 0.00 2.52
3099 21281 9.478768 TTGTTGTCAATAACTAAGACACGATAA 57.521 29.630 0.00 0.00 41.53 1.75
3106 21288 8.025243 TCCGAATTGTTGTCAATAACTAAGAC 57.975 34.615 0.00 0.00 42.60 3.01
3235 21423 9.965902 ACATCACCCTATATCCTGAAATAAATC 57.034 33.333 0.00 0.00 0.00 2.17
3252 21440 1.352017 TCACAGAATGCACATCACCCT 59.648 47.619 0.00 0.00 42.53 4.34
3253 21441 1.825090 TCACAGAATGCACATCACCC 58.175 50.000 0.00 0.00 42.53 4.61
3321 21511 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
3322 21512 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
3324 21514 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
3349 21544 3.336509 ACACCCTACTCCTATGAGCAT 57.663 47.619 0.00 0.00 42.74 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.