Multiple sequence alignment - TraesCS2B01G048600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G048600 chr2B 100.000 3368 0 0 1 3368 24099682 24096315 0.000000e+00 6220.0
1 TraesCS2B01G048600 chr2B 83.853 1443 182 25 952 2368 772982296 772980879 0.000000e+00 1327.0
2 TraesCS2B01G048600 chr2B 83.814 1421 176 27 988 2374 24217020 24218420 0.000000e+00 1301.0
3 TraesCS2B01G048600 chr2B 81.017 1396 208 23 998 2353 24110294 24108916 0.000000e+00 1057.0
4 TraesCS2B01G048600 chr2B 80.698 1404 219 26 988 2353 24124401 24125790 0.000000e+00 1044.0
5 TraesCS2B01G048600 chr2B 83.379 1107 149 21 1213 2299 8507286 8508377 0.000000e+00 992.0
6 TraesCS2B01G048600 chr2B 80.211 662 100 13 1274 1921 8241068 8241712 5.090000e-128 468.0
7 TraesCS2B01G048600 chr2B 85.000 100 13 2 2860 2958 13486581 13486483 2.140000e-17 100.0
8 TraesCS2B01G048600 chr2A 86.937 1998 146 41 438 2369 15450626 15448678 0.000000e+00 2137.0
9 TraesCS2B01G048600 chr2A 83.732 1420 179 30 988 2374 15602445 15603845 0.000000e+00 1295.0
10 TraesCS2B01G048600 chr2A 86.467 968 106 13 991 1947 2895347 2896300 0.000000e+00 1038.0
11 TraesCS2B01G048600 chr2A 80.556 1404 221 35 988 2353 15460271 15458882 0.000000e+00 1033.0
12 TraesCS2B01G048600 chr2A 80.199 1404 214 38 988 2353 15529973 15528596 0.000000e+00 994.0
13 TraesCS2B01G048600 chr2A 80.129 1394 224 27 997 2353 15467791 15466414 0.000000e+00 990.0
14 TraesCS2B01G048600 chr2A 91.584 404 31 2 22 425 15451010 15450610 3.800000e-154 555.0
15 TraesCS2B01G048600 chr2D 84.258 1442 176 29 952 2368 630011254 630009839 0.000000e+00 1358.0
16 TraesCS2B01G048600 chr2D 84.577 1420 161 25 988 2374 13508833 13510227 0.000000e+00 1356.0
17 TraesCS2B01G048600 chr2D 82.942 1407 190 30 988 2371 2770650 2769271 0.000000e+00 1223.0
18 TraesCS2B01G048600 chr2D 81.389 1397 201 31 997 2353 13476038 13474661 0.000000e+00 1085.0
19 TraesCS2B01G048600 chr2D 80.389 1387 209 38 988 2353 13483007 13481663 0.000000e+00 996.0
20 TraesCS2B01G048600 chr2D 91.765 425 30 4 1 425 13218299 13218718 1.350000e-163 586.0
21 TraesCS2B01G048600 chr2D 84.655 580 44 21 687 1248 13439975 13439423 1.380000e-148 536.0
22 TraesCS2B01G048600 chr2D 89.667 300 23 4 1 300 13440265 13439974 3.170000e-100 375.0
23 TraesCS2B01G048600 chr2D 86.636 217 16 3 2183 2397 13439330 13439125 9.400000e-56 228.0
24 TraesCS2B01G048600 chr2D 95.000 100 5 0 3136 3235 13435389 13435290 1.250000e-34 158.0
25 TraesCS2B01G048600 chr2D 100.000 42 0 0 3291 3332 13435261 13435220 1.000000e-10 78.7
26 TraesCS2B01G048600 chr4D 73.965 1329 242 67 1077 2341 489506687 489507975 3.080000e-120 442.0
27 TraesCS2B01G048600 chr4B 73.749 1219 236 54 1189 2356 627555922 627554737 5.230000e-108 401.0
28 TraesCS2B01G048600 chr4B 73.862 681 133 36 1700 2356 627812276 627811617 2.610000e-56 230.0
29 TraesCS2B01G048600 chr5A 72.557 1013 194 47 1396 2356 671093862 671092882 1.550000e-63 254.0
30 TraesCS2B01G048600 chr6D 90.698 86 5 3 2882 2964 211025690 211025605 9.880000e-21 111.0
31 TraesCS2B01G048600 chr7A 76.296 135 21 9 679 802 553380755 553380621 1.010000e-05 62.1
32 TraesCS2B01G048600 chr7A 97.059 34 1 0 2891 2924 118102036 118102003 1.310000e-04 58.4
33 TraesCS2B01G048600 chr1A 72.558 215 46 12 533 738 63482028 63482238 1.310000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G048600 chr2B 24096315 24099682 3367 True 6220.00 6220 100.0000 1 3368 1 chr2B.!!$R2 3367
1 TraesCS2B01G048600 chr2B 772980879 772982296 1417 True 1327.00 1327 83.8530 952 2368 1 chr2B.!!$R4 1416
2 TraesCS2B01G048600 chr2B 24217020 24218420 1400 False 1301.00 1301 83.8140 988 2374 1 chr2B.!!$F4 1386
3 TraesCS2B01G048600 chr2B 24108916 24110294 1378 True 1057.00 1057 81.0170 998 2353 1 chr2B.!!$R3 1355
4 TraesCS2B01G048600 chr2B 24124401 24125790 1389 False 1044.00 1044 80.6980 988 2353 1 chr2B.!!$F3 1365
5 TraesCS2B01G048600 chr2B 8507286 8508377 1091 False 992.00 992 83.3790 1213 2299 1 chr2B.!!$F2 1086
6 TraesCS2B01G048600 chr2B 8241068 8241712 644 False 468.00 468 80.2110 1274 1921 1 chr2B.!!$F1 647
7 TraesCS2B01G048600 chr2A 15448678 15451010 2332 True 1346.00 2137 89.2605 22 2369 2 chr2A.!!$R4 2347
8 TraesCS2B01G048600 chr2A 15602445 15603845 1400 False 1295.00 1295 83.7320 988 2374 1 chr2A.!!$F2 1386
9 TraesCS2B01G048600 chr2A 2895347 2896300 953 False 1038.00 1038 86.4670 991 1947 1 chr2A.!!$F1 956
10 TraesCS2B01G048600 chr2A 15458882 15460271 1389 True 1033.00 1033 80.5560 988 2353 1 chr2A.!!$R1 1365
11 TraesCS2B01G048600 chr2A 15528596 15529973 1377 True 994.00 994 80.1990 988 2353 1 chr2A.!!$R3 1365
12 TraesCS2B01G048600 chr2A 15466414 15467791 1377 True 990.00 990 80.1290 997 2353 1 chr2A.!!$R2 1356
13 TraesCS2B01G048600 chr2D 630009839 630011254 1415 True 1358.00 1358 84.2580 952 2368 1 chr2D.!!$R4 1416
14 TraesCS2B01G048600 chr2D 13508833 13510227 1394 False 1356.00 1356 84.5770 988 2374 1 chr2D.!!$F2 1386
15 TraesCS2B01G048600 chr2D 2769271 2770650 1379 True 1223.00 1223 82.9420 988 2371 1 chr2D.!!$R1 1383
16 TraesCS2B01G048600 chr2D 13474661 13476038 1377 True 1085.00 1085 81.3890 997 2353 1 chr2D.!!$R2 1356
17 TraesCS2B01G048600 chr2D 13481663 13483007 1344 True 996.00 996 80.3890 988 2353 1 chr2D.!!$R3 1365
18 TraesCS2B01G048600 chr2D 13435220 13440265 5045 True 275.14 536 91.1916 1 3332 5 chr2D.!!$R5 3331
19 TraesCS2B01G048600 chr4D 489506687 489507975 1288 False 442.00 442 73.9650 1077 2341 1 chr4D.!!$F1 1264
20 TraesCS2B01G048600 chr4B 627554737 627555922 1185 True 401.00 401 73.7490 1189 2356 1 chr4B.!!$R1 1167
21 TraesCS2B01G048600 chr4B 627811617 627812276 659 True 230.00 230 73.8620 1700 2356 1 chr4B.!!$R2 656
22 TraesCS2B01G048600 chr5A 671092882 671093862 980 True 254.00 254 72.5570 1396 2356 1 chr5A.!!$R1 960

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 503 0.03438 GGAAGGGGTAGGCTTTCCAC 60.034 60.0 9.52 6.34 39.09 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2460 2713 0.034756 ACAGCACACAAGATACGGCA 59.965 50.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.262183 AGCGACAGTCAGGACAGAG 58.738 57.895 0.41 0.00 0.00 3.35
19 20 1.214062 GCGACAGTCAGGACAGAGG 59.786 63.158 0.41 0.00 0.00 3.69
20 21 1.214062 CGACAGTCAGGACAGAGGC 59.786 63.158 0.41 0.00 0.00 4.70
28 29 2.436292 GGACAGAGGCAGCAGCAG 60.436 66.667 2.65 0.00 44.61 4.24
81 82 5.188434 TCTTAGTTCCTGCCAATCATTCAG 58.812 41.667 0.00 0.00 0.00 3.02
140 141 4.782019 ATAAAATCAGGCTGCAAAACGA 57.218 36.364 10.34 0.00 0.00 3.85
161 162 4.492570 CGACTTCGAATTTGGTATGTGCTC 60.493 45.833 0.00 0.00 43.02 4.26
223 224 3.563223 AGATTAAGCTCGTAGGTGCCTA 58.437 45.455 5.90 0.00 0.00 3.93
249 250 4.876679 AGTCGATAAGAACATCGTCTCTCA 59.123 41.667 5.51 0.00 46.21 3.27
264 265 4.184629 GTCTCTCACGCAAAGGATATGTT 58.815 43.478 0.00 0.00 0.00 2.71
265 266 4.033358 GTCTCTCACGCAAAGGATATGTTG 59.967 45.833 0.00 0.00 0.00 3.33
270 271 6.016693 TCTCACGCAAAGGATATGTTGAAAAA 60.017 34.615 0.00 0.00 0.00 1.94
338 339 8.715998 GTGAATTGATTAGTATGGTATCTGCAG 58.284 37.037 7.63 7.63 0.00 4.41
351 352 4.586841 GGTATCTGCAGGACTTGAGATAGT 59.413 45.833 15.13 0.00 32.02 2.12
359 360 5.578727 GCAGGACTTGAGATAGTTGTAGTTG 59.421 44.000 0.00 0.00 0.00 3.16
365 366 7.093992 ACTTGAGATAGTTGTAGTTGAAGAGC 58.906 38.462 0.00 0.00 0.00 4.09
366 367 6.590234 TGAGATAGTTGTAGTTGAAGAGCA 57.410 37.500 0.00 0.00 0.00 4.26
367 368 6.993079 TGAGATAGTTGTAGTTGAAGAGCAA 58.007 36.000 0.00 0.00 0.00 3.91
376 377 4.749245 AGTTGAAGAGCAAATGTAACGG 57.251 40.909 0.00 0.00 38.44 4.44
394 395 4.482952 ACGGAAAGTAATGGAACTAGGG 57.517 45.455 0.00 0.00 0.00 3.53
408 409 0.984230 CTAGGGAACAAGAGGCCACA 59.016 55.000 5.01 0.00 0.00 4.17
409 410 1.351017 CTAGGGAACAAGAGGCCACAA 59.649 52.381 5.01 0.00 0.00 3.33
410 411 0.111253 AGGGAACAAGAGGCCACAAG 59.889 55.000 5.01 0.00 0.00 3.16
411 412 0.178990 GGGAACAAGAGGCCACAAGT 60.179 55.000 5.01 0.00 0.00 3.16
412 413 1.073284 GGGAACAAGAGGCCACAAGTA 59.927 52.381 5.01 0.00 0.00 2.24
413 414 2.488347 GGGAACAAGAGGCCACAAGTAA 60.488 50.000 5.01 0.00 0.00 2.24
414 415 3.219281 GGAACAAGAGGCCACAAGTAAA 58.781 45.455 5.01 0.00 0.00 2.01
415 416 3.826729 GGAACAAGAGGCCACAAGTAAAT 59.173 43.478 5.01 0.00 0.00 1.40
416 417 5.007682 GGAACAAGAGGCCACAAGTAAATA 58.992 41.667 5.01 0.00 0.00 1.40
417 418 5.475564 GGAACAAGAGGCCACAAGTAAATAA 59.524 40.000 5.01 0.00 0.00 1.40
418 419 6.152831 GGAACAAGAGGCCACAAGTAAATAAT 59.847 38.462 5.01 0.00 0.00 1.28
419 420 7.338449 GGAACAAGAGGCCACAAGTAAATAATA 59.662 37.037 5.01 0.00 0.00 0.98
420 421 8.644374 AACAAGAGGCCACAAGTAAATAATAA 57.356 30.769 5.01 0.00 0.00 1.40
421 422 8.051901 ACAAGAGGCCACAAGTAAATAATAAC 57.948 34.615 5.01 0.00 0.00 1.89
422 423 7.888546 ACAAGAGGCCACAAGTAAATAATAACT 59.111 33.333 5.01 0.00 0.00 2.24
423 424 7.865706 AGAGGCCACAAGTAAATAATAACTG 57.134 36.000 5.01 0.00 0.00 3.16
424 425 7.630082 AGAGGCCACAAGTAAATAATAACTGA 58.370 34.615 5.01 0.00 0.00 3.41
425 426 7.553044 AGAGGCCACAAGTAAATAATAACTGAC 59.447 37.037 5.01 0.00 0.00 3.51
426 427 6.602009 AGGCCACAAGTAAATAATAACTGACC 59.398 38.462 5.01 0.00 0.00 4.02
427 428 6.183360 GGCCACAAGTAAATAATAACTGACCC 60.183 42.308 0.00 0.00 0.00 4.46
428 429 6.183360 GCCACAAGTAAATAATAACTGACCCC 60.183 42.308 0.00 0.00 0.00 4.95
429 430 6.037830 CCACAAGTAAATAATAACTGACCCCG 59.962 42.308 0.00 0.00 0.00 5.73
430 431 5.587443 ACAAGTAAATAATAACTGACCCCGC 59.413 40.000 0.00 0.00 0.00 6.13
431 432 5.362105 AGTAAATAATAACTGACCCCGCA 57.638 39.130 0.00 0.00 0.00 5.69
432 433 5.747342 AGTAAATAATAACTGACCCCGCAA 58.253 37.500 0.00 0.00 0.00 4.85
433 434 6.181908 AGTAAATAATAACTGACCCCGCAAA 58.818 36.000 0.00 0.00 0.00 3.68
434 435 5.986501 AAATAATAACTGACCCCGCAAAA 57.013 34.783 0.00 0.00 0.00 2.44
435 436 5.986501 AATAATAACTGACCCCGCAAAAA 57.013 34.783 0.00 0.00 0.00 1.94
473 474 0.396556 AAGTGGGCGGTGTTTCCTTT 60.397 50.000 0.00 0.00 0.00 3.11
481 482 2.809299 GCGGTGTTTCCTTTAGTGGAGT 60.809 50.000 0.00 0.00 37.43 3.85
484 486 3.181448 GGTGTTTCCTTTAGTGGAGTGGA 60.181 47.826 0.00 0.00 37.43 4.02
501 503 0.034380 GGAAGGGGTAGGCTTTCCAC 60.034 60.000 9.52 6.34 39.09 4.02
520 529 3.452474 CACGGAGAGGTTCATCTTCATC 58.548 50.000 0.00 0.00 0.00 2.92
530 539 4.391216 GGTTCATCTTCATCTGTGTGTCTG 59.609 45.833 0.00 0.00 0.00 3.51
547 574 5.174395 GTGTCTGCATGTACTTCTCTTCAT 58.826 41.667 0.00 0.00 0.00 2.57
548 575 5.290643 GTGTCTGCATGTACTTCTCTTCATC 59.709 44.000 0.00 0.00 0.00 2.92
549 576 4.502282 GTCTGCATGTACTTCTCTTCATCG 59.498 45.833 0.00 0.00 0.00 3.84
550 577 3.785486 TGCATGTACTTCTCTTCATCGG 58.215 45.455 0.00 0.00 0.00 4.18
551 578 2.541762 GCATGTACTTCTCTTCATCGGC 59.458 50.000 0.00 0.00 0.00 5.54
552 579 2.561733 TGTACTTCTCTTCATCGGCG 57.438 50.000 0.00 0.00 0.00 6.46
583 618 3.583276 TAAGTGTGCTGGTCCCGCG 62.583 63.158 0.00 0.00 0.00 6.46
599 634 1.216444 GCGAGGTCTCAGCATGACA 59.784 57.895 0.00 0.00 42.56 3.58
601 636 1.354040 CGAGGTCTCAGCATGACAAC 58.646 55.000 0.00 0.00 42.56 3.32
604 639 2.999355 GAGGTCTCAGCATGACAACTTC 59.001 50.000 0.00 0.00 42.56 3.01
606 641 2.289945 GGTCTCAGCATGACAACTTCCT 60.290 50.000 0.00 0.00 42.56 3.36
609 644 2.740981 CTCAGCATGACAACTTCCTGAC 59.259 50.000 0.00 0.00 42.56 3.51
616 651 5.728471 CATGACAACTTCCTGACTGTCTAT 58.272 41.667 9.51 0.00 39.15 1.98
619 654 5.481824 TGACAACTTCCTGACTGTCTATCAT 59.518 40.000 9.51 0.00 39.15 2.45
627 662 9.906660 CTTCCTGACTGTCTATCATAATAAGTC 57.093 37.037 9.51 0.00 34.52 3.01
633 668 8.356000 ACTGTCTATCATAATAAGTCTAGCCC 57.644 38.462 0.00 0.00 0.00 5.19
641 676 8.410673 TCATAATAAGTCTAGCCCAACTCTAG 57.589 38.462 0.00 0.00 35.90 2.43
645 680 3.358118 AGTCTAGCCCAACTCTAGTGAC 58.642 50.000 0.00 0.00 36.00 3.67
646 681 3.090037 GTCTAGCCCAACTCTAGTGACA 58.910 50.000 0.00 0.00 36.00 3.58
647 682 3.702045 GTCTAGCCCAACTCTAGTGACAT 59.298 47.826 0.00 0.00 36.00 3.06
649 684 5.536916 GTCTAGCCCAACTCTAGTGACATAT 59.463 44.000 0.00 0.00 36.00 1.78
652 687 3.388024 GCCCAACTCTAGTGACATATGGA 59.612 47.826 7.80 0.00 0.00 3.41
653 688 4.740934 GCCCAACTCTAGTGACATATGGAC 60.741 50.000 7.80 3.40 0.00 4.02
658 693 5.377478 ACTCTAGTGACATATGGACGATGA 58.623 41.667 7.80 4.31 0.00 2.92
660 695 3.355626 AGTGACATATGGACGATGACG 57.644 47.619 7.80 0.00 45.75 4.35
683 718 2.222027 GGCAATGCCTATAGTTCGCTT 58.778 47.619 18.47 0.00 46.69 4.68
689 724 2.496070 TGCCTATAGTTCGCTTCAGTGT 59.504 45.455 0.00 0.00 0.00 3.55
785 825 9.657419 ACATAATGAATTGATTGAAAGTTTCCC 57.343 29.630 13.01 3.43 0.00 3.97
820 860 0.788383 TGGGTATATAGGCGGGAGGT 59.212 55.000 0.00 0.00 0.00 3.85
826 866 4.099113 GGTATATAGGCGGGAGGTGATAAC 59.901 50.000 0.00 0.00 0.00 1.89
830 870 2.404559 AGGCGGGAGGTGATAACATAA 58.595 47.619 0.00 0.00 0.00 1.90
831 871 2.368875 AGGCGGGAGGTGATAACATAAG 59.631 50.000 0.00 0.00 0.00 1.73
832 872 2.367567 GGCGGGAGGTGATAACATAAGA 59.632 50.000 0.00 0.00 0.00 2.10
833 873 3.008049 GGCGGGAGGTGATAACATAAGAT 59.992 47.826 0.00 0.00 0.00 2.40
834 874 4.222145 GGCGGGAGGTGATAACATAAGATA 59.778 45.833 0.00 0.00 0.00 1.98
835 875 5.104900 GGCGGGAGGTGATAACATAAGATAT 60.105 44.000 0.00 0.00 0.00 1.63
836 876 6.097839 GGCGGGAGGTGATAACATAAGATATA 59.902 42.308 0.00 0.00 0.00 0.86
837 877 7.203910 GCGGGAGGTGATAACATAAGATATAG 58.796 42.308 0.00 0.00 0.00 1.31
838 878 7.147880 GCGGGAGGTGATAACATAAGATATAGT 60.148 40.741 0.00 0.00 0.00 2.12
839 879 8.191446 CGGGAGGTGATAACATAAGATATAGTG 58.809 40.741 0.00 0.00 0.00 2.74
840 880 9.256228 GGGAGGTGATAACATAAGATATAGTGA 57.744 37.037 0.00 0.00 0.00 3.41
899 971 4.977393 GGCGAATAAAGGCCTCCA 57.023 55.556 5.23 0.00 45.93 3.86
900 972 2.405143 GGCGAATAAAGGCCTCCAC 58.595 57.895 5.23 0.00 45.93 4.02
901 973 0.107165 GGCGAATAAAGGCCTCCACT 60.107 55.000 5.23 0.00 45.93 4.00
902 974 1.300481 GCGAATAAAGGCCTCCACTC 58.700 55.000 5.23 0.00 0.00 3.51
903 975 1.954927 CGAATAAAGGCCTCCACTCC 58.045 55.000 5.23 0.00 0.00 3.85
904 976 1.209504 CGAATAAAGGCCTCCACTCCA 59.790 52.381 5.23 0.00 0.00 3.86
955 1027 2.579241 AAGACGCACGATCGACCTCG 62.579 60.000 24.34 19.29 44.14 4.63
974 1046 4.339530 CCTCGAACTCACATTCTCCATAGA 59.660 45.833 0.00 0.00 0.00 1.98
978 1054 2.703007 ACTCACATTCTCCATAGAGGCC 59.297 50.000 0.00 0.00 40.83 5.19
983 1059 2.254152 TTCTCCATAGAGGCCACTGT 57.746 50.000 13.60 2.71 40.83 3.55
986 1062 1.833630 CTCCATAGAGGCCACTGTTCA 59.166 52.381 13.60 0.00 36.39 3.18
1068 1151 3.368427 CGGAGTATCAAAAGAGCTCACCA 60.368 47.826 17.77 0.00 36.25 4.17
1123 1206 2.443952 ATCTCCGGCGGATCACCA 60.444 61.111 31.23 11.46 35.59 4.17
1653 1817 3.470888 CCCGTGCCGATCCCTCTT 61.471 66.667 0.00 0.00 0.00 2.85
1660 1824 1.338136 GCCGATCCCTCTTCCCTTCA 61.338 60.000 0.00 0.00 0.00 3.02
1682 1846 3.127533 GGTGCAGGACATGGCGAC 61.128 66.667 0.00 0.00 0.00 5.19
1933 2122 1.299976 GTGAAGGGCATTCCGGAGT 59.700 57.895 9.66 0.00 41.52 3.85
2267 2483 0.721718 CTGATCACGGTTTTCGAGGC 59.278 55.000 0.00 0.00 42.43 4.70
2376 2601 4.244326 TCCGTCTAGGAGCTCAGC 57.756 61.111 17.19 0.00 45.98 4.26
2377 2602 1.610327 TCCGTCTAGGAGCTCAGCT 59.390 57.895 17.19 0.00 45.98 4.24
2391 2617 0.388294 TCAGCTGAGAGATGATGGCG 59.612 55.000 13.74 0.00 35.46 5.69
2392 2618 1.069427 AGCTGAGAGATGATGGCGC 59.931 57.895 0.00 0.00 0.00 6.53
2397 2623 2.356793 GAGATGATGGCGCCGGAG 60.357 66.667 23.90 1.55 0.00 4.63
2398 2624 4.615815 AGATGATGGCGCCGGAGC 62.616 66.667 23.29 23.29 0.00 4.70
2432 2685 4.504916 CCGACGGAGAGCCTGCTG 62.505 72.222 8.64 0.00 0.00 4.41
2433 2686 4.504916 CGACGGAGAGCCTGCTGG 62.505 72.222 5.03 5.03 0.00 4.85
2434 2687 3.386237 GACGGAGAGCCTGCTGGT 61.386 66.667 11.69 0.00 35.27 4.00
2435 2688 2.925170 ACGGAGAGCCTGCTGGTT 60.925 61.111 11.69 4.88 35.27 3.67
2436 2689 2.125350 CGGAGAGCCTGCTGGTTC 60.125 66.667 17.19 17.19 42.94 3.62
2437 2690 2.270527 GGAGAGCCTGCTGGTTCC 59.729 66.667 20.44 15.77 43.54 3.62
2439 2692 3.672295 GAGAGCCTGCTGGTTCCGG 62.672 68.421 20.44 0.00 43.54 5.14
2441 2694 4.335647 AGCCTGCTGGTTCCGGTG 62.336 66.667 11.69 0.00 35.27 4.94
2443 2696 4.335647 CCTGCTGGTTCCGGTGCT 62.336 66.667 0.00 0.00 0.00 4.40
2447 2700 0.179015 TGCTGGTTCCGGTGCTTTTA 60.179 50.000 0.00 0.00 0.00 1.52
2448 2701 1.173913 GCTGGTTCCGGTGCTTTTAT 58.826 50.000 0.00 0.00 0.00 1.40
2449 2702 1.132453 GCTGGTTCCGGTGCTTTTATC 59.868 52.381 0.00 0.00 0.00 1.75
2451 2704 3.081804 CTGGTTCCGGTGCTTTTATCTT 58.918 45.455 0.00 0.00 0.00 2.40
2452 2705 2.817258 TGGTTCCGGTGCTTTTATCTTG 59.183 45.455 0.00 0.00 0.00 3.02
2456 2709 5.048573 GGTTCCGGTGCTTTTATCTTGTTTA 60.049 40.000 0.00 0.00 0.00 2.01
2457 2710 6.440436 GTTCCGGTGCTTTTATCTTGTTTAA 58.560 36.000 0.00 0.00 0.00 1.52
2459 2712 7.040473 TCCGGTGCTTTTATCTTGTTTAAAA 57.960 32.000 0.00 0.00 0.00 1.52
2460 2713 7.662897 TCCGGTGCTTTTATCTTGTTTAAAAT 58.337 30.769 0.00 0.00 30.48 1.82
2461 2714 7.596995 TCCGGTGCTTTTATCTTGTTTAAAATG 59.403 33.333 0.00 0.00 30.48 2.32
2462 2715 7.226772 CGGTGCTTTTATCTTGTTTAAAATGC 58.773 34.615 0.00 0.00 30.48 3.56
2463 2716 7.518161 GGTGCTTTTATCTTGTTTAAAATGCC 58.482 34.615 0.00 0.00 30.48 4.40
2464 2717 7.226772 GTGCTTTTATCTTGTTTAAAATGCCG 58.773 34.615 0.00 0.00 30.48 5.69
2465 2718 6.926272 TGCTTTTATCTTGTTTAAAATGCCGT 59.074 30.769 0.00 0.00 30.48 5.68
2466 2719 8.082852 TGCTTTTATCTTGTTTAAAATGCCGTA 58.917 29.630 0.00 0.00 30.48 4.02
2467 2720 9.083080 GCTTTTATCTTGTTTAAAATGCCGTAT 57.917 29.630 0.00 0.00 30.48 3.06
2474 2727 6.320494 TGTTTAAAATGCCGTATCTTGTGT 57.680 33.333 0.00 0.00 0.00 3.72
2475 2728 6.146216 TGTTTAAAATGCCGTATCTTGTGTG 58.854 36.000 0.00 0.00 0.00 3.82
2476 2729 2.919666 AAATGCCGTATCTTGTGTGC 57.080 45.000 0.00 0.00 0.00 4.57
2477 2730 2.113860 AATGCCGTATCTTGTGTGCT 57.886 45.000 0.00 0.00 0.00 4.40
2478 2731 1.372582 ATGCCGTATCTTGTGTGCTG 58.627 50.000 0.00 0.00 0.00 4.41
2479 2732 0.034756 TGCCGTATCTTGTGTGCTGT 59.965 50.000 0.00 0.00 0.00 4.40
2480 2733 1.273886 TGCCGTATCTTGTGTGCTGTA 59.726 47.619 0.00 0.00 0.00 2.74
2481 2734 1.927174 GCCGTATCTTGTGTGCTGTAG 59.073 52.381 0.00 0.00 0.00 2.74
2482 2735 2.674177 GCCGTATCTTGTGTGCTGTAGT 60.674 50.000 0.00 0.00 0.00 2.73
2483 2736 3.428452 GCCGTATCTTGTGTGCTGTAGTA 60.428 47.826 0.00 0.00 0.00 1.82
2484 2737 4.740268 CCGTATCTTGTGTGCTGTAGTAA 58.260 43.478 0.00 0.00 0.00 2.24
2485 2738 5.165676 CCGTATCTTGTGTGCTGTAGTAAA 58.834 41.667 0.00 0.00 0.00 2.01
2486 2739 5.636121 CCGTATCTTGTGTGCTGTAGTAAAA 59.364 40.000 0.00 0.00 0.00 1.52
2487 2740 6.400727 CCGTATCTTGTGTGCTGTAGTAAAAC 60.401 42.308 0.00 0.00 0.00 2.43
2492 2745 6.700081 TCTTGTGTGCTGTAGTAAAACTAGTG 59.300 38.462 0.00 0.00 30.12 2.74
2498 2751 9.582431 TGTGCTGTAGTAAAACTAGTGATAATC 57.418 33.333 0.00 0.00 30.12 1.75
2511 2764 1.271001 TGATAATCCTGATGCCCAGCG 60.271 52.381 0.00 0.00 41.57 5.18
2512 2765 0.767375 ATAATCCTGATGCCCAGCGT 59.233 50.000 0.00 0.00 41.57 5.07
2513 2766 0.106708 TAATCCTGATGCCCAGCGTC 59.893 55.000 1.79 1.79 44.02 5.19
2530 2846 3.315191 AGCGTCAAGTTTGTTGCTGTAAT 59.685 39.130 10.96 0.00 37.95 1.89
2533 2849 5.683743 GCGTCAAGTTTGTTGCTGTAATAAA 59.316 36.000 0.00 0.00 0.00 1.40
2534 2850 6.129457 GCGTCAAGTTTGTTGCTGTAATAAAG 60.129 38.462 1.03 0.00 31.23 1.85
2535 2851 6.910433 CGTCAAGTTTGTTGCTGTAATAAAGT 59.090 34.615 1.03 2.09 35.37 2.66
2567 2900 0.106708 TGGATACGAATGCCTCTGCC 59.893 55.000 0.00 0.00 42.51 4.85
2569 2902 1.506493 GATACGAATGCCTCTGCCAG 58.494 55.000 0.00 0.00 36.33 4.85
2570 2903 1.069204 GATACGAATGCCTCTGCCAGA 59.931 52.381 0.00 0.00 36.33 3.86
2571 2904 0.461548 TACGAATGCCTCTGCCAGAG 59.538 55.000 14.99 14.99 41.96 3.35
2572 2905 2.178890 CGAATGCCTCTGCCAGAGC 61.179 63.158 16.49 11.97 40.98 4.09
2574 2907 0.814812 GAATGCCTCTGCCAGAGCTC 60.815 60.000 16.49 5.27 40.98 4.09
2575 2908 1.559965 AATGCCTCTGCCAGAGCTCA 61.560 55.000 16.49 15.29 40.98 4.26
2576 2909 2.125188 GCCTCTGCCAGAGCTCAC 60.125 66.667 16.49 5.44 40.98 3.51
2577 2910 2.658064 GCCTCTGCCAGAGCTCACT 61.658 63.158 16.49 0.00 40.98 3.41
2579 2912 0.324285 CCTCTGCCAGAGCTCACTTT 59.676 55.000 16.49 0.00 40.98 2.66
2582 2915 0.959372 CTGCCAGAGCTCACTTTGGG 60.959 60.000 17.77 8.20 46.14 4.12
2583 2916 1.376466 GCCAGAGCTCACTTTGGGA 59.624 57.895 17.77 0.00 46.14 4.37
2586 2919 1.681166 CCAGAGCTCACTTTGGGATGG 60.681 57.143 17.77 7.49 43.08 3.51
2587 2920 1.280133 CAGAGCTCACTTTGGGATGGA 59.720 52.381 17.77 0.00 0.00 3.41
2588 2921 1.988107 AGAGCTCACTTTGGGATGGAA 59.012 47.619 17.77 0.00 0.00 3.53
2589 2922 2.579860 AGAGCTCACTTTGGGATGGAAT 59.420 45.455 17.77 0.00 0.00 3.01
2590 2923 2.686915 GAGCTCACTTTGGGATGGAATG 59.313 50.000 9.40 0.00 0.00 2.67
2591 2924 1.753073 GCTCACTTTGGGATGGAATGG 59.247 52.381 0.00 0.00 0.00 3.16
2592 2925 1.753073 CTCACTTTGGGATGGAATGGC 59.247 52.381 0.00 0.00 0.00 4.40
2593 2926 1.358787 TCACTTTGGGATGGAATGGCT 59.641 47.619 0.00 0.00 0.00 4.75
2594 2927 2.580322 TCACTTTGGGATGGAATGGCTA 59.420 45.455 0.00 0.00 0.00 3.93
2595 2928 2.689983 CACTTTGGGATGGAATGGCTAC 59.310 50.000 0.00 0.00 0.00 3.58
2596 2929 2.311542 ACTTTGGGATGGAATGGCTACA 59.688 45.455 0.00 0.00 0.00 2.74
2597 2930 2.435372 TTGGGATGGAATGGCTACAC 57.565 50.000 0.00 0.00 0.00 2.90
2598 2931 0.180171 TGGGATGGAATGGCTACACG 59.820 55.000 0.00 0.00 0.00 4.49
2599 2932 0.180406 GGGATGGAATGGCTACACGT 59.820 55.000 0.00 0.00 0.00 4.49
2600 2933 1.583054 GGATGGAATGGCTACACGTC 58.417 55.000 0.00 0.00 0.00 4.34
2601 2934 1.134521 GGATGGAATGGCTACACGTCA 60.135 52.381 0.00 0.00 0.00 4.35
2602 2935 2.205074 GATGGAATGGCTACACGTCAG 58.795 52.381 0.00 0.00 0.00 3.51
2603 2936 0.973632 TGGAATGGCTACACGTCAGT 59.026 50.000 0.00 0.00 0.00 3.41
2604 2937 1.067142 TGGAATGGCTACACGTCAGTC 60.067 52.381 0.00 0.00 41.33 3.51
2605 2938 1.269166 GAATGGCTACACGTCAGTCG 58.731 55.000 0.00 0.00 46.00 4.18
2623 3308 5.912396 TCAGTCGTTCGATTTTCAAATTTGG 59.088 36.000 17.90 1.17 0.00 3.28
2624 3309 4.679654 AGTCGTTCGATTTTCAAATTTGGC 59.320 37.500 17.90 2.81 0.00 4.52
2625 3310 3.984633 TCGTTCGATTTTCAAATTTGGCC 59.015 39.130 17.90 0.00 0.00 5.36
2627 3312 4.210120 CGTTCGATTTTCAAATTTGGCCAA 59.790 37.500 16.05 16.05 0.00 4.52
2628 3313 5.612276 CGTTCGATTTTCAAATTTGGCCAAG 60.612 40.000 19.48 7.23 0.00 3.61
2629 3314 4.954875 TCGATTTTCAAATTTGGCCAAGT 58.045 34.783 19.48 13.82 0.00 3.16
2630 3315 4.987912 TCGATTTTCAAATTTGGCCAAGTC 59.012 37.500 19.48 12.59 0.00 3.01
2631 3316 4.143347 CGATTTTCAAATTTGGCCAAGTCG 60.143 41.667 19.48 18.65 0.00 4.18
2632 3317 4.392921 TTTTCAAATTTGGCCAAGTCGA 57.607 36.364 19.48 13.07 0.00 4.20
2635 3320 3.911868 TCAAATTTGGCCAAGTCGATTG 58.088 40.909 19.48 16.52 38.74 2.67
2636 3321 3.571828 TCAAATTTGGCCAAGTCGATTGA 59.428 39.130 19.48 18.46 41.83 2.57
2637 3322 4.220382 TCAAATTTGGCCAAGTCGATTGAT 59.780 37.500 19.48 3.54 41.83 2.57
2638 3323 4.806640 AATTTGGCCAAGTCGATTGATT 57.193 36.364 19.48 10.00 41.83 2.57
2639 3324 3.848272 TTTGGCCAAGTCGATTGATTC 57.152 42.857 19.48 1.14 41.83 2.52
2640 3325 2.787473 TGGCCAAGTCGATTGATTCT 57.213 45.000 0.61 0.00 41.83 2.40
2641 3326 2.358957 TGGCCAAGTCGATTGATTCTG 58.641 47.619 0.61 0.00 41.83 3.02
2642 3327 2.290260 TGGCCAAGTCGATTGATTCTGT 60.290 45.455 0.61 0.00 41.83 3.41
2643 3328 2.352960 GGCCAAGTCGATTGATTCTGTC 59.647 50.000 0.00 0.00 41.83 3.51
2644 3329 2.352960 GCCAAGTCGATTGATTCTGTCC 59.647 50.000 8.56 0.00 41.83 4.02
2647 3332 3.594603 AGTCGATTGATTCTGTCCGTT 57.405 42.857 0.00 0.00 0.00 4.44
2648 3333 3.254060 AGTCGATTGATTCTGTCCGTTG 58.746 45.455 0.00 0.00 0.00 4.10
2649 3334 2.348666 GTCGATTGATTCTGTCCGTTGG 59.651 50.000 0.00 0.00 0.00 3.77
2650 3335 2.232696 TCGATTGATTCTGTCCGTTGGA 59.767 45.455 0.00 0.00 0.00 3.53
2652 3337 3.001634 CGATTGATTCTGTCCGTTGGATG 59.998 47.826 0.00 0.00 32.73 3.51
2653 3338 1.737838 TGATTCTGTCCGTTGGATGC 58.262 50.000 0.00 0.00 32.73 3.91
2655 3340 1.667724 GATTCTGTCCGTTGGATGCAG 59.332 52.381 0.00 0.00 32.73 4.41
2656 3341 0.684535 TTCTGTCCGTTGGATGCAGA 59.315 50.000 0.00 2.91 34.46 4.26
2657 3342 0.904649 TCTGTCCGTTGGATGCAGAT 59.095 50.000 0.00 0.00 32.34 2.90
2658 3343 1.134699 TCTGTCCGTTGGATGCAGATC 60.135 52.381 0.00 0.00 32.34 2.75
2659 3344 0.612744 TGTCCGTTGGATGCAGATCA 59.387 50.000 0.00 0.00 32.73 2.92
2660 3345 1.003003 TGTCCGTTGGATGCAGATCAA 59.997 47.619 0.00 0.00 32.73 2.57
2661 3346 2.083774 GTCCGTTGGATGCAGATCAAA 58.916 47.619 0.00 0.00 32.73 2.69
2662 3347 2.083774 TCCGTTGGATGCAGATCAAAC 58.916 47.619 0.00 0.00 38.66 2.93
2665 3350 2.485426 CGTTGGATGCAGATCAAACAGT 59.515 45.455 8.04 0.00 41.17 3.55
2666 3351 3.668757 CGTTGGATGCAGATCAAACAGTG 60.669 47.826 8.04 0.00 41.17 3.66
2667 3352 2.439409 TGGATGCAGATCAAACAGTGG 58.561 47.619 0.00 0.00 0.00 4.00
2669 3354 2.421424 GGATGCAGATCAAACAGTGGAC 59.579 50.000 0.00 0.00 0.00 4.02
2670 3355 2.636647 TGCAGATCAAACAGTGGACA 57.363 45.000 0.00 0.00 0.00 4.02
2671 3356 2.497138 TGCAGATCAAACAGTGGACAG 58.503 47.619 0.00 0.00 0.00 3.51
2673 3358 1.808945 CAGATCAAACAGTGGACAGCC 59.191 52.381 0.00 0.00 0.00 4.85
2674 3359 1.701847 AGATCAAACAGTGGACAGCCT 59.298 47.619 0.00 0.00 34.31 4.58
2675 3360 2.107204 AGATCAAACAGTGGACAGCCTT 59.893 45.455 0.00 0.00 34.31 4.35
2676 3361 1.967319 TCAAACAGTGGACAGCCTTC 58.033 50.000 0.00 0.00 34.31 3.46
2679 3364 2.262423 AACAGTGGACAGCCTTCTTC 57.738 50.000 0.00 0.00 34.31 2.87
2682 3367 2.224402 ACAGTGGACAGCCTTCTTCTTC 60.224 50.000 0.00 0.00 34.31 2.87
2683 3368 1.349357 AGTGGACAGCCTTCTTCTTCC 59.651 52.381 0.00 0.00 34.31 3.46
2684 3369 1.072331 GTGGACAGCCTTCTTCTTCCA 59.928 52.381 0.00 0.00 34.31 3.53
2685 3370 1.072331 TGGACAGCCTTCTTCTTCCAC 59.928 52.381 0.00 0.00 34.31 4.02
2686 3371 1.611936 GGACAGCCTTCTTCTTCCACC 60.612 57.143 0.00 0.00 0.00 4.61
2687 3372 1.072331 GACAGCCTTCTTCTTCCACCA 59.928 52.381 0.00 0.00 0.00 4.17
2688 3373 1.072965 ACAGCCTTCTTCTTCCACCAG 59.927 52.381 0.00 0.00 0.00 4.00
2690 3375 0.037447 GCCTTCTTCTTCCACCAGCT 59.963 55.000 0.00 0.00 0.00 4.24
2691 3376 1.546548 GCCTTCTTCTTCCACCAGCTT 60.547 52.381 0.00 0.00 0.00 3.74
2692 3377 2.431454 CCTTCTTCTTCCACCAGCTTC 58.569 52.381 0.00 0.00 0.00 3.86
2693 3378 2.039613 CCTTCTTCTTCCACCAGCTTCT 59.960 50.000 0.00 0.00 0.00 2.85
2694 3379 3.497584 CCTTCTTCTTCCACCAGCTTCTT 60.498 47.826 0.00 0.00 0.00 2.52
2698 3383 3.409026 TCTTCCACCAGCTTCTTCTTC 57.591 47.619 0.00 0.00 0.00 2.87
2701 3386 3.409026 TCCACCAGCTTCTTCTTCTTC 57.591 47.619 0.00 0.00 0.00 2.87
2703 3388 3.392616 TCCACCAGCTTCTTCTTCTTCTT 59.607 43.478 0.00 0.00 0.00 2.52
2704 3389 3.750652 CCACCAGCTTCTTCTTCTTCTTC 59.249 47.826 0.00 0.00 0.00 2.87
2705 3390 3.750652 CACCAGCTTCTTCTTCTTCTTCC 59.249 47.826 0.00 0.00 0.00 3.46
2706 3391 3.244735 ACCAGCTTCTTCTTCTTCTTCCC 60.245 47.826 0.00 0.00 0.00 3.97
2707 3392 3.244700 CCAGCTTCTTCTTCTTCTTCCCA 60.245 47.826 0.00 0.00 0.00 4.37
2709 3394 3.008923 AGCTTCTTCTTCTTCTTCCCAGG 59.991 47.826 0.00 0.00 0.00 4.45
2710 3395 3.342719 CTTCTTCTTCTTCTTCCCAGGC 58.657 50.000 0.00 0.00 0.00 4.85
2711 3396 2.625639 TCTTCTTCTTCTTCCCAGGCT 58.374 47.619 0.00 0.00 0.00 4.58
2712 3397 2.304180 TCTTCTTCTTCTTCCCAGGCTG 59.696 50.000 7.75 7.75 0.00 4.85
2713 3398 0.326264 TCTTCTTCTTCCCAGGCTGC 59.674 55.000 9.56 0.00 0.00 5.25
2714 3399 0.679321 CTTCTTCTTCCCAGGCTGCC 60.679 60.000 11.65 11.65 0.00 4.85
2715 3400 1.426251 TTCTTCTTCCCAGGCTGCCA 61.426 55.000 22.65 0.00 0.00 4.92
2716 3401 1.676967 CTTCTTCCCAGGCTGCCAC 60.677 63.158 22.65 0.00 0.00 5.01
2717 3402 2.416107 CTTCTTCCCAGGCTGCCACA 62.416 60.000 22.65 0.00 0.00 4.17
2718 3403 2.674380 CTTCCCAGGCTGCCACAC 60.674 66.667 22.65 0.00 0.00 3.82
2719 3404 3.496309 CTTCCCAGGCTGCCACACA 62.496 63.158 22.65 0.00 0.00 3.72
2763 3448 4.827087 ATCACTCGCAGCCGGCAG 62.827 66.667 31.54 23.68 45.17 4.85
2781 3466 2.951745 CGCTCACGCTTAGCCTCG 60.952 66.667 0.00 0.00 36.60 4.63
2782 3467 3.258290 GCTCACGCTTAGCCTCGC 61.258 66.667 0.00 0.00 33.73 5.03
2783 3468 2.583593 CTCACGCTTAGCCTCGCC 60.584 66.667 0.00 0.00 0.00 5.54
2784 3469 4.492160 TCACGCTTAGCCTCGCCG 62.492 66.667 0.00 0.00 0.00 6.46
2788 3473 3.839432 GCTTAGCCTCGCCGGTCT 61.839 66.667 1.90 0.00 34.25 3.85
2790 3475 1.519455 CTTAGCCTCGCCGGTCTTG 60.519 63.158 1.90 0.00 34.25 3.02
2791 3476 3.659089 TTAGCCTCGCCGGTCTTGC 62.659 63.158 1.90 1.16 34.25 4.01
2833 4344 1.873125 CGCGCGTGTCCGGTATTAA 60.873 57.895 24.19 0.00 33.68 1.40
2834 4345 1.632645 GCGCGTGTCCGGTATTAAC 59.367 57.895 8.43 0.00 33.68 2.01
2835 4346 1.755405 GCGCGTGTCCGGTATTAACC 61.755 60.000 8.43 0.00 42.95 2.85
2838 4349 1.408702 GCGTGTCCGGTATTAACCCTA 59.591 52.381 0.00 0.00 43.54 3.53
2839 4350 2.159114 GCGTGTCCGGTATTAACCCTAA 60.159 50.000 0.00 0.00 43.54 2.69
2841 4352 4.053295 CGTGTCCGGTATTAACCCTAATG 58.947 47.826 0.00 0.00 43.54 1.90
2842 4353 4.441913 CGTGTCCGGTATTAACCCTAATGT 60.442 45.833 0.00 0.00 43.54 2.71
2844 4355 6.218746 GTGTCCGGTATTAACCCTAATGTAG 58.781 44.000 0.00 0.00 43.54 2.74
2845 4356 6.040842 GTGTCCGGTATTAACCCTAATGTAGA 59.959 42.308 0.00 0.00 43.54 2.59
2846 4357 6.783977 TGTCCGGTATTAACCCTAATGTAGAT 59.216 38.462 0.00 0.00 43.54 1.98
2847 4358 7.095270 GTCCGGTATTAACCCTAATGTAGATG 58.905 42.308 0.00 0.00 43.54 2.90
2848 4359 7.011994 TCCGGTATTAACCCTAATGTAGATGA 58.988 38.462 0.00 0.00 43.54 2.92
2849 4360 7.676893 TCCGGTATTAACCCTAATGTAGATGAT 59.323 37.037 0.00 0.00 43.54 2.45
2850 4361 7.764443 CCGGTATTAACCCTAATGTAGATGATG 59.236 40.741 0.00 0.00 43.54 3.07
2853 4364 9.877178 GTATTAACCCTAATGTAGATGATGGAG 57.123 37.037 0.00 0.00 0.00 3.86
2857 4368 5.482175 ACCCTAATGTAGATGATGGAGTAGC 59.518 44.000 0.00 0.00 0.00 3.58
2858 4369 5.105146 CCCTAATGTAGATGATGGAGTAGCC 60.105 48.000 0.00 0.00 37.10 3.93
2862 4373 3.141083 TGTAGATGATGGAGTAGCCCTCT 59.859 47.826 1.46 0.00 40.30 3.69
2878 4389 1.528129 CTCTGGCGAGCCTTTTCTTT 58.472 50.000 15.75 0.00 36.94 2.52
2880 4391 1.072331 TCTGGCGAGCCTTTTCTTTCT 59.928 47.619 15.75 0.00 36.94 2.52
2881 4392 1.466558 CTGGCGAGCCTTTTCTTTCTC 59.533 52.381 15.75 0.00 36.94 2.87
2883 4394 1.611936 GGCGAGCCTTTTCTTTCTCCT 60.612 52.381 6.90 0.00 0.00 3.69
2884 4395 2.155279 GCGAGCCTTTTCTTTCTCCTT 58.845 47.619 0.00 0.00 0.00 3.36
2887 4398 3.558109 CGAGCCTTTTCTTTCTCCTTCCT 60.558 47.826 0.00 0.00 0.00 3.36
2889 4400 4.809193 AGCCTTTTCTTTCTCCTTCCTTT 58.191 39.130 0.00 0.00 0.00 3.11
2891 4402 4.021894 GCCTTTTCTTTCTCCTTCCTTTCC 60.022 45.833 0.00 0.00 0.00 3.13
2892 4403 5.389520 CCTTTTCTTTCTCCTTCCTTTCCT 58.610 41.667 0.00 0.00 0.00 3.36
2894 4405 4.642466 TTCTTTCTCCTTCCTTTCCTCC 57.358 45.455 0.00 0.00 0.00 4.30
2896 4407 1.276622 TTCTCCTTCCTTTCCTCCGG 58.723 55.000 0.00 0.00 0.00 5.14
2899 4410 2.656069 CCTTCCTTTCCTCCGGCGA 61.656 63.158 9.30 0.00 0.00 5.54
2900 4411 1.295423 CTTCCTTTCCTCCGGCGAA 59.705 57.895 9.30 0.00 0.00 4.70
2901 4412 1.004200 TTCCTTTCCTCCGGCGAAC 60.004 57.895 9.30 0.00 0.00 3.95
2904 4415 1.592223 CTTTCCTCCGGCGAACTCT 59.408 57.895 9.30 0.00 0.00 3.24
2906 4417 1.183030 TTTCCTCCGGCGAACTCTCA 61.183 55.000 9.30 0.00 0.00 3.27
2908 4419 1.183030 TCCTCCGGCGAACTCTCAAA 61.183 55.000 9.30 0.00 0.00 2.69
2909 4420 0.320421 CCTCCGGCGAACTCTCAAAA 60.320 55.000 9.30 0.00 0.00 2.44
2910 4421 1.676014 CCTCCGGCGAACTCTCAAAAT 60.676 52.381 9.30 0.00 0.00 1.82
2911 4422 1.661112 CTCCGGCGAACTCTCAAAATC 59.339 52.381 9.30 0.00 0.00 2.17
2912 4423 0.370273 CCGGCGAACTCTCAAAATCG 59.630 55.000 9.30 0.00 38.28 3.34
2913 4424 1.346365 CGGCGAACTCTCAAAATCGA 58.654 50.000 0.00 0.00 37.48 3.59
2915 4426 2.338500 GGCGAACTCTCAAAATCGACT 58.662 47.619 0.00 0.00 40.12 4.18
2917 4428 2.987149 GCGAACTCTCAAAATCGACTGA 59.013 45.455 0.00 0.00 37.48 3.41
2919 4430 3.365220 CGAACTCTCAAAATCGACTGACC 59.635 47.826 0.00 0.00 37.48 4.02
2920 4431 3.320673 ACTCTCAAAATCGACTGACCC 57.679 47.619 0.00 0.00 0.00 4.46
2921 4432 2.028020 ACTCTCAAAATCGACTGACCCC 60.028 50.000 0.00 0.00 0.00 4.95
2923 4434 2.370519 TCTCAAAATCGACTGACCCCAA 59.629 45.455 0.00 0.00 0.00 4.12
2924 4435 3.009033 TCTCAAAATCGACTGACCCCAAT 59.991 43.478 0.00 0.00 0.00 3.16
2926 4437 4.148838 TCAAAATCGACTGACCCCAATTT 58.851 39.130 0.00 0.00 0.00 1.82
2927 4438 5.317808 TCAAAATCGACTGACCCCAATTTA 58.682 37.500 0.00 0.00 0.00 1.40
2928 4439 5.770663 TCAAAATCGACTGACCCCAATTTAA 59.229 36.000 0.00 0.00 0.00 1.52
2929 4440 6.265649 TCAAAATCGACTGACCCCAATTTAAA 59.734 34.615 0.00 0.00 0.00 1.52
2930 4441 6.658188 AAATCGACTGACCCCAATTTAAAA 57.342 33.333 0.00 0.00 0.00 1.52
2931 4442 6.850752 AATCGACTGACCCCAATTTAAAAT 57.149 33.333 0.00 0.00 0.00 1.82
2932 4443 6.850752 ATCGACTGACCCCAATTTAAAATT 57.149 33.333 0.00 0.00 0.00 1.82
2934 4445 5.770663 TCGACTGACCCCAATTTAAAATTCA 59.229 36.000 0.00 0.00 0.00 2.57
2935 4446 6.435904 TCGACTGACCCCAATTTAAAATTCAT 59.564 34.615 0.00 0.00 0.00 2.57
2937 4448 7.275560 CGACTGACCCCAATTTAAAATTCATTC 59.724 37.037 0.00 0.00 0.00 2.67
2940 4451 7.093992 TGACCCCAATTTAAAATTCATTCGAC 58.906 34.615 0.00 0.00 0.00 4.20
2942 4453 5.518487 CCCCAATTTAAAATTCATTCGACCG 59.482 40.000 0.00 0.00 0.00 4.79
2943 4454 6.096695 CCCAATTTAAAATTCATTCGACCGT 58.903 36.000 0.00 0.00 0.00 4.83
2945 4456 6.804295 CCAATTTAAAATTCATTCGACCGTCA 59.196 34.615 0.00 0.00 0.00 4.35
2946 4457 7.487829 CCAATTTAAAATTCATTCGACCGTCAT 59.512 33.333 0.00 0.00 0.00 3.06
2947 4458 8.859156 CAATTTAAAATTCATTCGACCGTCATT 58.141 29.630 0.00 0.00 0.00 2.57
2948 4459 8.980143 ATTTAAAATTCATTCGACCGTCATTT 57.020 26.923 0.00 0.00 0.00 2.32
2950 4461 9.549509 TTTAAAATTCATTCGACCGTCATTTAG 57.450 29.630 0.00 0.00 0.00 1.85
2952 4463 3.520290 TCATTCGACCGTCATTTAGCT 57.480 42.857 0.00 0.00 0.00 3.32
2953 4464 4.642445 TCATTCGACCGTCATTTAGCTA 57.358 40.909 0.00 0.00 0.00 3.32
2954 4465 5.001237 TCATTCGACCGTCATTTAGCTAA 57.999 39.130 0.86 0.86 0.00 3.09
2955 4466 5.597806 TCATTCGACCGTCATTTAGCTAAT 58.402 37.500 7.08 0.00 0.00 1.73
2956 4467 5.462068 TCATTCGACCGTCATTTAGCTAATG 59.538 40.000 7.08 8.09 44.14 1.90
2957 4468 4.380841 TCGACCGTCATTTAGCTAATGT 57.619 40.909 7.08 0.00 43.41 2.71
2958 4469 4.109766 TCGACCGTCATTTAGCTAATGTG 58.890 43.478 7.08 9.69 43.41 3.21
2960 4471 4.439057 GACCGTCATTTAGCTAATGTGGA 58.561 43.478 21.47 11.61 43.41 4.02
2961 4472 5.036117 ACCGTCATTTAGCTAATGTGGAT 57.964 39.130 21.47 8.45 43.41 3.41
2964 4475 6.650807 ACCGTCATTTAGCTAATGTGGATATG 59.349 38.462 21.47 15.41 43.41 1.78
2966 4477 7.173218 CCGTCATTTAGCTAATGTGGATATGTT 59.827 37.037 7.08 0.00 43.41 2.71
2967 4478 9.203421 CGTCATTTAGCTAATGTGGATATGTTA 57.797 33.333 7.08 0.00 43.41 2.41
3014 4525 8.942669 GATGAAATCGTGTACAACAAATTACA 57.057 30.769 0.00 0.00 31.13 2.41
3016 4527 8.144155 TGAAATCGTGTACAACAAATTACAGA 57.856 30.769 0.00 0.00 0.00 3.41
3017 4528 8.613482 TGAAATCGTGTACAACAAATTACAGAA 58.387 29.630 0.00 0.00 0.00 3.02
3019 4530 8.948853 AATCGTGTACAACAAATTACAGAATG 57.051 30.769 0.00 0.00 46.00 2.67
3020 4531 6.893759 TCGTGTACAACAAATTACAGAATGG 58.106 36.000 0.00 0.00 43.62 3.16
3021 4532 6.483974 TCGTGTACAACAAATTACAGAATGGT 59.516 34.615 0.00 0.00 43.62 3.55
3023 4534 8.283992 CGTGTACAACAAATTACAGAATGGTAA 58.716 33.333 0.00 0.00 43.62 2.85
3024 4535 9.389570 GTGTACAACAAATTACAGAATGGTAAC 57.610 33.333 0.00 0.00 43.62 2.50
3040 4551 5.087391 TGGTAACATATCGGCAACTAACA 57.913 39.130 0.00 0.00 46.17 2.41
3041 4552 5.489249 TGGTAACATATCGGCAACTAACAA 58.511 37.500 0.00 0.00 46.17 2.83
3042 4553 5.352016 TGGTAACATATCGGCAACTAACAAC 59.648 40.000 0.00 0.00 46.17 3.32
3043 4554 5.583457 GGTAACATATCGGCAACTAACAACT 59.417 40.000 0.00 0.00 0.00 3.16
3044 4555 6.757947 GGTAACATATCGGCAACTAACAACTA 59.242 38.462 0.00 0.00 0.00 2.24
3045 4556 7.440255 GGTAACATATCGGCAACTAACAACTAT 59.560 37.037 0.00 0.00 0.00 2.12
3046 4557 9.467258 GTAACATATCGGCAACTAACAACTATA 57.533 33.333 0.00 0.00 0.00 1.31
3090 6310 1.667236 TAGGATCATGTGCTTTGCCG 58.333 50.000 0.00 0.00 0.00 5.69
3093 6313 1.027357 GATCATGTGCTTTGCCGGAT 58.973 50.000 5.05 0.00 0.00 4.18
3101 6330 2.095567 GTGCTTTGCCGGATATATGCTG 60.096 50.000 5.05 0.00 0.00 4.41
3106 6335 5.720202 CTTTGCCGGATATATGCTGTAGTA 58.280 41.667 5.05 0.00 0.00 1.82
3127 6356 2.959707 ACAGATTACCCCTCGATCTGAC 59.040 50.000 15.00 0.00 46.06 3.51
3133 6362 0.749649 CCCCTCGATCTGACCAGAAG 59.250 60.000 3.62 2.22 41.36 2.85
3134 6363 0.749649 CCCTCGATCTGACCAGAAGG 59.250 60.000 3.62 6.55 41.36 3.46
3147 6384 1.493871 CCAGAAGGGGCATCTCTGATT 59.506 52.381 9.69 0.00 0.00 2.57
3187 6424 2.177531 CACATGGCGCTTGTGCTC 59.822 61.111 23.91 1.24 38.18 4.26
3190 6427 1.063649 CATGGCGCTTGTGCTCATC 59.936 57.895 7.64 0.00 36.97 2.92
3233 6470 8.693542 AGTAATTGCTTATTTTCTTCATGTGC 57.306 30.769 0.00 0.00 0.00 4.57
3234 6471 8.526147 AGTAATTGCTTATTTTCTTCATGTGCT 58.474 29.630 0.00 0.00 0.00 4.40
3235 6472 9.143631 GTAATTGCTTATTTTCTTCATGTGCTT 57.856 29.630 0.00 0.00 0.00 3.91
3236 6473 8.611654 AATTGCTTATTTTCTTCATGTGCTTT 57.388 26.923 0.00 0.00 0.00 3.51
3237 6474 7.642071 TTGCTTATTTTCTTCATGTGCTTTC 57.358 32.000 0.00 0.00 0.00 2.62
3238 6475 6.985117 TGCTTATTTTCTTCATGTGCTTTCT 58.015 32.000 0.00 0.00 0.00 2.52
3239 6476 8.109705 TGCTTATTTTCTTCATGTGCTTTCTA 57.890 30.769 0.00 0.00 0.00 2.10
3240 6477 8.742777 TGCTTATTTTCTTCATGTGCTTTCTAT 58.257 29.630 0.00 0.00 0.00 1.98
3260 6497 4.767578 ATACACATGTGCTCCAGATCTT 57.232 40.909 25.68 4.67 0.00 2.40
3274 6511 0.109597 GATCTTTGCCGTTGTGCTGG 60.110 55.000 0.00 0.00 0.00 4.85
3275 6512 1.526575 ATCTTTGCCGTTGTGCTGGG 61.527 55.000 0.00 0.00 0.00 4.45
3276 6513 2.124109 TTTGCCGTTGTGCTGGGA 60.124 55.556 0.00 0.00 0.00 4.37
3277 6514 2.406452 CTTTGCCGTTGTGCTGGGAC 62.406 60.000 0.00 0.00 0.00 4.46
3278 6515 3.705934 TTGCCGTTGTGCTGGGACA 62.706 57.895 0.00 0.00 0.00 4.02
3279 6516 3.660111 GCCGTTGTGCTGGGACAC 61.660 66.667 0.00 0.00 41.10 3.67
3280 6517 3.345808 CCGTTGTGCTGGGACACG 61.346 66.667 0.00 3.03 43.74 4.49
3281 6518 4.012895 CGTTGTGCTGGGACACGC 62.013 66.667 0.00 0.00 43.74 5.34
3282 6519 2.591715 GTTGTGCTGGGACACGCT 60.592 61.111 0.00 0.00 43.74 5.07
3283 6520 2.280797 TTGTGCTGGGACACGCTC 60.281 61.111 0.00 0.00 43.74 5.03
3284 6521 3.100503 TTGTGCTGGGACACGCTCA 62.101 57.895 0.00 0.00 43.74 4.26
3285 6522 2.046892 GTGCTGGGACACGCTCAT 60.047 61.111 0.00 0.00 34.50 2.90
3286 6523 2.046988 TGCTGGGACACGCTCATG 60.047 61.111 0.00 0.00 34.50 3.07
3287 6524 3.503363 GCTGGGACACGCTCATGC 61.503 66.667 0.00 0.00 31.61 4.06
3288 6525 2.267006 CTGGGACACGCTCATGCT 59.733 61.111 0.00 0.00 36.97 3.79
3289 6526 1.517361 CTGGGACACGCTCATGCTA 59.483 57.895 0.00 0.00 36.97 3.49
3342 6579 1.796796 GTGCTCCACGAAGAATGGC 59.203 57.895 0.00 0.00 37.13 4.40
3343 6580 0.674895 GTGCTCCACGAAGAATGGCT 60.675 55.000 0.00 0.00 37.13 4.75
3344 6581 0.391661 TGCTCCACGAAGAATGGCTC 60.392 55.000 0.00 0.00 37.13 4.70
3345 6582 0.391661 GCTCCACGAAGAATGGCTCA 60.392 55.000 0.00 0.00 37.13 4.26
3346 6583 1.363744 CTCCACGAAGAATGGCTCAC 58.636 55.000 0.00 0.00 37.13 3.51
3347 6584 0.684535 TCCACGAAGAATGGCTCACA 59.315 50.000 0.00 0.00 37.13 3.58
3348 6585 1.278985 TCCACGAAGAATGGCTCACAT 59.721 47.619 0.00 0.00 43.07 3.21
3349 6586 1.399440 CCACGAAGAATGGCTCACATG 59.601 52.381 0.00 0.00 40.44 3.21
3350 6587 1.399440 CACGAAGAATGGCTCACATGG 59.601 52.381 0.00 0.00 40.44 3.66
3351 6588 0.379669 CGAAGAATGGCTCACATGGC 59.620 55.000 0.00 0.00 40.44 4.40
3357 6594 3.415087 GGCTCACATGGCCTCCCT 61.415 66.667 3.32 0.00 45.57 4.20
3358 6595 2.191641 GCTCACATGGCCTCCCTC 59.808 66.667 3.32 0.00 0.00 4.30
3359 6596 2.673200 GCTCACATGGCCTCCCTCA 61.673 63.158 3.32 0.00 0.00 3.86
3360 6597 1.993653 CTCACATGGCCTCCCTCAA 59.006 57.895 3.32 0.00 0.00 3.02
3361 6598 0.549950 CTCACATGGCCTCCCTCAAT 59.450 55.000 3.32 0.00 0.00 2.57
3362 6599 1.770658 CTCACATGGCCTCCCTCAATA 59.229 52.381 3.32 0.00 0.00 1.90
3363 6600 2.374504 CTCACATGGCCTCCCTCAATAT 59.625 50.000 3.32 0.00 0.00 1.28
3364 6601 3.584406 CTCACATGGCCTCCCTCAATATA 59.416 47.826 3.32 0.00 0.00 0.86
3365 6602 4.178339 TCACATGGCCTCCCTCAATATAT 58.822 43.478 3.32 0.00 0.00 0.86
3366 6603 5.349690 TCACATGGCCTCCCTCAATATATA 58.650 41.667 3.32 0.00 0.00 0.86
3367 6604 5.189736 TCACATGGCCTCCCTCAATATATAC 59.810 44.000 3.32 0.00 0.00 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.825281 GCTGCCTCTGTCCTGACTGT 61.825 60.000 0.00 0.00 0.00 3.55
15 16 2.360767 CCTCTCTGCTGCTGCCTCT 61.361 63.158 13.47 0.00 38.71 3.69
18 19 0.394080 AAATCCTCTCTGCTGCTGCC 60.394 55.000 13.47 0.00 38.71 4.85
19 20 1.401199 GAAAATCCTCTCTGCTGCTGC 59.599 52.381 8.89 8.89 40.20 5.25
20 21 2.678836 CTGAAAATCCTCTCTGCTGCTG 59.321 50.000 0.00 0.00 0.00 4.41
28 29 2.746362 CACTGTGCCTGAAAATCCTCTC 59.254 50.000 0.00 0.00 0.00 3.20
81 82 2.610374 TCAGACTAAAACGTGGCACAAC 59.390 45.455 19.09 0.00 44.16 3.32
120 121 3.568007 AGTCGTTTTGCAGCCTGATTTTA 59.432 39.130 0.00 0.00 0.00 1.52
121 122 2.362077 AGTCGTTTTGCAGCCTGATTTT 59.638 40.909 0.00 0.00 0.00 1.82
140 141 4.393062 CAGAGCACATACCAAATTCGAAGT 59.607 41.667 3.35 0.00 0.00 3.01
161 162 4.398319 AGGAGAACCAACAAATACCACAG 58.602 43.478 0.00 0.00 38.94 3.66
249 250 6.808212 CAGATTTTTCAACATATCCTTTGCGT 59.192 34.615 0.00 0.00 0.00 5.24
251 252 8.761575 TTCAGATTTTTCAACATATCCTTTGC 57.238 30.769 0.00 0.00 0.00 3.68
279 280 9.185192 CTAGTGACACCTTGATTTTTCAAATTC 57.815 33.333 0.84 0.00 0.00 2.17
284 285 6.591935 AGACTAGTGACACCTTGATTTTTCA 58.408 36.000 0.00 0.00 0.00 2.69
285 286 7.226720 TCAAGACTAGTGACACCTTGATTTTTC 59.773 37.037 16.09 0.00 38.49 2.29
321 322 5.897250 TCAAGTCCTGCAGATACCATACTAA 59.103 40.000 17.39 0.00 0.00 2.24
338 339 7.603651 TCTTCAACTACAACTATCTCAAGTCC 58.396 38.462 0.00 0.00 0.00 3.85
351 352 6.293190 CCGTTACATTTGCTCTTCAACTACAA 60.293 38.462 0.00 0.00 33.73 2.41
359 360 5.358298 ACTTTCCGTTACATTTGCTCTTC 57.642 39.130 0.00 0.00 0.00 2.87
365 366 7.590279 AGTTCCATTACTTTCCGTTACATTTG 58.410 34.615 0.00 0.00 0.00 2.32
366 367 7.754851 AGTTCCATTACTTTCCGTTACATTT 57.245 32.000 0.00 0.00 0.00 2.32
367 368 7.551617 CCTAGTTCCATTACTTTCCGTTACATT 59.448 37.037 0.00 0.00 0.00 2.71
376 377 7.166167 TCTTGTTCCCTAGTTCCATTACTTTC 58.834 38.462 0.00 0.00 0.00 2.62
394 395 6.569179 TTATTTACTTGTGGCCTCTTGTTC 57.431 37.500 3.32 0.00 0.00 3.18
408 409 5.747342 TGCGGGGTCAGTTATTATTTACTT 58.253 37.500 0.00 0.00 0.00 2.24
409 410 5.362105 TGCGGGGTCAGTTATTATTTACT 57.638 39.130 0.00 0.00 0.00 2.24
410 411 6.439675 TTTGCGGGGTCAGTTATTATTTAC 57.560 37.500 0.00 0.00 0.00 2.01
411 412 7.463961 TTTTTGCGGGGTCAGTTATTATTTA 57.536 32.000 0.00 0.00 0.00 1.40
412 413 5.986501 TTTTGCGGGGTCAGTTATTATTT 57.013 34.783 0.00 0.00 0.00 1.40
413 414 5.986501 TTTTTGCGGGGTCAGTTATTATT 57.013 34.783 0.00 0.00 0.00 1.40
435 436 9.923143 GCCCACTTTCAGTTATTATTTACTTTT 57.077 29.630 0.00 0.00 0.00 2.27
436 437 8.241367 CGCCCACTTTCAGTTATTATTTACTTT 58.759 33.333 0.00 0.00 0.00 2.66
444 445 3.244630 ACACCGCCCACTTTCAGTTATTA 60.245 43.478 0.00 0.00 0.00 0.98
460 461 1.804748 CTCCACTAAAGGAAACACCGC 59.195 52.381 0.00 0.00 44.74 5.68
473 474 1.007963 CCTACCCCTTCCACTCCACTA 59.992 57.143 0.00 0.00 0.00 2.74
481 482 0.476808 TGGAAAGCCTACCCCTTCCA 60.477 55.000 0.00 0.00 34.31 3.53
484 486 1.683441 CGTGGAAAGCCTACCCCTT 59.317 57.895 0.00 0.00 34.31 3.95
501 503 3.131933 ACAGATGAAGATGAACCTCTCCG 59.868 47.826 0.00 0.00 0.00 4.63
520 529 3.657634 AGAAGTACATGCAGACACACAG 58.342 45.455 0.00 0.00 0.00 3.66
530 539 2.541762 GCCGATGAAGAGAAGTACATGC 59.458 50.000 0.00 0.00 0.00 4.06
562 597 0.872388 CGGGACCAGCACACTTAAAC 59.128 55.000 0.00 0.00 0.00 2.01
566 601 4.988598 CGCGGGACCAGCACACTT 62.989 66.667 17.13 0.00 34.19 3.16
583 618 2.758736 AGTTGTCATGCTGAGACCTC 57.241 50.000 0.00 0.00 35.15 3.85
587 622 2.634453 TCAGGAAGTTGTCATGCTGAGA 59.366 45.455 0.00 0.00 38.82 3.27
595 630 4.832823 TGATAGACAGTCAGGAAGTTGTCA 59.167 41.667 2.66 0.00 41.74 3.58
601 636 9.906660 GACTTATTATGATAGACAGTCAGGAAG 57.093 37.037 2.66 0.00 29.48 3.46
606 641 9.015367 GGCTAGACTTATTATGATAGACAGTCA 57.985 37.037 2.66 0.00 30.59 3.41
609 644 8.354711 TGGGCTAGACTTATTATGATAGACAG 57.645 38.462 0.00 0.00 0.00 3.51
616 651 8.005388 ACTAGAGTTGGGCTAGACTTATTATGA 58.995 37.037 0.00 0.00 38.89 2.15
619 654 7.284944 GTCACTAGAGTTGGGCTAGACTTATTA 59.715 40.741 0.00 0.00 38.89 0.98
627 662 5.279206 CCATATGTCACTAGAGTTGGGCTAG 60.279 48.000 0.00 0.00 40.84 3.42
633 668 5.500645 TCGTCCATATGTCACTAGAGTTG 57.499 43.478 0.00 0.00 0.00 3.16
641 676 2.394708 CCGTCATCGTCCATATGTCAC 58.605 52.381 1.24 0.00 35.01 3.67
645 680 1.008875 CCGCCGTCATCGTCCATATG 61.009 60.000 0.00 0.00 35.01 1.78
646 681 1.289066 CCGCCGTCATCGTCCATAT 59.711 57.895 0.00 0.00 35.01 1.78
647 682 2.725641 CCGCCGTCATCGTCCATA 59.274 61.111 0.00 0.00 35.01 2.74
652 687 3.195002 CATTGCCGCCGTCATCGT 61.195 61.111 0.00 0.00 35.01 3.73
653 688 4.596180 GCATTGCCGCCGTCATCG 62.596 66.667 0.00 0.00 0.00 3.84
666 701 4.122776 CACTGAAGCGAACTATAGGCATT 58.877 43.478 4.43 0.00 0.00 3.56
683 718 3.110358 CAACGACGACTACAAACACTGA 58.890 45.455 0.00 0.00 0.00 3.41
689 724 2.036217 ACCATCCAACGACGACTACAAA 59.964 45.455 0.00 0.00 0.00 2.83
793 833 1.985895 GCCTATATACCCAACCCTGCT 59.014 52.381 0.00 0.00 0.00 4.24
794 834 1.338769 CGCCTATATACCCAACCCTGC 60.339 57.143 0.00 0.00 0.00 4.85
795 835 1.278127 CCGCCTATATACCCAACCCTG 59.722 57.143 0.00 0.00 0.00 4.45
796 836 1.652947 CCGCCTATATACCCAACCCT 58.347 55.000 0.00 0.00 0.00 4.34
799 839 1.553704 CCTCCCGCCTATATACCCAAC 59.446 57.143 0.00 0.00 0.00 3.77
801 841 0.788383 ACCTCCCGCCTATATACCCA 59.212 55.000 0.00 0.00 0.00 4.51
836 876 8.874156 TGCTTCAATATAACCATCTCTATCACT 58.126 33.333 0.00 0.00 0.00 3.41
837 877 8.930760 GTGCTTCAATATAACCATCTCTATCAC 58.069 37.037 0.00 0.00 0.00 3.06
838 878 8.650490 TGTGCTTCAATATAACCATCTCTATCA 58.350 33.333 0.00 0.00 0.00 2.15
839 879 8.930760 GTGTGCTTCAATATAACCATCTCTATC 58.069 37.037 0.00 0.00 0.00 2.08
840 880 7.600375 CGTGTGCTTCAATATAACCATCTCTAT 59.400 37.037 0.00 0.00 0.00 1.98
841 881 6.923508 CGTGTGCTTCAATATAACCATCTCTA 59.076 38.462 0.00 0.00 0.00 2.43
899 971 5.307196 GTGAGGGGTATATATTGTGTGGAGT 59.693 44.000 0.00 0.00 0.00 3.85
900 972 5.544176 AGTGAGGGGTATATATTGTGTGGAG 59.456 44.000 0.00 0.00 0.00 3.86
901 973 5.473273 AGTGAGGGGTATATATTGTGTGGA 58.527 41.667 0.00 0.00 0.00 4.02
902 974 5.280011 GGAGTGAGGGGTATATATTGTGTGG 60.280 48.000 0.00 0.00 0.00 4.17
903 975 5.306937 TGGAGTGAGGGGTATATATTGTGTG 59.693 44.000 0.00 0.00 0.00 3.82
904 976 5.473273 TGGAGTGAGGGGTATATATTGTGT 58.527 41.667 0.00 0.00 0.00 3.72
955 1027 4.376146 GCCTCTATGGAGAATGTGAGTTC 58.624 47.826 7.81 0.00 41.86 3.01
974 1046 2.671070 CCGGATGAACAGTGGCCT 59.329 61.111 3.32 0.00 0.00 5.19
978 1054 0.460109 TGATCGCCGGATGAACAGTG 60.460 55.000 5.05 0.00 31.51 3.66
983 1059 1.675483 CCATTTTGATCGCCGGATGAA 59.325 47.619 5.05 0.00 31.51 2.57
986 1062 1.949525 CTTCCATTTTGATCGCCGGAT 59.050 47.619 5.05 0.00 34.96 4.18
1270 1386 1.587613 GCGAGATCGTCAGGCTGTC 60.588 63.158 15.27 8.16 42.22 3.51
1271 1387 1.999071 GAGCGAGATCGTCAGGCTGT 61.999 60.000 15.27 0.00 42.22 4.40
1272 1388 1.299014 GAGCGAGATCGTCAGGCTG 60.299 63.158 8.58 8.58 42.22 4.85
1462 1585 3.749064 GAGCTCGGTGACCTGCGA 61.749 66.667 0.00 0.00 0.00 5.10
1660 1824 1.075482 CCATGTCCTGCACCTTGGT 59.925 57.895 0.00 0.00 0.00 3.67
1682 1846 2.884207 GCGGGTACTCGAAAGGCG 60.884 66.667 21.77 0.00 42.69 5.52
1933 2122 4.312052 GGCGTTGCCCATGTAAGA 57.688 55.556 0.00 0.00 44.06 2.10
2308 2530 3.200593 GGCGAGCACATCAGCAGG 61.201 66.667 0.00 0.00 36.85 4.85
2311 2533 3.200593 CCTGGCGAGCACATCAGC 61.201 66.667 0.00 0.00 0.00 4.26
2372 2597 0.388294 CGCCATCATCTCTCAGCTGA 59.612 55.000 17.19 17.19 0.00 4.26
2373 2598 1.222766 GCGCCATCATCTCTCAGCTG 61.223 60.000 7.63 7.63 0.00 4.24
2374 2599 1.069427 GCGCCATCATCTCTCAGCT 59.931 57.895 0.00 0.00 0.00 4.24
2375 2600 1.960250 GGCGCCATCATCTCTCAGC 60.960 63.158 24.80 0.00 0.00 4.26
2376 2601 1.664017 CGGCGCCATCATCTCTCAG 60.664 63.158 28.98 0.37 0.00 3.35
2377 2602 2.418777 CGGCGCCATCATCTCTCA 59.581 61.111 28.98 0.00 0.00 3.27
2401 2627 3.948719 TCGGCGAGGGCAAAACCT 61.949 61.111 4.99 0.00 45.57 3.50
2402 2628 3.733960 GTCGGCGAGGGCAAAACC 61.734 66.667 11.20 0.00 42.47 3.27
2403 2629 4.084888 CGTCGGCGAGGGCAAAAC 62.085 66.667 20.92 1.24 42.47 2.43
2424 2677 4.335647 CACCGGAACCAGCAGGCT 62.336 66.667 9.46 0.00 39.06 4.58
2426 2679 3.850098 AAGCACCGGAACCAGCAGG 62.850 63.158 9.46 0.00 42.21 4.85
2430 2683 2.711542 AGATAAAAGCACCGGAACCAG 58.288 47.619 9.46 0.00 0.00 4.00
2431 2684 2.817258 CAAGATAAAAGCACCGGAACCA 59.183 45.455 9.46 0.00 0.00 3.67
2432 2685 2.817844 ACAAGATAAAAGCACCGGAACC 59.182 45.455 9.46 0.00 0.00 3.62
2433 2686 4.499037 AACAAGATAAAAGCACCGGAAC 57.501 40.909 9.46 0.00 0.00 3.62
2434 2687 6.636562 TTAAACAAGATAAAAGCACCGGAA 57.363 33.333 9.46 0.00 0.00 4.30
2435 2688 6.636562 TTTAAACAAGATAAAAGCACCGGA 57.363 33.333 9.46 0.00 0.00 5.14
2436 2689 7.621219 GCATTTTAAACAAGATAAAAGCACCGG 60.621 37.037 0.00 0.00 36.13 5.28
2437 2690 7.226772 GCATTTTAAACAAGATAAAAGCACCG 58.773 34.615 0.00 0.00 36.13 4.94
2439 2692 7.095816 ACGGCATTTTAAACAAGATAAAAGCAC 60.096 33.333 0.00 0.00 36.13 4.40
2441 2694 7.346208 ACGGCATTTTAAACAAGATAAAAGC 57.654 32.000 0.00 0.00 36.13 3.51
2447 2700 7.754924 CACAAGATACGGCATTTTAAACAAGAT 59.245 33.333 0.00 0.00 0.00 2.40
2448 2701 7.081349 CACAAGATACGGCATTTTAAACAAGA 58.919 34.615 0.00 0.00 0.00 3.02
2449 2702 6.861055 ACACAAGATACGGCATTTTAAACAAG 59.139 34.615 0.00 0.00 0.00 3.16
2451 2704 6.146216 CACACAAGATACGGCATTTTAAACA 58.854 36.000 0.00 0.00 0.00 2.83
2452 2705 5.060446 GCACACAAGATACGGCATTTTAAAC 59.940 40.000 0.00 0.00 0.00 2.01
2456 2709 2.819608 AGCACACAAGATACGGCATTTT 59.180 40.909 0.00 0.00 0.00 1.82
2457 2710 2.162208 CAGCACACAAGATACGGCATTT 59.838 45.455 0.00 0.00 0.00 2.32
2459 2712 1.339055 ACAGCACACAAGATACGGCAT 60.339 47.619 0.00 0.00 0.00 4.40
2460 2713 0.034756 ACAGCACACAAGATACGGCA 59.965 50.000 0.00 0.00 0.00 5.69
2461 2714 1.927174 CTACAGCACACAAGATACGGC 59.073 52.381 0.00 0.00 0.00 5.68
2462 2715 3.232213 ACTACAGCACACAAGATACGG 57.768 47.619 0.00 0.00 0.00 4.02
2463 2716 6.365247 AGTTTTACTACAGCACACAAGATACG 59.635 38.462 0.00 0.00 0.00 3.06
2464 2717 7.653767 AGTTTTACTACAGCACACAAGATAC 57.346 36.000 0.00 0.00 0.00 2.24
2465 2718 8.582437 ACTAGTTTTACTACAGCACACAAGATA 58.418 33.333 0.00 0.00 0.00 1.98
2466 2719 7.385205 CACTAGTTTTACTACAGCACACAAGAT 59.615 37.037 0.00 0.00 0.00 2.40
2467 2720 6.700081 CACTAGTTTTACTACAGCACACAAGA 59.300 38.462 0.00 0.00 0.00 3.02
2468 2721 6.700081 TCACTAGTTTTACTACAGCACACAAG 59.300 38.462 0.00 0.00 0.00 3.16
2469 2722 6.575267 TCACTAGTTTTACTACAGCACACAA 58.425 36.000 0.00 0.00 0.00 3.33
2474 2727 8.978472 AGGATTATCACTAGTTTTACTACAGCA 58.022 33.333 0.00 0.00 0.00 4.41
2475 2728 9.250624 CAGGATTATCACTAGTTTTACTACAGC 57.749 37.037 0.00 0.00 0.00 4.40
2479 2732 9.982651 GCATCAGGATTATCACTAGTTTTACTA 57.017 33.333 0.00 0.00 0.00 1.82
2480 2733 7.934120 GGCATCAGGATTATCACTAGTTTTACT 59.066 37.037 0.00 0.00 0.00 2.24
2481 2734 7.173390 GGGCATCAGGATTATCACTAGTTTTAC 59.827 40.741 0.00 0.00 0.00 2.01
2482 2735 7.147391 TGGGCATCAGGATTATCACTAGTTTTA 60.147 37.037 0.00 0.00 0.00 1.52
2483 2736 6.064717 GGGCATCAGGATTATCACTAGTTTT 58.935 40.000 0.00 0.00 0.00 2.43
2484 2737 5.132648 TGGGCATCAGGATTATCACTAGTTT 59.867 40.000 0.00 0.00 0.00 2.66
2485 2738 4.660303 TGGGCATCAGGATTATCACTAGTT 59.340 41.667 0.00 0.00 0.00 2.24
2486 2739 4.234550 TGGGCATCAGGATTATCACTAGT 58.765 43.478 0.00 0.00 0.00 2.57
2487 2740 4.829968 CTGGGCATCAGGATTATCACTAG 58.170 47.826 0.00 0.00 39.76 2.57
2492 2745 1.271054 ACGCTGGGCATCAGGATTATC 60.271 52.381 8.13 0.00 43.54 1.75
2498 2751 2.046023 TTGACGCTGGGCATCAGG 60.046 61.111 8.13 2.18 43.54 3.86
2511 2764 9.724839 TTACTTTATTACAGCAACAAACTTGAC 57.275 29.630 0.00 0.00 0.00 3.18
2538 2854 8.375506 AGAGGCATTCGTATCCAGATAATTTTA 58.624 33.333 0.00 0.00 0.00 1.52
2539 2855 7.173907 CAGAGGCATTCGTATCCAGATAATTTT 59.826 37.037 0.00 0.00 0.00 1.82
2542 2875 5.728471 CAGAGGCATTCGTATCCAGATAAT 58.272 41.667 0.00 0.00 0.00 1.28
2545 2878 2.289320 GCAGAGGCATTCGTATCCAGAT 60.289 50.000 0.00 0.00 40.72 2.90
2547 2880 1.506493 GCAGAGGCATTCGTATCCAG 58.494 55.000 0.00 0.00 40.72 3.86
2550 2883 1.069204 TCTGGCAGAGGCATTCGTATC 59.931 52.381 14.43 0.00 43.71 2.24
2553 2886 1.220206 CTCTGGCAGAGGCATTCGT 59.780 57.895 32.31 0.00 43.71 3.85
2554 2887 2.178890 GCTCTGGCAGAGGCATTCG 61.179 63.158 37.73 18.02 42.54 3.34
2567 2900 1.280133 TCCATCCCAAAGTGAGCTCTG 59.720 52.381 16.19 4.39 0.00 3.35
2569 2902 2.496899 TTCCATCCCAAAGTGAGCTC 57.503 50.000 6.82 6.82 0.00 4.09
2570 2903 2.622452 CCATTCCATCCCAAAGTGAGCT 60.622 50.000 0.00 0.00 0.00 4.09
2571 2904 1.753073 CCATTCCATCCCAAAGTGAGC 59.247 52.381 0.00 0.00 0.00 4.26
2572 2905 1.753073 GCCATTCCATCCCAAAGTGAG 59.247 52.381 0.00 0.00 0.00 3.51
2574 2907 1.856629 AGCCATTCCATCCCAAAGTG 58.143 50.000 0.00 0.00 0.00 3.16
2575 2908 2.311542 TGTAGCCATTCCATCCCAAAGT 59.688 45.455 0.00 0.00 0.00 2.66
2576 2909 2.689983 GTGTAGCCATTCCATCCCAAAG 59.310 50.000 0.00 0.00 0.00 2.77
2577 2910 2.733956 GTGTAGCCATTCCATCCCAAA 58.266 47.619 0.00 0.00 0.00 3.28
2579 2912 0.180171 CGTGTAGCCATTCCATCCCA 59.820 55.000 0.00 0.00 0.00 4.37
2581 2914 1.134521 TGACGTGTAGCCATTCCATCC 60.135 52.381 0.00 0.00 0.00 3.51
2582 2915 2.205074 CTGACGTGTAGCCATTCCATC 58.795 52.381 0.00 0.00 0.00 3.51
2583 2916 1.555075 ACTGACGTGTAGCCATTCCAT 59.445 47.619 0.00 0.00 0.00 3.41
2586 2919 1.269166 CGACTGACGTGTAGCCATTC 58.731 55.000 0.00 0.00 37.22 2.67
2587 2920 3.418675 CGACTGACGTGTAGCCATT 57.581 52.632 0.00 0.00 37.22 3.16
2598 2931 6.129457 CCAAATTTGAAAATCGAACGACTGAC 60.129 38.462 19.86 0.00 0.00 3.51
2599 2932 5.912396 CCAAATTTGAAAATCGAACGACTGA 59.088 36.000 19.86 0.00 0.00 3.41
2600 2933 5.387342 GCCAAATTTGAAAATCGAACGACTG 60.387 40.000 19.86 0.00 0.00 3.51
2601 2934 4.679654 GCCAAATTTGAAAATCGAACGACT 59.320 37.500 19.86 0.00 0.00 4.18
2602 2935 4.143410 GGCCAAATTTGAAAATCGAACGAC 60.143 41.667 19.86 0.00 0.00 4.34
2603 2936 3.984633 GGCCAAATTTGAAAATCGAACGA 59.015 39.130 19.86 0.00 0.00 3.85
2604 2937 3.738282 TGGCCAAATTTGAAAATCGAACG 59.262 39.130 19.86 0.00 0.00 3.95
2605 2938 5.236263 ACTTGGCCAAATTTGAAAATCGAAC 59.764 36.000 20.91 0.06 0.00 3.95
2606 2939 5.363939 ACTTGGCCAAATTTGAAAATCGAA 58.636 33.333 20.91 5.90 0.00 3.71
2607 2940 4.954875 ACTTGGCCAAATTTGAAAATCGA 58.045 34.783 20.91 0.00 0.00 3.59
2608 2941 4.143347 CGACTTGGCCAAATTTGAAAATCG 60.143 41.667 20.91 15.93 0.00 3.34
2609 2942 4.987912 TCGACTTGGCCAAATTTGAAAATC 59.012 37.500 20.91 9.10 0.00 2.17
2615 3300 3.911868 TCAATCGACTTGGCCAAATTTG 58.088 40.909 20.91 16.89 35.43 2.32
2623 3308 2.352960 GGACAGAATCAATCGACTTGGC 59.647 50.000 0.00 0.00 35.43 4.52
2624 3309 2.604914 CGGACAGAATCAATCGACTTGG 59.395 50.000 0.00 0.00 35.43 3.61
2625 3310 3.254060 ACGGACAGAATCAATCGACTTG 58.746 45.455 0.00 0.00 36.09 3.16
2627 3312 3.254060 CAACGGACAGAATCAATCGACT 58.746 45.455 0.00 0.00 0.00 4.18
2628 3313 2.348666 CCAACGGACAGAATCAATCGAC 59.651 50.000 0.00 0.00 0.00 4.20
2629 3314 2.232696 TCCAACGGACAGAATCAATCGA 59.767 45.455 0.00 0.00 0.00 3.59
2630 3315 2.616960 TCCAACGGACAGAATCAATCG 58.383 47.619 0.00 0.00 0.00 3.34
2631 3316 3.242870 GCATCCAACGGACAGAATCAATC 60.243 47.826 0.00 0.00 32.98 2.67
2632 3317 2.684881 GCATCCAACGGACAGAATCAAT 59.315 45.455 0.00 0.00 32.98 2.57
2635 3320 1.667724 CTGCATCCAACGGACAGAATC 59.332 52.381 0.00 0.00 32.98 2.52
2636 3321 1.278985 TCTGCATCCAACGGACAGAAT 59.721 47.619 1.87 0.00 33.71 2.40
2637 3322 0.684535 TCTGCATCCAACGGACAGAA 59.315 50.000 1.87 0.00 33.71 3.02
2638 3323 0.904649 ATCTGCATCCAACGGACAGA 59.095 50.000 5.97 5.97 38.56 3.41
2639 3324 1.293924 GATCTGCATCCAACGGACAG 58.706 55.000 0.00 0.00 32.98 3.51
2640 3325 0.612744 TGATCTGCATCCAACGGACA 59.387 50.000 0.00 0.00 32.98 4.02
2641 3326 1.737838 TTGATCTGCATCCAACGGAC 58.262 50.000 0.00 0.00 32.98 4.79
2642 3327 2.083774 GTTTGATCTGCATCCAACGGA 58.916 47.619 0.00 0.00 35.55 4.69
2643 3328 1.811965 TGTTTGATCTGCATCCAACGG 59.188 47.619 0.00 0.00 37.44 4.44
2644 3329 2.485426 ACTGTTTGATCTGCATCCAACG 59.515 45.455 0.00 0.00 37.44 4.10
2647 3332 2.040145 TCCACTGTTTGATCTGCATCCA 59.960 45.455 0.00 0.00 0.00 3.41
2648 3333 2.421424 GTCCACTGTTTGATCTGCATCC 59.579 50.000 0.00 0.00 0.00 3.51
2649 3334 3.076621 TGTCCACTGTTTGATCTGCATC 58.923 45.455 0.00 0.00 0.00 3.91
2650 3335 3.079578 CTGTCCACTGTTTGATCTGCAT 58.920 45.455 0.00 0.00 0.00 3.96
2652 3337 1.198637 GCTGTCCACTGTTTGATCTGC 59.801 52.381 0.00 0.00 0.00 4.26
2653 3338 1.808945 GGCTGTCCACTGTTTGATCTG 59.191 52.381 0.00 0.00 0.00 2.90
2655 3340 2.191128 AGGCTGTCCACTGTTTGATC 57.809 50.000 0.00 0.00 33.74 2.92
2656 3341 2.107204 AGAAGGCTGTCCACTGTTTGAT 59.893 45.455 0.00 0.00 33.74 2.57
2657 3342 1.490490 AGAAGGCTGTCCACTGTTTGA 59.510 47.619 0.00 0.00 33.74 2.69
2658 3343 1.972872 AGAAGGCTGTCCACTGTTTG 58.027 50.000 0.00 0.00 33.74 2.93
2659 3344 2.173569 AGAAGAAGGCTGTCCACTGTTT 59.826 45.455 0.00 0.00 33.74 2.83
2660 3345 1.771255 AGAAGAAGGCTGTCCACTGTT 59.229 47.619 0.00 0.00 33.74 3.16
2661 3346 1.428869 AGAAGAAGGCTGTCCACTGT 58.571 50.000 0.00 0.00 33.74 3.55
2662 3347 2.421619 GAAGAAGAAGGCTGTCCACTG 58.578 52.381 0.00 0.00 33.74 3.66
2665 3350 1.072331 GTGGAAGAAGAAGGCTGTCCA 59.928 52.381 0.00 0.00 33.74 4.02
2666 3351 1.611936 GGTGGAAGAAGAAGGCTGTCC 60.612 57.143 0.00 0.00 0.00 4.02
2667 3352 1.072331 TGGTGGAAGAAGAAGGCTGTC 59.928 52.381 0.00 0.00 0.00 3.51
2669 3354 1.818642 CTGGTGGAAGAAGAAGGCTG 58.181 55.000 0.00 0.00 0.00 4.85
2670 3355 0.037447 GCTGGTGGAAGAAGAAGGCT 59.963 55.000 0.00 0.00 0.00 4.58
2671 3356 0.037447 AGCTGGTGGAAGAAGAAGGC 59.963 55.000 0.00 0.00 0.00 4.35
2673 3358 3.415457 AGAAGCTGGTGGAAGAAGAAG 57.585 47.619 0.00 0.00 0.00 2.85
2674 3359 3.392616 AGAAGAAGCTGGTGGAAGAAGAA 59.607 43.478 0.00 0.00 0.00 2.52
2675 3360 2.975489 AGAAGAAGCTGGTGGAAGAAGA 59.025 45.455 0.00 0.00 0.00 2.87
2676 3361 3.415457 AGAAGAAGCTGGTGGAAGAAG 57.585 47.619 0.00 0.00 0.00 2.85
2679 3364 3.415457 AGAAGAAGAAGCTGGTGGAAG 57.585 47.619 0.00 0.00 0.00 3.46
2682 3367 3.415457 AGAAGAAGAAGAAGCTGGTGG 57.585 47.619 0.00 0.00 0.00 4.61
2683 3368 3.750652 GGAAGAAGAAGAAGAAGCTGGTG 59.249 47.826 0.00 0.00 0.00 4.17
2684 3369 3.244735 GGGAAGAAGAAGAAGAAGCTGGT 60.245 47.826 0.00 0.00 0.00 4.00
2685 3370 3.244700 TGGGAAGAAGAAGAAGAAGCTGG 60.245 47.826 0.00 0.00 0.00 4.85
2686 3371 4.002316 CTGGGAAGAAGAAGAAGAAGCTG 58.998 47.826 0.00 0.00 0.00 4.24
2687 3372 3.008923 CCTGGGAAGAAGAAGAAGAAGCT 59.991 47.826 0.00 0.00 0.00 3.74
2688 3373 3.342719 CCTGGGAAGAAGAAGAAGAAGC 58.657 50.000 0.00 0.00 0.00 3.86
2690 3375 2.982488 AGCCTGGGAAGAAGAAGAAGAA 59.018 45.455 0.00 0.00 0.00 2.52
2691 3376 2.304180 CAGCCTGGGAAGAAGAAGAAGA 59.696 50.000 0.00 0.00 0.00 2.87
2692 3377 2.709213 CAGCCTGGGAAGAAGAAGAAG 58.291 52.381 0.00 0.00 0.00 2.85
2693 3378 1.271597 GCAGCCTGGGAAGAAGAAGAA 60.272 52.381 0.00 0.00 0.00 2.52
2694 3379 0.326264 GCAGCCTGGGAAGAAGAAGA 59.674 55.000 0.00 0.00 0.00 2.87
2698 3383 1.676967 GTGGCAGCCTGGGAAGAAG 60.677 63.158 14.15 0.00 0.00 2.85
2701 3386 2.674380 GTGTGGCAGCCTGGGAAG 60.674 66.667 14.15 0.00 0.00 3.46
2703 3388 3.957586 CTGTGTGGCAGCCTGGGA 61.958 66.667 14.15 0.00 38.52 4.37
2746 3431 4.827087 CTGCCGGCTGCGAGTGAT 62.827 66.667 29.70 0.00 45.60 3.06
2767 3452 4.492160 CGGCGAGGCTAAGCGTGA 62.492 66.667 0.00 0.00 0.00 4.35
2771 3456 3.372554 AAGACCGGCGAGGCTAAGC 62.373 63.158 9.30 5.95 46.52 3.09
2772 3457 1.519455 CAAGACCGGCGAGGCTAAG 60.519 63.158 9.30 0.00 46.52 2.18
2774 3459 4.143333 GCAAGACCGGCGAGGCTA 62.143 66.667 9.30 0.00 46.52 3.93
2815 4326 1.873125 TTAATACCGGACACGCGCG 60.873 57.895 30.96 30.96 39.22 6.86
2816 4327 1.632645 GTTAATACCGGACACGCGC 59.367 57.895 9.46 0.00 39.22 6.86
2820 4331 5.027293 ACATTAGGGTTAATACCGGACAC 57.973 43.478 9.46 0.00 46.04 3.67
2821 4332 6.135454 TCTACATTAGGGTTAATACCGGACA 58.865 40.000 9.46 0.00 46.04 4.02
2826 4337 8.822805 TCCATCATCTACATTAGGGTTAATACC 58.177 37.037 0.00 0.00 44.22 2.73
2827 4338 9.877178 CTCCATCATCTACATTAGGGTTAATAC 57.123 37.037 0.00 0.00 0.00 1.89
2828 4339 9.615660 ACTCCATCATCTACATTAGGGTTAATA 57.384 33.333 0.00 0.00 0.00 0.98
2829 4340 8.511748 ACTCCATCATCTACATTAGGGTTAAT 57.488 34.615 0.00 0.00 0.00 1.40
2830 4341 7.931015 ACTCCATCATCTACATTAGGGTTAA 57.069 36.000 0.00 0.00 0.00 2.01
2831 4342 7.178628 GCTACTCCATCATCTACATTAGGGTTA 59.821 40.741 0.00 0.00 0.00 2.85
2833 4344 5.482175 GCTACTCCATCATCTACATTAGGGT 59.518 44.000 0.00 0.00 0.00 4.34
2834 4345 5.105146 GGCTACTCCATCATCTACATTAGGG 60.105 48.000 0.00 0.00 34.01 3.53
2835 4346 5.105146 GGGCTACTCCATCATCTACATTAGG 60.105 48.000 0.00 0.00 36.21 2.69
2838 4349 4.497516 AGGGCTACTCCATCATCTACATT 58.502 43.478 0.00 0.00 36.21 2.71
2839 4350 4.093011 GAGGGCTACTCCATCATCTACAT 58.907 47.826 0.00 0.00 44.75 2.29
2857 4368 1.746991 GAAAAGGCTCGCCAGAGGG 60.747 63.158 11.02 0.00 44.51 4.30
2858 4369 0.322008 AAGAAAAGGCTCGCCAGAGG 60.322 55.000 11.02 0.00 44.51 3.69
2862 4373 1.523758 GAGAAAGAAAAGGCTCGCCA 58.476 50.000 11.02 0.00 38.92 5.69
2865 4376 2.744741 GGAAGGAGAAAGAAAAGGCTCG 59.255 50.000 0.00 0.00 0.00 5.03
2866 4377 4.027674 AGGAAGGAGAAAGAAAAGGCTC 57.972 45.455 0.00 0.00 0.00 4.70
2871 4382 5.386060 GGAGGAAAGGAAGGAGAAAGAAAA 58.614 41.667 0.00 0.00 0.00 2.29
2891 4402 1.661112 GATTTTGAGAGTTCGCCGGAG 59.339 52.381 5.05 0.00 0.00 4.63
2892 4403 1.722011 GATTTTGAGAGTTCGCCGGA 58.278 50.000 5.05 0.00 0.00 5.14
2894 4405 1.059264 GTCGATTTTGAGAGTTCGCCG 59.941 52.381 0.00 0.00 0.00 6.46
2896 4407 2.987149 TCAGTCGATTTTGAGAGTTCGC 59.013 45.455 0.00 0.00 0.00 4.70
2899 4410 3.557264 GGGGTCAGTCGATTTTGAGAGTT 60.557 47.826 0.00 0.00 0.00 3.01
2900 4411 2.028020 GGGGTCAGTCGATTTTGAGAGT 60.028 50.000 0.00 0.00 0.00 3.24
2901 4412 2.028112 TGGGGTCAGTCGATTTTGAGAG 60.028 50.000 0.00 0.00 0.00 3.20
2904 4415 2.940994 TTGGGGTCAGTCGATTTTGA 57.059 45.000 0.00 0.00 0.00 2.69
2906 4417 6.658188 TTTAAATTGGGGTCAGTCGATTTT 57.342 33.333 0.00 0.00 31.59 1.82
2908 4419 6.850752 ATTTTAAATTGGGGTCAGTCGATT 57.149 33.333 0.00 0.00 0.00 3.34
2909 4420 6.435904 TGAATTTTAAATTGGGGTCAGTCGAT 59.564 34.615 7.72 0.00 0.00 3.59
2910 4421 5.770663 TGAATTTTAAATTGGGGTCAGTCGA 59.229 36.000 7.72 0.00 0.00 4.20
2911 4422 6.019779 TGAATTTTAAATTGGGGTCAGTCG 57.980 37.500 7.72 0.00 0.00 4.18
2912 4423 7.275560 CGAATGAATTTTAAATTGGGGTCAGTC 59.724 37.037 7.72 7.08 0.00 3.51
2913 4424 7.039363 TCGAATGAATTTTAAATTGGGGTCAGT 60.039 33.333 7.72 0.00 0.00 3.41
2915 4426 7.093992 GTCGAATGAATTTTAAATTGGGGTCA 58.906 34.615 7.72 0.00 0.00 4.02
2917 4428 6.403049 GGTCGAATGAATTTTAAATTGGGGT 58.597 36.000 7.72 0.00 0.00 4.95
2919 4430 6.096695 ACGGTCGAATGAATTTTAAATTGGG 58.903 36.000 7.72 0.00 0.00 4.12
2920 4431 6.804295 TGACGGTCGAATGAATTTTAAATTGG 59.196 34.615 7.72 0.00 0.00 3.16
2921 4432 7.789341 TGACGGTCGAATGAATTTTAAATTG 57.211 32.000 7.72 0.00 0.00 2.32
2923 4434 8.980143 AAATGACGGTCGAATGAATTTTAAAT 57.020 26.923 3.34 0.00 0.00 1.40
2924 4435 9.549509 CTAAATGACGGTCGAATGAATTTTAAA 57.450 29.630 3.34 0.00 0.00 1.52
2926 4437 7.065324 AGCTAAATGACGGTCGAATGAATTTTA 59.935 33.333 3.34 0.00 0.00 1.52
2927 4438 6.027749 GCTAAATGACGGTCGAATGAATTTT 58.972 36.000 3.34 0.00 0.00 1.82
2928 4439 5.354234 AGCTAAATGACGGTCGAATGAATTT 59.646 36.000 3.34 5.55 0.00 1.82
2929 4440 4.876107 AGCTAAATGACGGTCGAATGAATT 59.124 37.500 3.34 0.00 0.00 2.17
2930 4441 4.442706 AGCTAAATGACGGTCGAATGAAT 58.557 39.130 3.34 0.00 0.00 2.57
2931 4442 3.857052 AGCTAAATGACGGTCGAATGAA 58.143 40.909 3.34 0.00 0.00 2.57
2932 4443 3.520290 AGCTAAATGACGGTCGAATGA 57.480 42.857 3.34 0.00 0.00 2.57
2934 4445 5.234329 CACATTAGCTAAATGACGGTCGAAT 59.766 40.000 10.85 0.00 46.81 3.34
2935 4446 4.565166 CACATTAGCTAAATGACGGTCGAA 59.435 41.667 10.85 0.00 46.81 3.71
2937 4448 3.245284 CCACATTAGCTAAATGACGGTCG 59.755 47.826 18.21 2.16 46.81 4.79
2940 4451 6.650807 ACATATCCACATTAGCTAAATGACGG 59.349 38.462 18.21 16.31 46.81 4.79
2949 4460 9.905713 TTTTCTCTTAACATATCCACATTAGCT 57.094 29.630 0.00 0.00 0.00 3.32
2976 4487 8.048534 ACACGATTTCATCAGATCAGATTTTT 57.951 30.769 0.00 0.00 0.00 1.94
2977 4488 7.621428 ACACGATTTCATCAGATCAGATTTT 57.379 32.000 0.00 0.00 0.00 1.82
2980 4491 6.809869 TGTACACGATTTCATCAGATCAGAT 58.190 36.000 0.00 0.00 0.00 2.90
2982 4493 6.311200 TGTTGTACACGATTTCATCAGATCAG 59.689 38.462 0.00 0.00 0.00 2.90
2983 4494 6.162777 TGTTGTACACGATTTCATCAGATCA 58.837 36.000 0.00 0.00 0.00 2.92
2985 4496 7.433708 TTTGTTGTACACGATTTCATCAGAT 57.566 32.000 0.00 0.00 0.00 2.90
2986 4497 6.852858 TTTGTTGTACACGATTTCATCAGA 57.147 33.333 0.00 0.00 0.00 3.27
2987 4498 9.051027 GTAATTTGTTGTACACGATTTCATCAG 57.949 33.333 0.00 0.00 0.00 2.90
2988 4499 8.560374 TGTAATTTGTTGTACACGATTTCATCA 58.440 29.630 0.00 0.00 0.00 3.07
2990 4501 8.779303 TCTGTAATTTGTTGTACACGATTTCAT 58.221 29.630 0.00 0.00 0.00 2.57
2991 4502 8.144155 TCTGTAATTTGTTGTACACGATTTCA 57.856 30.769 0.00 0.00 0.00 2.69
2993 4504 9.393249 CATTCTGTAATTTGTTGTACACGATTT 57.607 29.630 0.00 0.00 0.00 2.17
2994 4505 8.020819 CCATTCTGTAATTTGTTGTACACGATT 58.979 33.333 0.00 0.00 0.00 3.34
2995 4506 7.174253 ACCATTCTGTAATTTGTTGTACACGAT 59.826 33.333 0.00 0.00 0.00 3.73
2996 4507 6.483974 ACCATTCTGTAATTTGTTGTACACGA 59.516 34.615 0.00 0.00 0.00 4.35
2997 4508 6.664515 ACCATTCTGTAATTTGTTGTACACG 58.335 36.000 0.00 0.00 0.00 4.49
2999 4510 9.121658 TGTTACCATTCTGTAATTTGTTGTACA 57.878 29.630 0.00 0.00 33.58 2.90
3006 4517 7.803189 GCCGATATGTTACCATTCTGTAATTTG 59.197 37.037 0.00 0.00 33.58 2.32
3009 4520 6.530120 TGCCGATATGTTACCATTCTGTAAT 58.470 36.000 0.00 0.00 33.58 1.89
3010 4521 5.919755 TGCCGATATGTTACCATTCTGTAA 58.080 37.500 0.00 0.00 32.29 2.41
3011 4522 5.538849 TGCCGATATGTTACCATTCTGTA 57.461 39.130 0.00 0.00 32.29 2.74
3012 4523 4.415881 TGCCGATATGTTACCATTCTGT 57.584 40.909 0.00 0.00 32.29 3.41
3013 4524 4.816385 AGTTGCCGATATGTTACCATTCTG 59.184 41.667 0.00 0.00 32.29 3.02
3014 4525 5.036117 AGTTGCCGATATGTTACCATTCT 57.964 39.130 0.00 0.00 32.29 2.40
3016 4527 6.116806 TGTTAGTTGCCGATATGTTACCATT 58.883 36.000 0.00 0.00 32.29 3.16
3017 4528 5.676552 TGTTAGTTGCCGATATGTTACCAT 58.323 37.500 0.00 0.00 34.97 3.55
3019 4530 5.583457 AGTTGTTAGTTGCCGATATGTTACC 59.417 40.000 0.00 0.00 0.00 2.85
3020 4531 6.657836 AGTTGTTAGTTGCCGATATGTTAC 57.342 37.500 0.00 0.00 0.00 2.50
3059 6279 8.829373 AGCACATGATCCTATCACTGTATATA 57.171 34.615 0.00 0.00 43.01 0.86
3060 6280 7.730672 AGCACATGATCCTATCACTGTATAT 57.269 36.000 0.00 0.00 43.01 0.86
3065 6285 4.261072 GCAAAGCACATGATCCTATCACTG 60.261 45.833 0.00 0.00 43.01 3.66
3067 6287 3.004106 GGCAAAGCACATGATCCTATCAC 59.996 47.826 0.00 0.00 43.01 3.06
3073 6293 1.031571 TCCGGCAAAGCACATGATCC 61.032 55.000 0.00 0.00 0.00 3.36
3074 6294 1.027357 ATCCGGCAAAGCACATGATC 58.973 50.000 0.00 0.00 0.00 2.92
3090 6310 8.414778 GGGTAATCTGTACTACAGCATATATCC 58.585 40.741 10.92 7.35 45.54 2.59
3093 6313 7.476153 AGGGGTAATCTGTACTACAGCATATA 58.524 38.462 10.92 0.00 45.54 0.86
3101 6330 5.181622 CAGATCGAGGGGTAATCTGTACTAC 59.818 48.000 2.46 0.00 40.86 2.73
3106 6335 2.959707 GTCAGATCGAGGGGTAATCTGT 59.040 50.000 9.17 0.00 44.33 3.41
3109 6338 2.297597 CTGGTCAGATCGAGGGGTAATC 59.702 54.545 0.00 0.00 0.00 1.75
3113 6342 0.041238 TTCTGGTCAGATCGAGGGGT 59.959 55.000 1.16 0.00 37.29 4.95
3115 6344 0.749649 CCTTCTGGTCAGATCGAGGG 59.250 60.000 1.16 0.00 37.29 4.30
3120 6349 0.842635 ATGCCCCTTCTGGTCAGATC 59.157 55.000 1.16 0.00 37.29 2.75
3125 6354 0.179936 CAGAGATGCCCCTTCTGGTC 59.820 60.000 0.00 0.00 0.00 4.02
3127 6356 1.138568 ATCAGAGATGCCCCTTCTGG 58.861 55.000 1.38 0.00 0.00 3.86
3133 6362 1.672881 CGTTCAAATCAGAGATGCCCC 59.327 52.381 0.00 0.00 0.00 5.80
3134 6363 1.672881 CCGTTCAAATCAGAGATGCCC 59.327 52.381 0.00 0.00 0.00 5.36
3147 6384 3.053291 GCATGTCCGGCCGTTCAA 61.053 61.111 26.12 6.98 0.00 2.69
3190 6427 1.755959 ACTAGCACAGATCTGGAGCAG 59.244 52.381 31.22 27.00 37.91 4.24
3231 6468 4.191544 GGAGCACATGTGTATAGAAAGCA 58.808 43.478 26.01 0.00 0.00 3.91
3232 6469 4.191544 TGGAGCACATGTGTATAGAAAGC 58.808 43.478 26.01 9.17 0.00 3.51
3233 6470 5.664457 TCTGGAGCACATGTGTATAGAAAG 58.336 41.667 26.01 14.43 0.00 2.62
3234 6471 5.675684 TCTGGAGCACATGTGTATAGAAA 57.324 39.130 26.01 5.38 0.00 2.52
3235 6472 5.600069 AGATCTGGAGCACATGTGTATAGAA 59.400 40.000 26.01 9.67 0.00 2.10
3236 6473 5.143369 AGATCTGGAGCACATGTGTATAGA 58.857 41.667 26.01 21.90 0.00 1.98
3237 6474 5.465532 AGATCTGGAGCACATGTGTATAG 57.534 43.478 26.01 18.09 0.00 1.31
3238 6475 5.876651 AAGATCTGGAGCACATGTGTATA 57.123 39.130 26.01 10.22 0.00 1.47
3239 6476 4.767578 AAGATCTGGAGCACATGTGTAT 57.232 40.909 26.01 15.70 0.00 2.29
3240 6477 4.256110 CAAAGATCTGGAGCACATGTGTA 58.744 43.478 26.01 10.23 0.00 2.90
3241 6478 3.079578 CAAAGATCTGGAGCACATGTGT 58.920 45.455 26.01 13.47 0.00 3.72
3242 6479 2.159421 GCAAAGATCTGGAGCACATGTG 60.159 50.000 21.83 21.83 0.00 3.21
3243 6480 2.089980 GCAAAGATCTGGAGCACATGT 58.910 47.619 0.00 0.00 0.00 3.21
3244 6481 1.404391 GGCAAAGATCTGGAGCACATG 59.596 52.381 14.03 0.00 0.00 3.21
3245 6482 1.760192 GGCAAAGATCTGGAGCACAT 58.240 50.000 14.03 0.00 0.00 3.21
3246 6483 0.674581 CGGCAAAGATCTGGAGCACA 60.675 55.000 14.03 0.00 0.00 4.57
3247 6484 0.674895 ACGGCAAAGATCTGGAGCAC 60.675 55.000 14.03 5.25 0.00 4.40
3260 6497 2.904866 GTCCCAGCACAACGGCAA 60.905 61.111 0.00 0.00 35.83 4.52
3280 6517 8.072567 CCATACAAGAAAATTAGTAGCATGAGC 58.927 37.037 0.00 0.00 42.56 4.26
3281 6518 9.113838 ACCATACAAGAAAATTAGTAGCATGAG 57.886 33.333 0.00 0.00 0.00 2.90
3282 6519 9.461312 AACCATACAAGAAAATTAGTAGCATGA 57.539 29.630 0.00 0.00 0.00 3.07
3332 6569 0.379669 GCCATGTGAGCCATTCTTCG 59.620 55.000 0.00 0.00 0.00 3.79
3341 6578 2.191641 GAGGGAGGCCATGTGAGC 59.808 66.667 5.01 0.00 0.00 4.26
3342 6579 0.549950 ATTGAGGGAGGCCATGTGAG 59.450 55.000 5.01 0.00 0.00 3.51
3343 6580 1.891933 TATTGAGGGAGGCCATGTGA 58.108 50.000 5.01 0.00 0.00 3.58
3344 6581 2.965671 ATATTGAGGGAGGCCATGTG 57.034 50.000 5.01 0.00 0.00 3.21
3345 6582 5.700402 GTATATATTGAGGGAGGCCATGT 57.300 43.478 5.01 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.