Multiple sequence alignment - TraesCS2B01G048400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G048400 | chr2B | 100.000 | 3299 | 0 | 0 | 1 | 3299 | 24088537 | 24091835 | 0.000000e+00 | 6093.0 |
1 | TraesCS2B01G048400 | chr2B | 87.619 | 1785 | 156 | 39 | 987 | 2734 | 17874042 | 17872286 | 0.000000e+00 | 2012.0 |
2 | TraesCS2B01G048400 | chr2B | 80.608 | 691 | 68 | 32 | 609 | 1270 | 17883694 | 17883041 | 1.070000e-129 | 473.0 |
3 | TraesCS2B01G048400 | chr2D | 92.151 | 2064 | 103 | 28 | 589 | 2612 | 13421009 | 13423053 | 0.000000e+00 | 2859.0 |
4 | TraesCS2B01G048400 | chr2D | 86.636 | 1766 | 175 | 43 | 961 | 2714 | 11509941 | 11508225 | 0.000000e+00 | 1897.0 |
5 | TraesCS2B01G048400 | chr2D | 92.733 | 1032 | 75 | 0 | 1299 | 2330 | 617052674 | 617053705 | 0.000000e+00 | 1491.0 |
6 | TraesCS2B01G048400 | chr2D | 91.816 | 1063 | 87 | 0 | 1297 | 2359 | 11477722 | 11476660 | 0.000000e+00 | 1482.0 |
7 | TraesCS2B01G048400 | chr2D | 93.254 | 252 | 13 | 4 | 960 | 1209 | 11478088 | 11477839 | 5.200000e-98 | 368.0 |
8 | TraesCS2B01G048400 | chr2D | 78.369 | 282 | 24 | 18 | 3027 | 3299 | 13424242 | 13424495 | 7.380000e-32 | 148.0 |
9 | TraesCS2B01G048400 | chr2A | 91.714 | 1750 | 97 | 18 | 686 | 2405 | 15394541 | 15396272 | 0.000000e+00 | 2385.0 |
10 | TraesCS2B01G048400 | chr2A | 90.755 | 1417 | 99 | 20 | 960 | 2375 | 12073521 | 12072136 | 0.000000e+00 | 1862.0 |
11 | TraesCS2B01G048400 | chr2A | 87.393 | 1642 | 147 | 34 | 748 | 2366 | 12048848 | 12047244 | 0.000000e+00 | 1831.0 |
12 | TraesCS2B01G048400 | chr2A | 91.820 | 1308 | 87 | 8 | 995 | 2300 | 12103307 | 12102018 | 0.000000e+00 | 1805.0 |
13 | TraesCS2B01G048400 | chr2A | 90.652 | 353 | 17 | 6 | 2264 | 2612 | 15398761 | 15399101 | 3.880000e-124 | 455.0 |
14 | TraesCS2B01G048400 | chr2A | 92.419 | 277 | 21 | 0 | 3023 | 3299 | 15399775 | 15400051 | 2.390000e-106 | 396.0 |
15 | TraesCS2B01G048400 | chr7B | 92.338 | 509 | 9 | 15 | 1 | 495 | 12274257 | 12274749 | 0.000000e+00 | 697.0 |
16 | TraesCS2B01G048400 | chr7B | 93.632 | 424 | 13 | 1 | 1 | 410 | 12267783 | 12267360 | 3.620000e-174 | 621.0 |
17 | TraesCS2B01G048400 | chr7B | 93.372 | 347 | 9 | 1 | 1 | 333 | 12289065 | 12289411 | 4.910000e-138 | 501.0 |
18 | TraesCS2B01G048400 | chr7B | 88.972 | 399 | 19 | 7 | 1 | 399 | 93446408 | 93446035 | 1.390000e-128 | 470.0 |
19 | TraesCS2B01G048400 | chr7B | 88.636 | 396 | 20 | 7 | 1 | 396 | 93467434 | 93467804 | 3.000000e-125 | 459.0 |
20 | TraesCS2B01G048400 | chr7B | 87.535 | 361 | 17 | 10 | 1 | 361 | 93460231 | 93460563 | 3.090000e-105 | 392.0 |
21 | TraesCS2B01G048400 | chr7B | 86.835 | 357 | 21 | 8 | 1 | 357 | 93445157 | 93444827 | 3.110000e-100 | 375.0 |
22 | TraesCS2B01G048400 | chr7B | 87.387 | 333 | 14 | 7 | 1 | 330 | 652115425 | 652115732 | 1.130000e-94 | 357.0 |
23 | TraesCS2B01G048400 | chr7B | 86.667 | 330 | 19 | 7 | 1 | 330 | 93461457 | 93461761 | 3.150000e-90 | 342.0 |
24 | TraesCS2B01G048400 | chr7B | 87.302 | 315 | 14 | 5 | 1 | 315 | 652129514 | 652129802 | 1.470000e-88 | 337.0 |
25 | TraesCS2B01G048400 | chr7B | 86.420 | 324 | 19 | 3 | 1 | 324 | 652089854 | 652090152 | 6.820000e-87 | 331.0 |
26 | TraesCS2B01G048400 | chr7B | 87.826 | 115 | 13 | 1 | 382 | 495 | 12289379 | 12289493 | 2.070000e-27 | 134.0 |
27 | TraesCS2B01G048400 | chr7B | 91.892 | 74 | 6 | 0 | 422 | 495 | 652121718 | 652121791 | 1.620000e-18 | 104.0 |
28 | TraesCS2B01G048400 | chr7A | 79.762 | 252 | 30 | 12 | 2486 | 2734 | 352181624 | 352181857 | 2.630000e-36 | 163.0 |
29 | TraesCS2B01G048400 | chr6B | 90.099 | 101 | 5 | 5 | 394 | 491 | 31025266 | 31025168 | 3.460000e-25 | 126.0 |
30 | TraesCS2B01G048400 | chr3B | 80.000 | 140 | 24 | 4 | 358 | 495 | 778255486 | 778255349 | 2.090000e-17 | 100.0 |
31 | TraesCS2B01G048400 | chrUn | 90.411 | 73 | 7 | 0 | 2739 | 2811 | 93409620 | 93409692 | 2.710000e-16 | 97.1 |
32 | TraesCS2B01G048400 | chrUn | 90.411 | 73 | 7 | 0 | 2739 | 2811 | 216518591 | 216518663 | 2.710000e-16 | 97.1 |
33 | TraesCS2B01G048400 | chrUn | 90.411 | 73 | 7 | 0 | 2739 | 2811 | 216521979 | 216522051 | 2.710000e-16 | 97.1 |
34 | TraesCS2B01G048400 | chrUn | 90.411 | 73 | 7 | 0 | 2739 | 2811 | 372771642 | 372771714 | 2.710000e-16 | 97.1 |
35 | TraesCS2B01G048400 | chr6D | 90.411 | 73 | 7 | 0 | 2739 | 2811 | 168254937 | 168254865 | 2.710000e-16 | 97.1 |
36 | TraesCS2B01G048400 | chr6D | 90.411 | 73 | 7 | 0 | 2739 | 2811 | 212227583 | 212227655 | 2.710000e-16 | 97.1 |
37 | TraesCS2B01G048400 | chr4D | 90.411 | 73 | 7 | 0 | 2739 | 2811 | 78739260 | 78739332 | 2.710000e-16 | 97.1 |
38 | TraesCS2B01G048400 | chr3D | 87.952 | 83 | 9 | 1 | 2730 | 2811 | 571591979 | 571592061 | 2.710000e-16 | 97.1 |
39 | TraesCS2B01G048400 | chr1D | 90.411 | 73 | 7 | 0 | 2739 | 2811 | 397088920 | 397088992 | 2.710000e-16 | 97.1 |
40 | TraesCS2B01G048400 | chr5D | 93.548 | 62 | 4 | 0 | 431 | 492 | 414065186 | 414065247 | 3.510000e-15 | 93.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G048400 | chr2B | 24088537 | 24091835 | 3298 | False | 6093.000000 | 6093 | 100.0000 | 1 | 3299 | 1 | chr2B.!!$F1 | 3298 |
1 | TraesCS2B01G048400 | chr2B | 17872286 | 17874042 | 1756 | True | 2012.000000 | 2012 | 87.6190 | 987 | 2734 | 1 | chr2B.!!$R1 | 1747 |
2 | TraesCS2B01G048400 | chr2B | 17883041 | 17883694 | 653 | True | 473.000000 | 473 | 80.6080 | 609 | 1270 | 1 | chr2B.!!$R2 | 661 |
3 | TraesCS2B01G048400 | chr2D | 11508225 | 11509941 | 1716 | True | 1897.000000 | 1897 | 86.6360 | 961 | 2714 | 1 | chr2D.!!$R1 | 1753 |
4 | TraesCS2B01G048400 | chr2D | 13421009 | 13424495 | 3486 | False | 1503.500000 | 2859 | 85.2600 | 589 | 3299 | 2 | chr2D.!!$F2 | 2710 |
5 | TraesCS2B01G048400 | chr2D | 617052674 | 617053705 | 1031 | False | 1491.000000 | 1491 | 92.7330 | 1299 | 2330 | 1 | chr2D.!!$F1 | 1031 |
6 | TraesCS2B01G048400 | chr2D | 11476660 | 11478088 | 1428 | True | 925.000000 | 1482 | 92.5350 | 960 | 2359 | 2 | chr2D.!!$R2 | 1399 |
7 | TraesCS2B01G048400 | chr2A | 12072136 | 12073521 | 1385 | True | 1862.000000 | 1862 | 90.7550 | 960 | 2375 | 1 | chr2A.!!$R2 | 1415 |
8 | TraesCS2B01G048400 | chr2A | 12047244 | 12048848 | 1604 | True | 1831.000000 | 1831 | 87.3930 | 748 | 2366 | 1 | chr2A.!!$R1 | 1618 |
9 | TraesCS2B01G048400 | chr2A | 12102018 | 12103307 | 1289 | True | 1805.000000 | 1805 | 91.8200 | 995 | 2300 | 1 | chr2A.!!$R3 | 1305 |
10 | TraesCS2B01G048400 | chr2A | 15394541 | 15400051 | 5510 | False | 1078.666667 | 2385 | 91.5950 | 686 | 3299 | 3 | chr2A.!!$F1 | 2613 |
11 | TraesCS2B01G048400 | chr7B | 93444827 | 93446408 | 1581 | True | 422.500000 | 470 | 87.9035 | 1 | 399 | 2 | chr7B.!!$R2 | 398 |
12 | TraesCS2B01G048400 | chr7B | 93460231 | 93461761 | 1530 | False | 367.000000 | 392 | 87.1010 | 1 | 361 | 2 | chr7B.!!$F8 | 360 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
562 | 566 | 0.035056 | ACAATTCTCGGGCCTTCAGG | 60.035 | 55.0 | 0.84 | 0.0 | 38.53 | 3.86 | F |
563 | 567 | 0.253044 | CAATTCTCGGGCCTTCAGGA | 59.747 | 55.0 | 0.84 | 0.0 | 37.39 | 3.86 | F |
1992 | 2399 | 0.251341 | AGGACGCCTTCAAGCCAATT | 60.251 | 50.0 | 0.00 | 0.0 | 0.00 | 2.32 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1992 | 2399 | 0.904649 | AGTTCCAGTCATCGATGCCA | 59.095 | 50.000 | 20.81 | 1.1 | 0.0 | 4.92 | R |
2205 | 2612 | 2.190578 | CAGTCCATTCCCTCGCCC | 59.809 | 66.667 | 0.00 | 0.0 | 0.0 | 6.13 | R |
2833 | 5965 | 0.038599 | TACGACTAGGCCCACACAGA | 59.961 | 55.000 | 0.00 | 0.0 | 0.0 | 3.41 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
161 | 162 | 7.420800 | CAACTCTTGCCATGATTTATACTTCC | 58.579 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
162 | 163 | 6.662755 | ACTCTTGCCATGATTTATACTTCCA | 58.337 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
163 | 164 | 6.543831 | ACTCTTGCCATGATTTATACTTCCAC | 59.456 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
164 | 165 | 5.527214 | TCTTGCCATGATTTATACTTCCACG | 59.473 | 40.000 | 0.00 | 0.00 | 0.00 | 4.94 |
165 | 166 | 3.563808 | TGCCATGATTTATACTTCCACGC | 59.436 | 43.478 | 0.00 | 0.00 | 0.00 | 5.34 |
170 | 171 | 3.625764 | TGATTTATACTTCCACGCCTTGC | 59.374 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
178 | 179 | 4.424566 | CACGCCTTGCATGCACCC | 62.425 | 66.667 | 22.58 | 10.55 | 0.00 | 4.61 |
181 | 182 | 2.677524 | GCCTTGCATGCACCCTGA | 60.678 | 61.111 | 22.58 | 4.02 | 0.00 | 3.86 |
186 | 187 | 1.611977 | CTTGCATGCACCCTGATATGG | 59.388 | 52.381 | 22.58 | 0.00 | 0.00 | 2.74 |
245 | 246 | 3.703001 | TGGATGAAGGGTCTTGTCTTC | 57.297 | 47.619 | 0.00 | 0.00 | 39.66 | 2.87 |
252 | 253 | 6.877611 | TGAAGGGTCTTGTCTTCAATTAAC | 57.122 | 37.500 | 3.63 | 0.00 | 44.14 | 2.01 |
253 | 254 | 6.601332 | TGAAGGGTCTTGTCTTCAATTAACT | 58.399 | 36.000 | 3.63 | 0.00 | 44.14 | 2.24 |
254 | 255 | 6.710744 | TGAAGGGTCTTGTCTTCAATTAACTC | 59.289 | 38.462 | 3.63 | 0.00 | 44.14 | 3.01 |
255 | 256 | 5.561679 | AGGGTCTTGTCTTCAATTAACTCC | 58.438 | 41.667 | 0.00 | 0.00 | 32.82 | 3.85 |
256 | 257 | 5.310857 | AGGGTCTTGTCTTCAATTAACTCCT | 59.689 | 40.000 | 0.00 | 0.00 | 32.82 | 3.69 |
257 | 258 | 6.004574 | GGGTCTTGTCTTCAATTAACTCCTT | 58.995 | 40.000 | 0.00 | 0.00 | 32.82 | 3.36 |
260 | 261 | 7.391833 | GGTCTTGTCTTCAATTAACTCCTTGAT | 59.608 | 37.037 | 0.00 | 0.00 | 31.83 | 2.57 |
267 | 268 | 7.611855 | TCTTCAATTAACTCCTTGATCTTTCCC | 59.388 | 37.037 | 0.00 | 0.00 | 31.83 | 3.97 |
453 | 457 | 4.918588 | GGTCTACCCCACCCATATTATTG | 58.081 | 47.826 | 0.00 | 0.00 | 0.00 | 1.90 |
454 | 458 | 4.600111 | GGTCTACCCCACCCATATTATTGA | 59.400 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
455 | 459 | 5.253096 | GGTCTACCCCACCCATATTATTGAT | 59.747 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
456 | 460 | 6.445786 | GGTCTACCCCACCCATATTATTGATA | 59.554 | 42.308 | 0.00 | 0.00 | 0.00 | 2.15 |
457 | 461 | 7.037153 | GGTCTACCCCACCCATATTATTGATAA | 60.037 | 40.741 | 0.00 | 0.00 | 0.00 | 1.75 |
458 | 462 | 8.557450 | GTCTACCCCACCCATATTATTGATAAT | 58.443 | 37.037 | 2.18 | 2.18 | 36.89 | 1.28 |
459 | 463 | 9.806702 | TCTACCCCACCCATATTATTGATAATA | 57.193 | 33.333 | 6.05 | 6.05 | 38.97 | 0.98 |
460 | 464 | 9.847224 | CTACCCCACCCATATTATTGATAATAC | 57.153 | 37.037 | 5.77 | 0.00 | 37.86 | 1.89 |
461 | 465 | 7.648770 | ACCCCACCCATATTATTGATAATACC | 58.351 | 38.462 | 5.77 | 0.00 | 37.86 | 2.73 |
462 | 466 | 7.467519 | ACCCCACCCATATTATTGATAATACCT | 59.532 | 37.037 | 5.77 | 0.00 | 37.86 | 3.08 |
463 | 467 | 8.343787 | CCCCACCCATATTATTGATAATACCTT | 58.656 | 37.037 | 5.77 | 0.00 | 37.86 | 3.50 |
495 | 499 | 6.721571 | TTCGAATTCTATCAATATTCGGGC | 57.278 | 37.500 | 14.16 | 0.00 | 46.34 | 6.13 |
498 | 502 | 7.289310 | TCGAATTCTATCAATATTCGGGCACC | 61.289 | 42.308 | 14.16 | 0.00 | 46.34 | 5.01 |
551 | 555 | 9.482627 | AATTATCGTTCTGGAGATACAATTCTC | 57.517 | 33.333 | 0.00 | 0.00 | 41.21 | 2.87 |
552 | 556 | 4.921547 | TCGTTCTGGAGATACAATTCTCG | 58.078 | 43.478 | 0.00 | 0.00 | 42.57 | 4.04 |
553 | 557 | 4.045104 | CGTTCTGGAGATACAATTCTCGG | 58.955 | 47.826 | 0.00 | 0.00 | 42.57 | 4.63 |
554 | 558 | 4.372656 | GTTCTGGAGATACAATTCTCGGG | 58.627 | 47.826 | 0.00 | 0.00 | 42.57 | 5.14 |
555 | 559 | 2.365617 | TCTGGAGATACAATTCTCGGGC | 59.634 | 50.000 | 0.00 | 0.00 | 42.57 | 6.13 |
556 | 560 | 1.416401 | TGGAGATACAATTCTCGGGCC | 59.584 | 52.381 | 0.00 | 0.00 | 42.57 | 5.80 |
559 | 563 | 3.394719 | GAGATACAATTCTCGGGCCTTC | 58.605 | 50.000 | 0.84 | 0.00 | 33.35 | 3.46 |
560 | 564 | 2.771943 | AGATACAATTCTCGGGCCTTCA | 59.228 | 45.455 | 0.84 | 0.00 | 0.00 | 3.02 |
562 | 566 | 0.035056 | ACAATTCTCGGGCCTTCAGG | 60.035 | 55.000 | 0.84 | 0.00 | 38.53 | 3.86 |
563 | 567 | 0.253044 | CAATTCTCGGGCCTTCAGGA | 59.747 | 55.000 | 0.84 | 0.00 | 37.39 | 3.86 |
564 | 568 | 0.543749 | AATTCTCGGGCCTTCAGGAG | 59.456 | 55.000 | 0.84 | 0.00 | 37.39 | 3.69 |
566 | 570 | 0.325671 | TTCTCGGGCCTTCAGGAGAT | 60.326 | 55.000 | 0.84 | 0.00 | 35.63 | 2.75 |
567 | 571 | 0.556258 | TCTCGGGCCTTCAGGAGATA | 59.444 | 55.000 | 0.84 | 0.00 | 37.39 | 1.98 |
568 | 572 | 0.676736 | CTCGGGCCTTCAGGAGATAC | 59.323 | 60.000 | 0.84 | 0.00 | 37.39 | 2.24 |
570 | 574 | 0.830648 | CGGGCCTTCAGGAGATACAA | 59.169 | 55.000 | 0.84 | 0.00 | 37.39 | 2.41 |
573 | 577 | 3.217626 | GGGCCTTCAGGAGATACAATTG | 58.782 | 50.000 | 0.84 | 3.24 | 37.39 | 2.32 |
574 | 578 | 3.372025 | GGGCCTTCAGGAGATACAATTGT | 60.372 | 47.826 | 16.68 | 16.68 | 37.39 | 2.71 |
575 | 579 | 3.879892 | GGCCTTCAGGAGATACAATTGTC | 59.120 | 47.826 | 15.85 | 1.24 | 37.39 | 3.18 |
576 | 580 | 3.557595 | GCCTTCAGGAGATACAATTGTCG | 59.442 | 47.826 | 15.85 | 0.00 | 37.39 | 4.35 |
577 | 581 | 4.759782 | CCTTCAGGAGATACAATTGTCGT | 58.240 | 43.478 | 15.85 | 5.15 | 37.39 | 4.34 |
578 | 582 | 5.178797 | CCTTCAGGAGATACAATTGTCGTT | 58.821 | 41.667 | 15.85 | 0.99 | 37.39 | 3.85 |
581 | 585 | 5.410924 | TCAGGAGATACAATTGTCGTTCTG | 58.589 | 41.667 | 15.85 | 14.29 | 0.00 | 3.02 |
582 | 586 | 4.033358 | CAGGAGATACAATTGTCGTTCTGC | 59.967 | 45.833 | 15.85 | 18.91 | 0.00 | 4.26 |
584 | 588 | 4.033358 | GGAGATACAATTGTCGTTCTGCTG | 59.967 | 45.833 | 15.85 | 0.00 | 0.00 | 4.41 |
585 | 589 | 3.935203 | AGATACAATTGTCGTTCTGCTGG | 59.065 | 43.478 | 15.85 | 0.00 | 0.00 | 4.85 |
587 | 591 | 1.603802 | ACAATTGTCGTTCTGCTGGTG | 59.396 | 47.619 | 4.92 | 0.00 | 0.00 | 4.17 |
627 | 631 | 5.623169 | GAGTCCTACTATAGCTGTGGTAGT | 58.377 | 45.833 | 25.26 | 16.40 | 32.33 | 2.73 |
629 | 633 | 6.771573 | AGTCCTACTATAGCTGTGGTAGTAG | 58.228 | 44.000 | 25.26 | 22.17 | 43.62 | 2.57 |
637 | 641 | 1.960471 | GCTGTGGTAGTAGCTGAGGGA | 60.960 | 57.143 | 0.00 | 0.00 | 36.99 | 4.20 |
638 | 642 | 2.457598 | CTGTGGTAGTAGCTGAGGGAA | 58.542 | 52.381 | 0.00 | 0.00 | 0.00 | 3.97 |
651 | 659 | 1.338105 | TGAGGGAATCAAGCACGAGTG | 60.338 | 52.381 | 0.00 | 0.00 | 34.02 | 3.51 |
675 | 683 | 1.681166 | GCAACTGTCTGGGCAGATGAT | 60.681 | 52.381 | 14.87 | 0.00 | 40.34 | 2.45 |
736 | 744 | 0.327259 | GACCCAACTAACCCCCACTC | 59.673 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
738 | 746 | 1.196104 | CCCAACTAACCCCCACTCGA | 61.196 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
820 | 1028 | 1.690219 | CCCTCCATCTTCCCGTCCAG | 61.690 | 65.000 | 0.00 | 0.00 | 0.00 | 3.86 |
840 | 1061 | 1.734465 | GCTGACCAAATCACTTCTCCG | 59.266 | 52.381 | 0.00 | 0.00 | 32.37 | 4.63 |
870 | 1091 | 2.590092 | CAACCCTTCCCGCCTAGG | 59.410 | 66.667 | 3.67 | 3.67 | 40.63 | 3.02 |
872 | 1093 | 1.689582 | AACCCTTCCCGCCTAGGAG | 60.690 | 63.158 | 14.75 | 9.83 | 45.00 | 3.69 |
894 | 1186 | 4.850386 | AGTATATATCCCTTTCCCCACACC | 59.150 | 45.833 | 0.00 | 0.00 | 0.00 | 4.16 |
980 | 1289 | 1.066587 | GCTAGTCGATCAGCCGCTT | 59.933 | 57.895 | 9.44 | 0.00 | 0.00 | 4.68 |
984 | 1293 | 0.530744 | AGTCGATCAGCCGCTTGTAA | 59.469 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
993 | 1314 | 1.277495 | GCCGCTTGTAACGTACGTGT | 61.277 | 55.000 | 23.57 | 14.24 | 0.00 | 4.49 |
1200 | 1531 | 5.426689 | AGAGGATGTGTAAGCTCAATCAA | 57.573 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
1201 | 1532 | 5.999044 | AGAGGATGTGTAAGCTCAATCAAT | 58.001 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
1202 | 1533 | 6.421485 | AGAGGATGTGTAAGCTCAATCAATT | 58.579 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1203 | 1534 | 6.541641 | AGAGGATGTGTAAGCTCAATCAATTC | 59.458 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
1204 | 1535 | 5.591877 | AGGATGTGTAAGCTCAATCAATTCC | 59.408 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1205 | 1536 | 5.357878 | GGATGTGTAAGCTCAATCAATTCCA | 59.642 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1206 | 1537 | 6.040166 | GGATGTGTAAGCTCAATCAATTCCAT | 59.960 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
1207 | 1538 | 6.839124 | TGTGTAAGCTCAATCAATTCCATT | 57.161 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
1208 | 1539 | 6.855836 | TGTGTAAGCTCAATCAATTCCATTC | 58.144 | 36.000 | 0.00 | 0.00 | 0.00 | 2.67 |
1209 | 1540 | 6.127647 | TGTGTAAGCTCAATCAATTCCATTCC | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
1240 | 1587 | 5.547465 | TCTTCTTTGCCGTCTCTTTTATGA | 58.453 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
1272 | 1619 | 1.138047 | GATGGACACGCGACCTAACG | 61.138 | 60.000 | 15.93 | 0.00 | 0.00 | 3.18 |
1280 | 1677 | 1.134226 | CGCGACCTAACGAACAAACT | 58.866 | 50.000 | 0.00 | 0.00 | 35.09 | 2.66 |
1295 | 1702 | 6.803320 | ACGAACAAACTATGCTTCATTTCATG | 59.197 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
1863 | 2270 | 0.382158 | CTGCGAGCCAGACGATTCTA | 59.618 | 55.000 | 0.00 | 0.00 | 44.64 | 2.10 |
1990 | 2397 | 1.302511 | GAGGACGCCTTCAAGCCAA | 60.303 | 57.895 | 0.00 | 0.00 | 31.76 | 4.52 |
1992 | 2399 | 0.251341 | AGGACGCCTTCAAGCCAATT | 60.251 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2067 | 2474 | 1.746615 | CCTTGACATGGTGGAGGCG | 60.747 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
2331 | 2738 | 7.696872 | GCATGATCATTCATTCTCCATTTATCG | 59.303 | 37.037 | 5.16 | 0.00 | 40.70 | 2.92 |
2448 | 5506 | 5.062308 | CGTTTCTTTCCTCTGTGCTACATAC | 59.938 | 44.000 | 0.00 | 0.00 | 0.00 | 2.39 |
2489 | 5553 | 8.082242 | TGAGATCGTTGTGGTATATATGAACTG | 58.918 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
2495 | 5559 | 8.487970 | CGTTGTGGTATATATGAACTGTTGATC | 58.512 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
2525 | 5589 | 9.620660 | ATGATTGAAAGTAACCAATTACGTTTC | 57.379 | 29.630 | 0.00 | 7.19 | 44.69 | 2.78 |
2635 | 5702 | 6.817140 | ACGGAGTGAATGAGTTTAGTAATTCC | 59.183 | 38.462 | 0.00 | 0.00 | 42.51 | 3.01 |
2638 | 5705 | 7.610305 | GGAGTGAATGAGTTTAGTAATTCCCAA | 59.390 | 37.037 | 0.00 | 0.00 | 0.00 | 4.12 |
2673 | 5745 | 9.610705 | TGACTCTATAGATACGGTAATATGGAC | 57.389 | 37.037 | 2.11 | 0.00 | 0.00 | 4.02 |
2696 | 5768 | 6.970484 | ACAAGATAAAATTGTTCGAAGCACT | 58.030 | 32.000 | 0.00 | 0.00 | 37.61 | 4.40 |
2698 | 5770 | 8.040518 | ACAAGATAAAATTGTTCGAAGCACTCG | 61.041 | 37.037 | 0.00 | 2.03 | 39.93 | 4.18 |
2735 | 5807 | 4.324641 | GCCCCTTATTTCAAAGAGAGGACT | 60.325 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
2736 | 5808 | 5.432645 | CCCCTTATTTCAAAGAGAGGACTC | 58.567 | 45.833 | 0.00 | 0.00 | 42.90 | 3.36 |
2739 | 5811 | 3.685139 | ATTTCAAAGAGAGGACTCGCA | 57.315 | 42.857 | 5.88 | 0.00 | 46.64 | 5.10 |
2740 | 5812 | 2.732412 | TTCAAAGAGAGGACTCGCAG | 57.268 | 50.000 | 5.88 | 0.00 | 46.64 | 5.18 |
2743 | 5815 | 2.230025 | TCAAAGAGAGGACTCGCAGAAG | 59.770 | 50.000 | 5.88 | 0.00 | 46.64 | 2.85 |
2744 | 5816 | 0.530288 | AAGAGAGGACTCGCAGAAGC | 59.470 | 55.000 | 5.88 | 0.00 | 46.64 | 3.86 |
2761 | 5893 | 2.112815 | GCGGAGGCGCCACTTATTT | 61.113 | 57.895 | 31.54 | 5.22 | 35.94 | 1.40 |
2762 | 5894 | 2.014594 | CGGAGGCGCCACTTATTTC | 58.985 | 57.895 | 31.54 | 15.47 | 35.94 | 2.17 |
2771 | 5903 | 3.181506 | GCGCCACTTATTTCAAAGAGAGG | 60.182 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
2776 | 5908 | 6.183360 | GCCACTTATTTCAAAGAGAGGATGAC | 60.183 | 42.308 | 4.56 | 0.00 | 0.00 | 3.06 |
2777 | 5909 | 6.036517 | CCACTTATTTCAAAGAGAGGATGACG | 59.963 | 42.308 | 0.00 | 0.00 | 0.00 | 4.35 |
2778 | 5910 | 6.036517 | CACTTATTTCAAAGAGAGGATGACGG | 59.963 | 42.308 | 0.00 | 0.00 | 0.00 | 4.79 |
2779 | 5911 | 3.334583 | TTTCAAAGAGAGGATGACGGG | 57.665 | 47.619 | 0.00 | 0.00 | 0.00 | 5.28 |
2780 | 5912 | 1.938585 | TCAAAGAGAGGATGACGGGT | 58.061 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2781 | 5913 | 2.257207 | TCAAAGAGAGGATGACGGGTT | 58.743 | 47.619 | 0.00 | 0.00 | 0.00 | 4.11 |
2782 | 5914 | 3.437213 | TCAAAGAGAGGATGACGGGTTA | 58.563 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
2783 | 5915 | 4.030913 | TCAAAGAGAGGATGACGGGTTAT | 58.969 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
2784 | 5916 | 4.469945 | TCAAAGAGAGGATGACGGGTTATT | 59.530 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2785 | 5917 | 4.674281 | AAGAGAGGATGACGGGTTATTC | 57.326 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
2787 | 5919 | 3.385111 | AGAGAGGATGACGGGTTATTCAC | 59.615 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
2788 | 5920 | 3.104512 | AGAGGATGACGGGTTATTCACA | 58.895 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
2789 | 5921 | 3.711704 | AGAGGATGACGGGTTATTCACAT | 59.288 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
2790 | 5922 | 4.164221 | AGAGGATGACGGGTTATTCACATT | 59.836 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
2791 | 5923 | 4.855340 | AGGATGACGGGTTATTCACATTT | 58.145 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
2792 | 5924 | 5.996644 | AGGATGACGGGTTATTCACATTTA | 58.003 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2793 | 5925 | 6.419791 | AGGATGACGGGTTATTCACATTTAA | 58.580 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
2794 | 5926 | 7.060421 | AGGATGACGGGTTATTCACATTTAAT | 58.940 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2795 | 5927 | 7.559897 | AGGATGACGGGTTATTCACATTTAATT | 59.440 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2796 | 5928 | 8.194769 | GGATGACGGGTTATTCACATTTAATTT | 58.805 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2797 | 5929 | 8.925161 | ATGACGGGTTATTCACATTTAATTTG | 57.075 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
2798 | 5930 | 8.112016 | TGACGGGTTATTCACATTTAATTTGA | 57.888 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
2799 | 5931 | 8.744652 | TGACGGGTTATTCACATTTAATTTGAT | 58.255 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2800 | 5932 | 8.925161 | ACGGGTTATTCACATTTAATTTGATG | 57.075 | 30.769 | 0.00 | 0.00 | 0.00 | 3.07 |
2801 | 5933 | 7.978975 | ACGGGTTATTCACATTTAATTTGATGG | 59.021 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
2802 | 5934 | 7.042791 | CGGGTTATTCACATTTAATTTGATGGC | 60.043 | 37.037 | 0.00 | 0.00 | 0.00 | 4.40 |
2804 | 5936 | 7.768120 | GGTTATTCACATTTAATTTGATGGCCA | 59.232 | 33.333 | 8.56 | 8.56 | 0.00 | 5.36 |
2806 | 5938 | 5.735285 | TCACATTTAATTTGATGGCCACA | 57.265 | 34.783 | 8.16 | 5.62 | 0.00 | 4.17 |
2807 | 5939 | 5.722263 | TCACATTTAATTTGATGGCCACAG | 58.278 | 37.500 | 8.16 | 0.00 | 0.00 | 3.66 |
2808 | 5940 | 4.871557 | CACATTTAATTTGATGGCCACAGG | 59.128 | 41.667 | 8.16 | 0.00 | 0.00 | 4.00 |
2821 | 5953 | 1.582968 | CACAGGCAGTGGTTGATGC | 59.417 | 57.895 | 1.52 | 0.00 | 44.69 | 3.91 |
2823 | 5955 | 1.968017 | CAGGCAGTGGTTGATGCGT | 60.968 | 57.895 | 0.00 | 0.00 | 43.49 | 5.24 |
2825 | 5957 | 1.081242 | GGCAGTGGTTGATGCGTTG | 60.081 | 57.895 | 0.00 | 0.00 | 43.49 | 4.10 |
2826 | 5958 | 1.081242 | GCAGTGGTTGATGCGTTGG | 60.081 | 57.895 | 0.00 | 0.00 | 31.87 | 3.77 |
2827 | 5959 | 1.514678 | GCAGTGGTTGATGCGTTGGA | 61.515 | 55.000 | 0.00 | 0.00 | 31.87 | 3.53 |
2828 | 5960 | 0.238289 | CAGTGGTTGATGCGTTGGAC | 59.762 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2829 | 5961 | 1.206578 | GTGGTTGATGCGTTGGACG | 59.793 | 57.895 | 0.00 | 0.00 | 45.88 | 4.79 |
2830 | 5962 | 1.227704 | TGGTTGATGCGTTGGACGT | 60.228 | 52.632 | 0.00 | 0.00 | 44.73 | 4.34 |
2831 | 5963 | 0.816018 | TGGTTGATGCGTTGGACGTT | 60.816 | 50.000 | 2.27 | 0.00 | 44.73 | 3.99 |
2832 | 5964 | 0.110373 | GGTTGATGCGTTGGACGTTC | 60.110 | 55.000 | 2.27 | 0.00 | 44.73 | 3.95 |
2833 | 5965 | 0.865769 | GTTGATGCGTTGGACGTTCT | 59.134 | 50.000 | 0.00 | 0.00 | 44.73 | 3.01 |
2834 | 5966 | 1.136336 | GTTGATGCGTTGGACGTTCTC | 60.136 | 52.381 | 0.00 | 0.00 | 44.73 | 2.87 |
2840 | 6049 | 0.852777 | CGTTGGACGTTCTCTGTGTG | 59.147 | 55.000 | 0.00 | 0.00 | 36.74 | 3.82 |
2844 | 6053 | 1.668151 | GACGTTCTCTGTGTGGGCC | 60.668 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
2846 | 6055 | 0.830444 | ACGTTCTCTGTGTGGGCCTA | 60.830 | 55.000 | 4.53 | 0.00 | 0.00 | 3.93 |
2850 | 6059 | 0.965866 | TCTCTGTGTGGGCCTAGTCG | 60.966 | 60.000 | 4.53 | 0.00 | 0.00 | 4.18 |
2852 | 6061 | 0.038599 | TCTGTGTGGGCCTAGTCGTA | 59.961 | 55.000 | 4.53 | 0.00 | 0.00 | 3.43 |
2856 | 6065 | 1.108776 | TGTGGGCCTAGTCGTATGAC | 58.891 | 55.000 | 4.53 | 7.01 | 45.86 | 3.06 |
2865 | 6074 | 3.132863 | GTCGTATGACAACGGCCTT | 57.867 | 52.632 | 10.30 | 0.00 | 44.82 | 4.35 |
2866 | 6075 | 0.997196 | GTCGTATGACAACGGCCTTC | 59.003 | 55.000 | 10.30 | 0.00 | 44.82 | 3.46 |
2877 | 6086 | 1.281656 | CGGCCTTCGTGAAAACACC | 59.718 | 57.895 | 0.00 | 0.00 | 0.00 | 4.16 |
2879 | 6088 | 1.281656 | GCCTTCGTGAAAACACCCG | 59.718 | 57.895 | 0.00 | 0.00 | 0.00 | 5.28 |
2882 | 6091 | 0.306533 | CTTCGTGAAAACACCCGTGG | 59.693 | 55.000 | 0.00 | 0.00 | 34.19 | 4.94 |
2892 | 6101 | 2.518426 | ACCCGTGGTGGCATTTCA | 59.482 | 55.556 | 0.00 | 0.00 | 32.98 | 2.69 |
2895 | 6104 | 0.607620 | CCCGTGGTGGCATTTCATTT | 59.392 | 50.000 | 0.00 | 0.00 | 35.87 | 2.32 |
2906 | 6115 | 5.469421 | GTGGCATTTCATTTCCACATTTGAA | 59.531 | 36.000 | 5.47 | 0.00 | 46.09 | 2.69 |
2910 | 6119 | 7.293018 | GCATTTCATTTCCACATTTGAAGAAC | 58.707 | 34.615 | 0.00 | 0.00 | 30.45 | 3.01 |
2916 | 6125 | 8.369424 | TCATTTCCACATTTGAAGAACAATCAT | 58.631 | 29.630 | 0.00 | 0.00 | 38.36 | 2.45 |
2917 | 6126 | 8.653338 | CATTTCCACATTTGAAGAACAATCATC | 58.347 | 33.333 | 0.00 | 0.00 | 38.36 | 2.92 |
2931 | 6226 | 9.860898 | AAGAACAATCATCAAATAGGCTAAAAC | 57.139 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
2949 | 6244 | 8.352942 | GGCTAAAACAGTGAGATATTTATTGGG | 58.647 | 37.037 | 0.00 | 0.00 | 0.00 | 4.12 |
2957 | 6252 | 9.305555 | CAGTGAGATATTTATTGGGATGGAAAT | 57.694 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2996 | 6291 | 3.374745 | CTTTTTGTCAAGCAATCGCACT | 58.625 | 40.909 | 0.00 | 0.00 | 42.27 | 4.40 |
3062 | 6398 | 2.607750 | TTCTTCGCAGGGGAGCCT | 60.608 | 61.111 | 0.00 | 0.00 | 0.00 | 4.58 |
3103 | 6439 | 2.886523 | TCTGAAACAAGAGCACCATTGG | 59.113 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
3128 | 6464 | 4.946772 | TGATTGGATAAAATTGGTCTGCGA | 59.053 | 37.500 | 0.00 | 0.00 | 0.00 | 5.10 |
3138 | 6474 | 0.461548 | TGGTCTGCGATCATCCACTC | 59.538 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3154 | 6490 | 2.740981 | CCACTCTTGTGCTCTTGTGATC | 59.259 | 50.000 | 0.00 | 0.00 | 42.54 | 2.92 |
3204 | 7090 | 8.229253 | TGCAGAAATAATATGCTCATGACTTT | 57.771 | 30.769 | 0.00 | 0.00 | 40.62 | 2.66 |
3214 | 7100 | 3.072330 | TGCTCATGACTTTACCAACCAGA | 59.928 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
3 | 4 | 5.178996 | CAGTCTGGACAAAATTCTCAGTCTG | 59.821 | 44.000 | 3.51 | 0.00 | 36.15 | 3.51 |
145 | 146 | 4.389374 | AGGCGTGGAAGTATAAATCATGG | 58.611 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
146 | 147 | 5.751680 | CAAGGCGTGGAAGTATAAATCATG | 58.248 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
147 | 148 | 4.275936 | GCAAGGCGTGGAAGTATAAATCAT | 59.724 | 41.667 | 1.91 | 0.00 | 0.00 | 2.45 |
148 | 149 | 3.625764 | GCAAGGCGTGGAAGTATAAATCA | 59.374 | 43.478 | 1.91 | 0.00 | 0.00 | 2.57 |
149 | 150 | 3.625764 | TGCAAGGCGTGGAAGTATAAATC | 59.374 | 43.478 | 1.91 | 0.00 | 0.00 | 2.17 |
150 | 151 | 3.616219 | TGCAAGGCGTGGAAGTATAAAT | 58.384 | 40.909 | 1.91 | 0.00 | 0.00 | 1.40 |
151 | 152 | 3.060736 | TGCAAGGCGTGGAAGTATAAA | 57.939 | 42.857 | 1.91 | 0.00 | 0.00 | 1.40 |
152 | 153 | 2.772077 | TGCAAGGCGTGGAAGTATAA | 57.228 | 45.000 | 1.91 | 0.00 | 0.00 | 0.98 |
153 | 154 | 2.560504 | CATGCAAGGCGTGGAAGTATA | 58.439 | 47.619 | 0.00 | 0.00 | 41.34 | 1.47 |
154 | 155 | 1.382522 | CATGCAAGGCGTGGAAGTAT | 58.617 | 50.000 | 0.00 | 0.00 | 41.34 | 2.12 |
155 | 156 | 1.305219 | GCATGCAAGGCGTGGAAGTA | 61.305 | 55.000 | 14.21 | 0.00 | 44.72 | 2.24 |
156 | 157 | 2.629656 | GCATGCAAGGCGTGGAAGT | 61.630 | 57.895 | 14.21 | 0.00 | 44.72 | 3.01 |
157 | 158 | 2.180017 | GCATGCAAGGCGTGGAAG | 59.820 | 61.111 | 14.21 | 0.00 | 44.72 | 3.46 |
165 | 166 | 1.611977 | CATATCAGGGTGCATGCAAGG | 59.388 | 52.381 | 24.58 | 12.16 | 0.00 | 3.61 |
199 | 200 | 4.271661 | TGCATGAAGACAATATTCAGCCA | 58.728 | 39.130 | 0.00 | 0.00 | 39.86 | 4.75 |
202 | 203 | 6.750501 | CCAAGTTGCATGAAGACAATATTCAG | 59.249 | 38.462 | 0.00 | 0.00 | 39.86 | 3.02 |
245 | 246 | 5.880332 | TCGGGAAAGATCAAGGAGTTAATTG | 59.120 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
249 | 250 | 5.221185 | CGTATCGGGAAAGATCAAGGAGTTA | 60.221 | 44.000 | 0.00 | 0.00 | 32.39 | 2.24 |
252 | 253 | 3.553096 | CCGTATCGGGAAAGATCAAGGAG | 60.553 | 52.174 | 0.00 | 0.00 | 44.15 | 3.69 |
253 | 254 | 2.364324 | CCGTATCGGGAAAGATCAAGGA | 59.636 | 50.000 | 0.00 | 0.00 | 44.15 | 3.36 |
254 | 255 | 2.755650 | CCGTATCGGGAAAGATCAAGG | 58.244 | 52.381 | 0.00 | 0.00 | 44.15 | 3.61 |
267 | 268 | 0.235665 | GCCATGCAACATCCGTATCG | 59.764 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
431 | 435 | 4.600111 | TCAATAATATGGGTGGGGTAGACC | 59.400 | 45.833 | 0.00 | 0.00 | 39.11 | 3.85 |
432 | 436 | 5.836024 | TCAATAATATGGGTGGGGTAGAC | 57.164 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
433 | 437 | 8.709153 | ATTATCAATAATATGGGTGGGGTAGA | 57.291 | 34.615 | 0.00 | 0.00 | 31.54 | 2.59 |
434 | 438 | 9.847224 | GTATTATCAATAATATGGGTGGGGTAG | 57.153 | 37.037 | 5.90 | 0.00 | 37.50 | 3.18 |
435 | 439 | 8.783903 | GGTATTATCAATAATATGGGTGGGGTA | 58.216 | 37.037 | 5.90 | 0.00 | 37.50 | 3.69 |
436 | 440 | 7.467519 | AGGTATTATCAATAATATGGGTGGGGT | 59.532 | 37.037 | 5.90 | 0.00 | 37.50 | 4.95 |
437 | 441 | 7.882755 | AGGTATTATCAATAATATGGGTGGGG | 58.117 | 38.462 | 5.90 | 0.00 | 37.50 | 4.96 |
475 | 479 | 5.123979 | GGGTGCCCGAATATTGATAGAATTC | 59.876 | 44.000 | 0.00 | 0.00 | 0.00 | 2.17 |
476 | 480 | 5.010282 | GGGTGCCCGAATATTGATAGAATT | 58.990 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
477 | 481 | 4.042809 | TGGGTGCCCGAATATTGATAGAAT | 59.957 | 41.667 | 2.44 | 0.00 | 39.42 | 2.40 |
478 | 482 | 3.392947 | TGGGTGCCCGAATATTGATAGAA | 59.607 | 43.478 | 2.44 | 0.00 | 39.42 | 2.10 |
479 | 483 | 2.976185 | TGGGTGCCCGAATATTGATAGA | 59.024 | 45.455 | 2.44 | 0.00 | 39.42 | 1.98 |
480 | 484 | 3.417069 | TGGGTGCCCGAATATTGATAG | 57.583 | 47.619 | 2.44 | 0.00 | 39.42 | 2.08 |
481 | 485 | 5.506730 | TTATGGGTGCCCGAATATTGATA | 57.493 | 39.130 | 2.44 | 0.00 | 39.42 | 2.15 |
482 | 486 | 2.978156 | ATGGGTGCCCGAATATTGAT | 57.022 | 45.000 | 2.44 | 0.00 | 39.42 | 2.57 |
483 | 487 | 3.866703 | TTATGGGTGCCCGAATATTGA | 57.133 | 42.857 | 2.44 | 0.00 | 39.42 | 2.57 |
484 | 488 | 4.927978 | TTTTATGGGTGCCCGAATATTG | 57.072 | 40.909 | 2.44 | 0.00 | 39.42 | 1.90 |
485 | 489 | 7.604657 | TTATTTTTATGGGTGCCCGAATATT | 57.395 | 32.000 | 2.44 | 0.00 | 39.42 | 1.28 |
486 | 490 | 7.604657 | TTTATTTTTATGGGTGCCCGAATAT | 57.395 | 32.000 | 2.44 | 2.05 | 39.42 | 1.28 |
487 | 491 | 7.419711 | TTTTATTTTTATGGGTGCCCGAATA | 57.580 | 32.000 | 2.44 | 0.00 | 39.42 | 1.75 |
488 | 492 | 5.941555 | TTTATTTTTATGGGTGCCCGAAT | 57.058 | 34.783 | 2.44 | 0.00 | 39.42 | 3.34 |
489 | 493 | 5.740290 | TTTTATTTTTATGGGTGCCCGAA | 57.260 | 34.783 | 2.44 | 0.00 | 39.42 | 4.30 |
490 | 494 | 5.740290 | TTTTTATTTTTATGGGTGCCCGA | 57.260 | 34.783 | 2.44 | 0.00 | 39.42 | 5.14 |
491 | 495 | 8.494016 | TTTATTTTTATTTTTATGGGTGCCCG | 57.506 | 30.769 | 2.44 | 0.00 | 39.42 | 6.13 |
527 | 531 | 7.139392 | CGAGAATTGTATCTCCAGAACGATAA | 58.861 | 38.462 | 0.00 | 0.00 | 42.34 | 1.75 |
528 | 532 | 6.294010 | CCGAGAATTGTATCTCCAGAACGATA | 60.294 | 42.308 | 0.00 | 0.00 | 42.34 | 2.92 |
529 | 533 | 5.508153 | CCGAGAATTGTATCTCCAGAACGAT | 60.508 | 44.000 | 0.00 | 0.00 | 42.34 | 3.73 |
530 | 534 | 4.202020 | CCGAGAATTGTATCTCCAGAACGA | 60.202 | 45.833 | 0.00 | 0.00 | 42.34 | 3.85 |
532 | 536 | 4.372656 | CCCGAGAATTGTATCTCCAGAAC | 58.627 | 47.826 | 0.00 | 0.00 | 42.34 | 3.01 |
534 | 538 | 2.365617 | GCCCGAGAATTGTATCTCCAGA | 59.634 | 50.000 | 0.00 | 0.00 | 42.34 | 3.86 |
535 | 539 | 2.548920 | GGCCCGAGAATTGTATCTCCAG | 60.549 | 54.545 | 0.00 | 0.00 | 42.34 | 3.86 |
537 | 541 | 1.694696 | AGGCCCGAGAATTGTATCTCC | 59.305 | 52.381 | 0.00 | 0.00 | 42.34 | 3.71 |
538 | 542 | 3.181465 | TGAAGGCCCGAGAATTGTATCTC | 60.181 | 47.826 | 0.00 | 0.00 | 41.99 | 2.75 |
539 | 543 | 2.771943 | TGAAGGCCCGAGAATTGTATCT | 59.228 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
540 | 544 | 3.134458 | CTGAAGGCCCGAGAATTGTATC | 58.866 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
541 | 545 | 2.158755 | CCTGAAGGCCCGAGAATTGTAT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
542 | 546 | 1.209504 | CCTGAAGGCCCGAGAATTGTA | 59.790 | 52.381 | 0.00 | 0.00 | 0.00 | 2.41 |
543 | 547 | 0.035056 | CCTGAAGGCCCGAGAATTGT | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
544 | 548 | 0.253044 | TCCTGAAGGCCCGAGAATTG | 59.747 | 55.000 | 0.00 | 0.00 | 34.44 | 2.32 |
546 | 550 | 0.325671 | TCTCCTGAAGGCCCGAGAAT | 60.326 | 55.000 | 0.00 | 0.00 | 34.44 | 2.40 |
547 | 551 | 0.325671 | ATCTCCTGAAGGCCCGAGAA | 60.326 | 55.000 | 0.00 | 0.00 | 35.15 | 2.87 |
549 | 553 | 0.676736 | GTATCTCCTGAAGGCCCGAG | 59.323 | 60.000 | 0.00 | 0.00 | 34.44 | 4.63 |
550 | 554 | 0.032515 | TGTATCTCCTGAAGGCCCGA | 60.033 | 55.000 | 0.00 | 0.00 | 34.44 | 5.14 |
551 | 555 | 0.830648 | TTGTATCTCCTGAAGGCCCG | 59.169 | 55.000 | 0.00 | 0.00 | 34.44 | 6.13 |
552 | 556 | 3.217626 | CAATTGTATCTCCTGAAGGCCC | 58.782 | 50.000 | 0.00 | 0.00 | 34.44 | 5.80 |
553 | 557 | 3.879892 | GACAATTGTATCTCCTGAAGGCC | 59.120 | 47.826 | 11.95 | 0.00 | 34.44 | 5.19 |
554 | 558 | 3.557595 | CGACAATTGTATCTCCTGAAGGC | 59.442 | 47.826 | 11.95 | 0.00 | 34.44 | 4.35 |
555 | 559 | 4.759782 | ACGACAATTGTATCTCCTGAAGG | 58.240 | 43.478 | 11.95 | 0.00 | 0.00 | 3.46 |
556 | 560 | 6.035435 | CAGAACGACAATTGTATCTCCTGAAG | 59.965 | 42.308 | 11.95 | 0.07 | 0.00 | 3.02 |
559 | 563 | 4.033358 | GCAGAACGACAATTGTATCTCCTG | 59.967 | 45.833 | 11.95 | 15.01 | 0.00 | 3.86 |
560 | 564 | 4.081420 | AGCAGAACGACAATTGTATCTCCT | 60.081 | 41.667 | 11.95 | 8.42 | 0.00 | 3.69 |
562 | 566 | 4.033358 | CCAGCAGAACGACAATTGTATCTC | 59.967 | 45.833 | 11.95 | 8.00 | 0.00 | 2.75 |
563 | 567 | 3.935203 | CCAGCAGAACGACAATTGTATCT | 59.065 | 43.478 | 11.95 | 12.45 | 0.00 | 1.98 |
564 | 568 | 3.684788 | ACCAGCAGAACGACAATTGTATC | 59.315 | 43.478 | 11.95 | 10.37 | 0.00 | 2.24 |
566 | 570 | 2.805671 | CACCAGCAGAACGACAATTGTA | 59.194 | 45.455 | 11.95 | 0.00 | 0.00 | 2.41 |
567 | 571 | 1.603802 | CACCAGCAGAACGACAATTGT | 59.396 | 47.619 | 11.78 | 11.78 | 0.00 | 2.71 |
568 | 572 | 1.872952 | TCACCAGCAGAACGACAATTG | 59.127 | 47.619 | 3.24 | 3.24 | 0.00 | 2.32 |
570 | 574 | 2.079158 | CATCACCAGCAGAACGACAAT | 58.921 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
573 | 577 | 1.790387 | GCATCACCAGCAGAACGAC | 59.210 | 57.895 | 0.00 | 0.00 | 0.00 | 4.34 |
574 | 578 | 1.737735 | CGCATCACCAGCAGAACGA | 60.738 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
575 | 579 | 2.743752 | CCGCATCACCAGCAGAACG | 61.744 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
576 | 580 | 1.375908 | TCCGCATCACCAGCAGAAC | 60.376 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
577 | 581 | 1.375908 | GTCCGCATCACCAGCAGAA | 60.376 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
578 | 582 | 2.265739 | GTCCGCATCACCAGCAGA | 59.734 | 61.111 | 0.00 | 0.00 | 0.00 | 4.26 |
608 | 612 | 5.413213 | CAGCTACTACCACAGCTATAGTAGG | 59.587 | 48.000 | 22.49 | 10.47 | 46.26 | 3.18 |
627 | 631 | 1.134699 | CGTGCTTGATTCCCTCAGCTA | 60.135 | 52.381 | 0.00 | 0.00 | 34.68 | 3.32 |
629 | 633 | 0.391661 | TCGTGCTTGATTCCCTCAGC | 60.392 | 55.000 | 0.00 | 0.00 | 34.68 | 4.26 |
631 | 635 | 0.976641 | ACTCGTGCTTGATTCCCTCA | 59.023 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
651 | 659 | 4.030452 | GCCCAGACAGTTGCACGC | 62.030 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
759 | 774 | 4.541482 | CATGGATGGCGCGTGTGC | 62.541 | 66.667 | 8.43 | 0.00 | 37.91 | 4.57 |
820 | 1028 | 1.734465 | CGGAGAAGTGATTTGGTCAGC | 59.266 | 52.381 | 0.00 | 0.00 | 37.56 | 4.26 |
840 | 1061 | 0.335019 | AGGGTTGGTAGGGGAAATGC | 59.665 | 55.000 | 0.00 | 0.00 | 0.00 | 3.56 |
870 | 1091 | 5.045797 | GGTGTGGGGAAAGGGATATATACTC | 60.046 | 48.000 | 0.00 | 0.00 | 0.00 | 2.59 |
872 | 1093 | 4.018688 | GGGTGTGGGGAAAGGGATATATAC | 60.019 | 50.000 | 0.00 | 0.00 | 0.00 | 1.47 |
894 | 1186 | 2.098233 | GTGCGGTGTGGTGATACGG | 61.098 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
980 | 1289 | 5.334319 | CCATTGATCTACACGTACGTTACA | 58.666 | 41.667 | 20.23 | 9.62 | 0.00 | 2.41 |
984 | 1293 | 2.793585 | CGCCATTGATCTACACGTACGT | 60.794 | 50.000 | 16.72 | 16.72 | 0.00 | 3.57 |
993 | 1314 | 1.299850 | CGTCGCCGCCATTGATCTA | 60.300 | 57.895 | 0.00 | 0.00 | 0.00 | 1.98 |
1101 | 1432 | 2.487532 | CGGGTAGTCGGCCTGGTAG | 61.488 | 68.421 | 0.00 | 0.00 | 0.00 | 3.18 |
1200 | 1531 | 7.562135 | CAAAGAAGAATGGAATGGAATGGAAT | 58.438 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
1201 | 1532 | 6.574859 | GCAAAGAAGAATGGAATGGAATGGAA | 60.575 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
1202 | 1533 | 5.105228 | GCAAAGAAGAATGGAATGGAATGGA | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1203 | 1534 | 5.114081 | GCAAAGAAGAATGGAATGGAATGG | 58.886 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1204 | 1535 | 5.114081 | GGCAAAGAAGAATGGAATGGAATG | 58.886 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
1205 | 1536 | 4.142093 | CGGCAAAGAAGAATGGAATGGAAT | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1206 | 1537 | 3.193267 | CGGCAAAGAAGAATGGAATGGAA | 59.807 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
1207 | 1538 | 2.754552 | CGGCAAAGAAGAATGGAATGGA | 59.245 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1208 | 1539 | 2.493278 | ACGGCAAAGAAGAATGGAATGG | 59.507 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1209 | 1540 | 3.441572 | AGACGGCAAAGAAGAATGGAATG | 59.558 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
1240 | 1587 | 1.096416 | GTCCATCGTCCGAGAGAAGT | 58.904 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1295 | 1702 | 1.416401 | TCTGGGACTTGTCACCTGAAC | 59.584 | 52.381 | 0.17 | 0.00 | 30.62 | 3.18 |
1485 | 1892 | 1.352352 | ACAAGGTGGGTGATCTTGGAG | 59.648 | 52.381 | 0.00 | 0.00 | 45.92 | 3.86 |
1785 | 2192 | 4.470170 | TCCGCACCGACGATCACG | 62.470 | 66.667 | 0.00 | 0.00 | 45.75 | 4.35 |
1830 | 2237 | 1.376424 | CGCAGACACCAGCTGGAAT | 60.376 | 57.895 | 39.19 | 25.20 | 38.94 | 3.01 |
1990 | 2397 | 2.092753 | AGTTCCAGTCATCGATGCCAAT | 60.093 | 45.455 | 20.81 | 0.44 | 0.00 | 3.16 |
1992 | 2399 | 0.904649 | AGTTCCAGTCATCGATGCCA | 59.095 | 50.000 | 20.81 | 1.10 | 0.00 | 4.92 |
2067 | 2474 | 4.024302 | CGTTCCTTGTTCAGGTTTACCTTC | 60.024 | 45.833 | 0.00 | 0.00 | 46.09 | 3.46 |
2205 | 2612 | 2.190578 | CAGTCCATTCCCTCGCCC | 59.809 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
2331 | 2738 | 9.517609 | AACAGTAGTAGATTATTTCATGACGAC | 57.482 | 33.333 | 0.00 | 0.00 | 0.00 | 4.34 |
2377 | 5433 | 7.819900 | ACAAACCTCATACAACAGAATAGAGTC | 59.180 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
2381 | 5437 | 9.436957 | ACTTACAAACCTCATACAACAGAATAG | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
2448 | 5506 | 4.695455 | ACGATCTCAACAATAAACAGGGTG | 59.305 | 41.667 | 0.00 | 0.00 | 0.00 | 4.61 |
2489 | 5553 | 8.946085 | TGGTTACTTTCAATCATGTAGATCAAC | 58.054 | 33.333 | 0.00 | 0.00 | 35.39 | 3.18 |
2495 | 5559 | 9.702726 | CGTAATTGGTTACTTTCAATCATGTAG | 57.297 | 33.333 | 0.00 | 0.00 | 38.41 | 2.74 |
2525 | 5589 | 6.748333 | TGCTTGATTCTTAGGTTTCATCAG | 57.252 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
2612 | 5676 | 7.110155 | TGGGAATTACTAAACTCATTCACTCC | 58.890 | 38.462 | 0.00 | 0.00 | 31.40 | 3.85 |
2613 | 5677 | 8.561738 | TTGGGAATTACTAAACTCATTCACTC | 57.438 | 34.615 | 0.00 | 0.00 | 31.40 | 3.51 |
2615 | 5679 | 8.561738 | TCTTGGGAATTACTAAACTCATTCAC | 57.438 | 34.615 | 0.00 | 0.00 | 30.84 | 3.18 |
2660 | 5727 | 9.403583 | ACAATTTTATCTTGTCCATATTACCGT | 57.596 | 29.630 | 0.00 | 0.00 | 31.29 | 4.83 |
2673 | 5745 | 7.484471 | GAGTGCTTCGAACAATTTTATCTTG | 57.516 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2719 | 5791 | 3.259374 | TCTGCGAGTCCTCTCTTTGAAAT | 59.741 | 43.478 | 0.00 | 0.00 | 38.45 | 2.17 |
2744 | 5816 | 0.742990 | TGAAATAAGTGGCGCCTCCG | 60.743 | 55.000 | 29.70 | 0.00 | 37.80 | 4.63 |
2746 | 5818 | 2.747446 | TCTTTGAAATAAGTGGCGCCTC | 59.253 | 45.455 | 29.70 | 25.08 | 0.00 | 4.70 |
2749 | 5821 | 3.181506 | CCTCTCTTTGAAATAAGTGGCGC | 60.182 | 47.826 | 0.00 | 0.00 | 0.00 | 6.53 |
2750 | 5822 | 4.253685 | TCCTCTCTTTGAAATAAGTGGCG | 58.746 | 43.478 | 4.57 | 0.00 | 0.00 | 5.69 |
2751 | 5823 | 5.882557 | TCATCCTCTCTTTGAAATAAGTGGC | 59.117 | 40.000 | 4.57 | 0.00 | 0.00 | 5.01 |
2752 | 5824 | 6.036517 | CGTCATCCTCTCTTTGAAATAAGTGG | 59.963 | 42.308 | 3.50 | 3.50 | 0.00 | 4.00 |
2753 | 5825 | 6.036517 | CCGTCATCCTCTCTTTGAAATAAGTG | 59.963 | 42.308 | 0.00 | 0.00 | 0.00 | 3.16 |
2754 | 5826 | 6.109359 | CCGTCATCCTCTCTTTGAAATAAGT | 58.891 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2757 | 5829 | 4.469945 | ACCCGTCATCCTCTCTTTGAAATA | 59.530 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2761 | 5893 | 1.938585 | ACCCGTCATCCTCTCTTTGA | 58.061 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2762 | 5894 | 2.770164 | AACCCGTCATCCTCTCTTTG | 57.230 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2771 | 5903 | 9.019764 | CAAATTAAATGTGAATAACCCGTCATC | 57.980 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
2776 | 5908 | 7.042791 | GCCATCAAATTAAATGTGAATAACCCG | 60.043 | 37.037 | 0.00 | 0.00 | 0.00 | 5.28 |
2777 | 5909 | 7.226523 | GGCCATCAAATTAAATGTGAATAACCC | 59.773 | 37.037 | 0.00 | 0.00 | 0.00 | 4.11 |
2778 | 5910 | 7.768120 | TGGCCATCAAATTAAATGTGAATAACC | 59.232 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
2779 | 5911 | 8.603181 | GTGGCCATCAAATTAAATGTGAATAAC | 58.397 | 33.333 | 9.72 | 0.00 | 0.00 | 1.89 |
2780 | 5912 | 8.316946 | TGTGGCCATCAAATTAAATGTGAATAA | 58.683 | 29.630 | 9.72 | 0.00 | 0.00 | 1.40 |
2781 | 5913 | 7.845037 | TGTGGCCATCAAATTAAATGTGAATA | 58.155 | 30.769 | 9.72 | 0.00 | 0.00 | 1.75 |
2782 | 5914 | 6.709281 | TGTGGCCATCAAATTAAATGTGAAT | 58.291 | 32.000 | 9.72 | 0.00 | 0.00 | 2.57 |
2783 | 5915 | 6.106648 | TGTGGCCATCAAATTAAATGTGAA | 57.893 | 33.333 | 9.72 | 0.00 | 0.00 | 3.18 |
2784 | 5916 | 5.337410 | CCTGTGGCCATCAAATTAAATGTGA | 60.337 | 40.000 | 9.72 | 0.00 | 0.00 | 3.58 |
2785 | 5917 | 4.871557 | CCTGTGGCCATCAAATTAAATGTG | 59.128 | 41.667 | 9.72 | 0.00 | 0.00 | 3.21 |
2787 | 5919 | 3.872771 | GCCTGTGGCCATCAAATTAAATG | 59.127 | 43.478 | 9.72 | 0.00 | 44.06 | 2.32 |
2788 | 5920 | 4.141233 | GCCTGTGGCCATCAAATTAAAT | 57.859 | 40.909 | 9.72 | 0.00 | 44.06 | 1.40 |
2789 | 5921 | 3.608316 | GCCTGTGGCCATCAAATTAAA | 57.392 | 42.857 | 9.72 | 0.00 | 44.06 | 1.52 |
2804 | 5936 | 1.968017 | CGCATCAACCACTGCCTGT | 60.968 | 57.895 | 0.00 | 0.00 | 34.89 | 4.00 |
2806 | 5938 | 1.228245 | AACGCATCAACCACTGCCT | 60.228 | 52.632 | 0.00 | 0.00 | 34.89 | 4.75 |
2807 | 5939 | 1.081242 | CAACGCATCAACCACTGCC | 60.081 | 57.895 | 0.00 | 0.00 | 34.89 | 4.85 |
2808 | 5940 | 1.081242 | CCAACGCATCAACCACTGC | 60.081 | 57.895 | 0.00 | 0.00 | 35.02 | 4.40 |
2810 | 5942 | 1.227999 | CGTCCAACGCATCAACCACT | 61.228 | 55.000 | 0.00 | 0.00 | 33.65 | 4.00 |
2811 | 5943 | 1.206578 | CGTCCAACGCATCAACCAC | 59.793 | 57.895 | 0.00 | 0.00 | 33.65 | 4.16 |
2812 | 5944 | 3.649096 | CGTCCAACGCATCAACCA | 58.351 | 55.556 | 0.00 | 0.00 | 33.65 | 3.67 |
2823 | 5955 | 0.105964 | CCCACACAGAGAACGTCCAA | 59.894 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2825 | 5957 | 1.668151 | GCCCACACAGAGAACGTCC | 60.668 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
2826 | 5958 | 1.668151 | GGCCCACACAGAGAACGTC | 60.668 | 63.158 | 0.00 | 0.00 | 0.00 | 4.34 |
2827 | 5959 | 0.830444 | TAGGCCCACACAGAGAACGT | 60.830 | 55.000 | 0.00 | 0.00 | 0.00 | 3.99 |
2828 | 5960 | 0.108615 | CTAGGCCCACACAGAGAACG | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2829 | 5961 | 0.977395 | ACTAGGCCCACACAGAGAAC | 59.023 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2830 | 5962 | 1.267121 | GACTAGGCCCACACAGAGAA | 58.733 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2831 | 5963 | 0.965866 | CGACTAGGCCCACACAGAGA | 60.966 | 60.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2832 | 5964 | 1.251527 | ACGACTAGGCCCACACAGAG | 61.252 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2833 | 5965 | 0.038599 | TACGACTAGGCCCACACAGA | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2834 | 5966 | 1.112113 | ATACGACTAGGCCCACACAG | 58.888 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2840 | 6049 | 1.535437 | CGTTGTCATACGACTAGGCCC | 60.535 | 57.143 | 0.00 | 0.00 | 43.99 | 5.80 |
2844 | 6053 | 1.404391 | AGGCCGTTGTCATACGACTAG | 59.596 | 52.381 | 0.00 | 0.00 | 43.99 | 2.57 |
2846 | 6055 | 0.606604 | AAGGCCGTTGTCATACGACT | 59.393 | 50.000 | 0.00 | 4.85 | 43.99 | 4.18 |
2877 | 6086 | 1.404047 | GGAAATGAAATGCCACCACGG | 60.404 | 52.381 | 0.00 | 0.00 | 38.11 | 4.94 |
2879 | 6088 | 2.036992 | TGTGGAAATGAAATGCCACCAC | 59.963 | 45.455 | 0.00 | 0.00 | 46.30 | 4.16 |
2882 | 6091 | 4.996122 | TCAAATGTGGAAATGAAATGCCAC | 59.004 | 37.500 | 0.00 | 0.00 | 46.74 | 5.01 |
2892 | 6101 | 8.369424 | TGATGATTGTTCTTCAAATGTGGAAAT | 58.631 | 29.630 | 0.00 | 0.00 | 39.62 | 2.17 |
2895 | 6104 | 6.897706 | TGATGATTGTTCTTCAAATGTGGA | 57.102 | 33.333 | 0.00 | 0.00 | 39.62 | 4.02 |
2906 | 6115 | 9.023962 | TGTTTTAGCCTATTTGATGATTGTTCT | 57.976 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
2910 | 6119 | 8.461222 | TCACTGTTTTAGCCTATTTGATGATTG | 58.539 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
2916 | 6125 | 9.905713 | AATATCTCACTGTTTTAGCCTATTTGA | 57.094 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
2931 | 6226 | 8.696043 | TTTCCATCCCAATAAATATCTCACTG | 57.304 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
2975 | 6270 | 3.374745 | AGTGCGATTGCTTGACAAAAAG | 58.625 | 40.909 | 6.47 | 0.00 | 42.86 | 2.27 |
2976 | 6271 | 3.435105 | AGTGCGATTGCTTGACAAAAA | 57.565 | 38.095 | 6.47 | 0.00 | 42.86 | 1.94 |
2985 | 6280 | 0.801251 | GCTCTCAAAGTGCGATTGCT | 59.199 | 50.000 | 6.47 | 0.00 | 43.34 | 3.91 |
2996 | 6291 | 2.565391 | TGGACGTTGATAGGCTCTCAAA | 59.435 | 45.455 | 15.84 | 0.00 | 34.59 | 2.69 |
3103 | 6439 | 5.516339 | CGCAGACCAATTTTATCCAATCAAC | 59.484 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3128 | 6464 | 3.008813 | ACAAGAGCACAAGAGTGGATGAT | 59.991 | 43.478 | 0.00 | 0.00 | 45.98 | 2.45 |
3138 | 6474 | 3.181513 | CCGATTGATCACAAGAGCACAAG | 60.182 | 47.826 | 0.00 | 0.00 | 40.39 | 3.16 |
3154 | 6490 | 1.202222 | GCACTTCATTCAGGCCGATTG | 60.202 | 52.381 | 0.00 | 5.20 | 0.00 | 2.67 |
3204 | 7090 | 1.340017 | GCAGCATTCCTCTGGTTGGTA | 60.340 | 52.381 | 0.00 | 0.00 | 32.41 | 3.25 |
3214 | 7100 | 2.419667 | GCAAATTTGTGCAGCATTCCT | 58.580 | 42.857 | 19.03 | 0.00 | 44.29 | 3.36 |
3267 | 7161 | 2.295909 | GCCTTCTGTTGCCATTGTACAA | 59.704 | 45.455 | 11.41 | 11.41 | 0.00 | 2.41 |
3275 | 7169 | 2.158682 | TCTGTTTAGCCTTCTGTTGCCA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 4.92 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.