Multiple sequence alignment - TraesCS2B01G046500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G046500 chr2B 100.000 5622 0 0 1 5622 23113005 23118626 0.000000e+00 10382.0
1 TraesCS2B01G046500 chr2A 91.146 1954 116 29 982 2908 14808961 14810884 0.000000e+00 2597.0
2 TraesCS2B01G046500 chr2A 95.765 1346 51 6 2909 4251 14810973 14812315 0.000000e+00 2165.0
3 TraesCS2B01G046500 chr2A 93.179 689 36 6 4264 4952 14812392 14813069 0.000000e+00 1002.0
4 TraesCS2B01G046500 chr2A 85.390 616 72 12 4943 5546 14813230 14813839 1.720000e-174 623.0
5 TraesCS2B01G046500 chr2A 84.182 373 29 13 407 763 14808148 14808506 9.030000e-88 335.0
6 TraesCS2B01G046500 chr2A 87.629 97 8 4 159 254 14808056 14808149 5.950000e-20 110.0
7 TraesCS2B01G046500 chr2A 97.959 49 1 0 5544 5592 7784810 7784858 1.000000e-12 86.1
8 TraesCS2B01G046500 chr2A 97.826 46 1 0 4221 4266 14812316 14812361 4.670000e-11 80.5
9 TraesCS2B01G046500 chr2D 94.888 1291 49 8 2909 4196 12688408 12689684 0.000000e+00 2002.0
10 TraesCS2B01G046500 chr2D 89.855 1311 83 24 421 1715 12685936 12687212 0.000000e+00 1639.0
11 TraesCS2B01G046500 chr2D 91.815 1124 55 16 1788 2908 12687230 12688319 0.000000e+00 1531.0
12 TraesCS2B01G046500 chr2D 91.387 685 32 15 4280 4952 12689802 12690471 0.000000e+00 913.0
13 TraesCS2B01G046500 chr2D 85.569 589 53 18 4974 5550 12690657 12691225 6.270000e-164 588.0
14 TraesCS2B01G046500 chr2D 93.056 144 8 1 252 395 213176322 213176463 5.710000e-50 209.0
15 TraesCS2B01G046500 chr2D 92.361 144 9 1 252 395 534634853 534634994 2.660000e-48 204.0
16 TraesCS2B01G046500 chr2D 88.235 68 5 3 1722 1788 256728992 256729057 1.680000e-10 78.7
17 TraesCS2B01G046500 chr3B 93.793 145 4 2 252 395 447011115 447010975 4.410000e-51 213.0
18 TraesCS2B01G046500 chr5D 92.568 148 7 1 246 393 560061340 560061483 5.710000e-50 209.0
19 TraesCS2B01G046500 chr5D 91.781 146 8 1 248 393 69953715 69953574 3.430000e-47 200.0
20 TraesCS2B01G046500 chr6D 93.617 141 5 1 253 393 389700541 389700677 2.050000e-49 207.0
21 TraesCS2B01G046500 chr6D 94.828 58 3 0 5544 5601 4701368 4701311 2.160000e-14 91.6
22 TraesCS2B01G046500 chr6D 98.000 50 1 0 5544 5593 464673649 464673698 2.790000e-13 87.9
23 TraesCS2B01G046500 chr7D 92.361 144 9 1 252 395 254028404 254028545 2.660000e-48 204.0
24 TraesCS2B01G046500 chr7D 94.737 57 3 0 5544 5600 124168179 124168123 7.760000e-14 89.8
25 TraesCS2B01G046500 chr7D 94.737 57 3 0 5536 5592 631542823 631542767 7.760000e-14 89.8
26 TraesCS2B01G046500 chr7D 93.333 60 2 2 5544 5601 570656755 570656814 2.790000e-13 87.9
27 TraesCS2B01G046500 chr4B 92.361 144 9 1 254 397 378931193 378931052 2.660000e-48 204.0
28 TraesCS2B01G046500 chr1B 92.958 142 6 1 252 393 519817972 519817835 2.660000e-48 204.0
29 TraesCS2B01G046500 chr6B 96.429 56 2 0 5544 5599 343624695 343624640 6.000000e-15 93.5
30 TraesCS2B01G046500 chr7B 93.443 61 3 1 5544 5603 719465252 719465192 7.760000e-14 89.8
31 TraesCS2B01G046500 chr3D 93.333 60 4 0 5544 5603 152672625 152672684 7.760000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G046500 chr2B 23113005 23118626 5621 False 10382.0 10382 100.0000 1 5622 1 chr2B.!!$F1 5621
1 TraesCS2B01G046500 chr2A 14808056 14813839 5783 False 987.5 2597 90.7310 159 5546 7 chr2A.!!$F2 5387
2 TraesCS2B01G046500 chr2D 12685936 12691225 5289 False 1334.6 2002 90.7028 421 5550 5 chr2D.!!$F4 5129

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.036306 AAAGTGTGACCCGACCCATC 59.964 55.000 0.0 0.0 0.00 3.51 F
1480 1733 0.531974 TCACCCGTCTGCTTGTTCAC 60.532 55.000 0.0 0.0 0.00 3.18 F
2334 2624 1.136891 GGTGGTTATTGGAGCAATGCC 59.863 52.381 0.0 0.0 35.54 4.40 F
3611 3992 0.029834 GGGCTGATGCTGTATTTGCG 59.970 55.000 0.0 0.0 39.59 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 2065 0.107643 TGGCCGTGAACTTGTGATGA 59.892 50.000 0.00 0.00 0.00 2.92 R
2637 2927 2.288729 AGAAAAACGACCGTTAACTGGC 59.711 45.455 8.28 4.75 37.35 4.85 R
4016 4398 0.256752 TCTCTGTTGGATGGCCCATG 59.743 55.000 0.00 0.00 46.10 3.66 R
5416 6064 0.032217 TTGGCAATCCATTCCCTCCC 60.032 55.000 0.00 0.00 43.05 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.545105 TTGTATTTTGATTTCATGTTTTGCTCT 57.455 25.926 0.00 0.00 0.00 4.09
28 29 9.195411 TGTATTTTGATTTCATGTTTTGCTCTC 57.805 29.630 0.00 0.00 0.00 3.20
29 30 9.415544 GTATTTTGATTTCATGTTTTGCTCTCT 57.584 29.630 0.00 0.00 0.00 3.10
30 31 7.703298 TTTTGATTTCATGTTTTGCTCTCTG 57.297 32.000 0.00 0.00 0.00 3.35
31 32 5.381174 TGATTTCATGTTTTGCTCTCTGG 57.619 39.130 0.00 0.00 0.00 3.86
32 33 4.828939 TGATTTCATGTTTTGCTCTCTGGT 59.171 37.500 0.00 0.00 0.00 4.00
33 34 4.572985 TTTCATGTTTTGCTCTCTGGTG 57.427 40.909 0.00 0.00 0.00 4.17
34 35 3.213206 TCATGTTTTGCTCTCTGGTGT 57.787 42.857 0.00 0.00 0.00 4.16
35 36 2.880268 TCATGTTTTGCTCTCTGGTGTG 59.120 45.455 0.00 0.00 0.00 3.82
36 37 1.679139 TGTTTTGCTCTCTGGTGTGG 58.321 50.000 0.00 0.00 0.00 4.17
37 38 1.064758 TGTTTTGCTCTCTGGTGTGGT 60.065 47.619 0.00 0.00 0.00 4.16
38 39 1.334869 GTTTTGCTCTCTGGTGTGGTG 59.665 52.381 0.00 0.00 0.00 4.17
39 40 0.546122 TTTGCTCTCTGGTGTGGTGT 59.454 50.000 0.00 0.00 0.00 4.16
40 41 0.106708 TTGCTCTCTGGTGTGGTGTC 59.893 55.000 0.00 0.00 0.00 3.67
41 42 1.048160 TGCTCTCTGGTGTGGTGTCA 61.048 55.000 0.00 0.00 0.00 3.58
42 43 0.601311 GCTCTCTGGTGTGGTGTCAC 60.601 60.000 0.00 0.00 43.87 3.67
43 44 1.043816 CTCTCTGGTGTGGTGTCACT 58.956 55.000 2.35 0.00 43.94 3.41
44 45 0.752658 TCTCTGGTGTGGTGTCACTG 59.247 55.000 2.35 0.00 43.94 3.66
45 46 0.465705 CTCTGGTGTGGTGTCACTGT 59.534 55.000 2.35 0.00 43.94 3.55
46 47 0.177836 TCTGGTGTGGTGTCACTGTG 59.822 55.000 0.17 0.17 43.94 3.66
47 48 0.107703 CTGGTGTGGTGTCACTGTGT 60.108 55.000 7.79 0.00 43.94 3.72
48 49 0.107897 TGGTGTGGTGTCACTGTGTC 60.108 55.000 7.79 2.66 43.94 3.67
49 50 0.107897 GGTGTGGTGTCACTGTGTCA 60.108 55.000 7.79 5.61 43.94 3.58
50 51 1.006832 GTGTGGTGTCACTGTGTCAC 58.993 55.000 23.77 23.77 43.94 3.67
51 52 0.610687 TGTGGTGTCACTGTGTCACA 59.389 50.000 29.50 23.05 43.94 3.58
52 53 1.006832 GTGGTGTCACTGTGTCACAC 58.993 55.000 29.50 24.39 37.98 3.82
53 54 0.610687 TGGTGTCACTGTGTCACACA 59.389 50.000 29.50 23.27 41.93 3.72
62 63 2.203001 TGTCACACAGGCACACCG 60.203 61.111 0.00 0.00 42.76 4.94
63 64 2.972505 GTCACACAGGCACACCGG 60.973 66.667 0.00 0.00 42.76 5.28
64 65 3.475494 TCACACAGGCACACCGGT 61.475 61.111 0.00 0.00 46.26 5.28
65 66 2.515991 CACACAGGCACACCGGTT 60.516 61.111 2.97 0.00 42.24 4.44
66 67 2.203153 ACACAGGCACACCGGTTC 60.203 61.111 2.97 0.00 42.24 3.62
67 68 2.111043 CACAGGCACACCGGTTCT 59.889 61.111 2.97 0.00 42.24 3.01
68 69 1.369692 CACAGGCACACCGGTTCTA 59.630 57.895 2.97 0.00 42.24 2.10
69 70 0.250124 CACAGGCACACCGGTTCTAA 60.250 55.000 2.97 0.00 42.24 2.10
70 71 0.690762 ACAGGCACACCGGTTCTAAT 59.309 50.000 2.97 0.00 42.24 1.73
71 72 1.073284 ACAGGCACACCGGTTCTAATT 59.927 47.619 2.97 0.00 42.24 1.40
72 73 2.303600 ACAGGCACACCGGTTCTAATTA 59.696 45.455 2.97 0.00 42.24 1.40
73 74 3.054655 ACAGGCACACCGGTTCTAATTAT 60.055 43.478 2.97 0.00 42.24 1.28
74 75 4.162698 ACAGGCACACCGGTTCTAATTATA 59.837 41.667 2.97 0.00 42.24 0.98
75 76 4.510340 CAGGCACACCGGTTCTAATTATAC 59.490 45.833 2.97 0.00 42.76 1.47
76 77 4.162698 AGGCACACCGGTTCTAATTATACA 59.837 41.667 2.97 0.00 42.76 2.29
77 78 4.510340 GGCACACCGGTTCTAATTATACAG 59.490 45.833 2.97 0.00 0.00 2.74
78 79 5.353938 GCACACCGGTTCTAATTATACAGA 58.646 41.667 2.97 0.00 0.00 3.41
79 80 5.233689 GCACACCGGTTCTAATTATACAGAC 59.766 44.000 2.97 0.00 0.00 3.51
80 81 5.457799 CACACCGGTTCTAATTATACAGACG 59.542 44.000 2.97 0.00 0.00 4.18
81 82 4.443394 CACCGGTTCTAATTATACAGACGC 59.557 45.833 2.97 0.00 0.00 5.19
82 83 3.667261 CCGGTTCTAATTATACAGACGCG 59.333 47.826 3.53 3.53 0.00 6.01
83 84 4.285292 CGGTTCTAATTATACAGACGCGT 58.715 43.478 13.85 13.85 0.00 6.01
84 85 4.145928 CGGTTCTAATTATACAGACGCGTG 59.854 45.833 20.70 5.63 0.00 5.34
85 86 4.085210 GGTTCTAATTATACAGACGCGTGC 60.085 45.833 20.70 8.74 0.00 5.34
86 87 4.563337 TCTAATTATACAGACGCGTGCT 57.437 40.909 20.70 11.30 0.00 4.40
87 88 4.534168 TCTAATTATACAGACGCGTGCTC 58.466 43.478 20.70 1.12 0.00 4.26
88 89 2.135664 ATTATACAGACGCGTGCTCC 57.864 50.000 20.70 0.63 0.00 4.70
89 90 0.101759 TTATACAGACGCGTGCTCCC 59.898 55.000 20.70 0.13 0.00 4.30
90 91 2.055310 TATACAGACGCGTGCTCCCG 62.055 60.000 20.70 4.80 0.00 5.14
93 94 4.295119 AGACGCGTGCTCCCGTTT 62.295 61.111 20.70 0.00 37.87 3.60
94 95 2.431260 GACGCGTGCTCCCGTTTA 60.431 61.111 20.70 0.00 37.87 2.01
95 96 2.023223 GACGCGTGCTCCCGTTTAA 61.023 57.895 20.70 0.00 37.87 1.52
96 97 1.559149 GACGCGTGCTCCCGTTTAAA 61.559 55.000 20.70 0.00 37.87 1.52
97 98 1.131826 CGCGTGCTCCCGTTTAAAG 59.868 57.895 0.00 0.00 0.00 1.85
98 99 1.562575 CGCGTGCTCCCGTTTAAAGT 61.563 55.000 0.00 0.00 0.00 2.66
99 100 0.110373 GCGTGCTCCCGTTTAAAGTG 60.110 55.000 0.00 0.00 0.00 3.16
100 101 1.223187 CGTGCTCCCGTTTAAAGTGT 58.777 50.000 0.00 0.00 0.00 3.55
101 102 1.070175 CGTGCTCCCGTTTAAAGTGTG 60.070 52.381 0.00 0.00 0.00 3.82
102 103 2.215196 GTGCTCCCGTTTAAAGTGTGA 58.785 47.619 0.00 0.00 0.00 3.58
103 104 2.032290 GTGCTCCCGTTTAAAGTGTGAC 60.032 50.000 0.00 0.00 0.00 3.67
104 105 1.534163 GCTCCCGTTTAAAGTGTGACC 59.466 52.381 0.00 0.00 0.00 4.02
105 106 2.148768 CTCCCGTTTAAAGTGTGACCC 58.851 52.381 0.00 0.00 0.00 4.46
106 107 0.869730 CCCGTTTAAAGTGTGACCCG 59.130 55.000 0.00 0.00 0.00 5.28
107 108 1.540797 CCCGTTTAAAGTGTGACCCGA 60.541 52.381 0.00 0.00 0.00 5.14
108 109 1.528161 CCGTTTAAAGTGTGACCCGAC 59.472 52.381 0.00 0.00 0.00 4.79
109 110 1.528161 CGTTTAAAGTGTGACCCGACC 59.472 52.381 0.00 0.00 0.00 4.79
110 111 1.875514 GTTTAAAGTGTGACCCGACCC 59.124 52.381 0.00 0.00 0.00 4.46
111 112 1.129917 TTAAAGTGTGACCCGACCCA 58.870 50.000 0.00 0.00 0.00 4.51
112 113 1.354101 TAAAGTGTGACCCGACCCAT 58.646 50.000 0.00 0.00 0.00 4.00
113 114 0.036306 AAAGTGTGACCCGACCCATC 59.964 55.000 0.00 0.00 0.00 3.51
114 115 1.125093 AAGTGTGACCCGACCCATCA 61.125 55.000 0.00 0.00 0.00 3.07
115 116 0.909610 AGTGTGACCCGACCCATCAT 60.910 55.000 0.00 0.00 0.00 2.45
116 117 0.828022 GTGTGACCCGACCCATCATA 59.172 55.000 0.00 0.00 0.00 2.15
117 118 1.208535 GTGTGACCCGACCCATCATAA 59.791 52.381 0.00 0.00 0.00 1.90
118 119 1.909986 TGTGACCCGACCCATCATAAA 59.090 47.619 0.00 0.00 0.00 1.40
119 120 2.507886 TGTGACCCGACCCATCATAAAT 59.492 45.455 0.00 0.00 0.00 1.40
120 121 3.053991 TGTGACCCGACCCATCATAAATT 60.054 43.478 0.00 0.00 0.00 1.82
121 122 3.951680 GTGACCCGACCCATCATAAATTT 59.048 43.478 0.00 0.00 0.00 1.82
122 123 5.127491 GTGACCCGACCCATCATAAATTTA 58.873 41.667 0.00 0.00 0.00 1.40
123 124 5.238650 GTGACCCGACCCATCATAAATTTAG 59.761 44.000 3.94 0.00 0.00 1.85
124 125 5.104277 TGACCCGACCCATCATAAATTTAGT 60.104 40.000 3.94 0.00 0.00 2.24
125 126 6.099990 TGACCCGACCCATCATAAATTTAGTA 59.900 38.462 3.94 0.00 0.00 1.82
126 127 6.902408 ACCCGACCCATCATAAATTTAGTAA 58.098 36.000 3.94 0.00 0.00 2.24
127 128 7.348033 ACCCGACCCATCATAAATTTAGTAAA 58.652 34.615 3.94 0.00 0.00 2.01
128 129 8.002459 ACCCGACCCATCATAAATTTAGTAAAT 58.998 33.333 2.10 2.10 0.00 1.40
129 130 9.509956 CCCGACCCATCATAAATTTAGTAAATA 57.490 33.333 8.54 0.00 0.00 1.40
142 143 9.498176 AAATTTAGTAAATACGACCAACACTCT 57.502 29.630 8.54 0.00 0.00 3.24
143 144 7.878477 TTTAGTAAATACGACCAACACTCTG 57.122 36.000 0.00 0.00 0.00 3.35
144 145 4.243270 AGTAAATACGACCAACACTCTGC 58.757 43.478 0.00 0.00 0.00 4.26
145 146 1.710013 AATACGACCAACACTCTGCG 58.290 50.000 0.00 0.00 0.00 5.18
146 147 0.736325 ATACGACCAACACTCTGCGC 60.736 55.000 0.00 0.00 0.00 6.09
147 148 3.767230 CGACCAACACTCTGCGCG 61.767 66.667 0.00 0.00 0.00 6.86
148 149 4.077188 GACCAACACTCTGCGCGC 62.077 66.667 27.26 27.26 0.00 6.86
151 152 3.782244 CAACACTCTGCGCGCCTC 61.782 66.667 30.77 0.92 0.00 4.70
163 164 4.821589 CGCCTCCGCCCTTCAGAC 62.822 72.222 0.00 0.00 0.00 3.51
164 165 4.821589 GCCTCCGCCCTTCAGACG 62.822 72.222 0.00 0.00 0.00 4.18
165 166 3.068691 CCTCCGCCCTTCAGACGA 61.069 66.667 0.00 0.00 0.00 4.20
166 167 2.182030 CTCCGCCCTTCAGACGAC 59.818 66.667 0.00 0.00 0.00 4.34
167 168 2.599281 TCCGCCCTTCAGACGACA 60.599 61.111 0.00 0.00 0.00 4.35
168 169 1.949847 CTCCGCCCTTCAGACGACAT 61.950 60.000 0.00 0.00 0.00 3.06
169 170 1.079127 CCGCCCTTCAGACGACATT 60.079 57.895 0.00 0.00 0.00 2.71
170 171 0.673644 CCGCCCTTCAGACGACATTT 60.674 55.000 0.00 0.00 0.00 2.32
171 172 1.404986 CCGCCCTTCAGACGACATTTA 60.405 52.381 0.00 0.00 0.00 1.40
172 173 2.343101 CGCCCTTCAGACGACATTTAA 58.657 47.619 0.00 0.00 0.00 1.52
176 177 5.154222 GCCCTTCAGACGACATTTAAAAAG 58.846 41.667 0.00 0.00 0.00 2.27
197 198 5.766150 AGAAAATCATGACCAAACGACAA 57.234 34.783 0.00 0.00 0.00 3.18
199 200 5.977129 AGAAAATCATGACCAAACGACAAAC 59.023 36.000 0.00 0.00 0.00 2.93
201 202 3.684103 TCATGACCAAACGACAAACAC 57.316 42.857 0.00 0.00 0.00 3.32
205 206 5.529430 TCATGACCAAACGACAAACACTATT 59.471 36.000 0.00 0.00 0.00 1.73
238 239 1.932511 CACAAACCAAACACACCATGC 59.067 47.619 0.00 0.00 0.00 4.06
255 256 3.555527 ATGCATGACATGTCAGCTACT 57.444 42.857 31.72 18.04 43.61 2.57
256 257 2.897436 TGCATGACATGTCAGCTACTC 58.103 47.619 31.72 19.76 43.61 2.59
257 258 2.498885 TGCATGACATGTCAGCTACTCT 59.501 45.455 31.72 16.90 43.61 3.24
258 259 3.122297 GCATGACATGTCAGCTACTCTC 58.878 50.000 30.63 11.33 43.61 3.20
259 260 3.181477 GCATGACATGTCAGCTACTCTCT 60.181 47.826 30.63 10.52 43.61 3.10
260 261 4.609947 CATGACATGTCAGCTACTCTCTC 58.390 47.826 30.63 0.09 43.61 3.20
261 262 3.020274 TGACATGTCAGCTACTCTCTCC 58.980 50.000 24.56 0.00 34.14 3.71
262 263 2.020720 ACATGTCAGCTACTCTCTCCG 58.979 52.381 0.00 0.00 0.00 4.63
263 264 2.020720 CATGTCAGCTACTCTCTCCGT 58.979 52.381 0.00 0.00 0.00 4.69
264 265 2.201921 TGTCAGCTACTCTCTCCGTT 57.798 50.000 0.00 0.00 0.00 4.44
265 266 2.085320 TGTCAGCTACTCTCTCCGTTC 58.915 52.381 0.00 0.00 0.00 3.95
266 267 1.402613 GTCAGCTACTCTCTCCGTTCC 59.597 57.143 0.00 0.00 0.00 3.62
267 268 1.282447 TCAGCTACTCTCTCCGTTCCT 59.718 52.381 0.00 0.00 0.00 3.36
268 269 2.504585 TCAGCTACTCTCTCCGTTCCTA 59.495 50.000 0.00 0.00 0.00 2.94
269 270 3.054582 TCAGCTACTCTCTCCGTTCCTAA 60.055 47.826 0.00 0.00 0.00 2.69
270 271 3.695060 CAGCTACTCTCTCCGTTCCTAAA 59.305 47.826 0.00 0.00 0.00 1.85
271 272 4.339814 CAGCTACTCTCTCCGTTCCTAAAT 59.660 45.833 0.00 0.00 0.00 1.40
272 273 5.531659 CAGCTACTCTCTCCGTTCCTAAATA 59.468 44.000 0.00 0.00 0.00 1.40
273 274 6.207810 CAGCTACTCTCTCCGTTCCTAAATAT 59.792 42.308 0.00 0.00 0.00 1.28
274 275 6.778559 AGCTACTCTCTCCGTTCCTAAATATT 59.221 38.462 0.00 0.00 0.00 1.28
275 276 7.288158 AGCTACTCTCTCCGTTCCTAAATATTT 59.712 37.037 5.89 5.89 0.00 1.40
276 277 7.382759 GCTACTCTCTCCGTTCCTAAATATTTG 59.617 40.741 11.05 1.40 0.00 2.32
277 278 7.184067 ACTCTCTCCGTTCCTAAATATTTGT 57.816 36.000 11.05 0.00 0.00 2.83
278 279 7.266400 ACTCTCTCCGTTCCTAAATATTTGTC 58.734 38.462 11.05 0.00 0.00 3.18
279 280 7.124448 ACTCTCTCCGTTCCTAAATATTTGTCT 59.876 37.037 11.05 0.00 0.00 3.41
280 281 7.848128 TCTCTCCGTTCCTAAATATTTGTCTT 58.152 34.615 11.05 0.00 0.00 3.01
281 282 8.319146 TCTCTCCGTTCCTAAATATTTGTCTTT 58.681 33.333 11.05 0.00 0.00 2.52
282 283 8.857694 TCTCCGTTCCTAAATATTTGTCTTTT 57.142 30.769 11.05 0.00 0.00 2.27
283 284 9.292195 TCTCCGTTCCTAAATATTTGTCTTTTT 57.708 29.630 11.05 0.00 0.00 1.94
310 311 9.725019 AGAGATTTCAACAAATGACTACATACA 57.275 29.630 0.00 0.00 37.92 2.29
311 312 9.979270 GAGATTTCAACAAATGACTACATACAG 57.021 33.333 0.00 0.00 37.92 2.74
312 313 9.725019 AGATTTCAACAAATGACTACATACAGA 57.275 29.630 0.00 0.00 37.92 3.41
313 314 9.979270 GATTTCAACAAATGACTACATACAGAG 57.021 33.333 0.00 0.00 37.92 3.35
314 315 6.968131 TCAACAAATGACTACATACAGAGC 57.032 37.500 0.00 0.00 35.50 4.09
315 316 6.463360 TCAACAAATGACTACATACAGAGCA 58.537 36.000 0.00 0.00 35.50 4.26
316 317 6.934083 TCAACAAATGACTACATACAGAGCAA 59.066 34.615 0.00 0.00 35.50 3.91
317 318 6.727824 ACAAATGACTACATACAGAGCAAC 57.272 37.500 0.00 0.00 35.50 4.17
318 319 6.230472 ACAAATGACTACATACAGAGCAACA 58.770 36.000 0.00 0.00 35.50 3.33
319 320 6.881065 ACAAATGACTACATACAGAGCAACAT 59.119 34.615 0.00 0.00 35.50 2.71
320 321 6.915544 AATGACTACATACAGAGCAACATG 57.084 37.500 0.00 0.00 35.50 3.21
321 322 5.659440 TGACTACATACAGAGCAACATGA 57.341 39.130 0.00 0.00 0.00 3.07
322 323 5.654497 TGACTACATACAGAGCAACATGAG 58.346 41.667 0.00 0.00 0.00 2.90
323 324 5.185828 TGACTACATACAGAGCAACATGAGT 59.814 40.000 0.00 0.00 0.00 3.41
324 325 5.414360 ACTACATACAGAGCAACATGAGTG 58.586 41.667 0.00 0.00 0.00 3.51
325 326 4.541973 ACATACAGAGCAACATGAGTGA 57.458 40.909 0.00 0.00 0.00 3.41
326 327 4.898320 ACATACAGAGCAACATGAGTGAA 58.102 39.130 0.00 0.00 0.00 3.18
327 328 5.494724 ACATACAGAGCAACATGAGTGAAT 58.505 37.500 0.00 0.00 0.00 2.57
328 329 5.583854 ACATACAGAGCAACATGAGTGAATC 59.416 40.000 0.00 0.00 0.00 2.52
329 330 4.283363 ACAGAGCAACATGAGTGAATCT 57.717 40.909 0.00 2.06 0.00 2.40
330 331 5.411831 ACAGAGCAACATGAGTGAATCTA 57.588 39.130 0.00 0.00 0.00 1.98
331 332 5.174395 ACAGAGCAACATGAGTGAATCTAC 58.826 41.667 0.00 0.00 0.00 2.59
332 333 5.173664 CAGAGCAACATGAGTGAATCTACA 58.826 41.667 0.00 0.00 0.00 2.74
333 334 5.063186 CAGAGCAACATGAGTGAATCTACAC 59.937 44.000 0.00 0.00 40.60 2.90
379 380 6.726490 ACATCCGTATGTAGTAGTCCATTT 57.274 37.500 0.00 0.00 44.66 2.32
380 381 6.513180 ACATCCGTATGTAGTAGTCCATTTG 58.487 40.000 0.00 0.00 44.66 2.32
381 382 6.322969 ACATCCGTATGTAGTAGTCCATTTGA 59.677 38.462 0.00 0.00 44.66 2.69
382 383 6.778834 TCCGTATGTAGTAGTCCATTTGAA 57.221 37.500 0.00 0.00 0.00 2.69
383 384 7.172868 TCCGTATGTAGTAGTCCATTTGAAA 57.827 36.000 0.00 0.00 0.00 2.69
384 385 7.788026 TCCGTATGTAGTAGTCCATTTGAAAT 58.212 34.615 0.00 0.00 0.00 2.17
385 386 7.924412 TCCGTATGTAGTAGTCCATTTGAAATC 59.076 37.037 0.00 0.00 0.00 2.17
386 387 7.926555 CCGTATGTAGTAGTCCATTTGAAATCT 59.073 37.037 0.00 0.00 0.00 2.40
387 388 8.969267 CGTATGTAGTAGTCCATTTGAAATCTC 58.031 37.037 0.00 0.00 0.00 2.75
404 405 9.586732 TTGAAATCTCTAAAAGAAATTGAGGGA 57.413 29.630 0.00 0.00 37.61 4.20
405 406 9.236006 TGAAATCTCTAAAAGAAATTGAGGGAG 57.764 33.333 0.00 0.00 37.61 4.30
406 407 9.237187 GAAATCTCTAAAAGAAATTGAGGGAGT 57.763 33.333 0.00 0.00 37.61 3.85
408 409 9.898152 AATCTCTAAAAGAAATTGAGGGAGTAG 57.102 33.333 0.00 0.00 37.61 2.57
409 410 8.666129 TCTCTAAAAGAAATTGAGGGAGTAGA 57.334 34.615 0.00 0.00 0.00 2.59
410 411 9.101325 TCTCTAAAAGAAATTGAGGGAGTAGAA 57.899 33.333 0.00 0.00 0.00 2.10
411 412 9.726438 CTCTAAAAGAAATTGAGGGAGTAGAAA 57.274 33.333 0.00 0.00 0.00 2.52
415 416 9.987272 AAAAGAAATTGAGGGAGTAGAAAATTG 57.013 29.630 0.00 0.00 0.00 2.32
416 417 8.712228 AAGAAATTGAGGGAGTAGAAAATTGT 57.288 30.769 0.00 0.00 0.00 2.71
417 418 8.341892 AGAAATTGAGGGAGTAGAAAATTGTC 57.658 34.615 0.00 0.00 0.00 3.18
453 454 5.457686 TCCCCAATTGAATCCCTTTGATAG 58.542 41.667 7.12 0.00 31.83 2.08
461 462 6.959639 TGAATCCCTTTGATAGGCAATTAC 57.040 37.500 0.00 0.00 43.27 1.89
464 465 3.529734 TCCCTTTGATAGGCAATTACCCA 59.470 43.478 0.00 0.00 43.27 4.51
481 482 6.909550 TTACCCAAAAACATTATGCTCACT 57.090 33.333 0.00 0.00 0.00 3.41
511 512 5.163258 TGCCATAAACCATTTCCAAACAAGT 60.163 36.000 0.00 0.00 0.00 3.16
513 514 6.589907 GCCATAAACCATTTCCAAACAAGTAG 59.410 38.462 0.00 0.00 0.00 2.57
514 515 7.666623 CCATAAACCATTTCCAAACAAGTAGT 58.333 34.615 0.00 0.00 0.00 2.73
515 516 8.798402 CCATAAACCATTTCCAAACAAGTAGTA 58.202 33.333 0.00 0.00 0.00 1.82
525 526 9.796120 TTTCCAAACAAGTAGTAACTCAAATTG 57.204 29.630 0.00 0.00 33.75 2.32
538 539 5.712152 ACTCAAATTGTGTCAAATCCTCC 57.288 39.130 0.00 0.00 0.00 4.30
541 542 6.268387 ACTCAAATTGTGTCAAATCCTCCATT 59.732 34.615 0.00 0.00 0.00 3.16
545 546 7.722949 AATTGTGTCAAATCCTCCATTACAT 57.277 32.000 0.00 0.00 0.00 2.29
547 548 5.814481 TGTGTCAAATCCTCCATTACATCA 58.186 37.500 0.00 0.00 0.00 3.07
560 561 4.202080 CCATTACATCACCTTGATTGGCAG 60.202 45.833 0.00 0.00 34.28 4.85
564 565 2.037847 ACCTTGATTGGCAGGCCC 59.962 61.111 8.02 0.00 34.56 5.80
566 567 1.305549 CCTTGATTGGCAGGCCCTT 60.306 57.895 8.02 0.00 34.56 3.95
567 568 1.610554 CCTTGATTGGCAGGCCCTTG 61.611 60.000 8.02 0.00 34.56 3.61
625 626 3.456280 CAAACATTTGGGGTCAACACAG 58.544 45.455 0.00 0.00 34.59 3.66
626 627 1.703411 ACATTTGGGGTCAACACAGG 58.297 50.000 0.00 0.00 31.78 4.00
679 692 7.362315 CCATGTCATGCCCACACATATAAATAG 60.362 40.741 7.35 0.00 0.00 1.73
718 731 6.069963 ACAAACCTCTGAGCCAATAGATTAGT 60.070 38.462 0.00 0.00 0.00 2.24
719 732 7.125811 ACAAACCTCTGAGCCAATAGATTAGTA 59.874 37.037 0.00 0.00 0.00 1.82
720 733 6.909550 ACCTCTGAGCCAATAGATTAGTAG 57.090 41.667 0.00 0.00 0.00 2.57
722 735 6.492087 ACCTCTGAGCCAATAGATTAGTAGAC 59.508 42.308 0.00 0.00 0.00 2.59
816 833 1.292223 GTCGAACACCTAGCAGGCA 59.708 57.895 0.00 0.00 39.63 4.75
1406 1659 1.498576 CTCCTCCTCCTCTCATCTCCA 59.501 57.143 0.00 0.00 0.00 3.86
1421 1674 3.827817 TCTCCACCTCTCAGTTCCTTA 57.172 47.619 0.00 0.00 0.00 2.69
1429 1682 4.777896 ACCTCTCAGTTCCTTATGCTGTTA 59.222 41.667 0.00 0.00 0.00 2.41
1453 1706 1.539388 TGTGGATTACGTTACCGTCGT 59.461 47.619 0.00 0.00 46.28 4.34
1454 1707 2.030363 TGTGGATTACGTTACCGTCGTT 60.030 45.455 0.00 0.00 46.28 3.85
1474 1727 2.582052 TCATTTTTCACCCGTCTGCTT 58.418 42.857 0.00 0.00 0.00 3.91
1480 1733 0.531974 TCACCCGTCTGCTTGTTCAC 60.532 55.000 0.00 0.00 0.00 3.18
1515 1768 1.827399 ATGGTTCTTGGCTCGACCGT 61.827 55.000 0.00 0.00 43.94 4.83
1524 1777 1.801771 TGGCTCGACCGTAAACATTTG 59.198 47.619 0.00 0.00 43.94 2.32
1555 1808 6.414408 TTTCGTGCAAAAACAACATTGAAT 57.586 29.167 0.00 0.00 0.00 2.57
1559 1812 8.803201 TCGTGCAAAAACAACATTGAATAATA 57.197 26.923 0.00 0.00 0.00 0.98
1560 1813 8.695284 TCGTGCAAAAACAACATTGAATAATAC 58.305 29.630 0.00 0.00 0.00 1.89
1561 1814 8.698854 CGTGCAAAAACAACATTGAATAATACT 58.301 29.630 0.00 0.00 0.00 2.12
1564 1817 9.810231 GCAAAAACAACATTGAATAATACTTGG 57.190 29.630 0.00 0.00 0.00 3.61
1565 1818 9.810231 CAAAAACAACATTGAATAATACTTGGC 57.190 29.630 0.00 0.00 0.00 4.52
1566 1819 7.810766 AAACAACATTGAATAATACTTGGCG 57.189 32.000 0.00 0.00 0.00 5.69
1579 1832 1.539827 ACTTGGCGAAAATTCCTTCCG 59.460 47.619 0.00 0.00 0.00 4.30
1587 1840 5.263948 GCGAAAATTCCTTCCGAGTTTATC 58.736 41.667 0.00 0.00 30.76 1.75
1615 1869 6.293516 GCTTGCAAATTGACAATTGGATGAAA 60.294 34.615 17.88 10.78 0.00 2.69
1616 1870 7.574217 GCTTGCAAATTGACAATTGGATGAAAT 60.574 33.333 17.88 0.00 0.00 2.17
1634 1898 4.404073 TGAAATTGTGTACTTTTGTGGCCT 59.596 37.500 3.32 0.00 0.00 5.19
1659 1923 6.399743 TGTAGGCGTCAGTTTTGATATGTAA 58.600 36.000 0.00 0.00 35.39 2.41
1715 1979 2.648059 GTAGGATGCAATGTTGGCTCT 58.352 47.619 0.00 0.00 0.00 4.09
1720 1984 2.401583 TGCAATGTTGGCTCTACGAT 57.598 45.000 0.00 0.00 0.00 3.73
1728 1992 7.044052 GCAATGTTGGCTCTACGATTTAAATTC 60.044 37.037 1.43 0.00 0.00 2.17
1731 1995 7.526608 TGTTGGCTCTACGATTTAAATTCAAG 58.473 34.615 1.43 0.89 0.00 3.02
1733 1997 6.177610 TGGCTCTACGATTTAAATTCAAGGT 58.822 36.000 1.43 0.00 0.00 3.50
1734 1998 6.315393 TGGCTCTACGATTTAAATTCAAGGTC 59.685 38.462 1.43 0.00 0.00 3.85
1735 1999 6.315393 GGCTCTACGATTTAAATTCAAGGTCA 59.685 38.462 1.43 0.00 0.00 4.02
1778 2042 7.073265 ACAAAAACGACTTATAAACCATGACG 58.927 34.615 0.00 0.00 0.00 4.35
1784 2048 4.766375 ACTTATAAACCATGACGGAGGTG 58.234 43.478 0.00 0.00 38.37 4.00
1794 2058 3.947910 TGACGGAGGTGGTACTTAAAG 57.052 47.619 0.00 0.00 0.00 1.85
1795 2059 3.499338 TGACGGAGGTGGTACTTAAAGA 58.501 45.455 0.00 0.00 0.00 2.52
1796 2060 3.256631 TGACGGAGGTGGTACTTAAAGAC 59.743 47.826 0.00 0.00 0.00 3.01
1797 2061 3.504375 ACGGAGGTGGTACTTAAAGACT 58.496 45.455 0.00 0.00 0.00 3.24
1799 2063 4.346127 ACGGAGGTGGTACTTAAAGACTTT 59.654 41.667 5.62 5.62 0.00 2.66
1800 2064 5.539955 ACGGAGGTGGTACTTAAAGACTTTA 59.460 40.000 3.44 3.44 0.00 1.85
1801 2065 6.212187 ACGGAGGTGGTACTTAAAGACTTTAT 59.788 38.462 8.45 0.00 0.00 1.40
1802 2066 6.755607 CGGAGGTGGTACTTAAAGACTTTATC 59.244 42.308 8.45 0.64 0.00 1.75
1915 2179 8.000709 TGGGAGAATTTAGCATCTTATCATTGT 58.999 33.333 0.00 0.00 0.00 2.71
1956 2220 3.059884 TCTTAGCTTTGCTGTCTGTTCG 58.940 45.455 0.00 0.00 40.10 3.95
1969 2233 3.572682 TGTCTGTTCGTTCTAGTCCACAT 59.427 43.478 0.00 0.00 0.00 3.21
1970 2234 4.038763 TGTCTGTTCGTTCTAGTCCACATT 59.961 41.667 0.00 0.00 0.00 2.71
2065 2329 3.096489 TGAACAAAAAGATGCTGCCAC 57.904 42.857 0.00 0.00 0.00 5.01
2078 2342 2.985847 GCCACCCTTGACAGTGCC 60.986 66.667 0.00 0.00 32.48 5.01
2131 2395 3.675995 AGGATTGCCTTGTGATGCA 57.324 47.368 0.00 0.00 43.90 3.96
2207 2472 4.450976 TGCGACCAGTCATTAATTGCTAT 58.549 39.130 0.00 0.00 0.00 2.97
2243 2532 4.534500 TCCACTGTAGGCCAATTCTTCTTA 59.466 41.667 5.01 0.00 0.00 2.10
2309 2598 7.281774 AGTTGAAGGTATCTGTGCTTATTCATG 59.718 37.037 0.00 0.00 0.00 3.07
2333 2623 2.102578 AGGTGGTTATTGGAGCAATGC 58.897 47.619 0.00 0.00 35.54 3.56
2334 2624 1.136891 GGTGGTTATTGGAGCAATGCC 59.863 52.381 0.00 0.00 35.54 4.40
2398 2688 4.067192 CACATGTGATGTTCTCCTTGTGA 58.933 43.478 21.64 0.00 42.70 3.58
2445 2735 5.365021 ACTAAAGCATCCTATCAGCACTT 57.635 39.130 0.00 0.00 0.00 3.16
2453 2743 5.277058 GCATCCTATCAGCACTTTTAAGTCG 60.277 44.000 0.00 0.00 37.08 4.18
2480 2770 6.974622 CCCATTGAACTGTATTTGAACTATGC 59.025 38.462 0.00 0.00 0.00 3.14
2491 2781 3.616956 TGAACTATGCCTGTTCCAGAG 57.383 47.619 9.87 0.00 42.04 3.35
2637 2927 2.679837 CTCACCGGTTTCTGATGATTGG 59.320 50.000 2.97 0.00 0.00 3.16
2645 2935 4.462483 GGTTTCTGATGATTGGCCAGTTAA 59.538 41.667 5.11 0.00 0.00 2.01
2671 2961 7.056800 CGGTCGTTTTTCTTGAATTCAAATTG 58.943 34.615 20.82 10.43 35.15 2.32
2792 3083 5.350504 TCTCAATTTTGGGCAAAAACAGA 57.649 34.783 0.99 2.84 42.71 3.41
2949 3328 8.617809 GGTTAACTTCAAGTCTTCAACACATAA 58.382 33.333 5.42 0.00 0.00 1.90
3015 3394 8.388319 TGATTGTACAAAAAGTCAAAAACTCG 57.612 30.769 13.23 0.00 37.17 4.18
3209 3588 4.349930 ACAGTTCCCTTCTTAAGTGGCTTA 59.650 41.667 1.63 0.00 31.60 3.09
3211 3590 5.181433 CAGTTCCCTTCTTAAGTGGCTTAAC 59.819 44.000 1.63 9.93 33.19 2.01
3212 3591 5.073280 AGTTCCCTTCTTAAGTGGCTTAACT 59.927 40.000 1.63 11.56 33.19 2.24
3213 3592 4.906618 TCCCTTCTTAAGTGGCTTAACTG 58.093 43.478 1.63 0.00 33.19 3.16
3214 3593 3.440522 CCCTTCTTAAGTGGCTTAACTGC 59.559 47.826 1.63 0.00 33.19 4.40
3215 3594 4.327680 CCTTCTTAAGTGGCTTAACTGCT 58.672 43.478 1.63 0.00 33.19 4.24
3216 3595 5.488341 CCTTCTTAAGTGGCTTAACTGCTA 58.512 41.667 1.63 0.00 33.19 3.49
3320 3701 7.033185 GCGAAATTTGTCCTTTGTGGTATTAT 58.967 34.615 0.00 0.00 37.07 1.28
3348 3729 5.591067 TGTGTCCAATTCTAACGAGGTTTTT 59.409 36.000 0.00 0.00 0.00 1.94
3581 3962 3.081804 CCAGCAACTTAGGGACGAATTT 58.918 45.455 0.00 0.00 0.00 1.82
3611 3992 0.029834 GGGCTGATGCTGTATTTGCG 59.970 55.000 0.00 0.00 39.59 4.85
3698 4079 5.301805 TCTCTTGGAAATGGGTTTCAAGAAC 59.698 40.000 10.27 0.00 44.42 3.01
3743 4124 3.131400 TGGGTGGTTTTACAAAAGCTGAC 59.869 43.478 15.35 7.90 44.37 3.51
3762 4143 1.021390 CGATGTCCCACTGCCTGTTC 61.021 60.000 0.00 0.00 0.00 3.18
3788 4169 4.720046 TGGAACAACACAGCAAGGTAATA 58.280 39.130 0.00 0.00 31.92 0.98
3857 4239 3.268023 ACCTTAAGTCCTACTGCATGC 57.732 47.619 11.82 11.82 0.00 4.06
3944 4326 2.357009 GCATTATGCTGGTCCAACAGAG 59.643 50.000 10.27 0.00 40.96 3.35
4016 4398 2.512515 GGTCGTGATCCAGCTGGC 60.513 66.667 28.91 15.67 34.44 4.85
4140 4522 8.915057 CTTCAAGGTATTTGATGGATAGATGT 57.085 34.615 0.00 0.00 44.90 3.06
4141 4523 8.681486 TTCAAGGTATTTGATGGATAGATGTG 57.319 34.615 0.00 0.00 44.90 3.21
4147 4529 7.721399 GGTATTTGATGGATAGATGTGTCCTTT 59.279 37.037 7.19 0.00 34.99 3.11
4198 4580 7.013274 TGTCCTGTTTTTCTTTAGTTGGATCAG 59.987 37.037 0.00 0.00 0.00 2.90
4202 4584 7.781056 TGTTTTTCTTTAGTTGGATCAGCTTT 58.219 30.769 0.00 0.00 0.00 3.51
4211 4593 4.768968 AGTTGGATCAGCTTTAATGCTTGT 59.231 37.500 12.85 5.23 41.98 3.16
4311 4776 2.311463 TCTCTCCAGGTAGCAGCATAC 58.689 52.381 0.00 0.00 0.00 2.39
4320 4785 2.485426 GGTAGCAGCATACGATACGGTA 59.515 50.000 0.00 0.00 0.00 4.02
4403 4868 5.622770 ACCAAGGTAAGCGTTTCATTTAG 57.377 39.130 0.00 0.00 0.00 1.85
4405 4870 5.180680 ACCAAGGTAAGCGTTTCATTTAGTC 59.819 40.000 0.00 0.00 0.00 2.59
4410 4875 5.063564 GGTAAGCGTTTCATTTAGTCTCAGG 59.936 44.000 0.00 0.00 0.00 3.86
4414 4879 4.184629 CGTTTCATTTAGTCTCAGGGGAG 58.815 47.826 0.00 0.00 42.80 4.30
4434 4902 3.983741 AGAAATGCTCGCTCTATGGTAC 58.016 45.455 0.00 0.00 0.00 3.34
4469 4937 5.223449 ACTTTACCTGCTGCTAACAACTA 57.777 39.130 0.00 0.00 0.00 2.24
4507 4976 3.916439 CGCACTTTCGCCAAAACC 58.084 55.556 0.00 0.00 0.00 3.27
4585 5054 5.347635 TGACTACTACAATAGCTTGCAAACG 59.652 40.000 0.00 0.00 35.69 3.60
4598 5067 0.321298 GCAAACGGAAGGAGCTACCA 60.321 55.000 0.00 0.00 42.04 3.25
4676 5145 1.883021 CCGGCCAGAAATGGTGAAC 59.117 57.895 2.24 0.00 0.00 3.18
4688 5157 0.608035 TGGTGAACGCAGGGGATTTC 60.608 55.000 0.00 0.00 0.00 2.17
4696 5171 1.828979 GCAGGGGATTTCAAACCGTA 58.171 50.000 0.00 0.00 0.00 4.02
4697 5172 1.471287 GCAGGGGATTTCAAACCGTAC 59.529 52.381 0.00 0.00 0.00 3.67
4698 5173 2.089201 CAGGGGATTTCAAACCGTACC 58.911 52.381 0.00 0.00 0.00 3.34
4699 5174 1.990327 AGGGGATTTCAAACCGTACCT 59.010 47.619 0.00 0.00 0.00 3.08
4701 5176 2.751259 GGGGATTTCAAACCGTACCTTC 59.249 50.000 0.00 0.00 0.00 3.46
4846 5321 6.785191 TGAAACTCAAAACTGTTGACAGATC 58.215 36.000 17.42 0.00 46.59 2.75
4860 5335 0.179137 CAGATCGAGCTGTAACCGCA 60.179 55.000 22.28 0.00 0.00 5.69
4866 5341 3.788766 GCTGTAACCGCACCGCAG 61.789 66.667 0.00 0.00 0.00 5.18
4930 5405 6.704310 AGCCAATAAAGAAGTTCATTGCAAT 58.296 32.000 5.99 5.99 0.00 3.56
4955 5430 1.500108 GAGCTCATCCAAGATCTGCG 58.500 55.000 9.40 0.00 0.00 5.18
4956 5431 1.068281 GAGCTCATCCAAGATCTGCGA 59.932 52.381 9.40 0.00 0.00 5.10
4957 5432 1.483827 AGCTCATCCAAGATCTGCGAA 59.516 47.619 0.00 0.00 0.00 4.70
4971 5617 3.123804 TCTGCGAACAAGTTGAGTCTTC 58.876 45.455 10.54 1.88 0.00 2.87
4972 5618 1.858458 TGCGAACAAGTTGAGTCTTCG 59.142 47.619 17.36 17.36 0.00 3.79
5063 5710 1.134175 CCACGCCTTGTCACACTTTTT 59.866 47.619 0.00 0.00 0.00 1.94
5127 5775 1.815003 AGCATGCCACACTTTCTTAGC 59.185 47.619 15.66 0.00 0.00 3.09
5176 5824 1.422024 TGCTAACCAACTTAGGCCACA 59.578 47.619 5.01 0.00 33.49 4.17
5178 5826 2.488153 GCTAACCAACTTAGGCCACAAG 59.512 50.000 5.01 10.74 33.49 3.16
5184 5832 3.578688 CAACTTAGGCCACAAGCAATTC 58.421 45.455 15.13 0.00 46.50 2.17
5193 5841 1.112315 ACAAGCAATTCGGCCACCAA 61.112 50.000 2.24 0.00 0.00 3.67
5194 5842 0.388907 CAAGCAATTCGGCCACCAAG 60.389 55.000 2.24 0.00 0.00 3.61
5198 5846 1.066929 GCAATTCGGCCACCAAGAAAT 60.067 47.619 2.24 0.00 0.00 2.17
5233 5881 1.247419 TGTGGCAAAATGCGTAGGGG 61.247 55.000 0.00 0.00 46.21 4.79
5252 5900 0.664166 GCAACCAAACATGCCTGACG 60.664 55.000 0.00 0.00 36.56 4.35
5253 5901 0.039256 CAACCAAACATGCCTGACGG 60.039 55.000 0.00 0.00 0.00 4.79
5256 5904 0.888736 CCAAACATGCCTGACGGTGA 60.889 55.000 0.00 0.00 0.00 4.02
5335 5983 8.627428 GCGAAAAATATTATCTTGCGATTTACC 58.373 33.333 3.40 0.00 0.00 2.85
5341 5989 1.281419 TCTTGCGATTTACCCCCTCA 58.719 50.000 0.00 0.00 0.00 3.86
5350 5998 5.469084 GCGATTTACCCCCTCAGTAAATTAG 59.531 44.000 9.54 8.49 45.72 1.73
5362 6010 7.589221 CCCTCAGTAAATTAGTATACGACGTTC 59.411 40.741 5.50 0.00 0.00 3.95
5377 6025 4.275443 ACGACGTTCTAGAGACTTGAAGTT 59.725 41.667 0.00 0.00 0.00 2.66
5382 6030 7.486647 ACGTTCTAGAGACTTGAAGTTTACAA 58.513 34.615 0.00 0.00 0.00 2.41
5389 6037 4.822350 AGACTTGAAGTTTACAAAGGGAGC 59.178 41.667 0.00 0.00 0.00 4.70
5390 6038 4.532834 ACTTGAAGTTTACAAAGGGAGCA 58.467 39.130 0.00 0.00 0.00 4.26
5401 6049 2.363359 CAAAGGGAGCACTTTTGAAGCT 59.637 45.455 9.44 0.00 38.56 3.74
5416 6064 7.970614 ACTTTTGAAGCTTCTACACAAGAAAAG 59.029 33.333 26.53 26.53 43.66 2.27
5419 6067 4.706842 AGCTTCTACACAAGAAAAGGGA 57.293 40.909 0.00 0.00 43.66 4.20
5420 6068 4.646572 AGCTTCTACACAAGAAAAGGGAG 58.353 43.478 0.00 0.00 43.66 4.30
5422 6070 4.327680 CTTCTACACAAGAAAAGGGAGGG 58.672 47.826 0.00 0.00 43.66 4.30
5432 6081 2.165357 AAAGGGAGGGAATGGATTGC 57.835 50.000 0.00 0.00 0.00 3.56
5476 6133 6.470877 CGGGGACAAAATAATGTGAAATTACG 59.529 38.462 0.00 0.00 32.57 3.18
5519 6176 1.342076 TGAGACCTAGACCCGAGCAAT 60.342 52.381 0.00 0.00 0.00 3.56
5523 6180 0.249657 CCTAGACCCGAGCAATCTGC 60.250 60.000 0.00 0.00 45.46 4.26
5533 6190 3.422122 GCAATCTGCGCAAAATCCA 57.578 47.368 13.05 0.00 31.71 3.41
5546 6203 4.870426 CGCAAAATCCAGCTCTCTAAACTA 59.130 41.667 0.00 0.00 0.00 2.24
5550 6207 8.246871 GCAAAATCCAGCTCTCTAAACTAAAAT 58.753 33.333 0.00 0.00 0.00 1.82
5553 6210 8.669946 AATCCAGCTCTCTAAACTAAAATAGC 57.330 34.615 0.00 0.00 0.00 2.97
5554 6211 6.273825 TCCAGCTCTCTAAACTAAAATAGCG 58.726 40.000 0.00 0.00 34.01 4.26
5555 6212 6.096423 TCCAGCTCTCTAAACTAAAATAGCGA 59.904 38.462 0.00 0.00 34.01 4.93
5556 6213 6.926272 CCAGCTCTCTAAACTAAAATAGCGAT 59.074 38.462 0.00 0.00 34.01 4.58
5557 6214 7.115663 CCAGCTCTCTAAACTAAAATAGCGATC 59.884 40.741 0.00 0.00 34.01 3.69
5558 6215 7.865385 CAGCTCTCTAAACTAAAATAGCGATCT 59.135 37.037 0.00 0.00 34.01 2.75
5559 6216 9.069082 AGCTCTCTAAACTAAAATAGCGATCTA 57.931 33.333 0.00 0.00 34.01 1.98
5560 6217 9.680315 GCTCTCTAAACTAAAATAGCGATCTAA 57.320 33.333 0.00 0.00 0.00 2.10
5585 6242 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
5586 6243 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
5587 6244 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
5588 6245 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
5589 6246 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
5596 6253 7.693969 TTAGTTTACAGAGGGAGTAGTACAC 57.306 40.000 2.52 0.00 0.00 2.90
5597 6254 5.638133 AGTTTACAGAGGGAGTAGTACACA 58.362 41.667 2.52 0.00 0.00 3.72
5598 6255 6.073314 AGTTTACAGAGGGAGTAGTACACAA 58.927 40.000 2.52 0.00 0.00 3.33
5599 6256 6.208994 AGTTTACAGAGGGAGTAGTACACAAG 59.791 42.308 2.52 0.00 0.00 3.16
5600 6257 4.383931 ACAGAGGGAGTAGTACACAAGA 57.616 45.455 2.52 0.00 0.00 3.02
5601 6258 4.936802 ACAGAGGGAGTAGTACACAAGAT 58.063 43.478 2.52 0.00 0.00 2.40
5602 6259 5.334421 ACAGAGGGAGTAGTACACAAGATT 58.666 41.667 2.52 0.00 0.00 2.40
5603 6260 5.780793 ACAGAGGGAGTAGTACACAAGATTT 59.219 40.000 2.52 0.00 0.00 2.17
5604 6261 6.270231 ACAGAGGGAGTAGTACACAAGATTTT 59.730 38.462 2.52 0.00 0.00 1.82
5605 6262 7.453752 ACAGAGGGAGTAGTACACAAGATTTTA 59.546 37.037 2.52 0.00 0.00 1.52
5606 6263 7.976734 CAGAGGGAGTAGTACACAAGATTTTAG 59.023 40.741 2.52 0.00 0.00 1.85
5607 6264 7.124448 AGAGGGAGTAGTACACAAGATTTTAGG 59.876 40.741 2.52 0.00 0.00 2.69
5608 6265 6.156429 AGGGAGTAGTACACAAGATTTTAGGG 59.844 42.308 2.52 0.00 0.00 3.53
5609 6266 6.070366 GGGAGTAGTACACAAGATTTTAGGGT 60.070 42.308 2.52 0.00 0.00 4.34
5610 6267 7.124750 GGGAGTAGTACACAAGATTTTAGGGTA 59.875 40.741 2.52 0.00 0.00 3.69
5611 6268 8.534496 GGAGTAGTACACAAGATTTTAGGGTAA 58.466 37.037 2.52 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.545105 AGAGCAAAACATGAAATCAAAATACAA 57.455 25.926 0.00 0.00 0.00 2.41
2 3 9.195411 GAGAGCAAAACATGAAATCAAAATACA 57.805 29.630 0.00 0.00 0.00 2.29
3 4 9.415544 AGAGAGCAAAACATGAAATCAAAATAC 57.584 29.630 0.00 0.00 0.00 1.89
4 5 9.414295 CAGAGAGCAAAACATGAAATCAAAATA 57.586 29.630 0.00 0.00 0.00 1.40
5 6 7.386848 CCAGAGAGCAAAACATGAAATCAAAAT 59.613 33.333 0.00 0.00 0.00 1.82
6 7 6.702723 CCAGAGAGCAAAACATGAAATCAAAA 59.297 34.615 0.00 0.00 0.00 2.44
7 8 6.183360 ACCAGAGAGCAAAACATGAAATCAAA 60.183 34.615 0.00 0.00 0.00 2.69
8 9 5.302568 ACCAGAGAGCAAAACATGAAATCAA 59.697 36.000 0.00 0.00 0.00 2.57
9 10 4.828939 ACCAGAGAGCAAAACATGAAATCA 59.171 37.500 0.00 0.00 0.00 2.57
10 11 5.159209 CACCAGAGAGCAAAACATGAAATC 58.841 41.667 0.00 0.00 0.00 2.17
11 12 4.586001 ACACCAGAGAGCAAAACATGAAAT 59.414 37.500 0.00 0.00 0.00 2.17
13 14 3.316029 CACACCAGAGAGCAAAACATGAA 59.684 43.478 0.00 0.00 0.00 2.57
14 15 2.880268 CACACCAGAGAGCAAAACATGA 59.120 45.455 0.00 0.00 0.00 3.07
15 16 2.030540 CCACACCAGAGAGCAAAACATG 60.031 50.000 0.00 0.00 0.00 3.21
16 17 2.233271 CCACACCAGAGAGCAAAACAT 58.767 47.619 0.00 0.00 0.00 2.71
17 18 1.064758 ACCACACCAGAGAGCAAAACA 60.065 47.619 0.00 0.00 0.00 2.83
18 19 1.334869 CACCACACCAGAGAGCAAAAC 59.665 52.381 0.00 0.00 0.00 2.43
19 20 1.064758 ACACCACACCAGAGAGCAAAA 60.065 47.619 0.00 0.00 0.00 2.44
20 21 0.546122 ACACCACACCAGAGAGCAAA 59.454 50.000 0.00 0.00 0.00 3.68
21 22 0.106708 GACACCACACCAGAGAGCAA 59.893 55.000 0.00 0.00 0.00 3.91
22 23 1.048160 TGACACCACACCAGAGAGCA 61.048 55.000 0.00 0.00 0.00 4.26
23 24 0.601311 GTGACACCACACCAGAGAGC 60.601 60.000 0.00 0.00 42.72 4.09
24 25 1.043816 AGTGACACCACACCAGAGAG 58.956 55.000 0.84 0.00 45.54 3.20
25 26 0.752658 CAGTGACACCACACCAGAGA 59.247 55.000 0.84 0.00 45.54 3.10
26 27 0.465705 ACAGTGACACCACACCAGAG 59.534 55.000 0.84 0.00 45.54 3.35
27 28 0.177836 CACAGTGACACCACACCAGA 59.822 55.000 0.84 0.00 45.54 3.86
28 29 0.107703 ACACAGTGACACCACACCAG 60.108 55.000 7.81 0.00 45.54 4.00
29 30 0.107897 GACACAGTGACACCACACCA 60.108 55.000 7.81 0.00 45.54 4.17
30 31 0.107897 TGACACAGTGACACCACACC 60.108 55.000 7.81 0.00 45.54 4.16
31 32 1.006832 GTGACACAGTGACACCACAC 58.993 55.000 21.39 10.79 45.54 3.82
32 33 0.610687 TGTGACACAGTGACACCACA 59.389 50.000 26.61 19.93 45.54 4.17
33 34 1.006832 GTGTGACACAGTGACACCAC 58.993 55.000 26.61 20.95 42.97 4.16
34 35 0.610687 TGTGTGACACAGTGACACCA 59.389 50.000 26.61 21.42 46.86 4.17
35 36 3.451793 TGTGTGACACAGTGACACC 57.548 52.632 26.61 19.64 46.86 4.16
43 44 1.451207 GGTGTGCCTGTGTGACACA 60.451 57.895 18.38 18.38 42.45 3.72
44 45 2.534019 CGGTGTGCCTGTGTGACAC 61.534 63.158 9.14 9.14 39.44 3.67
45 46 2.203001 CGGTGTGCCTGTGTGACA 60.203 61.111 0.00 0.00 0.00 3.58
46 47 2.972505 CCGGTGTGCCTGTGTGAC 60.973 66.667 0.00 0.00 0.00 3.67
47 48 2.933878 GAACCGGTGTGCCTGTGTGA 62.934 60.000 8.52 0.00 32.36 3.58
48 49 2.515991 AACCGGTGTGCCTGTGTG 60.516 61.111 8.52 0.00 32.36 3.82
49 50 1.404479 TAGAACCGGTGTGCCTGTGT 61.404 55.000 8.52 0.00 32.36 3.72
50 51 0.250124 TTAGAACCGGTGTGCCTGTG 60.250 55.000 8.52 0.00 32.36 3.66
51 52 0.690762 ATTAGAACCGGTGTGCCTGT 59.309 50.000 8.52 0.00 33.43 4.00
52 53 1.821216 AATTAGAACCGGTGTGCCTG 58.179 50.000 8.52 0.00 0.00 4.85
53 54 3.926058 ATAATTAGAACCGGTGTGCCT 57.074 42.857 8.52 6.06 0.00 4.75
54 55 4.444536 TGTATAATTAGAACCGGTGTGCC 58.555 43.478 8.52 0.00 0.00 5.01
55 56 5.233689 GTCTGTATAATTAGAACCGGTGTGC 59.766 44.000 8.52 0.00 0.00 4.57
56 57 5.457799 CGTCTGTATAATTAGAACCGGTGTG 59.542 44.000 8.52 0.00 0.00 3.82
57 58 5.585390 CGTCTGTATAATTAGAACCGGTGT 58.415 41.667 8.52 0.11 0.00 4.16
58 59 4.443394 GCGTCTGTATAATTAGAACCGGTG 59.557 45.833 8.52 0.00 0.00 4.94
59 60 4.614946 GCGTCTGTATAATTAGAACCGGT 58.385 43.478 0.00 0.00 0.00 5.28
60 61 3.667261 CGCGTCTGTATAATTAGAACCGG 59.333 47.826 0.00 0.00 0.00 5.28
61 62 4.145928 CACGCGTCTGTATAATTAGAACCG 59.854 45.833 9.86 0.00 0.00 4.44
62 63 4.085210 GCACGCGTCTGTATAATTAGAACC 60.085 45.833 9.86 0.00 0.00 3.62
63 64 4.738740 AGCACGCGTCTGTATAATTAGAAC 59.261 41.667 9.86 0.00 0.00 3.01
64 65 4.928601 AGCACGCGTCTGTATAATTAGAA 58.071 39.130 9.86 0.00 0.00 2.10
65 66 4.534168 GAGCACGCGTCTGTATAATTAGA 58.466 43.478 9.86 0.00 0.00 2.10
66 67 3.669122 GGAGCACGCGTCTGTATAATTAG 59.331 47.826 9.86 0.00 0.00 1.73
67 68 3.551454 GGGAGCACGCGTCTGTATAATTA 60.551 47.826 9.86 0.00 0.00 1.40
68 69 2.470821 GGAGCACGCGTCTGTATAATT 58.529 47.619 9.86 0.00 0.00 1.40
69 70 1.269621 GGGAGCACGCGTCTGTATAAT 60.270 52.381 9.86 0.00 0.00 1.28
70 71 0.101759 GGGAGCACGCGTCTGTATAA 59.898 55.000 9.86 0.00 0.00 0.98
71 72 1.731700 GGGAGCACGCGTCTGTATA 59.268 57.895 9.86 0.00 0.00 1.47
72 73 2.494918 GGGAGCACGCGTCTGTAT 59.505 61.111 9.86 0.00 0.00 2.29
73 74 4.111016 CGGGAGCACGCGTCTGTA 62.111 66.667 9.86 0.00 45.13 2.74
80 81 0.110373 CACTTTAAACGGGAGCACGC 60.110 55.000 0.00 0.00 37.37 5.34
81 82 1.070175 CACACTTTAAACGGGAGCACG 60.070 52.381 0.00 0.00 40.31 5.34
82 83 2.032290 GTCACACTTTAAACGGGAGCAC 60.032 50.000 0.00 0.00 0.00 4.40
83 84 2.215196 GTCACACTTTAAACGGGAGCA 58.785 47.619 0.00 0.00 0.00 4.26
84 85 1.534163 GGTCACACTTTAAACGGGAGC 59.466 52.381 0.05 0.05 0.00 4.70
85 86 2.148768 GGGTCACACTTTAAACGGGAG 58.851 52.381 0.00 0.00 0.00 4.30
86 87 1.540797 CGGGTCACACTTTAAACGGGA 60.541 52.381 0.00 0.00 0.00 5.14
87 88 0.869730 CGGGTCACACTTTAAACGGG 59.130 55.000 0.00 0.00 0.00 5.28
88 89 1.528161 GTCGGGTCACACTTTAAACGG 59.472 52.381 0.00 0.00 0.00 4.44
89 90 1.528161 GGTCGGGTCACACTTTAAACG 59.472 52.381 0.00 0.00 0.00 3.60
90 91 1.875514 GGGTCGGGTCACACTTTAAAC 59.124 52.381 0.00 0.00 0.00 2.01
91 92 1.489649 TGGGTCGGGTCACACTTTAAA 59.510 47.619 0.00 0.00 0.00 1.52
92 93 1.129917 TGGGTCGGGTCACACTTTAA 58.870 50.000 0.00 0.00 0.00 1.52
93 94 1.276989 GATGGGTCGGGTCACACTTTA 59.723 52.381 0.00 0.00 0.00 1.85
94 95 0.036306 GATGGGTCGGGTCACACTTT 59.964 55.000 0.00 0.00 0.00 2.66
95 96 1.125093 TGATGGGTCGGGTCACACTT 61.125 55.000 0.00 0.00 0.00 3.16
96 97 0.909610 ATGATGGGTCGGGTCACACT 60.910 55.000 0.00 0.00 0.00 3.55
97 98 0.828022 TATGATGGGTCGGGTCACAC 59.172 55.000 0.00 0.00 0.00 3.82
98 99 1.574263 TTATGATGGGTCGGGTCACA 58.426 50.000 0.00 0.00 0.00 3.58
99 100 2.702592 TTTATGATGGGTCGGGTCAC 57.297 50.000 0.00 0.00 0.00 3.67
100 101 3.943671 AATTTATGATGGGTCGGGTCA 57.056 42.857 0.00 0.00 0.00 4.02
101 102 5.374071 ACTAAATTTATGATGGGTCGGGTC 58.626 41.667 0.00 0.00 0.00 4.46
102 103 5.382664 ACTAAATTTATGATGGGTCGGGT 57.617 39.130 0.00 0.00 0.00 5.28
103 104 7.811117 TTTACTAAATTTATGATGGGTCGGG 57.189 36.000 0.00 0.00 0.00 5.14
116 117 9.498176 AGAGTGTTGGTCGTATTTACTAAATTT 57.502 29.630 0.00 0.00 32.38 1.82
117 118 8.932791 CAGAGTGTTGGTCGTATTTACTAAATT 58.067 33.333 0.00 0.00 32.38 1.82
118 119 7.064253 GCAGAGTGTTGGTCGTATTTACTAAAT 59.936 37.037 0.00 0.00 34.90 1.40
119 120 6.366877 GCAGAGTGTTGGTCGTATTTACTAAA 59.633 38.462 0.00 0.00 0.00 1.85
120 121 5.865552 GCAGAGTGTTGGTCGTATTTACTAA 59.134 40.000 0.00 0.00 0.00 2.24
121 122 5.404946 GCAGAGTGTTGGTCGTATTTACTA 58.595 41.667 0.00 0.00 0.00 1.82
122 123 4.243270 GCAGAGTGTTGGTCGTATTTACT 58.757 43.478 0.00 0.00 0.00 2.24
123 124 3.060363 CGCAGAGTGTTGGTCGTATTTAC 59.940 47.826 0.00 0.00 0.00 2.01
124 125 3.247442 CGCAGAGTGTTGGTCGTATTTA 58.753 45.455 0.00 0.00 0.00 1.40
125 126 2.066262 CGCAGAGTGTTGGTCGTATTT 58.934 47.619 0.00 0.00 0.00 1.40
126 127 1.710013 CGCAGAGTGTTGGTCGTATT 58.290 50.000 0.00 0.00 0.00 1.89
127 128 0.736325 GCGCAGAGTGTTGGTCGTAT 60.736 55.000 0.30 0.00 0.00 3.06
128 129 1.372499 GCGCAGAGTGTTGGTCGTA 60.372 57.895 0.30 0.00 0.00 3.43
129 130 2.661866 GCGCAGAGTGTTGGTCGT 60.662 61.111 0.30 0.00 0.00 4.34
130 131 3.767230 CGCGCAGAGTGTTGGTCG 61.767 66.667 8.75 0.00 0.00 4.79
131 132 4.077188 GCGCGCAGAGTGTTGGTC 62.077 66.667 29.10 0.00 0.00 4.02
134 135 3.782244 GAGGCGCGCAGAGTGTTG 61.782 66.667 34.42 0.00 0.00 3.33
148 149 3.068691 TCGTCTGAAGGGCGGAGG 61.069 66.667 0.00 0.00 38.76 4.30
149 150 1.949847 ATGTCGTCTGAAGGGCGGAG 61.950 60.000 0.00 0.00 30.98 4.63
150 151 1.541310 AATGTCGTCTGAAGGGCGGA 61.541 55.000 0.00 0.00 0.00 5.54
151 152 0.673644 AAATGTCGTCTGAAGGGCGG 60.674 55.000 0.00 0.00 0.00 6.13
152 153 2.004583 TAAATGTCGTCTGAAGGGCG 57.995 50.000 0.00 0.00 0.00 6.13
153 154 4.759516 TTTTAAATGTCGTCTGAAGGGC 57.240 40.909 0.00 0.00 0.00 5.19
154 155 6.554334 TCTTTTTAAATGTCGTCTGAAGGG 57.446 37.500 0.00 0.00 0.00 3.95
155 156 8.850454 TTTTCTTTTTAAATGTCGTCTGAAGG 57.150 30.769 0.00 0.00 0.00 3.46
162 163 9.191995 GGTCATGATTTTCTTTTTAAATGTCGT 57.808 29.630 0.00 0.00 0.00 4.34
163 164 9.190858 TGGTCATGATTTTCTTTTTAAATGTCG 57.809 29.630 0.00 0.00 0.00 4.35
168 169 9.587772 TCGTTTGGTCATGATTTTCTTTTTAAA 57.412 25.926 0.00 0.00 0.00 1.52
169 170 9.026074 GTCGTTTGGTCATGATTTTCTTTTTAA 57.974 29.630 0.00 0.00 0.00 1.52
170 171 8.191446 TGTCGTTTGGTCATGATTTTCTTTTTA 58.809 29.630 0.00 0.00 0.00 1.52
171 172 7.038659 TGTCGTTTGGTCATGATTTTCTTTTT 58.961 30.769 0.00 0.00 0.00 1.94
172 173 6.568869 TGTCGTTTGGTCATGATTTTCTTTT 58.431 32.000 0.00 0.00 0.00 2.27
176 177 5.746245 TGTTTGTCGTTTGGTCATGATTTTC 59.254 36.000 0.00 0.00 0.00 2.29
184 185 4.876679 TCAATAGTGTTTGTCGTTTGGTCA 59.123 37.500 0.00 0.00 0.00 4.02
192 193 8.900511 ATGATCAAAATCAATAGTGTTTGTCG 57.099 30.769 0.00 0.00 44.85 4.35
199 200 9.079833 GGTTTGTGATGATCAAAATCAATAGTG 57.920 33.333 0.00 0.00 44.85 2.74
201 202 9.642327 TTGGTTTGTGATGATCAAAATCAATAG 57.358 29.630 17.05 0.00 44.85 1.73
205 206 7.224362 GTGTTTGGTTTGTGATGATCAAAATCA 59.776 33.333 0.00 5.61 45.73 2.57
238 239 4.499526 GGAGAGAGTAGCTGACATGTCATG 60.500 50.000 28.00 21.24 39.13 3.07
254 255 7.493367 AGACAAATATTTAGGAACGGAGAGAG 58.507 38.462 0.00 0.00 0.00 3.20
255 256 7.419711 AGACAAATATTTAGGAACGGAGAGA 57.580 36.000 0.00 0.00 0.00 3.10
256 257 8.494016 AAAGACAAATATTTAGGAACGGAGAG 57.506 34.615 0.00 0.00 0.00 3.20
257 258 8.857694 AAAAGACAAATATTTAGGAACGGAGA 57.142 30.769 0.00 0.00 0.00 3.71
284 285 9.725019 TGTATGTAGTCATTTGTTGAAATCTCT 57.275 29.630 0.00 0.00 35.70 3.10
285 286 9.979270 CTGTATGTAGTCATTTGTTGAAATCTC 57.021 33.333 0.00 0.00 35.70 2.75
286 287 9.725019 TCTGTATGTAGTCATTTGTTGAAATCT 57.275 29.630 0.00 0.00 35.70 2.40
287 288 9.979270 CTCTGTATGTAGTCATTTGTTGAAATC 57.021 33.333 0.00 0.00 35.70 2.17
288 289 8.454106 GCTCTGTATGTAGTCATTTGTTGAAAT 58.546 33.333 0.00 0.00 35.70 2.17
289 290 7.443879 TGCTCTGTATGTAGTCATTTGTTGAAA 59.556 33.333 0.00 0.00 35.70 2.69
290 291 6.934083 TGCTCTGTATGTAGTCATTTGTTGAA 59.066 34.615 0.00 0.00 35.70 2.69
291 292 6.463360 TGCTCTGTATGTAGTCATTTGTTGA 58.537 36.000 0.00 0.00 35.70 3.18
292 293 6.726258 TGCTCTGTATGTAGTCATTTGTTG 57.274 37.500 0.00 0.00 35.70 3.33
293 294 6.710295 TGTTGCTCTGTATGTAGTCATTTGTT 59.290 34.615 0.00 0.00 35.70 2.83
294 295 6.230472 TGTTGCTCTGTATGTAGTCATTTGT 58.770 36.000 0.00 0.00 35.70 2.83
295 296 6.726258 TGTTGCTCTGTATGTAGTCATTTG 57.274 37.500 0.00 0.00 35.70 2.32
296 297 7.105588 TCATGTTGCTCTGTATGTAGTCATTT 58.894 34.615 0.00 0.00 35.70 2.32
297 298 6.643388 TCATGTTGCTCTGTATGTAGTCATT 58.357 36.000 0.00 0.00 35.70 2.57
298 299 6.127225 ACTCATGTTGCTCTGTATGTAGTCAT 60.127 38.462 0.00 0.00 38.00 3.06
299 300 5.185828 ACTCATGTTGCTCTGTATGTAGTCA 59.814 40.000 0.00 0.00 0.00 3.41
300 301 5.518128 CACTCATGTTGCTCTGTATGTAGTC 59.482 44.000 0.00 0.00 0.00 2.59
301 302 5.185828 TCACTCATGTTGCTCTGTATGTAGT 59.814 40.000 0.00 0.00 0.00 2.73
302 303 5.654497 TCACTCATGTTGCTCTGTATGTAG 58.346 41.667 0.00 0.00 0.00 2.74
303 304 5.659440 TCACTCATGTTGCTCTGTATGTA 57.341 39.130 0.00 0.00 0.00 2.29
304 305 4.541973 TCACTCATGTTGCTCTGTATGT 57.458 40.909 0.00 0.00 0.00 2.29
305 306 5.816258 AGATTCACTCATGTTGCTCTGTATG 59.184 40.000 0.00 0.00 0.00 2.39
306 307 5.987098 AGATTCACTCATGTTGCTCTGTAT 58.013 37.500 0.00 0.00 0.00 2.29
307 308 5.411831 AGATTCACTCATGTTGCTCTGTA 57.588 39.130 0.00 0.00 0.00 2.74
308 309 4.283363 AGATTCACTCATGTTGCTCTGT 57.717 40.909 0.00 0.00 0.00 3.41
309 310 5.063186 GTGTAGATTCACTCATGTTGCTCTG 59.937 44.000 0.00 0.00 35.68 3.35
310 311 5.046735 AGTGTAGATTCACTCATGTTGCTCT 60.047 40.000 0.00 0.99 44.07 4.09
311 312 5.174395 AGTGTAGATTCACTCATGTTGCTC 58.826 41.667 0.00 0.00 44.07 4.26
312 313 5.157940 AGTGTAGATTCACTCATGTTGCT 57.842 39.130 0.00 0.00 44.07 3.91
313 314 8.648557 TTATAGTGTAGATTCACTCATGTTGC 57.351 34.615 2.59 0.00 45.79 4.17
352 353 9.696572 AATGGACTACTACATACGGATGTATAT 57.303 33.333 20.64 14.14 45.42 0.86
353 354 9.524496 AAATGGACTACTACATACGGATGTATA 57.476 33.333 20.64 13.41 45.42 1.47
354 355 8.304596 CAAATGGACTACTACATACGGATGTAT 58.695 37.037 20.64 13.02 45.42 2.29
355 356 7.503230 TCAAATGGACTACTACATACGGATGTA 59.497 37.037 19.32 19.32 44.77 2.29
357 358 6.745116 TCAAATGGACTACTACATACGGATG 58.255 40.000 5.94 5.94 39.16 3.51
358 359 6.971726 TCAAATGGACTACTACATACGGAT 57.028 37.500 0.00 0.00 0.00 4.18
359 360 6.778834 TTCAAATGGACTACTACATACGGA 57.221 37.500 0.00 0.00 0.00 4.69
360 361 7.926555 AGATTTCAAATGGACTACTACATACGG 59.073 37.037 0.00 0.00 0.00 4.02
361 362 8.873215 AGATTTCAAATGGACTACTACATACG 57.127 34.615 0.00 0.00 0.00 3.06
378 379 9.586732 TCCCTCAATTTCTTTTAGAGATTTCAA 57.413 29.630 0.00 0.00 33.49 2.69
379 380 9.236006 CTCCCTCAATTTCTTTTAGAGATTTCA 57.764 33.333 0.00 0.00 33.49 2.69
380 381 9.237187 ACTCCCTCAATTTCTTTTAGAGATTTC 57.763 33.333 0.00 0.00 33.49 2.17
382 383 9.898152 CTACTCCCTCAATTTCTTTTAGAGATT 57.102 33.333 0.00 0.00 33.49 2.40
383 384 9.273137 TCTACTCCCTCAATTTCTTTTAGAGAT 57.727 33.333 0.00 0.00 33.49 2.75
384 385 8.666129 TCTACTCCCTCAATTTCTTTTAGAGA 57.334 34.615 0.00 0.00 0.00 3.10
385 386 9.726438 TTTCTACTCCCTCAATTTCTTTTAGAG 57.274 33.333 0.00 0.00 0.00 2.43
389 390 9.987272 CAATTTTCTACTCCCTCAATTTCTTTT 57.013 29.630 0.00 0.00 0.00 2.27
390 391 9.147732 ACAATTTTCTACTCCCTCAATTTCTTT 57.852 29.630 0.00 0.00 0.00 2.52
391 392 8.712228 ACAATTTTCTACTCCCTCAATTTCTT 57.288 30.769 0.00 0.00 0.00 2.52
392 393 7.944554 TGACAATTTTCTACTCCCTCAATTTCT 59.055 33.333 0.00 0.00 0.00 2.52
393 394 8.110860 TGACAATTTTCTACTCCCTCAATTTC 57.889 34.615 0.00 0.00 0.00 2.17
394 395 7.177392 CCTGACAATTTTCTACTCCCTCAATTT 59.823 37.037 0.00 0.00 0.00 1.82
395 396 6.660949 CCTGACAATTTTCTACTCCCTCAATT 59.339 38.462 0.00 0.00 0.00 2.32
396 397 6.183347 CCTGACAATTTTCTACTCCCTCAAT 58.817 40.000 0.00 0.00 0.00 2.57
397 398 5.514834 CCCTGACAATTTTCTACTCCCTCAA 60.515 44.000 0.00 0.00 0.00 3.02
398 399 4.019321 CCCTGACAATTTTCTACTCCCTCA 60.019 45.833 0.00 0.00 0.00 3.86
399 400 4.518249 CCCTGACAATTTTCTACTCCCTC 58.482 47.826 0.00 0.00 0.00 4.30
400 401 3.267031 CCCCTGACAATTTTCTACTCCCT 59.733 47.826 0.00 0.00 0.00 4.20
401 402 3.265995 TCCCCTGACAATTTTCTACTCCC 59.734 47.826 0.00 0.00 0.00 4.30
402 403 4.019231 ACTCCCCTGACAATTTTCTACTCC 60.019 45.833 0.00 0.00 0.00 3.85
403 404 5.167303 ACTCCCCTGACAATTTTCTACTC 57.833 43.478 0.00 0.00 0.00 2.59
404 405 4.597507 TGACTCCCCTGACAATTTTCTACT 59.402 41.667 0.00 0.00 0.00 2.57
405 406 4.906618 TGACTCCCCTGACAATTTTCTAC 58.093 43.478 0.00 0.00 0.00 2.59
406 407 5.576563 TTGACTCCCCTGACAATTTTCTA 57.423 39.130 0.00 0.00 0.00 2.10
407 408 4.453480 TTGACTCCCCTGACAATTTTCT 57.547 40.909 0.00 0.00 0.00 2.52
408 409 5.336770 GGATTTGACTCCCCTGACAATTTTC 60.337 44.000 0.00 0.00 0.00 2.29
409 410 4.528206 GGATTTGACTCCCCTGACAATTTT 59.472 41.667 0.00 0.00 0.00 1.82
410 411 4.089361 GGATTTGACTCCCCTGACAATTT 58.911 43.478 0.00 0.00 0.00 1.82
411 412 3.701664 GGATTTGACTCCCCTGACAATT 58.298 45.455 0.00 0.00 0.00 2.32
412 413 3.372440 GGATTTGACTCCCCTGACAAT 57.628 47.619 0.00 0.00 0.00 2.71
413 414 2.879103 GGATTTGACTCCCCTGACAA 57.121 50.000 0.00 0.00 0.00 3.18
453 454 5.879777 AGCATAATGTTTTTGGGTAATTGCC 59.120 36.000 3.57 3.57 0.00 4.52
461 462 8.776376 ATAAAAGTGAGCATAATGTTTTTGGG 57.224 30.769 0.00 0.00 0.00 4.12
464 465 8.720562 GGCAATAAAAGTGAGCATAATGTTTTT 58.279 29.630 0.00 0.00 0.00 1.94
481 482 8.787852 GTTTGGAAATGGTTTATGGCAATAAAA 58.212 29.630 7.88 0.00 39.40 1.52
511 512 8.918202 AGGATTTGACACAATTTGAGTTACTA 57.082 30.769 2.79 0.00 0.00 1.82
513 514 7.084486 GGAGGATTTGACACAATTTGAGTTAC 58.916 38.462 2.79 0.00 0.00 2.50
514 515 6.775142 TGGAGGATTTGACACAATTTGAGTTA 59.225 34.615 2.79 0.00 0.00 2.24
515 516 5.598005 TGGAGGATTTGACACAATTTGAGTT 59.402 36.000 2.79 0.00 0.00 3.01
516 517 5.139727 TGGAGGATTTGACACAATTTGAGT 58.860 37.500 2.79 0.63 0.00 3.41
517 518 5.710513 TGGAGGATTTGACACAATTTGAG 57.289 39.130 2.79 0.00 0.00 3.02
524 525 5.647658 GTGATGTAATGGAGGATTTGACACA 59.352 40.000 0.00 0.00 0.00 3.72
525 526 5.066505 GGTGATGTAATGGAGGATTTGACAC 59.933 44.000 0.00 0.00 0.00 3.67
538 539 4.202080 CCTGCCAATCAAGGTGATGTAATG 60.202 45.833 0.00 0.00 37.15 1.90
541 542 2.945440 GCCTGCCAATCAAGGTGATGTA 60.945 50.000 0.00 0.00 37.15 2.29
545 546 1.304381 GGCCTGCCAATCAAGGTGA 60.304 57.895 2.58 0.00 35.81 4.02
547 548 2.037847 GGGCCTGCCAATCAAGGT 59.962 61.111 10.86 0.00 37.98 3.50
560 561 2.442830 GGGCAGGATTCAAGGGCC 60.443 66.667 0.00 0.00 43.86 5.80
564 565 2.521547 AAGAAGGGGCAGGATTCAAG 57.478 50.000 0.00 0.00 0.00 3.02
566 567 3.563479 GGTTAAAGAAGGGGCAGGATTCA 60.563 47.826 0.00 0.00 0.00 2.57
567 568 3.024547 GGTTAAAGAAGGGGCAGGATTC 58.975 50.000 0.00 0.00 0.00 2.52
625 626 5.010012 GGATTTGATATTGACCACACCATCC 59.990 44.000 0.00 0.00 0.00 3.51
626 627 5.593909 TGGATTTGATATTGACCACACCATC 59.406 40.000 0.00 0.00 0.00 3.51
679 692 2.039879 AGGTTTGTGGTAGGATGTGGAC 59.960 50.000 0.00 0.00 0.00 4.02
1387 1640 1.216678 GTGGAGATGAGAGGAGGAGGA 59.783 57.143 0.00 0.00 0.00 3.71
1406 1659 3.177228 ACAGCATAAGGAACTGAGAGGT 58.823 45.455 0.00 0.00 40.86 3.85
1421 1674 5.428253 ACGTAATCCACAGAATAACAGCAT 58.572 37.500 0.00 0.00 0.00 3.79
1453 1706 2.582052 AGCAGACGGGTGAAAAATGAA 58.418 42.857 0.00 0.00 0.00 2.57
1454 1707 2.270352 AGCAGACGGGTGAAAAATGA 57.730 45.000 0.00 0.00 0.00 2.57
1480 1733 1.935917 CATGAAAATGGAGCGCGCG 60.936 57.895 28.44 28.44 0.00 6.86
1515 1768 3.243367 ACGAAAGCTGCAGCAAATGTTTA 60.243 39.130 38.24 0.00 45.16 2.01
1524 1777 0.871163 TTTTGCACGAAAGCTGCAGC 60.871 50.000 31.53 31.53 44.46 5.25
1545 1798 8.459521 TTTTCGCCAAGTATTATTCAATGTTG 57.540 30.769 0.00 0.00 0.00 3.33
1555 1808 5.065474 CGGAAGGAATTTTCGCCAAGTATTA 59.935 40.000 0.00 0.00 29.57 0.98
1559 1812 1.539827 CGGAAGGAATTTTCGCCAAGT 59.460 47.619 0.00 0.00 29.57 3.16
1560 1813 1.810151 TCGGAAGGAATTTTCGCCAAG 59.190 47.619 0.00 0.00 37.70 3.61
1561 1814 1.810151 CTCGGAAGGAATTTTCGCCAA 59.190 47.619 0.00 0.00 37.70 4.52
1562 1815 1.271163 ACTCGGAAGGAATTTTCGCCA 60.271 47.619 0.00 0.00 37.70 5.69
1563 1816 1.450025 ACTCGGAAGGAATTTTCGCC 58.550 50.000 0.00 0.00 37.70 5.54
1564 1817 3.554259 AAACTCGGAAGGAATTTTCGC 57.446 42.857 0.00 0.00 37.70 4.70
1565 1818 5.490213 CGATAAACTCGGAAGGAATTTTCG 58.510 41.667 0.00 0.00 43.82 3.46
1579 1832 3.782889 ATTTGCAAGCCCGATAAACTC 57.217 42.857 0.00 0.00 0.00 3.01
1587 1840 2.083167 ATTGTCAATTTGCAAGCCCG 57.917 45.000 0.00 0.00 0.00 6.13
1615 1869 3.704061 ACAAGGCCACAAAAGTACACAAT 59.296 39.130 5.01 0.00 0.00 2.71
1616 1870 3.093057 ACAAGGCCACAAAAGTACACAA 58.907 40.909 5.01 0.00 0.00 3.33
1634 1898 5.242434 ACATATCAAAACTGACGCCTACAA 58.758 37.500 0.00 0.00 0.00 2.41
1659 1923 4.220693 TGGGAATGAATCAACTCGTCAT 57.779 40.909 0.00 0.00 33.41 3.06
1673 1937 8.774586 CCTACGTTCTCTAAATTATTGGGAATG 58.225 37.037 0.00 0.00 0.00 2.67
1720 1984 8.960591 TGCCAAATTTTTGACCTTGAATTTAAA 58.039 25.926 4.63 0.00 40.55 1.52
1728 1992 5.557891 TTTGTGCCAAATTTTTGACCTTG 57.442 34.783 4.63 0.00 40.55 3.61
1731 1995 7.020914 TGTATTTTGTGCCAAATTTTTGACC 57.979 32.000 4.63 0.00 40.55 4.02
1733 1997 9.912634 TTTTTGTATTTTGTGCCAAATTTTTGA 57.087 22.222 4.63 0.00 40.55 2.69
1734 1998 9.949377 GTTTTTGTATTTTGTGCCAAATTTTTG 57.051 25.926 1.89 0.00 37.90 2.44
1735 1999 8.854312 CGTTTTTGTATTTTGTGCCAAATTTTT 58.146 25.926 1.89 0.00 0.00 1.94
1756 2020 5.933463 TCCGTCATGGTTTATAAGTCGTTTT 59.067 36.000 0.00 0.00 39.52 2.43
1758 2022 5.075858 TCCGTCATGGTTTATAAGTCGTT 57.924 39.130 0.00 0.00 39.52 3.85
1760 2024 4.049186 CCTCCGTCATGGTTTATAAGTCG 58.951 47.826 0.00 0.00 39.52 4.18
1774 2038 3.256631 GTCTTTAAGTACCACCTCCGTCA 59.743 47.826 0.00 0.00 0.00 4.35
1778 2042 7.618137 TGATAAAGTCTTTAAGTACCACCTCC 58.382 38.462 9.07 0.00 0.00 4.30
1794 2058 5.671329 GCCGTGAACTTGTGATGATAAAGTC 60.671 44.000 0.00 0.00 33.09 3.01
1795 2059 4.154195 GCCGTGAACTTGTGATGATAAAGT 59.846 41.667 0.00 0.00 35.70 2.66
1796 2060 4.437390 GGCCGTGAACTTGTGATGATAAAG 60.437 45.833 0.00 0.00 0.00 1.85
1797 2061 3.438781 GGCCGTGAACTTGTGATGATAAA 59.561 43.478 0.00 0.00 0.00 1.40
1799 2063 2.027653 TGGCCGTGAACTTGTGATGATA 60.028 45.455 0.00 0.00 0.00 2.15
1800 2064 1.271325 TGGCCGTGAACTTGTGATGAT 60.271 47.619 0.00 0.00 0.00 2.45
1801 2065 0.107643 TGGCCGTGAACTTGTGATGA 59.892 50.000 0.00 0.00 0.00 2.92
1802 2066 0.950836 TTGGCCGTGAACTTGTGATG 59.049 50.000 0.00 0.00 0.00 3.07
1861 2125 2.987232 AGGACAAGAGTAATTTCGGCC 58.013 47.619 0.00 0.00 0.00 6.13
1862 2126 3.374367 GGAAGGACAAGAGTAATTTCGGC 59.626 47.826 0.00 0.00 0.00 5.54
1863 2127 4.575885 TGGAAGGACAAGAGTAATTTCGG 58.424 43.478 0.00 0.00 0.00 4.30
1864 2128 6.149474 ACAATGGAAGGACAAGAGTAATTTCG 59.851 38.462 0.00 0.00 0.00 3.46
1865 2129 7.308435 CACAATGGAAGGACAAGAGTAATTTC 58.692 38.462 0.00 0.00 0.00 2.17
1866 2130 6.209391 CCACAATGGAAGGACAAGAGTAATTT 59.791 38.462 0.00 0.00 40.96 1.82
1867 2131 5.711976 CCACAATGGAAGGACAAGAGTAATT 59.288 40.000 0.00 0.00 40.96 1.40
1868 2132 5.256474 CCACAATGGAAGGACAAGAGTAAT 58.744 41.667 0.00 0.00 40.96 1.89
1869 2133 4.506625 CCCACAATGGAAGGACAAGAGTAA 60.507 45.833 0.00 0.00 40.96 2.24
1870 2134 3.009033 CCCACAATGGAAGGACAAGAGTA 59.991 47.826 0.00 0.00 40.96 2.59
1915 2179 6.916360 AAGATGCTTCACTAAATTTTCCCA 57.084 33.333 0.00 0.00 0.00 4.37
1949 2213 4.866508 AATGTGGACTAGAACGAACAGA 57.133 40.909 0.00 0.00 0.00 3.41
1970 2234 2.321719 GTCCCCCAAACCTGCTAAAAA 58.678 47.619 0.00 0.00 0.00 1.94
2065 2329 2.358737 GGACGGCACTGTCAAGGG 60.359 66.667 11.53 0.00 40.72 3.95
2078 2342 2.029020 TGAGAGTGACATGAAAGGGACG 60.029 50.000 0.00 0.00 0.00 4.79
2131 2395 8.500753 TGTTAATTAAGCACGAGGTCAAATAT 57.499 30.769 0.00 0.00 0.00 1.28
2207 2472 6.055588 GCCTACAGTGGATAAAGAAATGCTA 58.944 40.000 0.00 0.00 0.00 3.49
2309 2598 5.507985 GCATTGCTCCAATAACCACCTAATC 60.508 44.000 0.16 0.00 32.35 1.75
2411 2701 9.959721 ATAGGATGCTTTAGTACTCAAAAGAAA 57.040 29.630 18.33 8.59 35.19 2.52
2416 2706 6.986817 GCTGATAGGATGCTTTAGTACTCAAA 59.013 38.462 0.00 0.00 0.00 2.69
2445 2735 2.817258 CAGTTCAATGGGGCGACTTAAA 59.183 45.455 0.00 0.00 0.00 1.52
2453 2743 4.220602 AGTTCAAATACAGTTCAATGGGGC 59.779 41.667 0.00 0.00 0.00 5.80
2591 2881 8.122481 AGGGAGTGGTAAATTTCTCCAAATTAT 58.878 33.333 19.77 5.79 45.65 1.28
2592 2882 7.475299 AGGGAGTGGTAAATTTCTCCAAATTA 58.525 34.615 19.77 0.00 45.65 1.40
2593 2883 6.322931 AGGGAGTGGTAAATTTCTCCAAATT 58.677 36.000 19.77 9.17 45.65 1.82
2594 2884 5.903923 AGGGAGTGGTAAATTTCTCCAAAT 58.096 37.500 19.77 11.24 45.65 2.32
2595 2885 5.163034 TGAGGGAGTGGTAAATTTCTCCAAA 60.163 40.000 19.77 6.90 45.65 3.28
2637 2927 2.288729 AGAAAAACGACCGTTAACTGGC 59.711 45.455 8.28 4.75 37.35 4.85
2645 2935 4.886247 TGAATTCAAGAAAAACGACCGT 57.114 36.364 5.45 0.00 0.00 4.83
2671 2961 5.127682 AGGAAATGCCAGATAAATTGGTGAC 59.872 40.000 0.00 0.00 40.02 3.67
2682 2972 7.451566 AGTTAAAAGTTGTAGGAAATGCCAGAT 59.548 33.333 0.00 0.00 40.02 2.90
2688 2978 9.280174 TGGTAGAGTTAAAAGTTGTAGGAAATG 57.720 33.333 0.00 0.00 0.00 2.32
2765 3055 5.350504 TTTTGCCCAAAATTGAGAACTGA 57.649 34.783 2.26 0.00 35.57 3.41
2773 3063 4.635324 AGTGTCTGTTTTTGCCCAAAATTG 59.365 37.500 6.98 2.14 39.69 2.32
2792 3083 3.252284 CAGGTCCCTGGCCAGTGT 61.252 66.667 30.63 7.82 40.17 3.55
2924 3303 9.997482 TTTATGTGTTGAAGACTTGAAGTTAAC 57.003 29.630 0.00 0.00 0.00 2.01
2949 3328 8.602472 TTTGTGGTTAGATAGCCCAAAATATT 57.398 30.769 6.81 0.00 30.34 1.28
3015 3394 3.609853 TGTGAGGGATCAGCACATAAAC 58.390 45.455 9.57 0.00 37.60 2.01
3320 3701 5.591067 ACCTCGTTAGAATTGGACACAAAAA 59.409 36.000 0.00 0.00 40.55 1.94
3611 3992 3.753797 GGACTGGATTTCTCAACTGGAAC 59.246 47.826 0.00 0.00 0.00 3.62
3698 4079 1.141053 GGGTGTAGCAGTAGAATGGGG 59.859 57.143 0.00 0.00 0.00 4.96
3743 4124 1.003355 AACAGGCAGTGGGACATCG 60.003 57.895 0.00 0.00 44.52 3.84
3762 4143 2.605338 CCTTGCTGTGTTGTTCCATTCG 60.605 50.000 0.00 0.00 0.00 3.34
3811 4192 6.913873 GCATTTTGCATTATCCAAACTGAT 57.086 33.333 3.60 0.00 44.26 2.90
3857 4239 3.386402 GGACTCCATCTTCTAAGACCTGG 59.614 52.174 6.15 6.15 37.98 4.45
3966 4348 5.594317 AGAAATTAGCACCGGCATTAATTCT 59.406 36.000 0.00 0.88 44.61 2.40
4016 4398 0.256752 TCTCTGTTGGATGGCCCATG 59.743 55.000 0.00 0.00 46.10 3.66
4070 4452 2.386935 GGGGGCCATGCTTAGGACT 61.387 63.158 4.39 0.00 33.44 3.85
4292 4757 1.000827 CGTATGCTGCTACCTGGAGAG 60.001 57.143 0.00 0.00 36.08 3.20
4293 4758 1.032794 CGTATGCTGCTACCTGGAGA 58.967 55.000 0.00 0.00 36.08 3.71
4311 4776 3.227147 CATCTTCTTCGCTACCGTATCG 58.773 50.000 0.00 0.00 35.54 2.92
4320 4785 2.777832 AGAAAGCCATCTTCTTCGCT 57.222 45.000 0.00 0.00 0.00 4.93
4405 4870 0.813210 GCGAGCATTTCTCCCCTGAG 60.813 60.000 0.00 0.00 38.62 3.35
4410 4875 2.411904 CATAGAGCGAGCATTTCTCCC 58.588 52.381 0.00 0.00 38.62 4.30
4414 4879 3.060602 GGTACCATAGAGCGAGCATTTC 58.939 50.000 7.15 0.00 0.00 2.17
4434 4902 4.636206 GCAGGTAAAGTATCTCCAGTTTGG 59.364 45.833 0.00 0.00 39.43 3.28
4469 4937 4.201950 GCGCATCTGATTGATTTGTAGGTT 60.202 41.667 0.30 0.00 32.05 3.50
4585 5054 2.376165 GGGGGTGGTAGCTCCTTCC 61.376 68.421 12.43 10.53 37.07 3.46
4676 5145 1.241315 ACGGTTTGAAATCCCCTGCG 61.241 55.000 0.00 0.00 0.00 5.18
4738 5213 4.751600 TCTGATGGCATCAATAAACTAGCG 59.248 41.667 28.50 14.21 39.11 4.26
4846 5321 3.179265 CGGTGCGGTTACAGCTCG 61.179 66.667 9.09 8.85 35.90 5.03
4860 5335 5.163301 ACAGGATAATAACAGAATCTGCGGT 60.163 40.000 10.62 0.00 34.37 5.68
4866 5341 9.202273 GAGTCATCACAGGATAATAACAGAATC 57.798 37.037 0.00 0.00 30.87 2.52
4930 5405 1.361204 TCTTGGATGAGCTCCCACAA 58.639 50.000 12.15 11.95 44.23 3.33
4952 5427 1.858458 CGAAGACTCAACTTGTTCGCA 59.142 47.619 0.00 0.00 34.25 5.10
4954 5429 2.470821 ACCGAAGACTCAACTTGTTCG 58.529 47.619 5.64 5.64 39.71 3.95
4955 5430 5.048507 ACTTACCGAAGACTCAACTTGTTC 58.951 41.667 0.00 0.00 36.45 3.18
4956 5431 4.809426 CACTTACCGAAGACTCAACTTGTT 59.191 41.667 0.00 0.00 36.45 2.83
4957 5432 4.098960 TCACTTACCGAAGACTCAACTTGT 59.901 41.667 0.00 0.00 36.45 3.16
4971 5617 1.586422 CCTGATGCCATCACTTACCG 58.414 55.000 2.53 0.00 35.06 4.02
4972 5618 1.312815 GCCTGATGCCATCACTTACC 58.687 55.000 2.53 0.00 35.06 2.85
4997 5643 2.021457 ACACTCCAACAAACTTTCCGG 58.979 47.619 0.00 0.00 0.00 5.14
5063 5710 1.533731 CTTTTCCGCGCTTTGGTAGAA 59.466 47.619 5.56 0.00 0.00 2.10
5064 5711 1.153353 CTTTTCCGCGCTTTGGTAGA 58.847 50.000 5.56 0.00 0.00 2.59
5068 5715 0.248866 AACACTTTTCCGCGCTTTGG 60.249 50.000 5.56 0.00 0.00 3.28
5074 5721 1.196200 CAACCAAACACTTTTCCGCG 58.804 50.000 0.00 0.00 0.00 6.46
5127 5775 1.295792 ATAACAAGCGGCGTATGTGG 58.704 50.000 17.78 1.79 0.00 4.17
5169 5817 2.639327 GCCGAATTGCTTGTGGCCT 61.639 57.895 3.32 0.00 39.83 5.19
5170 5818 2.125952 GCCGAATTGCTTGTGGCC 60.126 61.111 0.00 0.00 39.83 5.36
5176 5824 0.539438 TCTTGGTGGCCGAATTGCTT 60.539 50.000 0.00 0.00 0.00 3.91
5178 5826 0.316841 TTTCTTGGTGGCCGAATTGC 59.683 50.000 0.00 0.00 0.00 3.56
5184 5832 1.605202 CCACAAATTTCTTGGTGGCCG 60.605 52.381 11.28 0.00 46.90 6.13
5193 5841 6.482973 CCACACTTTTTATGCCACAAATTTCT 59.517 34.615 0.00 0.00 0.00 2.52
5194 5842 6.657888 CCACACTTTTTATGCCACAAATTTC 58.342 36.000 0.00 0.00 0.00 2.17
5198 5846 3.118629 TGCCACACTTTTTATGCCACAAA 60.119 39.130 0.00 0.00 0.00 2.83
5233 5881 0.664166 CGTCAGGCATGTTTGGTTGC 60.664 55.000 0.00 0.00 38.14 4.17
5246 5894 1.557443 GAACAAGCGTCACCGTCAGG 61.557 60.000 0.00 0.00 45.13 3.86
5252 5900 2.650608 GACAATTGAACAAGCGTCACC 58.349 47.619 13.59 0.00 0.00 4.02
5253 5901 2.298300 CGACAATTGAACAAGCGTCAC 58.702 47.619 13.59 0.00 0.00 3.67
5256 5904 1.263217 GTCCGACAATTGAACAAGCGT 59.737 47.619 13.59 0.00 0.00 5.07
5300 5948 9.072294 CAAGATAATATTTTTCGCCGACTTTTT 57.928 29.630 0.00 0.00 0.00 1.94
5301 5949 7.220108 GCAAGATAATATTTTTCGCCGACTTTT 59.780 33.333 0.00 0.00 0.00 2.27
5302 5950 6.691388 GCAAGATAATATTTTTCGCCGACTTT 59.309 34.615 0.00 0.00 0.00 2.66
5335 5983 6.016777 ACGTCGTATACTAATTTACTGAGGGG 60.017 42.308 0.00 0.00 0.00 4.79
5350 5998 6.580963 TCAAGTCTCTAGAACGTCGTATAC 57.419 41.667 0.00 0.00 0.00 1.47
5362 6010 7.442656 TCCCTTTGTAAACTTCAAGTCTCTAG 58.557 38.462 0.00 0.00 0.00 2.43
5364 6012 6.248569 TCCCTTTGTAAACTTCAAGTCTCT 57.751 37.500 0.00 0.00 0.00 3.10
5377 6025 4.202111 GCTTCAAAAGTGCTCCCTTTGTAA 60.202 41.667 9.48 4.56 34.94 2.41
5382 6030 2.371658 AGCTTCAAAAGTGCTCCCTT 57.628 45.000 0.00 0.00 30.41 3.95
5389 6037 6.363577 TCTTGTGTAGAAGCTTCAAAAGTG 57.636 37.500 27.57 11.96 31.12 3.16
5390 6038 7.391148 TTTCTTGTGTAGAAGCTTCAAAAGT 57.609 32.000 27.57 9.68 43.52 2.66
5401 6049 3.977999 TCCCTCCCTTTTCTTGTGTAGAA 59.022 43.478 0.00 0.00 41.11 2.10
5416 6064 0.032217 TTGGCAATCCATTCCCTCCC 60.032 55.000 0.00 0.00 43.05 4.30
5419 6067 0.325577 GGGTTGGCAATCCATTCCCT 60.326 55.000 24.51 0.00 45.42 4.20
5420 6068 2.211375 GGGTTGGCAATCCATTCCC 58.789 57.895 24.51 14.69 44.01 3.97
5422 6070 3.493176 GCTATTGGGTTGGCAATCCATTC 60.493 47.826 31.49 16.82 43.05 2.67
5432 6081 1.453197 GGACCGGCTATTGGGTTGG 60.453 63.158 0.00 0.00 36.46 3.77
5454 6103 8.973835 TTCCGTAATTTCACATTATTTTGTCC 57.026 30.769 0.00 0.00 0.00 4.02
5489 6146 6.040616 TCGGGTCTAGGTCTCAAATTTAGATC 59.959 42.308 0.00 0.00 0.00 2.75
5492 6149 5.593010 CTCGGGTCTAGGTCTCAAATTTAG 58.407 45.833 0.00 0.00 0.00 1.85
5502 6159 1.067821 CAGATTGCTCGGGTCTAGGTC 59.932 57.143 0.00 0.00 0.00 3.85
5507 6164 2.185350 CGCAGATTGCTCGGGTCT 59.815 61.111 0.00 0.00 42.25 3.85
5519 6176 0.321919 AGAGCTGGATTTTGCGCAGA 60.322 50.000 11.31 2.14 0.00 4.26
5523 6180 3.686726 AGTTTAGAGAGCTGGATTTTGCG 59.313 43.478 0.00 0.00 0.00 4.85
5524 6181 6.743575 TTAGTTTAGAGAGCTGGATTTTGC 57.256 37.500 0.00 0.00 0.00 3.68
5533 6190 7.947282 AGATCGCTATTTTAGTTTAGAGAGCT 58.053 34.615 0.00 0.00 36.56 4.09
5559 6216 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
5560 6217 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
5561 6218 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
5562 6219 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
5563 6220 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
5570 6227 9.401058 GTGTACTACTCCCTCTGTAAACTAATA 57.599 37.037 0.00 0.00 0.00 0.98
5571 6228 7.892241 TGTGTACTACTCCCTCTGTAAACTAAT 59.108 37.037 0.00 0.00 0.00 1.73
5572 6229 7.233632 TGTGTACTACTCCCTCTGTAAACTAA 58.766 38.462 0.00 0.00 0.00 2.24
5573 6230 6.782986 TGTGTACTACTCCCTCTGTAAACTA 58.217 40.000 0.00 0.00 0.00 2.24
5574 6231 5.638133 TGTGTACTACTCCCTCTGTAAACT 58.362 41.667 0.00 0.00 0.00 2.66
5575 6232 5.972107 TGTGTACTACTCCCTCTGTAAAC 57.028 43.478 0.00 0.00 0.00 2.01
5576 6233 6.309357 TCTTGTGTACTACTCCCTCTGTAAA 58.691 40.000 0.00 0.00 0.00 2.01
5577 6234 5.884322 TCTTGTGTACTACTCCCTCTGTAA 58.116 41.667 0.00 0.00 0.00 2.41
5578 6235 5.509832 TCTTGTGTACTACTCCCTCTGTA 57.490 43.478 0.00 0.00 0.00 2.74
5579 6236 4.383931 TCTTGTGTACTACTCCCTCTGT 57.616 45.455 0.00 0.00 0.00 3.41
5580 6237 5.923733 AATCTTGTGTACTACTCCCTCTG 57.076 43.478 0.00 0.00 0.00 3.35
5581 6238 6.936968 AAAATCTTGTGTACTACTCCCTCT 57.063 37.500 0.00 0.00 0.00 3.69
5582 6239 7.266400 CCTAAAATCTTGTGTACTACTCCCTC 58.734 42.308 0.00 0.00 0.00 4.30
5583 6240 6.156429 CCCTAAAATCTTGTGTACTACTCCCT 59.844 42.308 0.00 0.00 0.00 4.20
5584 6241 6.070366 ACCCTAAAATCTTGTGTACTACTCCC 60.070 42.308 0.00 0.00 0.00 4.30
5585 6242 6.944096 ACCCTAAAATCTTGTGTACTACTCC 58.056 40.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.