Multiple sequence alignment - TraesCS2B01G046200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G046200 chr2B 100.000 4791 0 0 1 4791 23091543 23096333 0.000000e+00 8848
1 TraesCS2B01G046200 chr2B 96.491 2992 96 9 1 2989 671376735 671379720 0.000000e+00 4935
2 TraesCS2B01G046200 chr2B 96.468 2718 91 5 251 2968 679040260 679042972 0.000000e+00 4482
3 TraesCS2B01G046200 chr2B 92.136 2696 178 26 247 2922 665882784 665885465 0.000000e+00 3773
4 TraesCS2B01G046200 chr2B 96.937 1959 52 8 2835 4791 671379522 671381474 0.000000e+00 3278
5 TraesCS2B01G046200 chr2B 95.452 1935 79 7 2859 4791 679042796 679044723 0.000000e+00 3077
6 TraesCS2B01G046200 chr7A 90.760 4448 305 71 370 4791 679031728 679027361 0.000000e+00 5840
7 TraesCS2B01G046200 chr7A 92.217 1953 121 28 2849 4791 23541051 23542982 0.000000e+00 2736
8 TraesCS2B01G046200 chr1B 96.397 2970 101 6 1 2968 604129859 604132824 0.000000e+00 4887
9 TraesCS2B01G046200 chr1B 96.124 1935 67 7 2859 4791 604132647 604134575 0.000000e+00 3151
10 TraesCS2B01G046200 chr1B 87.500 1424 136 25 1616 3033 547563981 547565368 0.000000e+00 1605
11 TraesCS2B01G046200 chr6B 95.953 2990 117 4 1 2989 177559008 177556022 0.000000e+00 4848
12 TraesCS2B01G046200 chr6B 91.744 2907 188 36 1 2894 704379442 704382309 0.000000e+00 3991
13 TraesCS2B01G046200 chr6B 95.606 1957 77 8 2838 4791 177556217 177554267 0.000000e+00 3129
14 TraesCS2B01G046200 chr6B 92.363 1951 121 23 2849 4791 704382196 704384126 0.000000e+00 2752
15 TraesCS2B01G046200 chr3B 87.618 4030 402 63 243 4226 736161057 736165035 0.000000e+00 4588
16 TraesCS2B01G046200 chr3B 91.081 2904 205 36 1 2894 587974637 587977496 0.000000e+00 3879
17 TraesCS2B01G046200 chr3B 88.077 2818 275 40 65 2870 725398288 725401056 0.000000e+00 3286
18 TraesCS2B01G046200 chr3B 95.349 129 6 0 2907 3035 543576992 543576864 6.290000e-49 206
19 TraesCS2B01G046200 chr3B 93.130 131 9 0 2907 3037 698397247 698397377 4.890000e-45 193
20 TraesCS2B01G046200 chr5B 90.959 2909 200 37 1 2894 711442588 711439728 0.000000e+00 3856
21 TraesCS2B01G046200 chr4B 91.630 2724 200 21 243 2946 66831523 66834238 0.000000e+00 3742
22 TraesCS2B01G046200 chr4B 92.912 1947 116 19 2849 4791 161608894 161610822 0.000000e+00 2811
23 TraesCS2B01G046200 chr2A 92.008 1977 125 29 2826 4791 733320605 733318651 0.000000e+00 2745
24 TraesCS2B01G046200 chr7B 88.636 176 15 3 1 176 412095761 412095931 4.860000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G046200 chr2B 23091543 23096333 4790 False 8848.0 8848 100.0000 1 4791 1 chr2B.!!$F1 4790
1 TraesCS2B01G046200 chr2B 671376735 671381474 4739 False 4106.5 4935 96.7140 1 4791 2 chr2B.!!$F3 4790
2 TraesCS2B01G046200 chr2B 679040260 679044723 4463 False 3779.5 4482 95.9600 251 4791 2 chr2B.!!$F4 4540
3 TraesCS2B01G046200 chr2B 665882784 665885465 2681 False 3773.0 3773 92.1360 247 2922 1 chr2B.!!$F2 2675
4 TraesCS2B01G046200 chr7A 679027361 679031728 4367 True 5840.0 5840 90.7600 370 4791 1 chr7A.!!$R1 4421
5 TraesCS2B01G046200 chr7A 23541051 23542982 1931 False 2736.0 2736 92.2170 2849 4791 1 chr7A.!!$F1 1942
6 TraesCS2B01G046200 chr1B 604129859 604134575 4716 False 4019.0 4887 96.2605 1 4791 2 chr1B.!!$F2 4790
7 TraesCS2B01G046200 chr1B 547563981 547565368 1387 False 1605.0 1605 87.5000 1616 3033 1 chr1B.!!$F1 1417
8 TraesCS2B01G046200 chr6B 177554267 177559008 4741 True 3988.5 4848 95.7795 1 4791 2 chr6B.!!$R1 4790
9 TraesCS2B01G046200 chr6B 704379442 704384126 4684 False 3371.5 3991 92.0535 1 4791 2 chr6B.!!$F1 4790
10 TraesCS2B01G046200 chr3B 736161057 736165035 3978 False 4588.0 4588 87.6180 243 4226 1 chr3B.!!$F4 3983
11 TraesCS2B01G046200 chr3B 587974637 587977496 2859 False 3879.0 3879 91.0810 1 2894 1 chr3B.!!$F1 2893
12 TraesCS2B01G046200 chr3B 725398288 725401056 2768 False 3286.0 3286 88.0770 65 2870 1 chr3B.!!$F3 2805
13 TraesCS2B01G046200 chr5B 711439728 711442588 2860 True 3856.0 3856 90.9590 1 2894 1 chr5B.!!$R1 2893
14 TraesCS2B01G046200 chr4B 66831523 66834238 2715 False 3742.0 3742 91.6300 243 2946 1 chr4B.!!$F1 2703
15 TraesCS2B01G046200 chr4B 161608894 161610822 1928 False 2811.0 2811 92.9120 2849 4791 1 chr4B.!!$F2 1942
16 TraesCS2B01G046200 chr2A 733318651 733320605 1954 True 2745.0 2745 92.0080 2826 4791 1 chr2A.!!$R1 1965

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 92 0.169009 GGAATTGAAGCAGTGACGGC 59.831 55.000 0.00 0.0 0.00 5.68 F
738 762 0.593128 CGACAAGCACCCCTTTGAAG 59.407 55.000 0.00 0.0 0.00 3.02 F
829 853 1.004745 ACGCACAAGGGGATGAAGATT 59.995 47.619 0.00 0.0 0.00 2.40 F
2208 2235 1.017701 AAGCTACCACCGCGCTAAAC 61.018 55.000 5.56 0.0 32.90 2.01 F
2475 2510 1.456296 CTCAGCTGCAGTTTGCCATA 58.544 50.000 16.64 0.0 44.23 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1853 1878 0.534203 TGGACGGTCAGCAAAGAACC 60.534 55.000 10.76 0.0 0.00 3.62 R
2208 2235 0.460284 ACGTTAGCAATCTCGGCTGG 60.460 55.000 0.00 0.0 42.62 4.85 R
2713 2793 2.609350 CACAATGCTTACAACATGGCC 58.391 47.619 0.00 0.0 0.00 5.36 R
3211 3586 0.938008 GGCAGTAGTATTCGCCTTGC 59.062 55.000 0.00 0.0 41.50 4.01 R
4060 4438 4.442052 GCAGATCCAGTACAACTAGCATGA 60.442 45.833 0.00 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 73 2.356796 CGCGCGTGCCAAGAAAAAG 61.357 57.895 24.19 0.00 38.08 2.27
86 89 5.836347 AGAAAAAGGAATTGAAGCAGTGAC 58.164 37.500 0.00 0.00 0.00 3.67
89 92 0.169009 GGAATTGAAGCAGTGACGGC 59.831 55.000 0.00 0.00 0.00 5.68
128 131 1.029408 AACGCTGACAAGTGGTTGCA 61.029 50.000 0.00 0.00 38.30 4.08
176 179 6.992063 TGAAAAATTGCCAACTGCTAAAAA 57.008 29.167 0.00 0.00 42.00 1.94
201 205 9.466497 AAATGTCTACATCACTGATGGTTTATT 57.534 29.630 20.78 12.11 43.60 1.40
221 225 5.779529 ATTGCATTTCGCCTAATGAGATT 57.220 34.783 9.06 0.00 41.33 2.40
226 230 6.486320 TGCATTTCGCCTAATGAGATTAATCA 59.514 34.615 17.56 0.00 41.33 2.57
513 536 3.373748 TCGAATTTGATGTGATCCGTTGG 59.626 43.478 0.00 0.00 0.00 3.77
534 557 7.810282 CGTTGGGATAAACATGTTATTCAAACA 59.190 33.333 12.39 9.03 34.31 2.83
571 595 7.844009 TCTCGTACCTGGTTTTTCTATTACAT 58.156 34.615 3.84 0.00 0.00 2.29
738 762 0.593128 CGACAAGCACCCCTTTGAAG 59.407 55.000 0.00 0.00 0.00 3.02
829 853 1.004745 ACGCACAAGGGGATGAAGATT 59.995 47.619 0.00 0.00 0.00 2.40
992 1017 8.597662 ATTAAGAAAACTAACGAGTACAGCAA 57.402 30.769 0.00 0.00 33.58 3.91
999 1024 3.402628 AACGAGTACAGCAAAGGTGAT 57.597 42.857 2.94 0.00 34.87 3.06
1083 1108 7.040473 GGAACGAAAGAGAGGTATCATTCTA 57.960 40.000 0.00 0.00 0.00 2.10
1167 1192 5.182950 TGAATATTTTGACGAGCACAACCAT 59.817 36.000 0.00 0.00 0.00 3.55
1853 1878 2.018544 CTGAGGAGACGCTAGGACG 58.981 63.158 0.00 0.00 39.50 4.79
2208 2235 1.017701 AAGCTACCACCGCGCTAAAC 61.018 55.000 5.56 0.00 32.90 2.01
2244 2271 4.996788 AACGTATTTACCGATGGAGAGT 57.003 40.909 0.00 0.00 0.00 3.24
2391 2424 6.543465 TGAGGATGCCATGTTTAATGAACTAG 59.457 38.462 0.00 0.00 39.08 2.57
2475 2510 1.456296 CTCAGCTGCAGTTTGCCATA 58.544 50.000 16.64 0.00 44.23 2.74
2522 2557 5.122554 TGTTCAATGAAATGCAATTGCCATC 59.877 36.000 26.94 20.68 36.10 3.51
2692 2767 4.640201 GCCATATTTGCTCAACTGAGGTTA 59.360 41.667 8.74 0.00 42.29 2.85
2713 2793 6.531240 GGTTACCATGTTTAATGAATGCAGTG 59.469 38.462 0.00 0.00 0.00 3.66
2860 3130 8.623903 CATTTGCCATGTCTAAATGTACTACAT 58.376 33.333 13.89 0.00 41.31 2.29
2874 3144 8.574251 AATGTACTACATTTGCCATGTCTAAA 57.426 30.769 8.41 0.00 45.80 1.85
2955 3293 5.932619 TGCCATGTCTAATGTACTACAGT 57.067 39.130 0.00 0.00 0.00 3.55
2956 3294 6.294361 TGCCATGTCTAATGTACTACAGTT 57.706 37.500 0.00 0.00 0.00 3.16
2957 3295 6.106003 TGCCATGTCTAATGTACTACAGTTG 58.894 40.000 0.00 0.00 0.00 3.16
2958 3296 5.006746 GCCATGTCTAATGTACTACAGTTGC 59.993 44.000 0.00 0.00 0.00 4.17
2959 3297 5.523916 CCATGTCTAATGTACTACAGTTGCC 59.476 44.000 0.00 0.00 0.00 4.52
2960 3298 5.731957 TGTCTAATGTACTACAGTTGCCA 57.268 39.130 0.00 0.00 0.00 4.92
2961 3299 6.294361 TGTCTAATGTACTACAGTTGCCAT 57.706 37.500 0.00 0.00 0.00 4.40
2962 3300 6.106003 TGTCTAATGTACTACAGTTGCCATG 58.894 40.000 0.00 0.00 0.00 3.66
2963 3301 6.106673 GTCTAATGTACTACAGTTGCCATGT 58.893 40.000 0.00 0.00 34.62 3.21
2964 3302 6.255887 GTCTAATGTACTACAGTTGCCATGTC 59.744 42.308 0.00 0.00 32.02 3.06
2965 3303 4.826274 ATGTACTACAGTTGCCATGTCT 57.174 40.909 0.00 0.00 32.02 3.41
2966 3304 5.932619 ATGTACTACAGTTGCCATGTCTA 57.067 39.130 0.00 0.00 32.02 2.59
2967 3305 5.731957 TGTACTACAGTTGCCATGTCTAA 57.268 39.130 0.00 0.00 32.02 2.10
2968 3306 6.294361 TGTACTACAGTTGCCATGTCTAAT 57.706 37.500 0.00 0.00 32.02 1.73
2969 3307 6.106003 TGTACTACAGTTGCCATGTCTAATG 58.894 40.000 0.00 0.00 32.02 1.90
2970 3308 5.165961 ACTACAGTTGCCATGTCTAATGT 57.834 39.130 0.00 0.00 32.02 2.71
2971 3309 6.294361 ACTACAGTTGCCATGTCTAATGTA 57.706 37.500 0.00 0.00 32.02 2.29
2972 3310 6.106673 ACTACAGTTGCCATGTCTAATGTAC 58.893 40.000 0.00 0.00 32.02 2.90
2973 3311 5.165961 ACAGTTGCCATGTCTAATGTACT 57.834 39.130 0.00 0.00 0.00 2.73
2974 3312 6.294361 ACAGTTGCCATGTCTAATGTACTA 57.706 37.500 0.00 0.00 0.00 1.82
2975 3313 6.106673 ACAGTTGCCATGTCTAATGTACTAC 58.893 40.000 0.00 0.00 0.00 2.73
3000 3338 3.619419 TGCCATGTGTTATGTGCTACAT 58.381 40.909 6.93 6.93 42.35 2.29
3065 3440 7.671495 AAAACAAACAAAACTTGCAGATTCT 57.329 28.000 0.00 0.00 0.00 2.40
3086 3461 5.175859 TCTAGGAAGAAATAAAGTGTGCCG 58.824 41.667 0.00 0.00 0.00 5.69
3211 3586 0.098905 TCGTGAAAGCCTCGATCGAG 59.901 55.000 33.32 33.32 41.63 4.04
3529 3904 3.882888 CAGAAAAACACAGGAAGGCACTA 59.117 43.478 0.00 0.00 38.49 2.74
4004 4382 6.767902 AGTTAATCTGCCATGTTATGTGTAGG 59.232 38.462 0.00 0.00 0.00 3.18
4183 4607 7.109501 TGTTTGTACTGTATCTGCCATGTTAT 58.890 34.615 0.00 0.00 0.00 1.89
4222 4646 6.894682 TGCCATGGTATTTGTAATGACTCTA 58.105 36.000 14.67 0.00 0.00 2.43
4255 4679 1.704070 TCAATGACAAATCGACGCGA 58.296 45.000 15.93 4.51 41.13 5.87
4406 4831 6.074142 GCGATGAAAAAGAAGAAGCAAAACAT 60.074 34.615 0.00 0.00 0.00 2.71
4502 4929 2.483583 AAACGCATTCGAAACAGCAA 57.516 40.000 17.09 0.00 39.41 3.91
4672 5102 3.250040 CGGGGTTGCAGTATTAACATAGC 59.750 47.826 0.00 0.00 0.00 2.97
4673 5103 4.204012 GGGGTTGCAGTATTAACATAGCA 58.796 43.478 0.00 0.00 0.00 3.49
4678 5108 6.348950 GGTTGCAGTATTAACATAGCACACAA 60.349 38.462 0.00 0.00 32.35 3.33
4680 5110 6.607689 TGCAGTATTAACATAGCACACAAAC 58.392 36.000 0.00 0.00 0.00 2.93
4707 5138 5.485662 AGTTTTCGACAAGAACAAAGAGG 57.514 39.130 0.00 0.00 38.83 3.69
4780 5211 1.067142 ACGCCACGTGATCACTTGTAT 60.067 47.619 25.46 11.53 39.18 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 58 2.438868 ATTCCTTTTTCTTGGCACGC 57.561 45.000 0.00 0.00 0.00 5.34
70 73 0.169009 GCCGTCACTGCTTCAATTCC 59.831 55.000 0.00 0.00 0.00 3.01
86 89 1.660264 GCTTGGTTTTTGTCCGCCG 60.660 57.895 0.00 0.00 0.00 6.46
89 92 4.085312 CGTTTTATGCTTGGTTTTTGTCCG 60.085 41.667 0.00 0.00 0.00 4.79
176 179 8.896744 CAATAAACCATCAGTGATGTAGACATT 58.103 33.333 27.27 17.31 38.28 2.71
183 187 6.534475 AATGCAATAAACCATCAGTGATGT 57.466 33.333 27.27 14.51 38.28 3.06
201 205 7.175467 ATGATTAATCTCATTAGGCGAAATGCA 59.825 33.333 16.24 0.00 37.74 3.96
226 230 9.613428 TCTAGCAACAAAACTACTGCATTATAT 57.387 29.630 0.00 0.00 37.26 0.86
372 378 6.344500 TCAACAAACATGGCAACTATTGTTT 58.656 32.000 16.31 13.36 41.87 2.83
557 581 8.051901 AGTTGTAGGCCATGTAATAGAAAAAC 57.948 34.615 5.01 0.00 0.00 2.43
571 595 4.323417 CTGTTCATTGTAGTTGTAGGCCA 58.677 43.478 5.01 0.00 0.00 5.36
738 762 2.483876 TGAGTGTTGCTAGTGCTTGTC 58.516 47.619 0.00 0.00 40.48 3.18
829 853 0.904649 ACGATCTCTGATTGCCCACA 59.095 50.000 0.00 0.00 0.00 4.17
992 1017 1.915489 TGTGGCACCTCATATCACCTT 59.085 47.619 16.26 0.00 0.00 3.50
1083 1108 1.611673 CGGACAGGGCATTCAGTCTTT 60.612 52.381 0.00 0.00 0.00 2.52
1167 1192 6.872020 CCAGGTCGAACTTCTTTATGAGTTTA 59.128 38.462 0.00 0.00 0.00 2.01
1226 1251 4.092383 GCTTTACGAATTGCCTTTCTACGA 59.908 41.667 0.00 0.00 0.00 3.43
1853 1878 0.534203 TGGACGGTCAGCAAAGAACC 60.534 55.000 10.76 0.00 0.00 3.62
2208 2235 0.460284 ACGTTAGCAATCTCGGCTGG 60.460 55.000 0.00 0.00 42.62 4.85
2244 2271 8.334263 TGTTTGTGTATATCTTGCTCATTTGA 57.666 30.769 0.00 0.00 0.00 2.69
2391 2424 7.359595 TGCAGTTGAGTAATCATGTTAAACAC 58.640 34.615 0.00 0.00 0.00 3.32
2522 2557 6.313905 CCTAGTGGAAGTACAGTGCATTAAAG 59.686 42.308 0.00 0.00 34.57 1.85
2692 2767 4.621274 GCCACTGCATTCATTAAACATGGT 60.621 41.667 0.00 0.00 37.47 3.55
2713 2793 2.609350 CACAATGCTTACAACATGGCC 58.391 47.619 0.00 0.00 0.00 5.36
2860 3130 8.574251 AATGTAGTACATTTAGACATGGCAAA 57.426 30.769 20.55 0.00 45.80 3.68
2874 3144 8.623903 CATTTAGACATGGCAAATGTAGTACAT 58.376 33.333 19.88 10.10 41.31 2.29
2955 3293 6.294361 ACTGTAGTACATTAGACATGGCAA 57.706 37.500 0.00 0.00 0.00 4.52
2956 3294 5.932619 ACTGTAGTACATTAGACATGGCA 57.067 39.130 0.00 0.00 0.00 4.92
2957 3295 5.006746 GCAACTGTAGTACATTAGACATGGC 59.993 44.000 2.82 0.00 0.00 4.40
2958 3296 5.523916 GGCAACTGTAGTACATTAGACATGG 59.476 44.000 2.82 0.00 0.00 3.66
2959 3297 6.106003 TGGCAACTGTAGTACATTAGACATG 58.894 40.000 2.82 0.00 37.61 3.21
2960 3298 6.294361 TGGCAACTGTAGTACATTAGACAT 57.706 37.500 2.82 0.00 37.61 3.06
2961 3299 5.731957 TGGCAACTGTAGTACATTAGACA 57.268 39.130 2.82 2.11 37.61 3.41
2962 3300 6.036083 CACATGGCAACTGTAGTACATTAGAC 59.964 42.308 2.82 0.00 37.61 2.59
2963 3301 6.106003 CACATGGCAACTGTAGTACATTAGA 58.894 40.000 2.82 0.00 37.61 2.10
2964 3302 5.874810 ACACATGGCAACTGTAGTACATTAG 59.125 40.000 2.82 0.00 37.61 1.73
2965 3303 5.800296 ACACATGGCAACTGTAGTACATTA 58.200 37.500 2.82 0.00 37.61 1.90
2966 3304 4.651778 ACACATGGCAACTGTAGTACATT 58.348 39.130 2.82 0.00 37.61 2.71
2967 3305 4.286297 ACACATGGCAACTGTAGTACAT 57.714 40.909 2.82 0.00 37.61 2.29
2968 3306 3.762407 ACACATGGCAACTGTAGTACA 57.238 42.857 2.36 2.36 37.61 2.90
2969 3307 5.642063 ACATAACACATGGCAACTGTAGTAC 59.358 40.000 0.00 0.00 37.61 2.73
2970 3308 5.641636 CACATAACACATGGCAACTGTAGTA 59.358 40.000 0.00 0.00 37.61 1.82
2971 3309 4.455533 CACATAACACATGGCAACTGTAGT 59.544 41.667 0.00 0.00 37.61 2.73
2972 3310 4.672542 GCACATAACACATGGCAACTGTAG 60.673 45.833 0.00 0.00 37.61 2.74
2973 3311 3.190327 GCACATAACACATGGCAACTGTA 59.810 43.478 0.00 0.00 37.61 2.74
2974 3312 2.030007 GCACATAACACATGGCAACTGT 60.030 45.455 0.00 0.00 37.61 3.55
2975 3313 2.229543 AGCACATAACACATGGCAACTG 59.770 45.455 0.00 0.00 37.61 3.16
3000 3338 6.234920 ACTGTAGTACATAACACATGGCAAA 58.765 36.000 2.82 0.00 0.00 3.68
3065 3440 4.258543 CCGGCACACTTTATTTCTTCCTA 58.741 43.478 0.00 0.00 0.00 2.94
3086 3461 1.212751 GGAAAGCCGTGAACATGCC 59.787 57.895 0.00 0.00 0.00 4.40
3211 3586 0.938008 GGCAGTAGTATTCGCCTTGC 59.062 55.000 0.00 0.00 41.50 4.01
4004 4382 9.706691 TTAGTATAAAATAGCATGGCAGACTAC 57.293 33.333 0.00 0.00 0.00 2.73
4060 4438 4.442052 GCAGATCCAGTACAACTAGCATGA 60.442 45.833 0.00 0.00 0.00 3.07
4183 4607 6.849085 ACCATGGCATATTTTCAGTACAAA 57.151 33.333 13.04 0.00 0.00 2.83
4222 4646 9.701098 GATTTGTCATTGAAATATATGCCATGT 57.299 29.630 0.00 0.00 0.00 3.21
4282 4706 6.739331 TTCCAACTTGTTTCCCATACATTT 57.261 33.333 0.00 0.00 0.00 2.32
4406 4831 5.008217 AGTCATCGTCGTTTTTCATTTTGGA 59.992 36.000 0.00 0.00 0.00 3.53
4502 4929 2.073816 CATCGTTTCTAGCACCGGTTT 58.926 47.619 2.97 0.00 0.00 3.27
4559 4987 4.076394 TGAACCTTTTTAGGCGCTACAAT 58.924 39.130 7.64 0.00 0.00 2.71
4617 5046 0.602905 GTAGTGGTGGTGTGTGAGCC 60.603 60.000 0.00 0.00 0.00 4.70
4678 5108 6.671614 TGTTCTTGTCGAAAACTATGTGTT 57.328 33.333 0.00 0.00 41.29 3.32
4680 5110 7.406553 TCTTTGTTCTTGTCGAAAACTATGTG 58.593 34.615 0.00 0.00 32.41 3.21
4707 5138 3.382546 TGCCGAGGAATGTAAGGTACTAC 59.617 47.826 0.00 0.00 38.49 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.