Multiple sequence alignment - TraesCS2B01G048200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G048200 chr2B 100.000 2381 0 0 1 2381 23877105 23879485 0.000000e+00 4397.0
1 TraesCS2B01G048200 chr2B 95.122 41 2 0 243 283 123120512 123120552 5.490000e-07 65.8
2 TraesCS2B01G048200 chr2D 93.513 1711 81 16 69 1758 13227711 13229412 0.000000e+00 2518.0
3 TraesCS2B01G048200 chr2D 85.410 610 66 9 1774 2381 13229467 13230055 1.560000e-171 612.0
4 TraesCS2B01G048200 chr2D 97.333 75 2 0 1 75 13227615 13227689 6.910000e-26 128.0
5 TraesCS2B01G048200 chr2D 90.196 51 5 0 240 290 619479415 619479365 1.530000e-07 67.6
6 TraesCS2B01G048200 chr2D 95.122 41 2 0 243 283 540315178 540315218 5.490000e-07 65.8
7 TraesCS2B01G048200 chr2A 93.895 1425 71 12 350 1767 15269337 15270752 0.000000e+00 2135.0
8 TraesCS2B01G048200 chr2A 82.474 582 66 18 1805 2381 15271112 15271662 5.950000e-131 477.0
9 TraesCS2B01G048200 chr2A 88.581 289 27 4 69 356 15244847 15245130 1.750000e-91 346.0
10 TraesCS2B01G048200 chr2A 93.151 73 4 1 1 73 15244752 15244823 3.240000e-19 106.0
11 TraesCS2B01G048200 chr2A 93.478 46 3 0 237 282 698783227 698783272 4.250000e-08 69.4
12 TraesCS2B01G048200 chr4D 81.526 249 35 10 1150 1391 323354807 323354563 6.720000e-46 195.0
13 TraesCS2B01G048200 chr4A 80.876 251 36 11 1150 1392 148757878 148758124 1.120000e-43 187.0
14 TraesCS2B01G048200 chr4B 81.250 240 35 9 1150 1383 403624653 403624418 4.040000e-43 185.0
15 TraesCS2B01G048200 chr1B 93.617 47 3 0 238 284 654524372 654524326 1.180000e-08 71.3
16 TraesCS2B01G048200 chr7B 97.500 40 1 0 238 277 749504621 749504660 4.250000e-08 69.4
17 TraesCS2B01G048200 chr7B 91.489 47 2 2 247 292 537546058 537546103 1.980000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G048200 chr2B 23877105 23879485 2380 False 4397 4397 100.000000 1 2381 1 chr2B.!!$F1 2380
1 TraesCS2B01G048200 chr2D 13227615 13230055 2440 False 1086 2518 92.085333 1 2381 3 chr2D.!!$F2 2380
2 TraesCS2B01G048200 chr2A 15269337 15271662 2325 False 1306 2135 88.184500 350 2381 2 chr2A.!!$F3 2031

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 159 0.599558 CTCACCAACATGCACCAAGG 59.4 55.0 0.0 0.0 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 2393 0.03601 ACTGGACATGGCGAGGAAAG 60.036 55.0 15.71 0.0 0.0 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 156 2.064434 TTTCTCACCAACATGCACCA 57.936 45.000 0.00 0.00 0.00 4.17
131 159 0.599558 CTCACCAACATGCACCAAGG 59.400 55.000 0.00 0.00 0.00 3.61
145 173 2.356382 CACCAAGGAACGTGTGCTAAAA 59.644 45.455 0.00 0.00 35.66 1.52
148 176 3.066203 CCAAGGAACGTGTGCTAAAAACT 59.934 43.478 0.00 0.00 35.66 2.66
182 210 5.108517 GCAAAATGAAAACCACTCACTTCA 58.891 37.500 0.00 0.00 32.67 3.02
244 273 8.053026 TCTTCTTGGTCTACTTGATAGTGTAC 57.947 38.462 0.00 0.00 35.78 2.90
248 277 7.450634 TCTTGGTCTACTTGATAGTGTACTGTT 59.549 37.037 0.00 0.00 35.78 3.16
277 306 9.584008 AAACACTCTTATATTATAGGACGGAGA 57.416 33.333 0.00 0.00 0.00 3.71
329 366 3.251004 GCTCTTCCCAACGCCATAATTAG 59.749 47.826 0.00 0.00 0.00 1.73
340 377 5.189928 ACGCCATAATTAGTTGGTCATTCA 58.810 37.500 6.91 0.00 35.34 2.57
363 400 9.449719 TTCAAAATTCCACTTAGATAGAAGGTC 57.550 33.333 0.00 0.00 0.00 3.85
411 448 5.598417 AGGCTACCAACTGACTTGAAATTTT 59.402 36.000 0.00 0.00 30.42 1.82
483 532 5.201713 TCTAAGTATCATTCGAGGGCTTG 57.798 43.478 0.00 0.00 0.00 4.01
499 548 2.484770 GGCTTGCCGATACCAGATGTAA 60.485 50.000 0.00 0.00 31.94 2.41
539 588 6.589830 ATCTCAGATATTTTTCGAACCACG 57.410 37.500 0.00 0.00 44.09 4.94
603 652 5.518847 ACATGAACCTCGTATACATTTCGTG 59.481 40.000 16.16 16.16 36.49 4.35
631 680 3.566322 CACGGGTTTTCTCACCAACATAA 59.434 43.478 0.00 0.00 38.79 1.90
633 682 4.830600 ACGGGTTTTCTCACCAACATAAAT 59.169 37.500 0.00 0.00 38.79 1.40
653 702 1.944024 TCCAAGAACGCGTTCACAAAT 59.056 42.857 42.89 25.87 41.84 2.32
658 707 2.478894 AGAACGCGTTCACAAATACAGG 59.521 45.455 42.89 0.00 41.84 4.00
684 733 8.379902 GTTTTTCGTGTCAAAATGAAAATCACT 58.620 29.630 5.44 0.00 41.99 3.41
728 780 6.522054 TCGTGGACAAGTAGAAAAGATCTTT 58.478 36.000 15.11 15.11 39.71 2.52
770 822 5.751990 GCTTGCCTGAAAAATATCTCCAATG 59.248 40.000 0.00 0.00 0.00 2.82
808 860 1.079127 AGAACGATTGGCCCAGACG 60.079 57.895 0.00 9.45 0.00 4.18
844 896 1.165270 CACGTAAAAGCTTCCCCCTG 58.835 55.000 0.00 0.00 0.00 4.45
859 911 2.354539 CTGCCAAACGCCCAAACG 60.355 61.111 0.00 0.00 36.24 3.60
902 954 2.361737 GCTTCCCTCCCCAAGCAC 60.362 66.667 0.00 0.00 43.87 4.40
1458 1510 0.253044 CTCATGGGAGCCCGAGAAAA 59.747 55.000 0.29 0.00 39.42 2.29
1462 1514 0.545787 TGGGAGCCCGAGAAAACCTA 60.546 55.000 0.29 0.00 39.42 3.08
1624 1676 1.400737 GGTATGGTGTAGAGGCGAGT 58.599 55.000 0.00 0.00 0.00 4.18
1633 1685 1.025113 TAGAGGCGAGTGTCTGGTCG 61.025 60.000 0.00 0.00 39.25 4.79
1648 1700 4.758165 GTCTGGTCGTCCTTTTCCATTAAA 59.242 41.667 0.00 0.00 34.23 1.52
1704 1757 5.508200 TTTTAGCACTTCCAATTGAACGT 57.492 34.783 7.12 0.00 0.00 3.99
1717 1770 5.465056 CCAATTGAACGTTGTTTTAGCCATT 59.535 36.000 5.00 0.00 0.00 3.16
1758 1811 5.586243 GTCTAAAAGCAATCTGATAGCCACA 59.414 40.000 0.00 0.00 0.00 4.17
1761 1814 1.133976 AGCAATCTGATAGCCACACCC 60.134 52.381 0.00 0.00 0.00 4.61
1767 1820 0.535335 TGATAGCCACACCCGACTTC 59.465 55.000 0.00 0.00 0.00 3.01
1770 1823 0.968901 TAGCCACACCCGACTTCGAT 60.969 55.000 0.00 0.00 43.02 3.59
1773 1826 1.472728 GCCACACCCGACTTCGATATT 60.473 52.381 0.00 0.00 43.02 1.28
1774 1827 2.470821 CCACACCCGACTTCGATATTC 58.529 52.381 0.00 0.00 43.02 1.75
1775 1828 2.470821 CACACCCGACTTCGATATTCC 58.529 52.381 0.00 0.00 43.02 3.01
1782 1874 3.057456 CCGACTTCGATATTCCTCCGAAT 60.057 47.826 0.00 0.00 40.78 3.34
1785 1877 5.061920 ACTTCGATATTCCTCCGAATAGC 57.938 43.478 0.00 0.00 42.76 2.97
1810 2185 2.032681 GAACTCGGCAGCCAACCT 59.967 61.111 13.30 0.00 0.00 3.50
1818 2193 3.685435 CAGCCAACCTGCGGATTT 58.315 55.556 0.00 0.00 34.21 2.17
1820 2195 2.125952 GCCAACCTGCGGATTTGC 60.126 61.111 0.00 0.00 0.00 3.68
1821 2196 2.929903 GCCAACCTGCGGATTTGCA 61.930 57.895 0.00 0.00 43.95 4.08
1822 2197 1.664873 CCAACCTGCGGATTTGCAA 59.335 52.632 0.00 0.00 45.74 4.08
1823 2198 0.388907 CCAACCTGCGGATTTGCAAG 60.389 55.000 0.00 0.00 45.74 4.01
1824 2199 0.314935 CAACCTGCGGATTTGCAAGT 59.685 50.000 0.00 0.00 45.74 3.16
1847 2226 0.600255 CGACGAACTGGCTTGAGGTT 60.600 55.000 0.00 0.00 0.00 3.50
1852 2231 1.073284 GAACTGGCTTGAGGTTACCCA 59.927 52.381 0.00 0.00 0.00 4.51
1929 2308 1.134580 CCACGACGAGGGAGTCTACTA 60.135 57.143 0.00 0.00 38.90 1.82
1979 2358 2.210013 TGCCGAGCCTCTGTCTTGT 61.210 57.895 0.00 0.00 0.00 3.16
1990 2369 4.778579 CCTCTGTCTTGTGGAATGATGAT 58.221 43.478 0.00 0.00 0.00 2.45
1991 2370 4.575236 CCTCTGTCTTGTGGAATGATGATG 59.425 45.833 0.00 0.00 0.00 3.07
1992 2371 5.425196 TCTGTCTTGTGGAATGATGATGA 57.575 39.130 0.00 0.00 0.00 2.92
1993 2372 5.807909 TCTGTCTTGTGGAATGATGATGAA 58.192 37.500 0.00 0.00 0.00 2.57
2009 2388 3.909086 GAAAGGCTCTGGGCAGCGT 62.909 63.158 0.21 0.00 44.01 5.07
2014 2393 2.125512 CTCTGGGCAGCGTGGTAC 60.126 66.667 0.00 0.00 0.00 3.34
2031 2410 1.066430 GTACTTTCCTCGCCATGTCCA 60.066 52.381 0.00 0.00 0.00 4.02
2032 2411 0.036010 ACTTTCCTCGCCATGTCCAG 60.036 55.000 0.00 0.00 0.00 3.86
2033 2412 0.036010 CTTTCCTCGCCATGTCCAGT 60.036 55.000 0.00 0.00 0.00 4.00
2034 2413 0.321564 TTTCCTCGCCATGTCCAGTG 60.322 55.000 0.00 0.00 0.00 3.66
2035 2414 2.124983 CCTCGCCATGTCCAGTGG 60.125 66.667 1.40 1.40 39.80 4.00
2036 2415 2.124983 CTCGCCATGTCCAGTGGG 60.125 66.667 9.92 0.00 37.22 4.61
2037 2416 4.408821 TCGCCATGTCCAGTGGGC 62.409 66.667 6.88 6.88 42.98 5.36
2038 2417 4.415150 CGCCATGTCCAGTGGGCT 62.415 66.667 16.31 0.00 44.23 5.19
2039 2418 2.753043 GCCATGTCCAGTGGGCTG 60.753 66.667 16.31 10.49 43.09 4.85
2048 2427 2.183409 CAGTGGGCTGGTGTAATGC 58.817 57.895 0.00 0.00 39.01 3.56
2061 2440 3.020237 TAATGCGCGGGCTGGTGTA 62.020 57.895 25.62 4.00 40.82 2.90
2062 2441 2.523453 TAATGCGCGGGCTGGTGTAA 62.523 55.000 25.62 3.18 40.82 2.41
2081 2460 0.624500 ATGCCTCCATACCCACCACT 60.625 55.000 0.00 0.00 0.00 4.00
2091 2473 4.767255 CCACCACTGCCTCGGAGC 62.767 72.222 0.00 0.00 0.00 4.70
2094 2476 3.699894 CCACTGCCTCGGAGCTGT 61.700 66.667 0.00 3.18 44.65 4.40
2096 2478 2.601666 ACTGCCTCGGAGCTGTCA 60.602 61.111 0.00 0.00 40.45 3.58
2142 2524 1.067821 CCAAGCTGACGTAGGAGGATC 59.932 57.143 0.00 0.00 0.00 3.36
2157 2539 1.232216 GATCCCTCCCCCACTACGA 59.768 63.158 0.00 0.00 0.00 3.43
2270 2652 1.337823 CGAGGTTCCAACAATCGAGGT 60.338 52.381 9.51 0.00 40.12 3.85
2281 2663 1.747355 CAATCGAGGTAGGGTGTACGT 59.253 52.381 0.00 0.00 0.00 3.57
2323 2706 3.950794 GAGAACACGGGCGCCATCA 62.951 63.158 30.85 0.00 0.00 3.07
2331 2714 2.106938 GGCGCCATCATCGACTCA 59.893 61.111 24.80 0.00 31.07 3.41
2360 2743 4.816385 CGTCATATATGCTGGTGAGGTTTT 59.184 41.667 7.92 0.00 0.00 2.43
2374 2757 3.244561 TGAGGTTTTTGCTCGATTCCTCT 60.245 43.478 0.00 0.00 40.14 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.857037 GCGAATTGGATGTGGTCTAAAAAC 59.143 41.667 0.00 0.00 30.60 2.43
99 127 3.066064 TGTTGGTGAGAAATTCCGTGTTG 59.934 43.478 0.00 0.00 0.00 3.33
116 144 0.039256 CGTTCCTTGGTGCATGTTGG 60.039 55.000 0.00 0.00 0.00 3.77
128 156 3.692593 ACAGTTTTTAGCACACGTTCCTT 59.307 39.130 0.00 0.00 0.00 3.36
131 159 5.220135 CCAAAACAGTTTTTAGCACACGTTC 60.220 40.000 8.65 0.00 32.90 3.95
182 210 1.838112 TTTCGGCTTGGCAAGATGAT 58.162 45.000 30.45 0.00 0.00 2.45
231 260 9.609346 AGTGTTTTTAACAGTACACTATCAAGT 57.391 29.630 4.51 0.00 46.72 3.16
255 284 8.828751 ACTCTCTCCGTCCTATAATATAAGAGT 58.171 37.037 0.00 0.00 35.12 3.24
268 297 5.130809 ACTTACTACATACTCTCTCCGTCCT 59.869 44.000 0.00 0.00 0.00 3.85
276 305 6.238429 CCCGTCTCAACTTACTACATACTCTC 60.238 46.154 0.00 0.00 0.00 3.20
277 306 5.589452 CCCGTCTCAACTTACTACATACTCT 59.411 44.000 0.00 0.00 0.00 3.24
284 313 3.087781 AGGACCCGTCTCAACTTACTAC 58.912 50.000 0.00 0.00 0.00 2.73
285 314 3.446442 AGGACCCGTCTCAACTTACTA 57.554 47.619 0.00 0.00 0.00 1.82
286 315 2.305858 AGGACCCGTCTCAACTTACT 57.694 50.000 0.00 0.00 0.00 2.24
329 366 7.657336 TCTAAGTGGAATTTTGAATGACCAAC 58.343 34.615 0.00 0.00 0.00 3.77
340 377 9.674068 GAAGACCTTCTATCTAAGTGGAATTTT 57.326 33.333 2.69 0.00 36.69 1.82
363 400 0.239347 CCAAGCGAGTGCCAAAGAAG 59.761 55.000 0.00 0.00 44.31 2.85
411 448 2.615391 TGTAGGACCATGTCACTGGAA 58.385 47.619 7.93 0.00 39.73 3.53
483 532 4.792521 ATCTCTTACATCTGGTATCGGC 57.207 45.455 0.00 0.00 0.00 5.54
513 562 8.765219 CGTGGTTCGAAAAATATCTGAGATATT 58.235 33.333 19.28 19.28 42.86 1.28
532 581 0.802494 ATGCGAATTGGACGTGGTTC 59.198 50.000 0.00 0.00 0.00 3.62
539 588 4.403453 GTTTGTACAGATGCGAATTGGAC 58.597 43.478 0.00 0.00 0.00 4.02
603 652 1.332686 GTGAGAAAACCCGTGTTGGAC 59.667 52.381 0.00 0.00 42.00 4.02
631 680 1.588674 TGTGAACGCGTTCTTGGATT 58.411 45.000 41.46 14.48 40.14 3.01
633 682 1.370609 TTTGTGAACGCGTTCTTGGA 58.629 45.000 41.46 25.56 40.14 3.53
653 702 6.438259 TCATTTTGACACGAAAAACCTGTA 57.562 33.333 0.00 0.00 29.78 2.74
658 707 8.379902 AGTGATTTTCATTTTGACACGAAAAAC 58.620 29.630 0.00 0.00 39.87 2.43
684 733 0.473694 TTGGCAGGAGGAGGAAGTGA 60.474 55.000 0.00 0.00 0.00 3.41
728 780 2.203788 AACTGGAGCGTGGGAGGA 60.204 61.111 0.00 0.00 0.00 3.71
770 822 2.202324 GCCACGTCGTCTCGTCTC 60.202 66.667 0.00 0.00 42.27 3.36
808 860 1.084289 GTGCACCCGTTTCCTATCAC 58.916 55.000 5.22 0.00 0.00 3.06
844 896 2.414840 ATCACGTTTGGGCGTTTGGC 62.415 55.000 0.00 0.00 43.83 4.52
859 911 2.000447 GGTGCACTCGTTTCCTATCAC 59.000 52.381 17.98 0.00 0.00 3.06
902 954 6.039382 GGTTTGTATTTATAGCTCTGGTTGGG 59.961 42.308 0.00 0.00 0.00 4.12
1458 1510 4.205587 CGGTAGGTTGAGACATAGTAGGT 58.794 47.826 0.00 0.00 0.00 3.08
1462 1514 5.259632 AGTAACGGTAGGTTGAGACATAGT 58.740 41.667 0.00 0.00 39.75 2.12
1624 1676 1.124780 TGGAAAAGGACGACCAGACA 58.875 50.000 6.71 0.00 38.94 3.41
1665 1718 7.232534 AGTGCTAAAATTTGGATGTCAGGTTTA 59.767 33.333 0.00 0.00 0.00 2.01
1704 1757 2.822561 TGCGATCCAATGGCTAAAACAA 59.177 40.909 0.00 0.00 34.85 2.83
1734 1787 5.586243 TGTGGCTATCAGATTGCTTTTAGAC 59.414 40.000 15.30 0.00 0.00 2.59
1758 1811 1.962100 GGAGGAATATCGAAGTCGGGT 59.038 52.381 0.11 0.00 40.29 5.28
1761 1814 3.620929 TTCGGAGGAATATCGAAGTCG 57.379 47.619 0.00 0.00 37.88 4.18
1767 1820 5.470368 TGAAAGCTATTCGGAGGAATATCG 58.530 41.667 0.00 0.00 42.61 2.92
1770 1823 5.362717 TCACTGAAAGCTATTCGGAGGAATA 59.637 40.000 18.45 0.00 39.89 1.75
1773 1826 3.096852 TCACTGAAAGCTATTCGGAGGA 58.903 45.455 18.45 13.71 37.60 3.71
1774 1827 3.526931 TCACTGAAAGCTATTCGGAGG 57.473 47.619 18.45 12.30 37.60 4.30
1775 1828 4.499183 AGTTCACTGAAAGCTATTCGGAG 58.501 43.478 18.45 13.10 37.60 4.63
1782 1874 1.343142 TGCCGAGTTCACTGAAAGCTA 59.657 47.619 0.00 0.00 37.60 3.32
1785 1877 0.514691 GCTGCCGAGTTCACTGAAAG 59.485 55.000 0.00 0.00 42.29 2.62
1810 2185 0.516877 CGAGAACTTGCAAATCCGCA 59.483 50.000 0.00 0.00 41.03 5.69
1824 2199 0.671796 TCAAGCCAGTTCGTCGAGAA 59.328 50.000 0.00 0.00 36.31 2.87
1847 2226 1.740585 CAAATGGCGAATTCGTGGGTA 59.259 47.619 27.24 11.03 42.22 3.69
1852 2231 0.881118 AGCACAAATGGCGAATTCGT 59.119 45.000 27.24 6.67 42.22 3.85
1910 2289 2.306341 TAGTAGACTCCCTCGTCGTG 57.694 55.000 0.00 0.00 38.90 4.35
1911 2290 2.836262 CATAGTAGACTCCCTCGTCGT 58.164 52.381 0.00 0.00 38.90 4.34
1921 2300 0.465824 AGGACGCCGCATAGTAGACT 60.466 55.000 0.00 0.00 0.00 3.24
1966 2345 1.980765 TCATTCCACAAGACAGAGGCT 59.019 47.619 0.00 0.00 0.00 4.58
1967 2346 2.479566 TCATTCCACAAGACAGAGGC 57.520 50.000 0.00 0.00 0.00 4.70
1979 2358 4.204799 CAGAGCCTTTCATCATCATTCCA 58.795 43.478 0.00 0.00 0.00 3.53
1990 2369 2.034687 GCTGCCCAGAGCCTTTCA 59.965 61.111 0.00 0.00 42.71 2.69
1991 2370 3.130160 CGCTGCCCAGAGCCTTTC 61.130 66.667 0.00 0.00 42.71 2.62
1992 2371 3.958860 ACGCTGCCCAGAGCCTTT 61.959 61.111 0.00 0.00 42.71 3.11
1993 2372 4.711949 CACGCTGCCCAGAGCCTT 62.712 66.667 0.00 0.00 42.71 4.35
2009 2388 0.981183 ACATGGCGAGGAAAGTACCA 59.019 50.000 0.00 0.00 34.28 3.25
2012 2391 1.207089 CTGGACATGGCGAGGAAAGTA 59.793 52.381 1.90 0.00 0.00 2.24
2014 2393 0.036010 ACTGGACATGGCGAGGAAAG 60.036 55.000 15.71 0.00 0.00 2.62
2031 2410 1.377202 CGCATTACACCAGCCCACT 60.377 57.895 0.00 0.00 0.00 4.00
2032 2411 3.051392 GCGCATTACACCAGCCCAC 62.051 63.158 0.30 0.00 0.00 4.61
2033 2412 2.749839 GCGCATTACACCAGCCCA 60.750 61.111 0.30 0.00 0.00 5.36
2034 2413 3.876198 CGCGCATTACACCAGCCC 61.876 66.667 8.75 0.00 0.00 5.19
2035 2414 3.876198 CCGCGCATTACACCAGCC 61.876 66.667 8.75 0.00 0.00 4.85
2036 2415 3.876198 CCCGCGCATTACACCAGC 61.876 66.667 8.75 0.00 0.00 4.85
2037 2416 3.876198 GCCCGCGCATTACACCAG 61.876 66.667 8.75 0.00 34.03 4.00
2038 2417 4.402528 AGCCCGCGCATTACACCA 62.403 61.111 8.75 0.00 37.52 4.17
2039 2418 3.876198 CAGCCCGCGCATTACACC 61.876 66.667 8.75 0.00 37.52 4.16
2040 2419 3.876198 CCAGCCCGCGCATTACAC 61.876 66.667 8.75 0.00 37.52 2.90
2041 2420 4.402528 ACCAGCCCGCGCATTACA 62.403 61.111 8.75 0.00 37.52 2.41
2042 2421 3.876198 CACCAGCCCGCGCATTAC 61.876 66.667 8.75 0.00 37.52 1.89
2043 2422 2.523453 TTACACCAGCCCGCGCATTA 62.523 55.000 8.75 0.00 37.52 1.90
2044 2423 3.910914 TTACACCAGCCCGCGCATT 62.911 57.895 8.75 0.00 37.52 3.56
2045 2424 3.697439 ATTACACCAGCCCGCGCAT 62.697 57.895 8.75 0.00 37.52 4.73
2046 2425 4.402528 ATTACACCAGCCCGCGCA 62.403 61.111 8.75 0.00 37.52 6.09
2047 2426 3.876198 CATTACACCAGCCCGCGC 61.876 66.667 0.00 0.00 0.00 6.86
2048 2427 3.876198 GCATTACACCAGCCCGCG 61.876 66.667 0.00 0.00 0.00 6.46
2061 2440 0.258774 GTGGTGGGTATGGAGGCATT 59.741 55.000 0.00 0.00 0.00 3.56
2062 2441 0.624500 AGTGGTGGGTATGGAGGCAT 60.625 55.000 0.00 0.00 0.00 4.40
2081 2460 3.385384 CCTGACAGCTCCGAGGCA 61.385 66.667 0.00 0.00 34.17 4.75
2120 2502 1.153549 CTCCTACGTCAGCTTGGGC 60.154 63.158 0.00 0.00 39.06 5.36
2142 2524 0.032813 TTAGTCGTAGTGGGGGAGGG 60.033 60.000 0.00 0.00 0.00 4.30
2157 2539 1.065709 CCATGGTGCTTACCCGTTAGT 60.066 52.381 2.57 0.00 0.00 2.24
2167 2549 1.565390 TAGCAGAGGCCATGGTGCTT 61.565 55.000 26.98 14.50 43.80 3.91
2176 2558 0.394565 CTACCACCATAGCAGAGGCC 59.605 60.000 0.00 0.00 42.56 5.19
2222 2604 0.182775 AAAGACTTGGCCTTCACGGT 59.817 50.000 3.32 0.00 34.25 4.83
2270 2652 1.064463 CCTAGGTCCACGTACACCCTA 60.064 57.143 10.76 6.82 32.45 3.53
2281 2663 1.043116 CGGCTCATGTCCTAGGTCCA 61.043 60.000 9.08 7.51 0.00 4.02
2331 2714 2.885266 ACCAGCATATATGACGACGTCT 59.115 45.455 26.86 15.48 33.15 4.18
2360 2743 1.500474 ATGGGAGAGGAATCGAGCAA 58.500 50.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.