Multiple sequence alignment - TraesCS2B01G047800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G047800 chr2B 100.000 5679 0 0 1 5679 23648078 23653756 0.000000e+00 10488.0
1 TraesCS2B01G047800 chr2B 83.003 2724 442 19 1440 4154 46890847 46893558 0.000000e+00 2446.0
2 TraesCS2B01G047800 chr2B 82.685 2726 454 16 1440 4158 47154982 47157696 0.000000e+00 2403.0
3 TraesCS2B01G047800 chr2B 97.030 404 12 0 5276 5679 129094252 129094655 0.000000e+00 680.0
4 TraesCS2B01G047800 chr2B 96.835 158 5 0 1 158 564879865 564879708 1.210000e-66 265.0
5 TraesCS2B01G047800 chr2B 93.976 166 9 1 1 165 91767570 91767405 3.400000e-62 250.0
6 TraesCS2B01G047800 chr2D 96.409 4456 156 3 544 4999 12903703 12908154 0.000000e+00 7339.0
7 TraesCS2B01G047800 chr2D 91.257 183 7 6 226 403 12903529 12903707 2.040000e-59 241.0
8 TraesCS2B01G047800 chr6B 94.894 705 12 5 4999 5679 619063664 619064368 0.000000e+00 1081.0
9 TraesCS2B01G047800 chr6B 98.201 278 5 0 4999 5276 58116946 58116669 2.380000e-133 486.0
10 TraesCS2B01G047800 chr6B 97.849 279 5 1 4992 5270 695707765 695708042 1.110000e-131 481.0
11 TraesCS2B01G047800 chr6B 95.541 157 7 0 1 157 90026815 90026971 9.450000e-63 252.0
12 TraesCS2B01G047800 chr6B 94.268 157 9 0 1 157 194422584 194422740 2.040000e-59 241.0
13 TraesCS2B01G047800 chr6B 91.083 157 14 0 1 157 59930383 59930539 4.460000e-51 213.0
14 TraesCS2B01G047800 chr1B 91.268 710 28 9 5000 5679 564352068 564351363 0.000000e+00 937.0
15 TraesCS2B01G047800 chr1B 98.195 277 5 0 5000 5276 22744060 22743784 8.550000e-133 484.0
16 TraesCS2B01G047800 chr1B 96.835 158 5 0 1 158 629811956 629812113 1.210000e-66 265.0
17 TraesCS2B01G047800 chr1B 90.385 156 14 1 5 159 48090714 48090559 2.680000e-48 204.0
18 TraesCS2B01G047800 chr5A 89.700 699 57 8 4995 5679 503651700 503651003 0.000000e+00 878.0
19 TraesCS2B01G047800 chr7B 98.762 404 4 1 5276 5679 540125236 540125638 0.000000e+00 717.0
20 TraesCS2B01G047800 chr7B 98.195 277 5 0 5000 5276 630106565 630106841 8.550000e-133 484.0
21 TraesCS2B01G047800 chr7B 98.195 277 5 0 5000 5276 689140700 689140976 8.550000e-133 484.0
22 TraesCS2B01G047800 chr7B 95.732 164 6 1 1 164 109671022 109670860 4.360000e-66 263.0
23 TraesCS2B01G047800 chr7B 96.203 158 6 0 1 158 510600478 510600635 5.640000e-65 259.0
24 TraesCS2B01G047800 chr7B 93.038 158 11 0 1 158 664840377 664840534 1.230000e-56 231.0
25 TraesCS2B01G047800 chr5B 98.515 404 6 0 5276 5679 674917134 674916731 0.000000e+00 713.0
26 TraesCS2B01G047800 chr5B 97.772 404 7 2 5276 5679 708160462 708160863 0.000000e+00 695.0
27 TraesCS2B01G047800 chr5B 98.909 275 2 1 4997 5270 665074934 665075208 1.840000e-134 490.0
28 TraesCS2B01G047800 chr5B 98.195 277 5 0 5000 5276 581251463 581251739 8.550000e-133 484.0
29 TraesCS2B01G047800 chr5B 95.062 162 7 1 1 162 58691525 58691685 2.630000e-63 254.0
30 TraesCS2B01G047800 chr5B 94.904 157 8 0 1 157 677146843 677146999 4.390000e-61 246.0
31 TraesCS2B01G047800 chr4B 97.277 404 11 0 5276 5679 445668525 445668928 0.000000e+00 686.0
32 TraesCS2B01G047800 chr4B 98.917 277 3 0 5000 5276 654351153 654351429 3.950000e-136 496.0
33 TraesCS2B01G047800 chr4B 94.340 159 7 2 1 158 307583701 307583544 5.680000e-60 243.0
34 TraesCS2B01G047800 chr4B 90.566 159 15 0 1 159 342109680 342109838 1.600000e-50 211.0
35 TraesCS2B01G047800 chr4B 95.833 120 5 0 1 120 543394884 543394765 1.610000e-45 195.0
36 TraesCS2B01G047800 chr4B 85.333 75 11 0 93 167 257860505 257860579 1.700000e-10 78.7
37 TraesCS2B01G047800 chr4B 85.333 75 11 0 93 167 257865209 257865283 1.700000e-10 78.7
38 TraesCS2B01G047800 chr4B 82.667 75 10 3 90 163 522293508 522293580 4.750000e-06 63.9
39 TraesCS2B01G047800 chr4B 100.000 29 0 0 70 98 543394710 543394682 3.000000e-03 54.7
40 TraesCS2B01G047800 chr7A 97.277 404 10 1 5276 5679 624494472 624494070 0.000000e+00 684.0
41 TraesCS2B01G047800 chr7A 73.698 384 89 12 3010 3387 25924296 25923919 7.670000e-29 139.0
42 TraesCS2B01G047800 chr4A 83.807 352 51 5 4999 5350 741620480 741620135 4.240000e-86 329.0
43 TraesCS2B01G047800 chr3B 95.570 158 7 0 1 158 29893407 29893250 2.630000e-63 254.0
44 TraesCS2B01G047800 chr2A 70.971 1061 254 48 2999 4032 764310865 764311898 2.680000e-48 204.0
45 TraesCS2B01G047800 chr6A 82.955 88 11 4 73 158 596336674 596336589 6.100000e-10 76.8
46 TraesCS2B01G047800 chr6A 89.583 48 2 3 85 130 57694847 57694893 2.210000e-04 58.4
47 TraesCS2B01G047800 chr1A 83.146 89 9 5 73 157 394604012 394604098 6.100000e-10 76.8
48 TraesCS2B01G047800 chr1A 83.117 77 9 4 89 163 10437016 10436942 3.670000e-07 67.6
49 TraesCS2B01G047800 chr1A 82.667 75 12 1 85 158 585071986 585072060 1.320000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G047800 chr2B 23648078 23653756 5678 False 10488 10488 100.000 1 5679 1 chr2B.!!$F1 5678
1 TraesCS2B01G047800 chr2B 46890847 46893558 2711 False 2446 2446 83.003 1440 4154 1 chr2B.!!$F2 2714
2 TraesCS2B01G047800 chr2B 47154982 47157696 2714 False 2403 2403 82.685 1440 4158 1 chr2B.!!$F3 2718
3 TraesCS2B01G047800 chr2D 12903529 12908154 4625 False 3790 7339 93.833 226 4999 2 chr2D.!!$F1 4773
4 TraesCS2B01G047800 chr6B 619063664 619064368 704 False 1081 1081 94.894 4999 5679 1 chr6B.!!$F4 680
5 TraesCS2B01G047800 chr1B 564351363 564352068 705 True 937 937 91.268 5000 5679 1 chr1B.!!$R3 679
6 TraesCS2B01G047800 chr5A 503651003 503651700 697 True 878 878 89.700 4995 5679 1 chr5A.!!$R1 684
7 TraesCS2B01G047800 chr2A 764310865 764311898 1033 False 204 204 70.971 2999 4032 1 chr2A.!!$F1 1033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.106918 TTGTGAGCCGTTTGGGAACT 60.107 50.000 0.0 0.0 38.47 3.01 F
1269 1274 0.036164 GTGGGGTGTCATGCAGTACA 59.964 55.000 0.0 0.0 0.00 2.90 F
1363 1368 0.317479 AGGACTTCGTTTCCTCCGTG 59.683 55.000 0.0 0.0 39.47 4.94 F
1776 1781 0.811281 GCATTCCTTCGTCTTTGGGG 59.189 55.000 0.0 0.0 0.00 4.96 F
2073 2078 1.263217 CCGACACTGGGAAACTTTTCG 59.737 52.381 0.0 0.0 38.06 3.46 F
3625 3630 0.850100 TGGCTCAGGGAGTTTTGGAA 59.150 50.000 0.0 0.0 31.39 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 1757 0.036732 AAGACGAAGGAATGCTGCCA 59.963 50.000 0.00 0.0 0.00 4.92 R
2490 2495 0.987294 AGGCTGGTACTGAGCACAAT 59.013 50.000 16.16 0.9 38.27 2.71 R
2683 2688 1.900486 CCCTGAGAGTAAGTTTCCCGT 59.100 52.381 0.00 0.0 0.00 5.28 R
2847 2852 2.100916 TGCTAAGCTCGAAGGTATGGAC 59.899 50.000 0.00 0.0 0.00 4.02 R
3939 3947 0.249657 GGAGATAGTCCAAGGCTGCG 60.250 60.000 0.00 0.0 46.10 5.18 R
4712 4720 0.039035 GGGCATAACACACCTTGGGA 59.961 55.000 0.00 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.050477 CGGCTGTGGCTTTTACTTTG 57.950 50.000 0.00 0.00 38.73 2.77
20 21 1.783284 GGCTGTGGCTTTTACTTTGC 58.217 50.000 0.00 0.00 38.73 3.68
21 22 1.341209 GGCTGTGGCTTTTACTTTGCT 59.659 47.619 0.00 0.00 38.73 3.91
22 23 2.397549 GCTGTGGCTTTTACTTTGCTG 58.602 47.619 0.00 0.00 35.22 4.41
23 24 2.397549 CTGTGGCTTTTACTTTGCTGC 58.602 47.619 0.00 0.00 0.00 5.25
24 25 2.031120 TGTGGCTTTTACTTTGCTGCT 58.969 42.857 0.00 0.00 0.00 4.24
25 26 2.034558 TGTGGCTTTTACTTTGCTGCTC 59.965 45.455 0.00 0.00 0.00 4.26
26 27 2.294512 GTGGCTTTTACTTTGCTGCTCT 59.705 45.455 0.00 0.00 0.00 4.09
27 28 2.958355 TGGCTTTTACTTTGCTGCTCTT 59.042 40.909 0.00 0.00 0.00 2.85
28 29 3.384467 TGGCTTTTACTTTGCTGCTCTTT 59.616 39.130 0.00 0.00 0.00 2.52
29 30 3.737774 GGCTTTTACTTTGCTGCTCTTTG 59.262 43.478 0.00 0.00 0.00 2.77
30 31 4.363138 GCTTTTACTTTGCTGCTCTTTGT 58.637 39.130 0.00 0.00 0.00 2.83
31 32 4.207841 GCTTTTACTTTGCTGCTCTTTGTG 59.792 41.667 0.00 0.00 0.00 3.33
32 33 5.574891 TTTTACTTTGCTGCTCTTTGTGA 57.425 34.783 0.00 0.00 0.00 3.58
33 34 4.818534 TTACTTTGCTGCTCTTTGTGAG 57.181 40.909 0.00 0.00 45.33 3.51
42 43 0.593128 CTCTTTGTGAGCCGTTTGGG 59.407 55.000 0.00 0.00 35.84 4.12
43 44 0.181587 TCTTTGTGAGCCGTTTGGGA 59.818 50.000 0.00 0.00 38.47 4.37
44 45 1.028905 CTTTGTGAGCCGTTTGGGAA 58.971 50.000 0.00 0.00 38.47 3.97
45 46 0.741915 TTTGTGAGCCGTTTGGGAAC 59.258 50.000 0.00 0.00 38.47 3.62
46 47 0.106918 TTGTGAGCCGTTTGGGAACT 60.107 50.000 0.00 0.00 38.47 3.01
47 48 0.759959 TGTGAGCCGTTTGGGAACTA 59.240 50.000 0.00 0.00 38.47 2.24
48 49 1.349688 TGTGAGCCGTTTGGGAACTAT 59.650 47.619 0.00 0.00 38.47 2.12
49 50 2.224670 TGTGAGCCGTTTGGGAACTATT 60.225 45.455 0.00 0.00 38.47 1.73
50 51 2.161609 GTGAGCCGTTTGGGAACTATTG 59.838 50.000 0.00 0.00 38.47 1.90
51 52 2.224670 TGAGCCGTTTGGGAACTATTGT 60.225 45.455 0.00 0.00 38.47 2.71
52 53 2.159382 AGCCGTTTGGGAACTATTGTG 58.841 47.619 0.00 0.00 38.47 3.33
53 54 1.883926 GCCGTTTGGGAACTATTGTGT 59.116 47.619 0.00 0.00 38.47 3.72
54 55 3.075884 GCCGTTTGGGAACTATTGTGTA 58.924 45.455 0.00 0.00 38.47 2.90
55 56 3.502979 GCCGTTTGGGAACTATTGTGTAA 59.497 43.478 0.00 0.00 38.47 2.41
56 57 4.614306 GCCGTTTGGGAACTATTGTGTAAC 60.614 45.833 0.00 0.00 38.47 2.50
57 58 4.377635 CCGTTTGGGAACTATTGTGTAACG 60.378 45.833 0.00 0.00 37.68 3.18
58 59 4.377635 CGTTTGGGAACTATTGTGTAACGG 60.378 45.833 0.00 0.00 34.55 4.44
59 60 4.620589 TTGGGAACTATTGTGTAACGGA 57.379 40.909 0.00 0.00 42.39 4.69
60 61 4.196626 TGGGAACTATTGTGTAACGGAG 57.803 45.455 0.00 0.00 42.39 4.63
61 62 7.458375 GTTTGGGAACTATTGTGTAACGGAGT 61.458 42.308 0.00 0.00 35.74 3.85
62 63 8.857243 GTTTGGGAACTATTGTGTAACGGAGTT 61.857 40.741 0.00 0.00 42.63 3.01
77 78 4.315803 ACGGAGTTACAGATCTTTGTTGG 58.684 43.478 0.00 0.00 37.78 3.77
78 79 4.039973 ACGGAGTTACAGATCTTTGTTGGA 59.960 41.667 0.00 0.00 37.78 3.53
79 80 4.389077 CGGAGTTACAGATCTTTGTTGGAC 59.611 45.833 0.00 0.00 32.56 4.02
80 81 4.695928 GGAGTTACAGATCTTTGTTGGACC 59.304 45.833 0.00 0.00 32.56 4.46
81 82 5.513267 GGAGTTACAGATCTTTGTTGGACCT 60.513 44.000 0.00 0.00 32.56 3.85
82 83 6.295688 GGAGTTACAGATCTTTGTTGGACCTA 60.296 42.308 0.00 0.00 32.56 3.08
83 84 7.259088 AGTTACAGATCTTTGTTGGACCTAT 57.741 36.000 0.00 0.00 32.56 2.57
84 85 7.690256 AGTTACAGATCTTTGTTGGACCTATT 58.310 34.615 0.00 0.00 32.56 1.73
85 86 8.164070 AGTTACAGATCTTTGTTGGACCTATTT 58.836 33.333 0.00 0.00 32.56 1.40
86 87 8.793592 GTTACAGATCTTTGTTGGACCTATTTT 58.206 33.333 0.00 0.00 32.56 1.82
89 90 9.533831 ACAGATCTTTGTTGGACCTATTTTATT 57.466 29.630 0.00 0.00 0.00 1.40
110 111 8.804688 TTATTTTAATAAATGTGGCCGTATGC 57.195 30.769 0.00 0.00 35.61 3.14
111 112 5.836821 TTTAATAAATGTGGCCGTATGCA 57.163 34.783 0.00 0.00 43.89 3.96
112 113 6.398234 TTTAATAAATGTGGCCGTATGCAT 57.602 33.333 3.79 3.79 43.89 3.96
113 114 4.935352 AATAAATGTGGCCGTATGCATT 57.065 36.364 3.54 0.88 43.89 3.56
114 115 4.935352 ATAAATGTGGCCGTATGCATTT 57.065 36.364 3.54 18.73 43.89 2.32
115 116 3.608316 AAATGTGGCCGTATGCATTTT 57.392 38.095 3.54 0.00 43.89 1.82
116 117 3.608316 AATGTGGCCGTATGCATTTTT 57.392 38.095 3.54 0.00 43.89 1.94
117 118 2.645730 TGTGGCCGTATGCATTTTTC 57.354 45.000 3.54 0.00 43.89 2.29
118 119 2.166829 TGTGGCCGTATGCATTTTTCT 58.833 42.857 3.54 0.00 43.89 2.52
119 120 2.094803 TGTGGCCGTATGCATTTTTCTG 60.095 45.455 3.54 0.00 43.89 3.02
120 121 2.163412 GTGGCCGTATGCATTTTTCTGA 59.837 45.455 3.54 0.00 43.89 3.27
121 122 3.023119 TGGCCGTATGCATTTTTCTGAT 58.977 40.909 3.54 0.00 43.89 2.90
122 123 3.181488 TGGCCGTATGCATTTTTCTGATG 60.181 43.478 3.54 0.00 43.89 3.07
129 130 2.537401 GCATTTTTCTGATGCAGAGGC 58.463 47.619 4.35 0.00 46.96 4.70
130 131 2.737679 GCATTTTTCTGATGCAGAGGCC 60.738 50.000 0.00 0.00 46.96 5.19
131 132 1.167851 TTTTTCTGATGCAGAGGCCG 58.832 50.000 0.00 0.00 41.75 6.13
132 133 0.677731 TTTTCTGATGCAGAGGCCGG 60.678 55.000 0.00 0.00 41.75 6.13
133 134 2.541547 TTTCTGATGCAGAGGCCGGG 62.542 60.000 2.18 0.00 41.75 5.73
134 135 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
150 151 3.302344 GGCTGCGCCCTTTTTCCA 61.302 61.111 4.18 0.00 44.06 3.53
151 152 2.733945 GCTGCGCCCTTTTTCCAA 59.266 55.556 4.18 0.00 0.00 3.53
152 153 1.068921 GCTGCGCCCTTTTTCCAAA 59.931 52.632 4.18 0.00 0.00 3.28
153 154 0.531753 GCTGCGCCCTTTTTCCAAAA 60.532 50.000 4.18 0.00 0.00 2.44
154 155 1.946745 CTGCGCCCTTTTTCCAAAAA 58.053 45.000 4.18 0.00 36.53 1.94
193 194 4.639135 AACTTTGACTTTCCAACAGAGC 57.361 40.909 0.00 0.00 0.00 4.09
194 195 3.891049 ACTTTGACTTTCCAACAGAGCT 58.109 40.909 0.00 0.00 0.00 4.09
195 196 3.629398 ACTTTGACTTTCCAACAGAGCTG 59.371 43.478 0.00 0.00 0.00 4.24
196 197 2.260844 TGACTTTCCAACAGAGCTGG 57.739 50.000 0.00 0.00 35.05 4.85
197 198 1.768275 TGACTTTCCAACAGAGCTGGA 59.232 47.619 0.00 0.00 41.33 3.86
202 203 3.402628 TTCCAACAGAGCTGGAAGTAC 57.597 47.619 0.00 0.00 45.88 2.73
203 204 2.325484 TCCAACAGAGCTGGAAGTACA 58.675 47.619 0.00 0.00 40.08 2.90
204 205 2.037251 TCCAACAGAGCTGGAAGTACAC 59.963 50.000 0.00 0.00 40.08 2.90
205 206 2.037772 CCAACAGAGCTGGAAGTACACT 59.962 50.000 0.00 0.00 35.85 3.55
206 207 3.495100 CCAACAGAGCTGGAAGTACACTT 60.495 47.826 0.00 0.00 39.23 3.16
207 208 4.130118 CAACAGAGCTGGAAGTACACTTT 58.870 43.478 0.00 0.00 36.11 2.66
208 209 4.423625 ACAGAGCTGGAAGTACACTTTT 57.576 40.909 0.00 0.00 36.11 2.27
209 210 4.781934 ACAGAGCTGGAAGTACACTTTTT 58.218 39.130 0.00 0.00 36.11 1.94
210 211 4.816925 ACAGAGCTGGAAGTACACTTTTTC 59.183 41.667 0.00 0.00 36.11 2.29
211 212 4.816385 CAGAGCTGGAAGTACACTTTTTCA 59.184 41.667 0.00 0.00 36.11 2.69
212 213 5.296780 CAGAGCTGGAAGTACACTTTTTCAA 59.703 40.000 0.00 0.00 36.11 2.69
213 214 5.529060 AGAGCTGGAAGTACACTTTTTCAAG 59.471 40.000 0.00 0.00 36.11 3.02
214 215 4.580580 AGCTGGAAGTACACTTTTTCAAGG 59.419 41.667 0.00 0.00 36.11 3.61
215 216 4.578928 GCTGGAAGTACACTTTTTCAAGGA 59.421 41.667 0.00 0.00 36.11 3.36
216 217 5.505819 GCTGGAAGTACACTTTTTCAAGGAC 60.506 44.000 0.00 0.00 36.11 3.85
217 218 5.502079 TGGAAGTACACTTTTTCAAGGACA 58.498 37.500 0.00 0.00 36.11 4.02
218 219 5.588648 TGGAAGTACACTTTTTCAAGGACAG 59.411 40.000 0.00 0.00 36.11 3.51
219 220 5.820947 GGAAGTACACTTTTTCAAGGACAGA 59.179 40.000 0.00 0.00 36.11 3.41
220 221 6.017852 GGAAGTACACTTTTTCAAGGACAGAG 60.018 42.308 0.00 0.00 36.11 3.35
221 222 5.368989 AGTACACTTTTTCAAGGACAGAGG 58.631 41.667 0.00 0.00 33.82 3.69
222 223 3.555966 ACACTTTTTCAAGGACAGAGGG 58.444 45.455 0.00 0.00 33.82 4.30
223 224 3.202151 ACACTTTTTCAAGGACAGAGGGA 59.798 43.478 0.00 0.00 33.82 4.20
224 225 4.207165 CACTTTTTCAAGGACAGAGGGAA 58.793 43.478 0.00 0.00 33.82 3.97
253 254 5.157067 GGCTTGCAACAAATTAAGTCTCTC 58.843 41.667 0.00 0.00 0.00 3.20
276 277 3.497103 TGGAATGATGATCCGAATGCT 57.503 42.857 0.00 0.00 39.98 3.79
299 300 2.238646 TGCCTCCAACGGTCTATGAATT 59.761 45.455 0.00 0.00 0.00 2.17
301 302 4.080807 TGCCTCCAACGGTCTATGAATTAA 60.081 41.667 0.00 0.00 0.00 1.40
302 303 4.879545 GCCTCCAACGGTCTATGAATTAAA 59.120 41.667 0.00 0.00 0.00 1.52
303 304 5.531287 GCCTCCAACGGTCTATGAATTAAAT 59.469 40.000 0.00 0.00 0.00 1.40
304 305 6.708949 GCCTCCAACGGTCTATGAATTAAATA 59.291 38.462 0.00 0.00 0.00 1.40
305 306 7.227910 GCCTCCAACGGTCTATGAATTAAATAA 59.772 37.037 0.00 0.00 0.00 1.40
362 366 1.630126 ATGGCCTTCTCCGCATCTGT 61.630 55.000 3.32 0.00 0.00 3.41
363 367 1.817099 GGCCTTCTCCGCATCTGTG 60.817 63.158 0.00 0.00 0.00 3.66
419 424 8.981724 AAAATCAATCACAAATCTCATCACTG 57.018 30.769 0.00 0.00 0.00 3.66
420 425 7.698506 AATCAATCACAAATCTCATCACTGT 57.301 32.000 0.00 0.00 0.00 3.55
421 426 8.797350 AATCAATCACAAATCTCATCACTGTA 57.203 30.769 0.00 0.00 0.00 2.74
422 427 8.975663 ATCAATCACAAATCTCATCACTGTAT 57.024 30.769 0.00 0.00 0.00 2.29
423 428 8.797350 TCAATCACAAATCTCATCACTGTATT 57.203 30.769 0.00 0.00 0.00 1.89
424 429 8.886719 TCAATCACAAATCTCATCACTGTATTC 58.113 33.333 0.00 0.00 0.00 1.75
425 430 8.890718 CAATCACAAATCTCATCACTGTATTCT 58.109 33.333 0.00 0.00 0.00 2.40
426 431 9.458727 AATCACAAATCTCATCACTGTATTCTT 57.541 29.630 0.00 0.00 0.00 2.52
427 432 8.853077 TCACAAATCTCATCACTGTATTCTTT 57.147 30.769 0.00 0.00 0.00 2.52
428 433 9.288576 TCACAAATCTCATCACTGTATTCTTTT 57.711 29.630 0.00 0.00 0.00 2.27
429 434 9.903682 CACAAATCTCATCACTGTATTCTTTTT 57.096 29.630 0.00 0.00 0.00 1.94
446 451 3.982576 TTTTTGCCTTCTTTCTCCGAC 57.017 42.857 0.00 0.00 0.00 4.79
447 452 2.631160 TTTGCCTTCTTTCTCCGACA 57.369 45.000 0.00 0.00 0.00 4.35
448 453 1.878953 TTGCCTTCTTTCTCCGACAC 58.121 50.000 0.00 0.00 0.00 3.67
449 454 1.048601 TGCCTTCTTTCTCCGACACT 58.951 50.000 0.00 0.00 0.00 3.55
450 455 1.270305 TGCCTTCTTTCTCCGACACTG 60.270 52.381 0.00 0.00 0.00 3.66
451 456 1.270358 GCCTTCTTTCTCCGACACTGT 60.270 52.381 0.00 0.00 0.00 3.55
452 457 2.029290 GCCTTCTTTCTCCGACACTGTA 60.029 50.000 0.00 0.00 0.00 2.74
453 458 3.576648 CCTTCTTTCTCCGACACTGTAC 58.423 50.000 0.00 0.00 0.00 2.90
454 459 3.005472 CCTTCTTTCTCCGACACTGTACA 59.995 47.826 0.00 0.00 0.00 2.90
455 460 3.917329 TCTTTCTCCGACACTGTACAG 57.083 47.619 21.44 21.44 0.00 2.74
456 461 3.220110 TCTTTCTCCGACACTGTACAGT 58.780 45.455 22.95 22.95 43.61 3.55
457 462 3.635373 TCTTTCTCCGACACTGTACAGTT 59.365 43.478 25.89 16.62 40.20 3.16
458 463 3.637998 TTCTCCGACACTGTACAGTTC 57.362 47.619 25.89 22.05 40.20 3.01
459 464 1.884579 TCTCCGACACTGTACAGTTCC 59.115 52.381 25.89 17.96 40.20 3.62
460 465 0.963962 TCCGACACTGTACAGTTCCC 59.036 55.000 25.89 15.63 40.20 3.97
461 466 0.677288 CCGACACTGTACAGTTCCCA 59.323 55.000 25.89 0.00 40.20 4.37
462 467 1.604693 CCGACACTGTACAGTTCCCAC 60.605 57.143 25.89 13.49 40.20 4.61
463 468 1.067974 CGACACTGTACAGTTCCCACA 59.932 52.381 25.89 0.00 40.20 4.17
464 469 2.482316 CGACACTGTACAGTTCCCACAA 60.482 50.000 25.89 0.00 40.20 3.33
465 470 3.131396 GACACTGTACAGTTCCCACAAG 58.869 50.000 25.89 14.09 40.20 3.16
466 471 2.504175 ACACTGTACAGTTCCCACAAGT 59.496 45.455 25.89 14.73 40.20 3.16
467 472 3.707611 ACACTGTACAGTTCCCACAAGTA 59.292 43.478 25.89 0.00 40.20 2.24
468 473 4.056050 CACTGTACAGTTCCCACAAGTAC 58.944 47.826 25.89 0.00 40.20 2.73
469 474 3.707611 ACTGTACAGTTCCCACAAGTACA 59.292 43.478 22.95 0.00 41.02 2.90
470 475 4.307432 CTGTACAGTTCCCACAAGTACAG 58.693 47.826 15.06 14.26 46.67 2.74
471 476 3.962063 TGTACAGTTCCCACAAGTACAGA 59.038 43.478 0.00 0.00 39.65 3.41
472 477 3.470645 ACAGTTCCCACAAGTACAGAC 57.529 47.619 0.00 0.00 0.00 3.51
473 478 2.769663 ACAGTTCCCACAAGTACAGACA 59.230 45.455 0.00 0.00 0.00 3.41
474 479 3.391296 ACAGTTCCCACAAGTACAGACAT 59.609 43.478 0.00 0.00 0.00 3.06
475 480 4.591498 ACAGTTCCCACAAGTACAGACATA 59.409 41.667 0.00 0.00 0.00 2.29
476 481 5.171476 CAGTTCCCACAAGTACAGACATAG 58.829 45.833 0.00 0.00 0.00 2.23
477 482 4.223032 AGTTCCCACAAGTACAGACATAGG 59.777 45.833 0.00 0.00 0.00 2.57
478 483 2.500098 TCCCACAAGTACAGACATAGGC 59.500 50.000 0.00 0.00 0.00 3.93
479 484 2.236146 CCCACAAGTACAGACATAGGCA 59.764 50.000 0.00 0.00 0.00 4.75
480 485 3.118261 CCCACAAGTACAGACATAGGCAT 60.118 47.826 0.00 0.00 0.00 4.40
481 486 3.873361 CCACAAGTACAGACATAGGCATG 59.127 47.826 0.00 0.00 38.21 4.06
483 488 5.395214 CCACAAGTACAGACATAGGCATGTA 60.395 44.000 0.00 0.00 45.58 2.29
484 489 6.106003 CACAAGTACAGACATAGGCATGTAA 58.894 40.000 0.00 0.00 45.58 2.41
485 490 6.763135 CACAAGTACAGACATAGGCATGTAAT 59.237 38.462 0.00 0.00 45.58 1.89
486 491 6.763135 ACAAGTACAGACATAGGCATGTAATG 59.237 38.462 0.00 0.00 45.58 1.90
499 504 4.700268 CATGTAATGTTAAGCTGGCACA 57.300 40.909 0.00 0.00 40.20 4.57
500 505 5.058149 CATGTAATGTTAAGCTGGCACAA 57.942 39.130 0.00 0.00 40.20 3.33
501 506 4.764679 TGTAATGTTAAGCTGGCACAAG 57.235 40.909 0.00 0.00 38.70 3.16
502 507 4.141287 TGTAATGTTAAGCTGGCACAAGT 58.859 39.130 0.00 0.00 38.70 3.16
503 508 4.582656 TGTAATGTTAAGCTGGCACAAGTT 59.417 37.500 0.00 0.00 38.70 2.66
504 509 3.923017 ATGTTAAGCTGGCACAAGTTC 57.077 42.857 0.00 0.00 38.70 3.01
505 510 1.953686 TGTTAAGCTGGCACAAGTTCC 59.046 47.619 0.00 0.00 38.70 3.62
506 511 2.230660 GTTAAGCTGGCACAAGTTCCT 58.769 47.619 0.00 0.00 38.70 3.36
507 512 2.623416 GTTAAGCTGGCACAAGTTCCTT 59.377 45.455 0.00 0.00 38.70 3.36
508 513 2.656947 AAGCTGGCACAAGTTCCTTA 57.343 45.000 0.00 0.00 38.70 2.69
509 514 2.191128 AGCTGGCACAAGTTCCTTAG 57.809 50.000 0.00 0.00 38.70 2.18
510 515 0.523519 GCTGGCACAAGTTCCTTAGC 59.476 55.000 0.00 0.00 38.70 3.09
511 516 1.896220 CTGGCACAAGTTCCTTAGCA 58.104 50.000 0.00 0.00 38.70 3.49
512 517 1.537202 CTGGCACAAGTTCCTTAGCAC 59.463 52.381 0.00 0.00 38.70 4.40
513 518 1.133945 TGGCACAAGTTCCTTAGCACA 60.134 47.619 0.00 0.00 31.92 4.57
514 519 1.537202 GGCACAAGTTCCTTAGCACAG 59.463 52.381 0.00 0.00 0.00 3.66
515 520 2.222027 GCACAAGTTCCTTAGCACAGT 58.778 47.619 0.00 0.00 0.00 3.55
516 521 2.031682 GCACAAGTTCCTTAGCACAGTG 60.032 50.000 0.00 0.00 0.00 3.66
517 522 3.466836 CACAAGTTCCTTAGCACAGTGA 58.533 45.455 4.15 0.00 0.00 3.41
518 523 4.067896 CACAAGTTCCTTAGCACAGTGAT 58.932 43.478 4.15 0.00 0.00 3.06
519 524 4.153117 CACAAGTTCCTTAGCACAGTGATC 59.847 45.833 4.15 0.00 0.00 2.92
520 525 3.618690 AGTTCCTTAGCACAGTGATCC 57.381 47.619 4.15 0.00 0.00 3.36
521 526 2.906389 AGTTCCTTAGCACAGTGATCCA 59.094 45.455 4.15 0.00 0.00 3.41
522 527 3.327757 AGTTCCTTAGCACAGTGATCCAA 59.672 43.478 4.15 0.00 0.00 3.53
523 528 3.334583 TCCTTAGCACAGTGATCCAAC 57.665 47.619 4.15 0.00 0.00 3.77
524 529 2.906389 TCCTTAGCACAGTGATCCAACT 59.094 45.455 4.15 0.00 0.00 3.16
542 547 7.496346 TCCAACTGGACATCTTTTAGTATCT 57.504 36.000 0.00 0.00 39.78 1.98
564 569 6.361433 TCTTCAATTTACAGTTCCCACAAGA 58.639 36.000 0.00 0.00 0.00 3.02
603 608 9.448438 GTTAAGTATACATGCATATGGAATGGA 57.552 33.333 0.00 0.00 38.66 3.41
676 681 5.060427 TGAGTTCAAAAATGAGGGGAGAA 57.940 39.130 0.00 0.00 0.00 2.87
679 684 4.584743 AGTTCAAAAATGAGGGGAGAACAC 59.415 41.667 0.00 0.00 37.07 3.32
684 689 1.187087 ATGAGGGGAGAACACTCGAC 58.813 55.000 0.00 0.00 34.03 4.20
691 696 2.338500 GGAGAACACTCGACCAATCAC 58.662 52.381 0.00 0.00 0.00 3.06
704 709 6.561614 TCGACCAATCACTCACTAATACTTC 58.438 40.000 0.00 0.00 0.00 3.01
750 755 4.093556 GCAAGTGCTAGACCAACTAATCAC 59.906 45.833 0.00 0.00 36.15 3.06
753 758 6.852420 AGTGCTAGACCAACTAATCACTAA 57.148 37.500 0.00 0.00 40.15 2.24
796 801 4.569719 TGTCAGGGTAATCCTCCTTTTC 57.430 45.455 0.00 0.00 46.12 2.29
797 802 3.913799 TGTCAGGGTAATCCTCCTTTTCA 59.086 43.478 0.00 0.00 46.12 2.69
798 803 4.019321 TGTCAGGGTAATCCTCCTTTTCAG 60.019 45.833 0.00 0.00 46.12 3.02
802 807 6.010219 CAGGGTAATCCTCCTTTTCAGAAAA 58.990 40.000 8.09 8.09 46.12 2.29
803 808 6.493458 CAGGGTAATCCTCCTTTTCAGAAAAA 59.507 38.462 9.63 0.00 46.12 1.94
859 864 4.456911 CCGTCTACTTTACACTAGTCACCA 59.543 45.833 0.00 0.00 0.00 4.17
951 956 2.087501 TATCGGCAAGTTTCAGCGAA 57.912 45.000 0.00 0.00 0.00 4.70
956 961 1.000274 GGCAAGTTTCAGCGAAATGGT 60.000 47.619 6.93 0.00 33.97 3.55
965 970 1.136252 CAGCGAAATGGTCACAAGACG 60.136 52.381 0.00 0.00 45.92 4.18
975 980 0.456824 TCACAAGACGCAGATCGCTC 60.457 55.000 7.71 5.07 43.23 5.03
1063 1068 0.100682 CATGCTCATGCCACTGCTTC 59.899 55.000 0.00 0.00 38.71 3.86
1090 1095 1.743394 CAATGCTCATCTGCAGCTTGA 59.257 47.619 9.47 13.39 46.71 3.02
1113 1118 1.948721 GCCTTTGCCCCAGTGTATGC 61.949 60.000 0.00 0.00 0.00 3.14
1133 1138 2.031919 CTTAGCCACACCCGCACA 59.968 61.111 0.00 0.00 0.00 4.57
1155 1160 4.067896 ACCATAATGCATCAGAATCCGAC 58.932 43.478 0.00 0.00 0.00 4.79
1161 1166 1.813092 GCATCAGAATCCGACAGGCAT 60.813 52.381 0.00 0.00 37.47 4.40
1200 1205 0.898320 CACACTTCTCCGACCCTGAT 59.102 55.000 0.00 0.00 0.00 2.90
1215 1220 1.827344 CCTGATGGAGCACTACACTCA 59.173 52.381 0.00 0.00 35.79 3.41
1266 1271 2.032528 CGTGGGGTGTCATGCAGT 59.967 61.111 0.00 0.00 0.00 4.40
1269 1274 0.036164 GTGGGGTGTCATGCAGTACA 59.964 55.000 0.00 0.00 0.00 2.90
1272 1277 1.787847 GGTGTCATGCAGTACACGC 59.212 57.895 21.46 13.94 45.54 5.34
1297 1302 0.818040 AGGTCGTGTTGTTGCCCTTC 60.818 55.000 0.00 0.00 0.00 3.46
1305 1310 1.754226 GTTGTTGCCCTTCACCTTGAA 59.246 47.619 0.00 0.00 34.79 2.69
1323 1328 5.939883 CCTTGAATCACTGAACATTACTGGA 59.060 40.000 0.00 0.00 0.00 3.86
1344 1349 4.098349 GGACAAATATCTCCTTGCATTGCA 59.902 41.667 7.38 7.38 36.47 4.08
1363 1368 0.317479 AGGACTTCGTTTCCTCCGTG 59.683 55.000 0.00 0.00 39.47 4.94
1387 1392 7.661437 GTGGAATTCACATAGCTGATAACCATA 59.339 37.037 7.93 0.00 45.39 2.74
1417 1422 3.181461 CCACATACCTCCTGAGATTGGTC 60.181 52.174 0.00 0.00 34.33 4.02
1422 1427 1.403814 CTCCTGAGATTGGTCGCCTA 58.596 55.000 0.00 0.00 0.00 3.93
1553 1558 1.424638 ACAGGGGTGATTCCGGATAG 58.575 55.000 4.15 0.00 37.00 2.08
1670 1675 6.748333 TCAGGAAATTGTTCTGAGCAATAG 57.252 37.500 18.14 8.12 35.73 1.73
1721 1726 3.280295 TCGGTTTGCTTCACAACCTTAA 58.720 40.909 0.00 0.00 38.23 1.85
1752 1757 4.640771 TCTCCCTAGCAACAAACTTGAT 57.359 40.909 0.00 0.00 0.00 2.57
1767 1772 1.065102 CTTGATGGCAGCATTCCTTCG 59.935 52.381 6.15 0.00 28.21 3.79
1776 1781 0.811281 GCATTCCTTCGTCTTTGGGG 59.189 55.000 0.00 0.00 0.00 4.96
1911 1916 3.977326 ACCTTAATGGAGAGATCCCTTCC 59.023 47.826 0.00 0.00 39.71 3.46
1914 1919 1.418334 ATGGAGAGATCCCTTCCACG 58.582 55.000 11.40 0.00 32.85 4.94
1925 1930 3.343617 TCCCTTCCACGCTTTTTGATAG 58.656 45.455 0.00 0.00 0.00 2.08
1996 2001 4.833478 ATACCAGCTTTCTCACTGTCAT 57.167 40.909 0.00 0.00 31.76 3.06
2034 2039 4.070009 ACCTTAGCCTAACCGAAAACAAG 58.930 43.478 0.00 0.00 0.00 3.16
2061 2066 2.076863 GGAGAAATTCCACCGACACTG 58.923 52.381 0.00 0.00 46.01 3.66
2073 2078 1.263217 CCGACACTGGGAAACTTTTCG 59.737 52.381 0.00 0.00 38.06 3.46
2074 2079 1.937899 CGACACTGGGAAACTTTTCGT 59.062 47.619 0.00 0.00 38.06 3.85
2112 2117 2.665052 GCTTGCTCAAAATAAGCTGCAC 59.335 45.455 1.02 0.00 42.55 4.57
2148 2153 7.169813 CCAGAAAGTTTAACCAGAATTCAAAGC 59.830 37.037 8.44 0.00 0.00 3.51
2152 2157 7.454260 AGTTTAACCAGAATTCAAAGCCTAG 57.546 36.000 8.44 0.00 0.00 3.02
2155 2160 8.357402 GTTTAACCAGAATTCAAAGCCTAGAAA 58.643 33.333 8.44 0.00 0.00 2.52
2224 2229 2.544480 TTACACAGTCGCATCTCTCG 57.456 50.000 0.00 0.00 0.00 4.04
2490 2495 2.618302 CGGAGAGGTAGACTGGAGTTCA 60.618 54.545 0.00 0.00 0.00 3.18
2523 2528 2.229792 CCAGCCTCTGCACAGTTAAAA 58.770 47.619 0.00 0.00 41.13 1.52
2535 2540 7.606073 TCTGCACAGTTAAAAGCAATGTATCTA 59.394 33.333 0.00 0.00 36.44 1.98
2610 2615 6.391227 AGCAGCTTACAGTTGTTGTATTTT 57.609 33.333 0.00 0.00 41.72 1.82
2683 2688 5.070001 CCAACCTCACAGTTCTCCAATTTA 58.930 41.667 0.00 0.00 0.00 1.40
2763 2768 2.637872 TCTCCTCGGTTTGTCAAGGAAT 59.362 45.455 0.00 0.00 37.46 3.01
2778 2783 6.936900 TGTCAAGGAATAAACTTTCTGGAGAG 59.063 38.462 0.00 0.00 0.00 3.20
2847 2852 2.731217 CAAGAAAACAACTTGAGCGGG 58.269 47.619 0.00 0.00 44.92 6.13
3299 3304 2.590611 AGGGGATAGTTCCTACAGGTGA 59.409 50.000 0.00 0.00 42.20 4.02
3625 3630 0.850100 TGGCTCAGGGAGTTTTGGAA 59.150 50.000 0.00 0.00 31.39 3.53
3888 3893 7.857734 TTCAGAAGTACATGAACAAAGACAA 57.142 32.000 0.00 0.00 30.67 3.18
3939 3947 3.533606 ATGATAGCTATGGACATCGCC 57.466 47.619 11.94 0.00 30.67 5.54
3972 3980 2.291209 ATCTCCACAATTGGTGCACA 57.709 45.000 20.43 0.00 46.50 4.57
4170 4178 6.375455 CAGGTAAGCACTTCTATGTTTCCAAT 59.625 38.462 0.00 0.00 0.00 3.16
4195 4203 6.639563 AGTTGTTGAACATAAACTGCCTTTT 58.360 32.000 0.00 0.00 34.17 2.27
4213 4221 6.046593 GCCTTTTAACCTAAAAACAAGTGCT 58.953 36.000 0.00 0.00 37.22 4.40
4227 4235 0.950116 AGTGCTGCAGCTTCAGAAAC 59.050 50.000 36.61 24.66 42.66 2.78
4250 4258 8.809468 AACTTTCCTTCCTTAACATAGGATTC 57.191 34.615 0.00 0.00 43.66 2.52
4252 4260 8.390921 ACTTTCCTTCCTTAACATAGGATTCAA 58.609 33.333 0.00 0.00 43.66 2.69
4318 4326 2.154462 GGGATGGGTTGCAAGATATCG 58.846 52.381 0.00 0.00 0.00 2.92
4417 4425 2.859165 TGGATGGACTGAACCTTCAC 57.141 50.000 0.00 0.00 36.31 3.18
4454 4462 7.828717 TCTCTGCATTTCCACAAGATATTTGTA 59.171 33.333 0.00 0.00 0.00 2.41
4521 4529 4.885907 AGCAAATCACAGATTAGATGGTGG 59.114 41.667 0.00 0.00 32.29 4.61
4549 4557 2.971330 TCTGGTGGTTGGAATGCAAAAT 59.029 40.909 0.00 0.00 0.00 1.82
4730 4738 1.173913 GTCCCAAGGTGTGTTATGCC 58.826 55.000 0.00 0.00 0.00 4.40
4734 4742 1.086696 CAAGGTGTGTTATGCCCGAG 58.913 55.000 0.00 0.00 0.00 4.63
4743 4751 3.978855 GTGTTATGCCCGAGTTTTGTTTC 59.021 43.478 0.00 0.00 0.00 2.78
4783 4791 4.195416 CAAGTTCTTGGCTCCCTCTATTC 58.805 47.826 4.80 0.00 0.00 1.75
4790 4798 0.963225 GCTCCCTCTATTCCGTCTCC 59.037 60.000 0.00 0.00 0.00 3.71
4808 4816 6.019801 CCGTCTCCTTTGTCATTCTAATTACG 60.020 42.308 0.00 0.00 0.00 3.18
4815 4823 9.708222 CCTTTGTCATTCTAATTACGATTTCAG 57.292 33.333 0.00 0.00 0.00 3.02
4864 4872 3.591023 GACTTCCTGTAGTCTTGCTTCC 58.409 50.000 0.00 0.00 41.07 3.46
4868 4876 5.105146 ACTTCCTGTAGTCTTGCTTCCTATG 60.105 44.000 0.00 0.00 0.00 2.23
4879 4887 7.508636 AGTCTTGCTTCCTATGATGAGATAGAA 59.491 37.037 0.00 0.00 0.00 2.10
4981 4989 9.157104 TGCATATGTCGAAGAAATAACTTACAA 57.843 29.630 4.29 0.00 40.53 2.41
5115 5124 2.737252 GTCAAAAGCTGAGGGTCGTAAG 59.263 50.000 0.00 0.00 33.60 2.34
5285 5320 6.264518 GTCCAATTCGGTGTTCCCATTTATAT 59.735 38.462 0.00 0.00 35.57 0.86
5286 5321 6.836527 TCCAATTCGGTGTTCCCATTTATATT 59.163 34.615 0.00 0.00 35.57 1.28
5664 5702 8.654230 ATCTTTACAACACAGATATGCTACAG 57.346 34.615 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.930371 GCAAAGTAAAAGCCACAGCCG 60.930 52.381 0.00 0.00 41.25 5.52
1 2 1.341209 AGCAAAGTAAAAGCCACAGCC 59.659 47.619 0.00 0.00 41.25 4.85
2 3 2.397549 CAGCAAAGTAAAAGCCACAGC 58.602 47.619 0.00 0.00 40.32 4.40
3 4 2.035066 AGCAGCAAAGTAAAAGCCACAG 59.965 45.455 0.00 0.00 0.00 3.66
4 5 2.031120 AGCAGCAAAGTAAAAGCCACA 58.969 42.857 0.00 0.00 0.00 4.17
5 6 2.294512 AGAGCAGCAAAGTAAAAGCCAC 59.705 45.455 0.00 0.00 0.00 5.01
6 7 2.586425 AGAGCAGCAAAGTAAAAGCCA 58.414 42.857 0.00 0.00 0.00 4.75
7 8 3.650070 AAGAGCAGCAAAGTAAAAGCC 57.350 42.857 0.00 0.00 0.00 4.35
8 9 4.207841 CACAAAGAGCAGCAAAGTAAAAGC 59.792 41.667 0.00 0.00 0.00 3.51
9 10 5.581605 TCACAAAGAGCAGCAAAGTAAAAG 58.418 37.500 0.00 0.00 0.00 2.27
10 11 5.574891 TCACAAAGAGCAGCAAAGTAAAA 57.425 34.783 0.00 0.00 0.00 1.52
11 12 5.173774 CTCACAAAGAGCAGCAAAGTAAA 57.826 39.130 0.00 0.00 37.59 2.01
12 13 4.818534 CTCACAAAGAGCAGCAAAGTAA 57.181 40.909 0.00 0.00 37.59 2.24
24 25 0.181587 TCCCAAACGGCTCACAAAGA 59.818 50.000 0.00 0.00 0.00 2.52
25 26 1.028905 TTCCCAAACGGCTCACAAAG 58.971 50.000 0.00 0.00 0.00 2.77
26 27 0.741915 GTTCCCAAACGGCTCACAAA 59.258 50.000 0.00 0.00 0.00 2.83
27 28 0.106918 AGTTCCCAAACGGCTCACAA 60.107 50.000 0.00 0.00 40.48 3.33
28 29 0.759959 TAGTTCCCAAACGGCTCACA 59.240 50.000 0.00 0.00 40.48 3.58
29 30 2.109425 ATAGTTCCCAAACGGCTCAC 57.891 50.000 0.00 0.00 40.48 3.51
30 31 2.224670 ACAATAGTTCCCAAACGGCTCA 60.225 45.455 0.00 0.00 40.48 4.26
31 32 2.161609 CACAATAGTTCCCAAACGGCTC 59.838 50.000 0.00 0.00 40.48 4.70
32 33 2.159382 CACAATAGTTCCCAAACGGCT 58.841 47.619 0.00 0.00 40.48 5.52
33 34 1.883926 ACACAATAGTTCCCAAACGGC 59.116 47.619 0.00 0.00 40.48 5.68
34 35 4.377635 CGTTACACAATAGTTCCCAAACGG 60.378 45.833 0.00 0.00 40.48 4.44
35 36 4.377635 CCGTTACACAATAGTTCCCAAACG 60.378 45.833 0.00 0.00 40.48 3.60
36 37 4.756135 TCCGTTACACAATAGTTCCCAAAC 59.244 41.667 0.00 0.00 35.50 2.93
37 38 4.970711 TCCGTTACACAATAGTTCCCAAA 58.029 39.130 0.00 0.00 0.00 3.28
38 39 4.040706 ACTCCGTTACACAATAGTTCCCAA 59.959 41.667 0.00 0.00 0.00 4.12
39 40 3.579586 ACTCCGTTACACAATAGTTCCCA 59.420 43.478 0.00 0.00 0.00 4.37
40 41 4.198028 ACTCCGTTACACAATAGTTCCC 57.802 45.455 0.00 0.00 0.00 3.97
41 42 6.638168 GTAACTCCGTTACACAATAGTTCC 57.362 41.667 10.97 0.00 45.19 3.62
52 53 6.128634 CCAACAAAGATCTGTAACTCCGTTAC 60.129 42.308 0.00 9.35 45.80 2.50
53 54 5.929992 CCAACAAAGATCTGTAACTCCGTTA 59.070 40.000 0.00 0.00 0.00 3.18
54 55 4.755123 CCAACAAAGATCTGTAACTCCGTT 59.245 41.667 0.00 0.00 0.00 4.44
55 56 4.039973 TCCAACAAAGATCTGTAACTCCGT 59.960 41.667 0.00 0.00 0.00 4.69
56 57 4.389077 GTCCAACAAAGATCTGTAACTCCG 59.611 45.833 0.00 0.00 0.00 4.63
57 58 4.695928 GGTCCAACAAAGATCTGTAACTCC 59.304 45.833 0.00 0.00 0.00 3.85
58 59 5.552178 AGGTCCAACAAAGATCTGTAACTC 58.448 41.667 0.00 0.00 0.00 3.01
59 60 5.568620 AGGTCCAACAAAGATCTGTAACT 57.431 39.130 0.00 0.00 0.00 2.24
60 61 7.923414 AATAGGTCCAACAAAGATCTGTAAC 57.077 36.000 0.00 0.00 0.00 2.50
61 62 8.934023 AAAATAGGTCCAACAAAGATCTGTAA 57.066 30.769 0.00 0.00 0.00 2.41
63 64 9.533831 AATAAAATAGGTCCAACAAAGATCTGT 57.466 29.630 0.00 0.00 0.00 3.41
84 85 9.250624 GCATACGGCCACATTTATTAAAATAAA 57.749 29.630 2.24 9.64 39.52 1.40
85 86 8.414003 TGCATACGGCCACATTTATTAAAATAA 58.586 29.630 2.24 0.00 43.89 1.40
86 87 7.941919 TGCATACGGCCACATTTATTAAAATA 58.058 30.769 2.24 0.00 43.89 1.40
87 88 6.810911 TGCATACGGCCACATTTATTAAAAT 58.189 32.000 2.24 0.00 43.89 1.82
88 89 6.208988 TGCATACGGCCACATTTATTAAAA 57.791 33.333 2.24 0.00 43.89 1.52
89 90 5.836821 TGCATACGGCCACATTTATTAAA 57.163 34.783 2.24 0.00 43.89 1.52
90 91 6.398234 AATGCATACGGCCACATTTATTAA 57.602 33.333 2.24 0.00 43.89 1.40
91 92 6.398234 AAATGCATACGGCCACATTTATTA 57.602 33.333 2.24 0.00 40.08 0.98
92 93 4.935352 AATGCATACGGCCACATTTATT 57.065 36.364 2.24 0.00 43.89 1.40
93 94 4.935352 AAATGCATACGGCCACATTTAT 57.065 36.364 2.24 0.00 40.08 1.40
94 95 4.727507 AAAATGCATACGGCCACATTTA 57.272 36.364 2.24 0.00 40.77 1.40
95 96 3.608316 AAAATGCATACGGCCACATTT 57.392 38.095 2.24 7.64 42.81 2.32
96 97 3.195396 AGAAAAATGCATACGGCCACATT 59.805 39.130 2.24 1.16 43.89 2.71
97 98 2.760092 AGAAAAATGCATACGGCCACAT 59.240 40.909 2.24 0.00 43.89 3.21
98 99 2.094803 CAGAAAAATGCATACGGCCACA 60.095 45.455 2.24 0.00 43.89 4.17
99 100 2.163412 TCAGAAAAATGCATACGGCCAC 59.837 45.455 2.24 0.00 43.89 5.01
100 101 2.441410 TCAGAAAAATGCATACGGCCA 58.559 42.857 2.24 0.00 43.89 5.36
101 102 3.374745 CATCAGAAAAATGCATACGGCC 58.625 45.455 0.00 0.00 43.89 6.13
102 103 2.791004 GCATCAGAAAAATGCATACGGC 59.209 45.455 0.00 0.00 46.93 5.68
110 111 2.479049 CGGCCTCTGCATCAGAAAAATG 60.479 50.000 0.00 0.00 40.18 2.32
111 112 1.747355 CGGCCTCTGCATCAGAAAAAT 59.253 47.619 0.00 0.00 40.18 1.82
112 113 1.167851 CGGCCTCTGCATCAGAAAAA 58.832 50.000 0.00 0.00 40.18 1.94
113 114 0.677731 CCGGCCTCTGCATCAGAAAA 60.678 55.000 0.00 0.00 40.18 2.29
114 115 1.078214 CCGGCCTCTGCATCAGAAA 60.078 57.895 0.00 0.00 40.18 2.52
115 116 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
116 117 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
117 118 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
134 135 2.076985 TTTTTGGAAAAAGGGCGCAGC 61.077 47.619 10.83 0.00 42.43 5.25
135 136 1.946745 TTTTTGGAAAAAGGGCGCAG 58.053 45.000 10.83 0.00 33.29 5.18
169 170 5.869344 GCTCTGTTGGAAAGTCAAAGTTTTT 59.131 36.000 0.00 0.00 0.00 1.94
170 171 5.185828 AGCTCTGTTGGAAAGTCAAAGTTTT 59.814 36.000 0.00 0.00 0.00 2.43
171 172 4.706962 AGCTCTGTTGGAAAGTCAAAGTTT 59.293 37.500 0.00 0.00 0.00 2.66
172 173 4.096984 CAGCTCTGTTGGAAAGTCAAAGTT 59.903 41.667 0.00 0.00 0.00 2.66
173 174 3.629398 CAGCTCTGTTGGAAAGTCAAAGT 59.371 43.478 0.00 0.00 0.00 2.66
174 175 3.004106 CCAGCTCTGTTGGAAAGTCAAAG 59.996 47.826 0.00 0.00 35.94 2.77
175 176 2.951642 CCAGCTCTGTTGGAAAGTCAAA 59.048 45.455 0.00 0.00 35.94 2.69
176 177 2.172505 TCCAGCTCTGTTGGAAAGTCAA 59.827 45.455 0.69 0.00 39.86 3.18
177 178 1.768275 TCCAGCTCTGTTGGAAAGTCA 59.232 47.619 0.69 0.00 39.86 3.41
178 179 2.550830 TCCAGCTCTGTTGGAAAGTC 57.449 50.000 0.69 0.00 39.86 3.01
183 184 2.037251 GTGTACTTCCAGCTCTGTTGGA 59.963 50.000 0.00 0.00 41.02 3.53
184 185 2.037772 AGTGTACTTCCAGCTCTGTTGG 59.962 50.000 0.00 0.00 35.19 3.77
185 186 3.393089 AGTGTACTTCCAGCTCTGTTG 57.607 47.619 0.00 0.00 0.00 3.33
186 187 4.423625 AAAGTGTACTTCCAGCTCTGTT 57.576 40.909 0.00 0.00 34.61 3.16
187 188 4.423625 AAAAGTGTACTTCCAGCTCTGT 57.576 40.909 0.00 0.00 34.61 3.41
188 189 4.816385 TGAAAAAGTGTACTTCCAGCTCTG 59.184 41.667 0.00 0.00 34.61 3.35
189 190 5.036117 TGAAAAAGTGTACTTCCAGCTCT 57.964 39.130 0.00 0.00 34.61 4.09
190 191 5.278022 CCTTGAAAAAGTGTACTTCCAGCTC 60.278 44.000 0.00 0.00 34.61 4.09
191 192 4.580580 CCTTGAAAAAGTGTACTTCCAGCT 59.419 41.667 0.00 0.00 34.61 4.24
192 193 4.578928 TCCTTGAAAAAGTGTACTTCCAGC 59.421 41.667 0.00 0.00 34.61 4.85
193 194 5.588648 TGTCCTTGAAAAAGTGTACTTCCAG 59.411 40.000 0.00 0.00 34.61 3.86
194 195 5.502079 TGTCCTTGAAAAAGTGTACTTCCA 58.498 37.500 0.00 0.00 34.61 3.53
195 196 5.820947 TCTGTCCTTGAAAAAGTGTACTTCC 59.179 40.000 0.00 0.00 34.61 3.46
196 197 6.017852 CCTCTGTCCTTGAAAAAGTGTACTTC 60.018 42.308 0.00 0.00 34.61 3.01
197 198 5.823045 CCTCTGTCCTTGAAAAAGTGTACTT 59.177 40.000 0.00 0.00 37.91 2.24
198 199 5.368989 CCTCTGTCCTTGAAAAAGTGTACT 58.631 41.667 0.00 0.00 0.00 2.73
199 200 4.515567 CCCTCTGTCCTTGAAAAAGTGTAC 59.484 45.833 0.00 0.00 0.00 2.90
200 201 4.410883 TCCCTCTGTCCTTGAAAAAGTGTA 59.589 41.667 0.00 0.00 0.00 2.90
201 202 3.202151 TCCCTCTGTCCTTGAAAAAGTGT 59.798 43.478 0.00 0.00 0.00 3.55
202 203 3.820557 TCCCTCTGTCCTTGAAAAAGTG 58.179 45.455 0.00 0.00 0.00 3.16
203 204 4.519906 TTCCCTCTGTCCTTGAAAAAGT 57.480 40.909 0.00 0.00 0.00 2.66
204 205 7.414540 CGAATATTCCCTCTGTCCTTGAAAAAG 60.415 40.741 9.87 0.00 0.00 2.27
205 206 6.374333 CGAATATTCCCTCTGTCCTTGAAAAA 59.626 38.462 9.87 0.00 0.00 1.94
206 207 5.880332 CGAATATTCCCTCTGTCCTTGAAAA 59.120 40.000 9.87 0.00 0.00 2.29
207 208 5.428253 CGAATATTCCCTCTGTCCTTGAAA 58.572 41.667 9.87 0.00 0.00 2.69
208 209 4.141711 CCGAATATTCCCTCTGTCCTTGAA 60.142 45.833 9.87 0.00 0.00 2.69
209 210 3.388024 CCGAATATTCCCTCTGTCCTTGA 59.612 47.826 9.87 0.00 0.00 3.02
210 211 3.733337 CCGAATATTCCCTCTGTCCTTG 58.267 50.000 9.87 0.00 0.00 3.61
211 212 2.104963 GCCGAATATTCCCTCTGTCCTT 59.895 50.000 9.87 0.00 0.00 3.36
212 213 1.694696 GCCGAATATTCCCTCTGTCCT 59.305 52.381 9.87 0.00 0.00 3.85
213 214 1.694696 AGCCGAATATTCCCTCTGTCC 59.305 52.381 9.87 0.00 0.00 4.02
214 215 3.134458 CAAGCCGAATATTCCCTCTGTC 58.866 50.000 9.87 0.00 0.00 3.51
215 216 2.746472 GCAAGCCGAATATTCCCTCTGT 60.746 50.000 9.87 0.00 0.00 3.41
216 217 1.876156 GCAAGCCGAATATTCCCTCTG 59.124 52.381 9.87 4.31 0.00 3.35
217 218 1.490490 TGCAAGCCGAATATTCCCTCT 59.510 47.619 9.87 1.97 0.00 3.69
218 219 1.967319 TGCAAGCCGAATATTCCCTC 58.033 50.000 9.87 0.00 0.00 4.30
219 220 2.024414 GTTGCAAGCCGAATATTCCCT 58.976 47.619 9.87 3.93 0.00 4.20
220 221 1.748493 TGTTGCAAGCCGAATATTCCC 59.252 47.619 9.87 1.65 0.00 3.97
221 222 3.502191 TTGTTGCAAGCCGAATATTCC 57.498 42.857 9.87 0.00 0.00 3.01
222 223 7.275560 ACTTAATTTGTTGCAAGCCGAATATTC 59.724 33.333 0.00 5.30 0.00 1.75
223 224 7.096551 ACTTAATTTGTTGCAAGCCGAATATT 58.903 30.769 0.00 0.00 0.00 1.28
224 225 6.630071 ACTTAATTTGTTGCAAGCCGAATAT 58.370 32.000 0.00 0.00 0.00 1.28
253 254 4.277672 AGCATTCGGATCATCATTCCAAAG 59.722 41.667 0.00 0.00 32.45 2.77
276 277 0.824109 CATAGACCGTTGGAGGCAGA 59.176 55.000 0.00 0.00 33.69 4.26
336 337 1.134367 GCGGAGAAGGCCATTTTTACC 59.866 52.381 5.01 0.00 0.00 2.85
338 339 2.208132 TGCGGAGAAGGCCATTTTTA 57.792 45.000 5.01 0.00 0.00 1.52
344 348 2.293318 ACAGATGCGGAGAAGGCCA 61.293 57.895 5.01 0.00 0.00 5.36
397 402 8.975663 ATACAGTGATGAGATTTGTGATTGAT 57.024 30.769 0.00 0.00 0.00 2.57
398 403 8.797350 AATACAGTGATGAGATTTGTGATTGA 57.203 30.769 0.00 0.00 0.00 2.57
399 404 8.890718 AGAATACAGTGATGAGATTTGTGATTG 58.109 33.333 0.00 0.00 0.00 2.67
400 405 9.458727 AAGAATACAGTGATGAGATTTGTGATT 57.541 29.630 0.00 0.00 0.00 2.57
401 406 9.458727 AAAGAATACAGTGATGAGATTTGTGAT 57.541 29.630 0.00 0.00 0.00 3.06
402 407 8.853077 AAAGAATACAGTGATGAGATTTGTGA 57.147 30.769 0.00 0.00 0.00 3.58
403 408 9.903682 AAAAAGAATACAGTGATGAGATTTGTG 57.096 29.630 0.00 0.00 0.00 3.33
426 431 3.066203 GTGTCGGAGAAAGAAGGCAAAAA 59.934 43.478 0.00 0.00 39.69 1.94
427 432 2.616842 GTGTCGGAGAAAGAAGGCAAAA 59.383 45.455 0.00 0.00 39.69 2.44
428 433 2.158813 AGTGTCGGAGAAAGAAGGCAAA 60.159 45.455 0.00 0.00 39.69 3.68
429 434 1.416401 AGTGTCGGAGAAAGAAGGCAA 59.584 47.619 0.00 0.00 39.69 4.52
430 435 1.048601 AGTGTCGGAGAAAGAAGGCA 58.951 50.000 0.00 0.00 39.69 4.75
431 436 1.270358 ACAGTGTCGGAGAAAGAAGGC 60.270 52.381 0.00 0.00 39.69 4.35
432 437 2.821991 ACAGTGTCGGAGAAAGAAGG 57.178 50.000 0.00 0.00 39.69 3.46
433 438 4.230657 CTGTACAGTGTCGGAGAAAGAAG 58.769 47.826 15.06 0.00 39.69 2.85
434 439 3.635373 ACTGTACAGTGTCGGAGAAAGAA 59.365 43.478 27.41 0.00 40.75 2.52
435 440 3.220110 ACTGTACAGTGTCGGAGAAAGA 58.780 45.455 27.41 0.00 40.75 2.52
436 441 3.644884 ACTGTACAGTGTCGGAGAAAG 57.355 47.619 27.41 0.00 40.75 2.62
437 442 3.243636 GGAACTGTACAGTGTCGGAGAAA 60.244 47.826 28.55 0.00 41.58 2.52
438 443 2.295349 GGAACTGTACAGTGTCGGAGAA 59.705 50.000 28.55 0.00 41.58 2.87
439 444 1.884579 GGAACTGTACAGTGTCGGAGA 59.115 52.381 28.55 0.00 41.58 3.71
440 445 1.067776 GGGAACTGTACAGTGTCGGAG 60.068 57.143 28.55 0.81 41.58 4.63
441 446 0.963962 GGGAACTGTACAGTGTCGGA 59.036 55.000 28.55 0.00 41.58 4.55
442 447 0.677288 TGGGAACTGTACAGTGTCGG 59.323 55.000 28.55 2.40 41.58 4.79
443 448 1.067974 TGTGGGAACTGTACAGTGTCG 59.932 52.381 28.55 3.19 41.58 4.35
444 449 2.902705 TGTGGGAACTGTACAGTGTC 57.097 50.000 28.55 23.76 41.58 3.67
445 450 2.504175 ACTTGTGGGAACTGTACAGTGT 59.496 45.455 28.55 17.95 41.58 3.55
446 451 3.194005 ACTTGTGGGAACTGTACAGTG 57.806 47.619 28.55 15.50 41.58 3.66
447 452 3.707611 TGTACTTGTGGGAACTGTACAGT 59.292 43.478 22.95 22.95 44.94 3.55
448 453 4.330944 TGTACTTGTGGGAACTGTACAG 57.669 45.455 21.44 21.44 38.62 2.74
449 454 3.962063 TCTGTACTTGTGGGAACTGTACA 59.038 43.478 0.00 0.00 40.41 2.90
450 455 4.202182 TGTCTGTACTTGTGGGAACTGTAC 60.202 45.833 0.00 0.00 35.43 2.90
451 456 3.962063 TGTCTGTACTTGTGGGAACTGTA 59.038 43.478 0.00 0.00 0.00 2.74
452 457 2.769663 TGTCTGTACTTGTGGGAACTGT 59.230 45.455 0.00 0.00 0.00 3.55
453 458 3.469008 TGTCTGTACTTGTGGGAACTG 57.531 47.619 0.00 0.00 0.00 3.16
454 459 4.223032 CCTATGTCTGTACTTGTGGGAACT 59.777 45.833 0.00 0.00 0.00 3.01
455 460 4.504858 CCTATGTCTGTACTTGTGGGAAC 58.495 47.826 0.00 0.00 0.00 3.62
456 461 3.055385 GCCTATGTCTGTACTTGTGGGAA 60.055 47.826 0.00 0.00 0.00 3.97
457 462 2.500098 GCCTATGTCTGTACTTGTGGGA 59.500 50.000 0.00 0.00 0.00 4.37
458 463 2.236146 TGCCTATGTCTGTACTTGTGGG 59.764 50.000 0.00 0.00 0.00 4.61
459 464 3.610040 TGCCTATGTCTGTACTTGTGG 57.390 47.619 0.00 0.00 0.00 4.17
460 465 4.507710 ACATGCCTATGTCTGTACTTGTG 58.492 43.478 0.00 0.00 44.00 3.33
461 466 4.826274 ACATGCCTATGTCTGTACTTGT 57.174 40.909 0.00 0.00 44.00 3.16
462 467 6.763135 ACATTACATGCCTATGTCTGTACTTG 59.237 38.462 0.00 0.00 44.00 3.16
463 468 6.889198 ACATTACATGCCTATGTCTGTACTT 58.111 36.000 0.00 0.00 44.00 2.24
464 469 6.485830 ACATTACATGCCTATGTCTGTACT 57.514 37.500 0.00 0.00 44.00 2.73
465 470 8.657074 TTAACATTACATGCCTATGTCTGTAC 57.343 34.615 7.99 0.00 44.00 2.90
466 471 7.441157 GCTTAACATTACATGCCTATGTCTGTA 59.559 37.037 7.99 0.00 44.00 2.74
467 472 6.260936 GCTTAACATTACATGCCTATGTCTGT 59.739 38.462 7.99 0.50 44.00 3.41
468 473 6.484643 AGCTTAACATTACATGCCTATGTCTG 59.515 38.462 7.99 0.00 44.00 3.51
469 474 6.484643 CAGCTTAACATTACATGCCTATGTCT 59.515 38.462 7.99 0.69 44.00 3.41
470 475 6.293626 CCAGCTTAACATTACATGCCTATGTC 60.294 42.308 7.99 0.00 44.00 3.06
472 477 5.563475 GCCAGCTTAACATTACATGCCTATG 60.563 44.000 0.00 0.00 40.24 2.23
473 478 4.520492 GCCAGCTTAACATTACATGCCTAT 59.480 41.667 0.00 0.00 0.00 2.57
474 479 3.882888 GCCAGCTTAACATTACATGCCTA 59.117 43.478 0.00 0.00 0.00 3.93
475 480 2.689983 GCCAGCTTAACATTACATGCCT 59.310 45.455 0.00 0.00 0.00 4.75
476 481 2.426738 TGCCAGCTTAACATTACATGCC 59.573 45.455 0.00 0.00 0.00 4.40
477 482 3.119531 TGTGCCAGCTTAACATTACATGC 60.120 43.478 0.00 0.00 0.00 4.06
478 483 4.700268 TGTGCCAGCTTAACATTACATG 57.300 40.909 0.00 0.00 0.00 3.21
479 484 4.766891 ACTTGTGCCAGCTTAACATTACAT 59.233 37.500 0.00 0.00 0.00 2.29
480 485 4.141287 ACTTGTGCCAGCTTAACATTACA 58.859 39.130 0.00 0.00 0.00 2.41
481 486 4.766404 ACTTGTGCCAGCTTAACATTAC 57.234 40.909 0.00 0.00 0.00 1.89
482 487 4.217550 GGAACTTGTGCCAGCTTAACATTA 59.782 41.667 0.00 0.00 0.00 1.90
483 488 3.005791 GGAACTTGTGCCAGCTTAACATT 59.994 43.478 0.00 0.00 0.00 2.71
484 489 2.558359 GGAACTTGTGCCAGCTTAACAT 59.442 45.455 0.00 0.00 0.00 2.71
485 490 1.953686 GGAACTTGTGCCAGCTTAACA 59.046 47.619 0.00 0.00 0.00 2.41
486 491 2.230660 AGGAACTTGTGCCAGCTTAAC 58.769 47.619 0.01 0.00 27.25 2.01
487 492 2.656947 AGGAACTTGTGCCAGCTTAA 57.343 45.000 0.01 0.00 27.25 1.85
500 505 8.911494 CAGTTGGATCACTGTGCTAAGGAACT 62.911 46.154 2.12 3.88 39.37 3.01
501 506 3.334583 TGGATCACTGTGCTAAGGAAC 57.665 47.619 2.12 0.00 0.00 3.62
502 507 3.327757 AGTTGGATCACTGTGCTAAGGAA 59.672 43.478 2.12 0.00 0.00 3.36
503 508 2.906389 AGTTGGATCACTGTGCTAAGGA 59.094 45.455 2.12 0.00 0.00 3.36
504 509 3.005554 CAGTTGGATCACTGTGCTAAGG 58.994 50.000 2.12 0.00 39.59 2.69
505 510 3.005554 CCAGTTGGATCACTGTGCTAAG 58.994 50.000 11.16 0.00 42.45 2.18
506 511 2.637382 TCCAGTTGGATCACTGTGCTAA 59.363 45.455 11.16 0.00 42.45 3.09
507 512 2.256306 TCCAGTTGGATCACTGTGCTA 58.744 47.619 11.16 0.00 42.45 3.49
508 513 1.059098 TCCAGTTGGATCACTGTGCT 58.941 50.000 11.16 0.00 42.45 4.40
509 514 3.631453 TCCAGTTGGATCACTGTGC 57.369 52.632 11.16 0.00 42.45 4.57
518 523 7.496346 AGATACTAAAAGATGTCCAGTTGGA 57.504 36.000 0.00 0.00 43.08 3.53
519 524 7.824289 TGAAGATACTAAAAGATGTCCAGTTGG 59.176 37.037 0.00 0.00 0.00 3.77
520 525 8.777865 TGAAGATACTAAAAGATGTCCAGTTG 57.222 34.615 0.00 0.00 0.00 3.16
521 526 9.965902 ATTGAAGATACTAAAAGATGTCCAGTT 57.034 29.630 0.00 0.00 0.00 3.16
522 527 9.965902 AATTGAAGATACTAAAAGATGTCCAGT 57.034 29.630 0.00 0.00 0.00 4.00
534 539 9.444600 GTGGGAACTGTAAATTGAAGATACTAA 57.555 33.333 0.00 0.00 0.00 2.24
535 540 8.598916 TGTGGGAACTGTAAATTGAAGATACTA 58.401 33.333 0.00 0.00 0.00 1.82
536 541 7.458397 TGTGGGAACTGTAAATTGAAGATACT 58.542 34.615 0.00 0.00 0.00 2.12
537 542 7.681939 TGTGGGAACTGTAAATTGAAGATAC 57.318 36.000 0.00 0.00 0.00 2.24
538 543 8.160765 TCTTGTGGGAACTGTAAATTGAAGATA 58.839 33.333 0.00 0.00 0.00 1.98
539 544 7.004086 TCTTGTGGGAACTGTAAATTGAAGAT 58.996 34.615 0.00 0.00 0.00 2.40
540 545 6.361433 TCTTGTGGGAACTGTAAATTGAAGA 58.639 36.000 0.00 0.00 0.00 2.87
541 546 6.633500 TCTTGTGGGAACTGTAAATTGAAG 57.367 37.500 0.00 0.00 0.00 3.02
542 547 6.378564 TGTTCTTGTGGGAACTGTAAATTGAA 59.621 34.615 8.47 0.00 44.02 2.69
564 569 9.371136 CATGTATACTTAACTCATGTGTCTGTT 57.629 33.333 4.17 0.00 33.53 3.16
599 604 8.220559 AGGCAAGTTCAGTAAATATGTATCCAT 58.779 33.333 0.00 0.00 34.97 3.41
603 608 7.497595 TCGAGGCAAGTTCAGTAAATATGTAT 58.502 34.615 0.00 0.00 0.00 2.29
605 610 5.730550 TCGAGGCAAGTTCAGTAAATATGT 58.269 37.500 0.00 0.00 0.00 2.29
676 681 1.964223 AGTGAGTGATTGGTCGAGTGT 59.036 47.619 0.00 0.00 0.00 3.55
679 684 6.137794 AGTATTAGTGAGTGATTGGTCGAG 57.862 41.667 0.00 0.00 0.00 4.04
704 709 8.693542 TGCAACTAGAACATGATCATATATCG 57.306 34.615 8.15 0.00 0.00 2.92
711 716 4.154737 GCACTTGCAACTAGAACATGATCA 59.845 41.667 0.00 0.00 41.59 2.92
803 808 9.423061 GCAACTGAACCTGACATTATAATTTTT 57.577 29.630 0.00 0.00 0.00 1.94
804 809 8.584157 TGCAACTGAACCTGACATTATAATTTT 58.416 29.630 0.00 0.00 0.00 1.82
859 864 2.734492 GCGTAGTAAATCACGGTGCTCT 60.734 50.000 2.51 0.27 38.57 4.09
934 939 1.069296 CATTTCGCTGAAACTTGCCGA 60.069 47.619 5.99 0.00 34.23 5.54
936 941 1.000274 ACCATTTCGCTGAAACTTGCC 60.000 47.619 5.99 0.00 34.23 4.52
951 956 2.350522 GATCTGCGTCTTGTGACCATT 58.649 47.619 0.00 0.00 39.94 3.16
956 961 4.169102 GCGATCTGCGTCTTGTGA 57.831 55.556 0.00 0.00 43.41 3.58
975 980 5.163913 GCTCAATTATGCTAGTGGCTAATCG 60.164 44.000 0.00 0.00 42.39 3.34
1063 1068 1.004185 GCAGATGAGCATTGCAGTACG 60.004 52.381 11.91 0.00 37.75 3.67
1090 1095 1.304713 CACTGGGGCAAAGGCTCAT 60.305 57.895 0.00 0.00 44.63 2.90
1113 1118 2.125106 GCGGGTGTGGCTAAGGAG 60.125 66.667 0.00 0.00 0.00 3.69
1133 1138 4.067896 GTCGGATTCTGATGCATTATGGT 58.932 43.478 0.00 0.00 0.00 3.55
1161 1166 1.209504 GACCTAACACATAGCAGGGCA 59.790 52.381 0.00 0.00 36.11 5.36
1200 1205 1.827344 CTCCATGAGTGTAGTGCTCCA 59.173 52.381 0.00 0.00 32.31 3.86
1215 1220 1.742768 GACGGATTCGCTCCTCCAT 59.257 57.895 0.00 0.00 42.47 3.41
1266 1271 4.710695 CGACCTGCGTGGCGTGTA 62.711 66.667 0.00 0.00 40.22 2.90
1297 1302 6.348786 CCAGTAATGTTCAGTGATTCAAGGTG 60.349 42.308 0.00 0.00 0.00 4.00
1305 1310 9.113838 GATATTTGTCCAGTAATGTTCAGTGAT 57.886 33.333 0.00 0.00 0.00 3.06
1323 1328 4.098960 CCTGCAATGCAAGGAGATATTTGT 59.901 41.667 9.92 0.00 38.41 2.83
1363 1368 8.798859 ATATGGTTATCAGCTATGTGAATTCC 57.201 34.615 2.27 0.00 0.00 3.01
1387 1392 0.839946 GGAGGTATGTGGCCACTGAT 59.160 55.000 34.75 23.48 0.00 2.90
1392 1397 0.042581 TCTCAGGAGGTATGTGGCCA 59.957 55.000 0.00 0.00 0.00 5.36
1417 1422 1.001597 GTATCTGAGTCGGGTTAGGCG 60.002 57.143 0.00 0.00 0.00 5.52
1422 1427 2.496470 GTTGAGGTATCTGAGTCGGGTT 59.504 50.000 0.00 0.00 0.00 4.11
1553 1558 2.158696 AGGCTGGAACAAGAGGATATGC 60.159 50.000 0.00 0.00 38.70 3.14
1596 1601 7.027874 AGGGATTTCACCTTCAATGTAGTTA 57.972 36.000 0.00 0.00 33.64 2.24
1601 1606 3.075882 TGGAGGGATTTCACCTTCAATGT 59.924 43.478 0.00 0.00 40.66 2.71
1670 1675 1.068541 GGATGGTTCCGTTGAGTTTGC 60.069 52.381 0.00 0.00 30.72 3.68
1721 1726 5.385198 TGTTGCTAGGGAGAAACAGAAATT 58.615 37.500 0.00 0.00 44.96 1.82
1752 1757 0.036732 AAGACGAAGGAATGCTGCCA 59.963 50.000 0.00 0.00 0.00 4.92
1776 1781 1.195115 TGGACAGTGATGGGCTACTC 58.805 55.000 0.00 0.00 0.00 2.59
1841 1846 6.473397 AGAGTGAAGAAGAATTTGCTAACG 57.527 37.500 0.00 0.00 0.00 3.18
1911 1916 2.684881 AGATGGGCTATCAAAAAGCGTG 59.315 45.455 13.63 0.00 41.03 5.34
1914 1919 4.400567 ACAAGAGATGGGCTATCAAAAAGC 59.599 41.667 13.63 0.00 38.31 3.51
1925 1930 4.755266 TCTAAGGTAACAAGAGATGGGC 57.245 45.455 0.00 0.00 41.41 5.36
2025 2030 4.552166 TTCTCCTGAAAGCTTGTTTTCG 57.448 40.909 0.00 0.00 39.39 3.46
2034 2039 2.162408 CGGTGGAATTTCTCCTGAAAGC 59.838 50.000 3.39 0.00 45.64 3.51
2055 2060 2.289820 GGACGAAAAGTTTCCCAGTGTC 59.710 50.000 0.00 0.53 33.68 3.67
2061 2066 3.682696 ACATAGGGACGAAAAGTTTCCC 58.317 45.455 2.49 2.49 37.20 3.97
2073 2078 3.073274 AGCAACAAGGAACATAGGGAC 57.927 47.619 0.00 0.00 0.00 4.46
2074 2079 3.420893 CAAGCAACAAGGAACATAGGGA 58.579 45.455 0.00 0.00 0.00 4.20
2166 2171 6.414732 TGCACCAGACAAGTAATTATAAGCT 58.585 36.000 0.00 0.00 0.00 3.74
2175 2180 2.171659 TGGAACTGCACCAGACAAGTAA 59.828 45.455 0.00 0.00 35.18 2.24
2203 2208 3.439293 CGAGAGATGCGACTGTGTAAAT 58.561 45.455 0.00 0.00 0.00 1.40
2224 2229 1.745653 GACACCAAGGCCAAGATAAGC 59.254 52.381 5.01 0.00 0.00 3.09
2271 2276 3.261580 TGGAAGAGTGTATGCAATGTCG 58.738 45.455 0.00 0.00 0.00 4.35
2490 2495 0.987294 AGGCTGGTACTGAGCACAAT 59.013 50.000 16.16 0.90 38.27 2.71
2523 2528 8.023021 TCTGGTTGTTATCTAGATACATTGCT 57.977 34.615 12.12 0.00 0.00 3.91
2535 2540 6.484288 TGTTCCATGAATCTGGTTGTTATCT 58.516 36.000 0.00 0.00 37.57 1.98
2586 2591 5.613358 AATACAACAACTGTAAGCTGCTC 57.387 39.130 1.00 0.00 43.75 4.26
2610 2615 6.183361 TGGTTCCAGTAAATCTGTTCTCTGAA 60.183 38.462 0.00 0.00 42.19 3.02
2683 2688 1.900486 CCCTGAGAGTAAGTTTCCCGT 59.100 52.381 0.00 0.00 0.00 5.28
2763 2768 6.448369 TTTGGGATCTCTCCAGAAAGTTTA 57.552 37.500 0.00 0.00 44.08 2.01
2847 2852 2.100916 TGCTAAGCTCGAAGGTATGGAC 59.899 50.000 0.00 0.00 0.00 4.02
2929 2934 2.724672 AGGATATAGACAGGAGCCCAGA 59.275 50.000 0.00 0.00 0.00 3.86
2985 2990 5.742063 TCAGATGATATGGATCCATTGAGC 58.258 41.667 31.70 18.23 37.82 4.26
3299 3304 8.752187 ACACCTTACTTGAATTGATAAATGCAT 58.248 29.630 0.00 0.00 0.00 3.96
3708 3713 8.514330 ACACCTCACATTCAGTTAAAAAGTTA 57.486 30.769 0.00 0.00 0.00 2.24
3888 3893 1.254284 CGAGACTCAGTGGCCTCCTT 61.254 60.000 3.32 0.00 0.00 3.36
3939 3947 0.249657 GGAGATAGTCCAAGGCTGCG 60.250 60.000 0.00 0.00 46.10 5.18
3972 3980 3.593442 TCACAATGAACCAAAGGAGGT 57.407 42.857 0.00 0.00 45.91 3.85
4170 4178 6.952773 AAGGCAGTTTATGTTCAACAACTA 57.047 33.333 0.00 0.00 33.17 2.24
4195 4203 4.499019 GCTGCAGCACTTGTTTTTAGGTTA 60.499 41.667 33.36 0.00 41.59 2.85
4213 4221 2.936202 AGGAAAGTTTCTGAAGCTGCA 58.064 42.857 15.05 0.00 0.00 4.41
4318 4326 0.596577 TGTAGACGTCACCTGCAGTC 59.403 55.000 19.50 2.97 0.00 3.51
4398 4406 1.001974 CGTGAAGGTTCAGTCCATCCA 59.998 52.381 0.00 0.00 37.98 3.41
4417 4425 2.898729 ATGCAGAGACTACCAATCCG 57.101 50.000 0.00 0.00 0.00 4.18
4521 4529 2.032071 CAACCACCAGACGGTCCC 59.968 66.667 4.14 0.00 44.71 4.46
4540 4548 7.523219 CAAACTGCATGATACAATTTTGCATT 58.477 30.769 0.00 0.00 41.95 3.56
4662 4670 0.585357 GACTCAGCAGTGCAGTGTTG 59.415 55.000 27.14 27.14 30.63 3.33
4712 4720 0.039035 GGGCATAACACACCTTGGGA 59.961 55.000 0.00 0.00 0.00 4.37
4730 4738 8.306680 TCTTAAGTATCAGAAACAAAACTCGG 57.693 34.615 1.63 0.00 0.00 4.63
4743 4751 9.829507 AAGAACTTGGATGATCTTAAGTATCAG 57.170 33.333 17.08 10.57 36.82 2.90
4783 4791 6.019801 CGTAATTAGAATGACAAAGGAGACGG 60.020 42.308 0.00 0.00 0.00 4.79
4908 4916 6.872628 ATGACACAAATCCTGCATATACAG 57.127 37.500 0.00 0.00 37.42 2.74
4943 4951 4.084589 TCGACATATGCATTGCGAATACAC 60.085 41.667 3.54 0.00 0.00 2.90
4944 4952 4.054671 TCGACATATGCATTGCGAATACA 58.945 39.130 3.54 0.00 0.00 2.29
4950 4958 3.590720 TTCTTCGACATATGCATTGCG 57.409 42.857 3.54 10.88 0.00 4.85
4979 4987 8.503196 TGTAGTGTGCTATTGTTTCTGTATTTG 58.497 33.333 0.00 0.00 0.00 2.32
4981 4989 8.615878 TTGTAGTGTGCTATTGTTTCTGTATT 57.384 30.769 0.00 0.00 0.00 1.89
4989 4997 8.184192 GCATATTTCTTGTAGTGTGCTATTGTT 58.816 33.333 0.00 0.00 0.00 2.83
4991 4999 7.923888 AGCATATTTCTTGTAGTGTGCTATTG 58.076 34.615 0.00 0.00 39.64 1.90
4992 5000 9.784531 ATAGCATATTTCTTGTAGTGTGCTATT 57.215 29.630 9.90 0.00 46.57 1.73
5115 5124 2.882137 AGAGAAGGTCGCTATAGTCAGC 59.118 50.000 0.84 0.00 38.23 4.26
5146 5155 1.798283 TTGGTCATAAACGTCCACGG 58.202 50.000 3.81 0.00 44.95 4.94
5227 5236 2.270257 TGCCACATCAGCTTGCCAC 61.270 57.895 0.00 0.00 0.00 5.01
5406 5444 6.534634 AGTGGGACCAGCTTGAATATATAAC 58.465 40.000 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.