Multiple sequence alignment - TraesCS2B01G044600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G044600 chr2B 100.000 5993 0 0 1 5993 21849517 21855509 0.000000e+00 11068.0
1 TraesCS2B01G044600 chr2B 94.552 2533 106 13 958 3476 19843466 19845980 0.000000e+00 3884.0
2 TraesCS2B01G044600 chr2B 93.415 1306 68 10 3578 4882 19846079 19847367 0.000000e+00 1919.0
3 TraesCS2B01G044600 chr2B 88.915 848 66 14 874 1706 21531879 21531045 0.000000e+00 1020.0
4 TraesCS2B01G044600 chr2B 84.661 678 57 27 1763 2426 21531033 21530389 3.050000e-177 632.0
5 TraesCS2B01G044600 chr2B 76.677 999 200 27 3578 4558 23015322 23016305 1.910000e-144 523.0
6 TraesCS2B01G044600 chr2B 82.836 536 55 16 5314 5819 19847759 19848287 4.260000e-121 446.0
7 TraesCS2B01G044600 chr2B 92.000 150 5 4 4962 5111 19847384 19847526 2.830000e-48 204.0
8 TraesCS2B01G044600 chr2B 92.708 96 7 0 1 96 11377756 11377661 8.100000e-29 139.0
9 TraesCS2B01G044600 chr2A 91.183 1826 97 30 3472 5292 13914765 13912999 0.000000e+00 2422.0
10 TraesCS2B01G044600 chr2A 91.441 1659 80 24 3487 5141 14288621 14290221 0.000000e+00 2220.0
11 TraesCS2B01G044600 chr2A 87.567 1673 138 29 969 2598 13917169 13915524 0.000000e+00 1873.0
12 TraesCS2B01G044600 chr2A 91.774 620 38 6 970 1579 14285818 14286434 0.000000e+00 850.0
13 TraesCS2B01G044600 chr2A 88.017 701 55 16 5310 5993 13880854 13880166 0.000000e+00 802.0
14 TraesCS2B01G044600 chr2A 88.155 439 43 8 5385 5818 13912961 13912527 1.150000e-141 514.0
15 TraesCS2B01G044600 chr2A 92.982 285 19 1 2755 3039 14287248 14287531 1.200000e-111 414.0
16 TraesCS2B01G044600 chr2A 92.281 285 20 2 2755 3039 13915526 13915244 2.600000e-108 403.0
17 TraesCS2B01G044600 chr2A 94.024 251 13 2 2344 2594 14286998 14287246 4.380000e-101 379.0
18 TraesCS2B01G044600 chr2A 90.071 282 27 1 587 867 13917612 13917331 1.230000e-96 364.0
19 TraesCS2B01G044600 chr2A 81.681 464 43 21 5385 5818 14290415 14290866 1.240000e-91 348.0
20 TraesCS2B01G044600 chr2A 89.575 259 12 4 1611 1869 14286439 14286682 1.250000e-81 315.0
21 TraesCS2B01G044600 chr2A 91.534 189 11 1 1868 2056 14286765 14286948 7.710000e-64 255.0
22 TraesCS2B01G044600 chr2A 85.115 262 13 15 157 413 13919935 13919695 1.670000e-60 244.0
23 TraesCS2B01G044600 chr2A 88.462 208 17 3 3100 3300 14288140 14288347 1.670000e-60 244.0
24 TraesCS2B01G044600 chr2A 93.865 163 9 1 2596 2757 569586940 569586778 1.670000e-60 244.0
25 TraesCS2B01G044600 chr2A 95.614 114 5 0 5183 5296 13880949 13880836 3.690000e-42 183.0
26 TraesCS2B01G044600 chr2A 85.484 186 12 3 3291 3476 14288367 14288537 4.770000e-41 180.0
27 TraesCS2B01G044600 chr2A 84.106 151 16 6 5665 5810 13911521 13911374 8.100000e-29 139.0
28 TraesCS2B01G044600 chr2A 92.045 88 7 0 5906 5993 584516390 584516477 2.270000e-24 124.0
29 TraesCS2B01G044600 chr2A 85.246 122 17 1 32 153 700986136 700986016 2.270000e-24 124.0
30 TraesCS2B01G044600 chr2A 91.304 69 6 0 435 503 13919147 13919079 1.780000e-15 95.3
31 TraesCS2B01G044600 chr2A 89.655 58 5 1 444 500 14284299 14284356 8.330000e-09 73.1
32 TraesCS2B01G044600 chrUn 93.827 162 9 1 2596 2756 31220496 31220657 6.000000e-60 243.0
33 TraesCS2B01G044600 chrUn 94.737 57 2 1 500 555 55723651 55723707 2.980000e-13 87.9
34 TraesCS2B01G044600 chr5D 93.293 164 10 1 2595 2757 46310892 46311055 2.160000e-59 241.0
35 TraesCS2B01G044600 chr5D 88.636 88 10 0 5906 5993 557500376 557500289 2.280000e-19 108.0
36 TraesCS2B01G044600 chr5D 91.935 62 5 0 92 153 530428366 530428427 2.980000e-13 87.9
37 TraesCS2B01G044600 chr5D 87.671 73 8 1 92 164 415615078 415615007 3.850000e-12 84.2
38 TraesCS2B01G044600 chr5D 85.366 82 10 2 92 172 476942285 476942365 3.850000e-12 84.2
39 TraesCS2B01G044600 chr5D 84.524 84 9 2 92 171 328911593 328911676 4.980000e-11 80.5
40 TraesCS2B01G044600 chr2D 93.293 164 10 1 2594 2756 305515032 305514869 2.160000e-59 241.0
41 TraesCS2B01G044600 chr2D 93.252 163 10 1 2596 2757 420523676 420523838 7.760000e-59 239.0
42 TraesCS2B01G044600 chr2D 89.231 65 5 2 5907 5969 126967203 126967139 4.980000e-11 80.5
43 TraesCS2B01G044600 chr3D 90.556 180 15 2 2594 2772 410670226 410670048 2.790000e-58 237.0
44 TraesCS2B01G044600 chr3D 88.764 89 10 0 5905 5993 93114017 93113929 6.350000e-20 110.0
45 TraesCS2B01G044600 chr3A 90.556 180 15 2 2579 2757 724492214 724492392 2.790000e-58 237.0
46 TraesCS2B01G044600 chr3A 92.784 97 7 0 1 97 333306321 333306417 2.250000e-29 141.0
47 TraesCS2B01G044600 chr7B 89.617 183 14 5 2575 2756 561750596 561750774 1.680000e-55 228.0
48 TraesCS2B01G044600 chr7B 93.878 98 6 0 1 98 691963863 691963960 1.350000e-31 148.0
49 TraesCS2B01G044600 chr7B 100.000 48 0 0 503 550 636821270 636821223 8.270000e-14 89.8
50 TraesCS2B01G044600 chr5B 94.845 97 5 0 1 97 678119726 678119822 1.040000e-32 152.0
51 TraesCS2B01G044600 chr5B 90.385 104 10 0 1 104 410528982 410528879 2.910000e-28 137.0
52 TraesCS2B01G044600 chr5B 88.889 90 10 0 5904 5993 494020436 494020525 1.770000e-20 111.0
53 TraesCS2B01G044600 chr5B 90.476 84 8 0 5906 5989 711099487 711099404 1.770000e-20 111.0
54 TraesCS2B01G044600 chr5B 92.063 63 5 0 92 154 588523914 588523852 8.270000e-14 89.8
55 TraesCS2B01G044600 chr4B 94.737 95 5 0 1 95 83135589 83135495 1.350000e-31 148.0
56 TraesCS2B01G044600 chr1B 93.684 95 6 0 1 95 259515230 259515324 6.260000e-30 143.0
57 TraesCS2B01G044600 chr1B 100.000 52 0 0 499 550 483293982 483294033 4.940000e-16 97.1
58 TraesCS2B01G044600 chr3B 92.708 96 7 0 1 96 821020703 821020798 8.100000e-29 139.0
59 TraesCS2B01G044600 chr7D 95.385 65 3 0 5929 5993 401720508 401720444 2.950000e-18 104.0
60 TraesCS2B01G044600 chr7D 96.296 54 2 0 496 549 591214084 591214137 8.270000e-14 89.8
61 TraesCS2B01G044600 chr7D 91.935 62 5 0 92 153 407855941 407855880 2.980000e-13 87.9
62 TraesCS2B01G044600 chr1A 93.443 61 4 0 500 560 95061163 95061223 2.300000e-14 91.6
63 TraesCS2B01G044600 chr1A 93.220 59 2 2 505 561 395484968 395484910 1.070000e-12 86.1
64 TraesCS2B01G044600 chr7A 94.828 58 2 1 500 556 422475107 422475164 8.270000e-14 89.8
65 TraesCS2B01G044600 chr6B 98.039 51 1 0 500 550 55994043 55994093 8.270000e-14 89.8
66 TraesCS2B01G044600 chr5A 90.769 65 6 0 89 153 421833705 421833769 2.980000e-13 87.9
67 TraesCS2B01G044600 chr1D 88.571 70 6 2 92 160 74395137 74395205 3.850000e-12 84.2
68 TraesCS2B01G044600 chr1D 93.103 58 2 2 505 562 476397706 476397761 3.850000e-12 84.2
69 TraesCS2B01G044600 chr6D 97.619 42 1 0 5935 5976 49853306 49853265 8.330000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G044600 chr2B 21849517 21855509 5992 False 11068.0000 11068 100.00000 1 5993 1 chr2B.!!$F1 5992
1 TraesCS2B01G044600 chr2B 19843466 19848287 4821 False 1613.2500 3884 90.70075 958 5819 4 chr2B.!!$F3 4861
2 TraesCS2B01G044600 chr2B 21530389 21531879 1490 True 826.0000 1020 86.78800 874 2426 2 chr2B.!!$R2 1552
3 TraesCS2B01G044600 chr2B 23015322 23016305 983 False 523.0000 523 76.67700 3578 4558 1 chr2B.!!$F2 980
4 TraesCS2B01G044600 chr2A 13911374 13919935 8561 True 756.7875 2422 88.72275 157 5818 8 chr2A.!!$R4 5661
5 TraesCS2B01G044600 chr2A 14284299 14290866 6567 False 527.8100 2220 89.66120 444 5818 10 chr2A.!!$F2 5374
6 TraesCS2B01G044600 chr2A 13880166 13880949 783 True 492.5000 802 91.81550 5183 5993 2 chr2A.!!$R3 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 310 0.029567 GACGAGTGGCCACGAGATAG 59.970 60.000 30.99 21.19 36.20 2.08 F
421 430 0.032678 ACACGAGCGATCATCATCCC 59.967 55.000 0.00 0.00 0.00 3.85 F
503 1039 0.107831 TTGCTGCCTGGTCGTTAGTT 59.892 50.000 0.00 0.00 0.00 2.24 F
923 3115 0.690762 TAAGAGCACCCACCCACTTC 59.309 55.000 0.00 0.00 0.00 3.01 F
2438 4812 0.179018 GATGTACCCATGCCCCTGTC 60.179 60.000 0.00 0.00 0.00 3.51 F
3061 5625 0.322366 TCCATGTTTCATGCTCGGCA 60.322 50.000 1.01 1.01 44.86 5.69 F
3755 7021 0.911769 ATGGCGAGAACTGAATGGGA 59.088 50.000 0.00 0.00 0.00 4.37 F
3908 7174 1.336424 TGCTGACTATCGTTGACGCAA 60.336 47.619 0.00 0.00 39.60 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1400 3621 0.250166 GGTAGCGGATTTGCGGGTAT 60.250 55.000 0.00 0.00 40.67 2.73 R
2345 4700 0.320374 CAGAAGGGTTGCTGGTACGA 59.680 55.000 0.00 0.00 0.00 3.43 R
2426 4800 2.355108 CCGATAATAGACAGGGGCATGG 60.355 54.545 0.00 0.00 0.00 3.66 R
2801 5335 2.312741 TGATTCCCTTGGAGGCAAGAAT 59.687 45.455 0.00 0.00 32.73 2.40 R
4174 7443 0.531532 CCAGCTTCGATACCCAGCAG 60.532 60.000 8.64 0.55 35.88 4.24 R
4756 8028 0.178935 AACACCCATCCAACCCAAGG 60.179 55.000 0.00 0.00 0.00 3.61 R
4842 8115 0.318441 TGGTGTACACTCAGCAGAGC 59.682 55.000 24.55 6.10 46.09 4.09 R
5151 8447 0.391793 GAGGCCACAGTAGAAGGTGC 60.392 60.000 5.01 0.00 33.72 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 9.158233 TCTACAAAGATTTACATTTAGGAACGG 57.842 33.333 0.00 0.00 0.00 4.44
87 88 7.989416 ACAAAGATTTACATTTAGGAACGGA 57.011 32.000 0.00 0.00 0.00 4.69
88 89 8.398878 ACAAAGATTTACATTTAGGAACGGAA 57.601 30.769 0.00 0.00 0.00 4.30
89 90 8.512138 ACAAAGATTTACATTTAGGAACGGAAG 58.488 33.333 0.00 0.00 0.00 3.46
90 91 7.625828 AAGATTTACATTTAGGAACGGAAGG 57.374 36.000 0.00 0.00 0.00 3.46
91 92 6.954232 AGATTTACATTTAGGAACGGAAGGA 58.046 36.000 0.00 0.00 0.00 3.36
92 93 7.048512 AGATTTACATTTAGGAACGGAAGGAG 58.951 38.462 0.00 0.00 0.00 3.69
93 94 5.750352 TTACATTTAGGAACGGAAGGAGT 57.250 39.130 0.00 0.00 0.00 3.85
94 95 6.855763 TTACATTTAGGAACGGAAGGAGTA 57.144 37.500 0.00 0.00 0.00 2.59
95 96 5.952347 ACATTTAGGAACGGAAGGAGTAT 57.048 39.130 0.00 0.00 0.00 2.12
96 97 8.537728 TTACATTTAGGAACGGAAGGAGTATA 57.462 34.615 0.00 0.00 0.00 1.47
97 98 7.427989 ACATTTAGGAACGGAAGGAGTATAA 57.572 36.000 0.00 0.00 0.00 0.98
98 99 7.270779 ACATTTAGGAACGGAAGGAGTATAAC 58.729 38.462 0.00 0.00 0.00 1.89
99 100 7.125356 ACATTTAGGAACGGAAGGAGTATAACT 59.875 37.037 0.00 0.00 0.00 2.24
100 101 7.486407 TTTAGGAACGGAAGGAGTATAACTT 57.514 36.000 0.00 0.00 0.00 2.66
101 102 7.486407 TTAGGAACGGAAGGAGTATAACTTT 57.514 36.000 0.00 0.00 0.00 2.66
102 103 8.593945 TTAGGAACGGAAGGAGTATAACTTTA 57.406 34.615 0.00 0.00 0.00 1.85
103 104 7.672122 AGGAACGGAAGGAGTATAACTTTAT 57.328 36.000 0.00 0.00 0.00 1.40
104 105 8.773033 AGGAACGGAAGGAGTATAACTTTATA 57.227 34.615 0.00 0.00 0.00 0.98
105 106 8.637099 AGGAACGGAAGGAGTATAACTTTATAC 58.363 37.037 10.10 10.10 43.60 1.47
129 130 8.958119 ACTGAAATTAGTACAAAGTTGAGACA 57.042 30.769 0.00 0.00 0.00 3.41
130 131 8.827677 ACTGAAATTAGTACAAAGTTGAGACAC 58.172 33.333 0.00 0.00 0.00 3.67
131 132 8.958119 TGAAATTAGTACAAAGTTGAGACACT 57.042 30.769 0.00 0.00 0.00 3.55
132 133 9.391006 TGAAATTAGTACAAAGTTGAGACACTT 57.609 29.630 0.00 0.00 38.74 3.16
139 140 9.391006 AGTACAAAGTTGAGACACTTATTTTGA 57.609 29.630 0.00 0.00 35.87 2.69
140 141 9.997482 GTACAAAGTTGAGACACTTATTTTGAA 57.003 29.630 0.00 0.00 35.87 2.69
142 143 9.353999 ACAAAGTTGAGACACTTATTTTGAAAC 57.646 29.630 0.00 0.00 35.87 2.78
143 144 8.523464 CAAAGTTGAGACACTTATTTTGAAACG 58.477 33.333 0.00 0.00 35.87 3.60
144 145 6.725246 AGTTGAGACACTTATTTTGAAACGG 58.275 36.000 0.00 0.00 0.00 4.44
145 146 6.540914 AGTTGAGACACTTATTTTGAAACGGA 59.459 34.615 0.00 0.00 0.00 4.69
146 147 6.539649 TGAGACACTTATTTTGAAACGGAG 57.460 37.500 0.00 0.00 0.00 4.63
147 148 5.049680 TGAGACACTTATTTTGAAACGGAGC 60.050 40.000 0.00 0.00 0.00 4.70
148 149 4.084013 AGACACTTATTTTGAAACGGAGCG 60.084 41.667 0.00 0.00 0.00 5.03
149 150 3.810941 ACACTTATTTTGAAACGGAGCGA 59.189 39.130 0.00 0.00 0.00 4.93
150 151 4.084013 ACACTTATTTTGAAACGGAGCGAG 60.084 41.667 0.00 0.00 0.00 5.03
151 152 4.062991 ACTTATTTTGAAACGGAGCGAGT 58.937 39.130 0.00 0.00 0.00 4.18
152 153 5.119588 CACTTATTTTGAAACGGAGCGAGTA 59.880 40.000 0.00 0.00 0.00 2.59
153 154 5.697633 ACTTATTTTGAAACGGAGCGAGTAA 59.302 36.000 0.00 0.00 0.00 2.24
154 155 6.370718 ACTTATTTTGAAACGGAGCGAGTAAT 59.629 34.615 0.00 0.00 0.00 1.89
155 156 7.546667 ACTTATTTTGAAACGGAGCGAGTAATA 59.453 33.333 0.00 0.00 0.00 0.98
167 168 2.415168 GCGAGTAATAGCAGCACAAACA 59.585 45.455 0.00 0.00 0.00 2.83
172 173 5.772521 AGTAATAGCAGCACAAACAAAAGG 58.227 37.500 0.00 0.00 0.00 3.11
183 184 0.179089 AACAAAAGGCACATGCGCAA 60.179 45.000 17.11 0.00 43.26 4.85
199 204 1.466167 CGCAAACCATCAGAGGTCTTG 59.534 52.381 0.00 0.00 42.25 3.02
207 212 1.153939 CAGAGGTCTTGGCGTCTCG 60.154 63.158 0.00 0.00 32.07 4.04
240 249 1.740718 CGGAAGCTTTGCTACTCCCTC 60.741 57.143 0.00 0.00 38.25 4.30
249 258 0.319986 GCTACTCCCTCGCCTATTGC 60.320 60.000 0.00 0.00 0.00 3.56
252 261 0.179000 ACTCCCTCGCCTATTGCTTG 59.821 55.000 0.00 0.00 38.05 4.01
253 262 1.153168 TCCCTCGCCTATTGCTTGC 60.153 57.895 0.00 0.00 38.05 4.01
254 263 1.153086 CCCTCGCCTATTGCTTGCT 60.153 57.895 0.00 0.00 38.05 3.91
255 264 1.162800 CCCTCGCCTATTGCTTGCTC 61.163 60.000 0.00 0.00 38.05 4.26
256 265 0.462581 CCTCGCCTATTGCTTGCTCA 60.463 55.000 0.00 0.00 38.05 4.26
257 266 0.935898 CTCGCCTATTGCTTGCTCAG 59.064 55.000 0.00 0.00 38.05 3.35
258 267 0.250234 TCGCCTATTGCTTGCTCAGT 59.750 50.000 0.00 0.00 38.05 3.41
259 268 1.089920 CGCCTATTGCTTGCTCAGTT 58.910 50.000 0.00 0.00 38.05 3.16
260 269 1.470098 CGCCTATTGCTTGCTCAGTTT 59.530 47.619 0.00 0.00 38.05 2.66
261 270 2.677836 CGCCTATTGCTTGCTCAGTTTA 59.322 45.455 0.00 0.00 38.05 2.01
262 271 3.313526 CGCCTATTGCTTGCTCAGTTTAT 59.686 43.478 0.00 0.00 38.05 1.40
263 272 4.604976 GCCTATTGCTTGCTCAGTTTATG 58.395 43.478 0.00 0.00 36.87 1.90
264 273 4.498682 GCCTATTGCTTGCTCAGTTTATGG 60.499 45.833 0.00 0.00 36.87 2.74
265 274 4.883585 CCTATTGCTTGCTCAGTTTATGGA 59.116 41.667 0.00 0.00 0.00 3.41
266 275 4.978083 ATTGCTTGCTCAGTTTATGGAG 57.022 40.909 0.00 0.00 0.00 3.86
271 280 1.291132 GCTCAGTTTATGGAGCGACC 58.709 55.000 0.00 0.00 46.01 4.79
272 281 1.134670 GCTCAGTTTATGGAGCGACCT 60.135 52.381 0.00 0.00 46.01 3.85
273 282 2.544685 CTCAGTTTATGGAGCGACCTG 58.455 52.381 4.77 0.00 39.86 4.00
274 283 1.207089 TCAGTTTATGGAGCGACCTGG 59.793 52.381 0.00 0.00 39.86 4.45
275 284 0.107654 AGTTTATGGAGCGACCTGGC 60.108 55.000 0.00 0.00 39.86 4.85
301 310 0.029567 GACGAGTGGCCACGAGATAG 59.970 60.000 30.99 21.19 36.20 2.08
311 320 1.069358 CCACGAGATAGGCCTCTTTCC 59.931 57.143 9.68 0.00 0.00 3.13
413 422 1.482278 GGATTCAGACACGAGCGATC 58.518 55.000 0.00 0.00 0.00 3.69
414 423 1.202302 GGATTCAGACACGAGCGATCA 60.202 52.381 0.00 0.00 0.00 2.92
415 424 2.544694 GGATTCAGACACGAGCGATCAT 60.545 50.000 0.00 0.00 0.00 2.45
416 425 2.194800 TTCAGACACGAGCGATCATC 57.805 50.000 0.00 0.00 0.00 2.92
417 426 1.094785 TCAGACACGAGCGATCATCA 58.905 50.000 0.00 0.00 0.00 3.07
418 427 1.678101 TCAGACACGAGCGATCATCAT 59.322 47.619 0.00 0.00 0.00 2.45
419 428 2.049959 CAGACACGAGCGATCATCATC 58.950 52.381 0.00 0.00 0.00 2.92
420 429 1.000827 AGACACGAGCGATCATCATCC 60.001 52.381 0.00 0.00 0.00 3.51
421 430 0.032678 ACACGAGCGATCATCATCCC 59.967 55.000 0.00 0.00 0.00 3.85
423 432 1.445066 CGAGCGATCATCATCCCCG 60.445 63.158 0.00 0.00 0.00 5.73
426 435 1.597854 GCGATCATCATCCCCGCAA 60.598 57.895 0.00 0.00 44.55 4.85
428 437 0.532640 CGATCATCATCCCCGCAACA 60.533 55.000 0.00 0.00 0.00 3.33
431 966 2.549064 TCATCATCCCCGCAACATAG 57.451 50.000 0.00 0.00 0.00 2.23
450 985 6.496571 ACATAGCGCGAAAGATATATCCTAC 58.503 40.000 12.10 0.63 0.00 3.18
458 993 7.323895 CGCGAAAGATATATCCTACATTATCCG 59.676 40.741 0.00 3.82 0.00 4.18
462 997 8.768501 AAGATATATCCTACATTATCCGCTCA 57.231 34.615 9.18 0.00 0.00 4.26
467 1003 2.611473 CCTACATTATCCGCTCAGCCAG 60.611 54.545 0.00 0.00 0.00 4.85
469 1005 1.202580 ACATTATCCGCTCAGCCAGTC 60.203 52.381 0.00 0.00 0.00 3.51
500 1036 0.613260 ATCTTGCTGCCTGGTCGTTA 59.387 50.000 0.00 0.00 0.00 3.18
503 1039 0.107831 TTGCTGCCTGGTCGTTAGTT 59.892 50.000 0.00 0.00 0.00 2.24
504 1040 0.107831 TGCTGCCTGGTCGTTAGTTT 59.892 50.000 0.00 0.00 0.00 2.66
505 1041 1.345089 TGCTGCCTGGTCGTTAGTTTA 59.655 47.619 0.00 0.00 0.00 2.01
507 1043 2.612221 GCTGCCTGGTCGTTAGTTTAGT 60.612 50.000 0.00 0.00 0.00 2.24
508 1044 2.993899 CTGCCTGGTCGTTAGTTTAGTG 59.006 50.000 0.00 0.00 0.00 2.74
509 1045 2.629137 TGCCTGGTCGTTAGTTTAGTGA 59.371 45.455 0.00 0.00 0.00 3.41
510 1046 3.259876 TGCCTGGTCGTTAGTTTAGTGAT 59.740 43.478 0.00 0.00 0.00 3.06
512 1048 4.381718 GCCTGGTCGTTAGTTTAGTGATCT 60.382 45.833 0.00 0.00 0.00 2.75
514 1050 6.626623 GCCTGGTCGTTAGTTTAGTGATCTAA 60.627 42.308 0.00 0.00 34.76 2.10
515 1051 7.318141 CCTGGTCGTTAGTTTAGTGATCTAAA 58.682 38.462 0.00 0.00 41.87 1.85
536 2513 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
582 2678 3.371702 CCTCTCTGCCAGTACCACTAGTA 60.372 52.174 0.00 0.00 0.00 1.82
639 2754 7.619982 GCAAAAATCTTGCGATGAGGTAAAAAG 60.620 37.037 0.00 0.00 35.58 2.27
641 2756 6.575162 AATCTTGCGATGAGGTAAAAAGTT 57.425 33.333 0.00 0.00 0.00 2.66
690 2805 1.960689 ACGTTTTTGCTGTAATGCCCT 59.039 42.857 0.00 0.00 0.00 5.19
708 2823 3.636764 GCCCTACATTTGATTACAAGGGG 59.363 47.826 6.64 0.00 37.14 4.79
755 2870 8.999220 ACTACTAGTAACAATTTGAAGTAGGC 57.001 34.615 19.25 0.00 39.34 3.93
760 2875 7.073342 AGTAACAATTTGAAGTAGGCGATTC 57.927 36.000 2.79 0.00 0.00 2.52
769 2884 3.627395 AGTAGGCGATTCAAATGACCA 57.373 42.857 0.00 0.00 0.00 4.02
801 2916 8.757982 ACATTCCATACTATTGAGAATTTGCT 57.242 30.769 0.00 0.00 0.00 3.91
814 2929 1.168714 ATTTGCTGAGGAGGCGTTTC 58.831 50.000 0.00 0.00 0.00 2.78
829 2965 4.638865 AGGCGTTTCTATACCAATCAAACC 59.361 41.667 0.00 0.00 0.00 3.27
833 2969 6.526674 GCGTTTCTATACCAATCAAACCTTTG 59.473 38.462 0.00 0.00 39.48 2.77
849 2985 2.225727 CCTTTGTAGACCTCGGTTTTGC 59.774 50.000 0.00 0.00 0.00 3.68
855 2991 3.987404 CCTCGGTTTTGCAGGAGG 58.013 61.111 5.74 5.74 40.05 4.30
864 3000 3.573967 GGTTTTGCAGGAGGAGATTTTCA 59.426 43.478 0.00 0.00 0.00 2.69
867 3003 5.649782 TTTGCAGGAGGAGATTTTCATTC 57.350 39.130 0.00 0.00 0.00 2.67
868 3004 4.305539 TGCAGGAGGAGATTTTCATTCA 57.694 40.909 0.00 0.00 0.00 2.57
869 3005 4.267536 TGCAGGAGGAGATTTTCATTCAG 58.732 43.478 0.00 0.00 0.00 3.02
870 3006 3.066481 GCAGGAGGAGATTTTCATTCAGC 59.934 47.826 0.00 0.00 0.00 4.26
872 3008 4.335874 CAGGAGGAGATTTTCATTCAGCTG 59.664 45.833 7.63 7.63 0.00 4.24
892 3084 1.319669 GTCGCTACCGTCGTCAAATTC 59.680 52.381 0.00 0.00 35.54 2.17
902 3094 3.712187 GTCGTCAAATTCCAGCCAAAAA 58.288 40.909 0.00 0.00 0.00 1.94
907 3099 6.644592 TCGTCAAATTCCAGCCAAAAATTAAG 59.355 34.615 0.00 0.00 0.00 1.85
908 3100 6.644592 CGTCAAATTCCAGCCAAAAATTAAGA 59.355 34.615 0.00 0.00 0.00 2.10
909 3101 7.148755 CGTCAAATTCCAGCCAAAAATTAAGAG 60.149 37.037 0.00 0.00 0.00 2.85
910 3102 6.650390 TCAAATTCCAGCCAAAAATTAAGAGC 59.350 34.615 0.00 0.00 0.00 4.09
911 3103 5.743636 ATTCCAGCCAAAAATTAAGAGCA 57.256 34.783 0.00 0.00 0.00 4.26
912 3104 4.519540 TCCAGCCAAAAATTAAGAGCAC 57.480 40.909 0.00 0.00 0.00 4.40
913 3105 3.258123 TCCAGCCAAAAATTAAGAGCACC 59.742 43.478 0.00 0.00 0.00 5.01
914 3106 3.588955 CAGCCAAAAATTAAGAGCACCC 58.411 45.455 0.00 0.00 0.00 4.61
921 3113 1.372501 ATTAAGAGCACCCACCCACT 58.627 50.000 0.00 0.00 0.00 4.00
922 3114 1.145571 TTAAGAGCACCCACCCACTT 58.854 50.000 0.00 0.00 0.00 3.16
923 3115 0.690762 TAAGAGCACCCACCCACTTC 59.309 55.000 0.00 0.00 0.00 3.01
925 3117 3.569200 GAGCACCCACCCACTTCCC 62.569 68.421 0.00 0.00 0.00 3.97
939 3131 2.093235 CACTTCCCCCTTTGCAAAAACA 60.093 45.455 13.84 0.00 0.00 2.83
947 3139 2.223317 CCTTTGCAAAAACAGCCAAAGC 60.223 45.455 13.84 0.00 40.32 3.51
948 3140 2.105006 TTGCAAAAACAGCCAAAGCA 57.895 40.000 0.00 0.00 43.56 3.91
949 3141 1.654317 TGCAAAAACAGCCAAAGCAG 58.346 45.000 0.00 0.00 43.56 4.24
952 3144 1.854126 CAAAAACAGCCAAAGCAGTCG 59.146 47.619 0.00 0.00 37.83 4.18
954 3146 1.383456 AAACAGCCAAAGCAGTCGCA 61.383 50.000 0.00 0.00 37.83 5.10
955 3147 1.383456 AACAGCCAAAGCAGTCGCAA 61.383 50.000 0.00 0.00 37.83 4.85
981 3187 4.426313 CCGCCCACTTCCCCCTTC 62.426 72.222 0.00 0.00 0.00 3.46
1197 3412 0.905357 GAACCTCCTGCTTCTGCCTA 59.095 55.000 0.00 0.00 38.71 3.93
1284 3505 3.542676 ACACCTTGGTGGACGCGA 61.543 61.111 21.98 0.00 39.71 5.87
1438 3659 1.074752 CTCGAAGCAGTTCCTCAAGC 58.925 55.000 0.00 0.00 0.00 4.01
1587 3808 5.832539 TTCTCACCCATCTCTTTCTTTCT 57.167 39.130 0.00 0.00 0.00 2.52
1592 3813 6.605119 TCACCCATCTCTTTCTTTCTTTCTT 58.395 36.000 0.00 0.00 0.00 2.52
1593 3814 7.062957 TCACCCATCTCTTTCTTTCTTTCTTT 58.937 34.615 0.00 0.00 0.00 2.52
1594 3815 7.229506 TCACCCATCTCTTTCTTTCTTTCTTTC 59.770 37.037 0.00 0.00 0.00 2.62
1595 3816 7.230309 CACCCATCTCTTTCTTTCTTTCTTTCT 59.770 37.037 0.00 0.00 0.00 2.52
1597 3818 8.637099 CCCATCTCTTTCTTTCTTTCTTTCTTT 58.363 33.333 0.00 0.00 0.00 2.52
1598 3819 9.676195 CCATCTCTTTCTTTCTTTCTTTCTTTC 57.324 33.333 0.00 0.00 0.00 2.62
1740 4000 4.522405 TCTTCAAATTTTCATTGCGAGGGA 59.478 37.500 0.00 0.00 0.00 4.20
1746 4006 4.963276 TTTTCATTGCGAGGGATAACAG 57.037 40.909 0.00 0.00 0.00 3.16
1791 4051 4.626604 GTCTTCATTCACTGCTCTCTGAAG 59.373 45.833 0.00 0.00 40.42 3.02
1819 4079 9.598517 GTTCAGCATATTAAATTTTCCAATGGA 57.401 29.630 0.00 0.00 0.00 3.41
1856 4116 6.944290 AGTGGGTTTCCATTTTAAGGTAGTAC 59.056 38.462 0.00 0.00 46.09 2.73
1857 4117 6.151648 GTGGGTTTCCATTTTAAGGTAGTACC 59.848 42.308 11.73 11.73 46.09 3.34
1858 4118 6.183361 TGGGTTTCCATTTTAAGGTAGTACCA 60.183 38.462 21.49 0.11 38.37 3.25
1869 4129 7.886629 TTAAGGTAGTACCAGTATACAGGTG 57.113 40.000 25.70 6.89 41.95 4.00
1873 4217 7.413446 AGGTAGTACCAGTATACAGGTGTTTA 58.587 38.462 25.70 14.00 41.95 2.01
1960 4304 4.595198 GTTCAGTTAACCGCTGGATTAC 57.405 45.455 0.88 0.00 34.89 1.89
2082 4428 2.073056 CGCACTGTATGTTTGGCTGTA 58.927 47.619 0.00 0.00 0.00 2.74
2098 4444 3.181494 GGCTGTAAACTGTTGTTCCGTTT 60.181 43.478 0.00 0.00 37.30 3.60
2190 4542 4.202419 TGGCCAATGTTGTAGTCTGTAGTT 60.202 41.667 0.61 0.00 0.00 2.24
2230 4582 6.487668 CAGATGTTATATGGGTTTCATGCTGA 59.512 38.462 0.00 0.00 37.30 4.26
2245 4597 4.156556 TCATGCTGAATGCTTTGTTAGTCC 59.843 41.667 0.00 0.00 43.37 3.85
2345 4700 4.141158 CCCCATCTAGGCACTCCTTATTTT 60.141 45.833 0.00 0.00 40.66 1.82
2360 4734 2.579410 ATTTTCGTACCAGCAACCCT 57.421 45.000 0.00 0.00 0.00 4.34
2365 4739 1.298859 CGTACCAGCAACCCTTCTGC 61.299 60.000 0.00 0.00 40.24 4.26
2432 4806 1.071385 CAGAGAGGATGTACCCATGCC 59.929 57.143 0.00 0.00 40.04 4.40
2438 4812 0.179018 GATGTACCCATGCCCCTGTC 60.179 60.000 0.00 0.00 0.00 3.51
2574 4949 5.240844 AGTTTGGTATTTTCTGTGTAGGCAC 59.759 40.000 0.00 0.00 45.44 5.01
2602 5136 9.939424 AGATTTTACTAGAATGTACTACTCCCT 57.061 33.333 0.00 0.00 0.00 4.20
2604 5138 8.530804 TTTTACTAGAATGTACTACTCCCTCC 57.469 38.462 0.00 0.00 0.00 4.30
2605 5139 5.728937 ACTAGAATGTACTACTCCCTCCA 57.271 43.478 0.00 0.00 0.00 3.86
2606 5140 6.282568 ACTAGAATGTACTACTCCCTCCAT 57.717 41.667 0.00 0.00 0.00 3.41
2607 5141 6.684538 ACTAGAATGTACTACTCCCTCCATT 58.315 40.000 0.00 0.00 0.00 3.16
2608 5142 6.778559 ACTAGAATGTACTACTCCCTCCATTC 59.221 42.308 0.00 0.00 38.80 2.67
2609 5143 4.902448 AGAATGTACTACTCCCTCCATTCC 59.098 45.833 0.00 0.00 39.13 3.01
2610 5144 4.561254 ATGTACTACTCCCTCCATTCCT 57.439 45.455 0.00 0.00 0.00 3.36
2611 5145 5.681494 ATGTACTACTCCCTCCATTCCTA 57.319 43.478 0.00 0.00 0.00 2.94
2612 5146 5.476950 TGTACTACTCCCTCCATTCCTAA 57.523 43.478 0.00 0.00 0.00 2.69
2613 5147 5.845734 TGTACTACTCCCTCCATTCCTAAA 58.154 41.667 0.00 0.00 0.00 1.85
2614 5148 6.449956 TGTACTACTCCCTCCATTCCTAAAT 58.550 40.000 0.00 0.00 0.00 1.40
2615 5149 7.598248 TGTACTACTCCCTCCATTCCTAAATA 58.402 38.462 0.00 0.00 0.00 1.40
2616 5150 8.239478 TGTACTACTCCCTCCATTCCTAAATAT 58.761 37.037 0.00 0.00 0.00 1.28
2617 5151 9.765295 GTACTACTCCCTCCATTCCTAAATATA 57.235 37.037 0.00 0.00 0.00 0.86
2619 5153 9.327731 ACTACTCCCTCCATTCCTAAATATAAG 57.672 37.037 0.00 0.00 0.00 1.73
2620 5154 9.327731 CTACTCCCTCCATTCCTAAATATAAGT 57.672 37.037 0.00 0.00 0.00 2.24
2621 5155 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
2622 5156 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
2623 5157 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
2624 5158 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
2625 5159 9.289782 CCCTCCATTCCTAAATATAAGTCTTTG 57.710 37.037 0.00 0.00 0.00 2.77
2626 5160 9.853177 CCTCCATTCCTAAATATAAGTCTTTGT 57.147 33.333 0.00 0.00 0.00 2.83
2642 5176 8.970859 AAGTCTTTGTAGAGATTCCATTATGG 57.029 34.615 4.57 4.57 39.43 2.74
2643 5177 8.324191 AGTCTTTGTAGAGATTCCATTATGGA 57.676 34.615 10.29 10.29 46.61 3.41
2656 5190 6.299805 TCCATTATGGACTACATATGGAGC 57.700 41.667 15.30 7.75 42.67 4.70
2657 5191 5.784906 TCCATTATGGACTACATATGGAGCA 59.215 40.000 15.30 6.30 42.67 4.26
2658 5192 6.070596 TCCATTATGGACTACATATGGAGCAG 60.071 42.308 15.30 4.79 42.67 4.24
2659 5193 6.070596 CCATTATGGACTACATATGGAGCAGA 60.071 42.308 15.30 0.31 40.96 4.26
2660 5194 6.994421 TTATGGACTACATATGGAGCAGAA 57.006 37.500 15.30 6.69 41.49 3.02
2661 5195 7.559335 TTATGGACTACATATGGAGCAGAAT 57.441 36.000 15.30 6.56 41.49 2.40
2662 5196 5.219343 TGGACTACATATGGAGCAGAATG 57.781 43.478 15.30 0.00 40.87 2.67
2663 5197 4.901250 TGGACTACATATGGAGCAGAATGA 59.099 41.667 15.30 0.00 39.69 2.57
2664 5198 5.011431 TGGACTACATATGGAGCAGAATGAG 59.989 44.000 15.30 0.00 39.69 2.90
2665 5199 5.011533 GGACTACATATGGAGCAGAATGAGT 59.988 44.000 15.30 0.00 39.69 3.41
2666 5200 6.209589 GGACTACATATGGAGCAGAATGAGTA 59.790 42.308 15.30 0.00 39.69 2.59
2667 5201 7.255977 GGACTACATATGGAGCAGAATGAGTAA 60.256 40.741 15.30 0.00 39.69 2.24
2668 5202 8.023021 ACTACATATGGAGCAGAATGAGTAAA 57.977 34.615 15.30 0.00 39.69 2.01
2669 5203 8.654997 ACTACATATGGAGCAGAATGAGTAAAT 58.345 33.333 15.30 0.00 39.69 1.40
2670 5204 7.976135 ACATATGGAGCAGAATGAGTAAATC 57.024 36.000 7.80 0.00 39.69 2.17
2671 5205 7.743749 ACATATGGAGCAGAATGAGTAAATCT 58.256 34.615 7.80 0.00 39.69 2.40
2672 5206 8.874156 ACATATGGAGCAGAATGAGTAAATCTA 58.126 33.333 7.80 0.00 39.69 1.98
2673 5207 9.149225 CATATGGAGCAGAATGAGTAAATCTAC 57.851 37.037 0.00 0.00 39.69 2.59
2674 5208 6.544928 TGGAGCAGAATGAGTAAATCTACA 57.455 37.500 0.00 0.00 39.69 2.74
2675 5209 6.341316 TGGAGCAGAATGAGTAAATCTACAC 58.659 40.000 0.00 0.00 39.69 2.90
2676 5210 6.155221 TGGAGCAGAATGAGTAAATCTACACT 59.845 38.462 0.00 0.00 39.69 3.55
2677 5211 6.699642 GGAGCAGAATGAGTAAATCTACACTC 59.300 42.308 0.00 0.00 39.69 3.51
2678 5212 7.416964 AGCAGAATGAGTAAATCTACACTCT 57.583 36.000 3.65 0.00 41.46 3.24
2679 5213 8.526667 AGCAGAATGAGTAAATCTACACTCTA 57.473 34.615 3.65 0.00 41.46 2.43
2680 5214 8.972127 AGCAGAATGAGTAAATCTACACTCTAA 58.028 33.333 3.65 0.00 41.46 2.10
2681 5215 9.587772 GCAGAATGAGTAAATCTACACTCTAAA 57.412 33.333 3.65 0.00 41.46 1.85
2686 5220 9.890629 ATGAGTAAATCTACACTCTAAAATGCA 57.109 29.630 0.00 0.00 41.46 3.96
2687 5221 9.890629 TGAGTAAATCTACACTCTAAAATGCAT 57.109 29.630 0.00 0.00 41.46 3.96
2692 5226 9.890629 AAATCTACACTCTAAAATGCATCTACA 57.109 29.630 0.00 0.00 0.00 2.74
2695 5229 9.967346 TCTACACTCTAAAATGCATCTACATAC 57.033 33.333 0.00 0.00 0.00 2.39
2696 5230 9.750125 CTACACTCTAAAATGCATCTACATACA 57.250 33.333 0.00 0.00 0.00 2.29
2698 5232 9.265901 ACACTCTAAAATGCATCTACATACATC 57.734 33.333 0.00 0.00 0.00 3.06
2699 5233 8.715998 CACTCTAAAATGCATCTACATACATCC 58.284 37.037 0.00 0.00 0.00 3.51
2700 5234 7.600375 ACTCTAAAATGCATCTACATACATCCG 59.400 37.037 0.00 0.00 0.00 4.18
2701 5235 7.441836 TCTAAAATGCATCTACATACATCCGT 58.558 34.615 0.00 0.00 0.00 4.69
2702 5236 8.581578 TCTAAAATGCATCTACATACATCCGTA 58.418 33.333 0.00 0.00 0.00 4.02
2703 5237 9.371136 CTAAAATGCATCTACATACATCCGTAT 57.629 33.333 0.00 0.00 38.96 3.06
2711 5245 3.385193 CATACATCCGTATGTGCTCCA 57.615 47.619 3.56 0.00 46.70 3.86
2712 5246 3.930336 CATACATCCGTATGTGCTCCAT 58.070 45.455 3.56 0.00 46.70 3.41
2713 5247 5.072040 CATACATCCGTATGTGCTCCATA 57.928 43.478 3.56 0.00 46.70 2.74
2714 5248 3.667497 ACATCCGTATGTGCTCCATAG 57.333 47.619 0.00 0.00 44.79 2.23
2715 5249 2.289072 ACATCCGTATGTGCTCCATAGC 60.289 50.000 0.00 0.00 44.79 2.97
2716 5250 5.709071 ACATCCGTATGTGCTCCATAGCG 62.709 52.174 0.00 5.12 44.79 4.26
2727 5261 4.244425 GCTCCATAGCGAAATCTCTACA 57.756 45.455 0.00 0.00 39.39 2.74
2728 5262 4.621991 GCTCCATAGCGAAATCTCTACAA 58.378 43.478 0.00 0.00 39.39 2.41
2729 5263 5.050490 GCTCCATAGCGAAATCTCTACAAA 58.950 41.667 0.00 0.00 39.39 2.83
2730 5264 5.176590 GCTCCATAGCGAAATCTCTACAAAG 59.823 44.000 0.00 0.00 39.39 2.77
2731 5265 6.465439 TCCATAGCGAAATCTCTACAAAGA 57.535 37.500 0.00 0.00 0.00 2.52
2732 5266 6.273825 TCCATAGCGAAATCTCTACAAAGAC 58.726 40.000 0.00 0.00 0.00 3.01
2733 5267 6.096987 TCCATAGCGAAATCTCTACAAAGACT 59.903 38.462 0.00 0.00 0.00 3.24
2734 5268 6.758886 CCATAGCGAAATCTCTACAAAGACTT 59.241 38.462 0.00 0.00 0.00 3.01
2735 5269 7.921214 CCATAGCGAAATCTCTACAAAGACTTA 59.079 37.037 0.00 0.00 0.00 2.24
2736 5270 9.469807 CATAGCGAAATCTCTACAAAGACTTAT 57.530 33.333 0.00 0.00 0.00 1.73
2751 5285 9.853177 ACAAAGACTTATATTTAGGAATGAGGG 57.147 33.333 0.00 0.00 0.00 4.30
2754 5288 9.453830 AAGACTTATATTTAGGAATGAGGGAGT 57.546 33.333 0.00 0.00 0.00 3.85
2915 5450 5.624344 TTAAAGTCTCTCTGTCTGTACGG 57.376 43.478 0.00 0.00 0.00 4.02
3039 5603 7.721842 TCCATAAAAAGAGAAACACATACACCA 59.278 33.333 0.00 0.00 0.00 4.17
3040 5604 7.807907 CCATAAAAAGAGAAACACATACACCAC 59.192 37.037 0.00 0.00 0.00 4.16
3041 5605 8.567948 CATAAAAAGAGAAACACATACACCACT 58.432 33.333 0.00 0.00 0.00 4.00
3042 5606 7.404671 AAAAAGAGAAACACATACACCACTT 57.595 32.000 0.00 0.00 0.00 3.16
3043 5607 6.619801 AAAGAGAAACACATACACCACTTC 57.380 37.500 0.00 0.00 0.00 3.01
3044 5608 4.642429 AGAGAAACACATACACCACTTCC 58.358 43.478 0.00 0.00 0.00 3.46
3045 5609 4.102524 AGAGAAACACATACACCACTTCCA 59.897 41.667 0.00 0.00 0.00 3.53
3047 5611 4.761739 AGAAACACATACACCACTTCCATG 59.238 41.667 0.00 0.00 0.00 3.66
3048 5612 3.788227 ACACATACACCACTTCCATGT 57.212 42.857 0.00 0.00 0.00 3.21
3049 5613 4.098914 ACACATACACCACTTCCATGTT 57.901 40.909 0.00 0.00 0.00 2.71
3050 5614 4.469657 ACACATACACCACTTCCATGTTT 58.530 39.130 0.00 0.00 0.00 2.83
3051 5615 4.518970 ACACATACACCACTTCCATGTTTC 59.481 41.667 0.00 0.00 0.00 2.78
3052 5616 4.518590 CACATACACCACTTCCATGTTTCA 59.481 41.667 0.00 0.00 0.00 2.69
3053 5617 5.183713 CACATACACCACTTCCATGTTTCAT 59.816 40.000 0.00 0.00 0.00 2.57
3054 5618 5.183713 ACATACACCACTTCCATGTTTCATG 59.816 40.000 3.11 3.11 0.00 3.07
3055 5619 2.297033 ACACCACTTCCATGTTTCATGC 59.703 45.455 4.43 0.00 0.00 4.06
3056 5620 2.559668 CACCACTTCCATGTTTCATGCT 59.440 45.455 4.43 0.00 0.00 3.79
3057 5621 2.821969 ACCACTTCCATGTTTCATGCTC 59.178 45.455 4.43 0.00 0.00 4.26
3058 5622 2.159476 CCACTTCCATGTTTCATGCTCG 60.159 50.000 4.43 0.00 0.00 5.03
3059 5623 2.086869 ACTTCCATGTTTCATGCTCGG 58.913 47.619 4.43 0.00 0.00 4.63
3060 5624 0.810648 TTCCATGTTTCATGCTCGGC 59.189 50.000 4.43 0.00 0.00 5.54
3061 5625 0.322366 TCCATGTTTCATGCTCGGCA 60.322 50.000 1.01 1.01 44.86 5.69
3076 5640 4.454948 GCATACGCCTGCCATGTA 57.545 55.556 0.00 0.00 36.10 2.29
3077 5641 2.238353 GCATACGCCTGCCATGTAG 58.762 57.895 0.00 0.00 36.10 2.74
3115 6263 1.544724 TTCCTGCCAATTGCTACACC 58.455 50.000 0.00 0.00 42.00 4.16
3126 6274 6.092748 CCAATTGCTACACCACTTTTACATC 58.907 40.000 0.00 0.00 0.00 3.06
3286 6434 3.638160 TGCTGGCAATATGGAATTTCTCC 59.362 43.478 0.00 0.00 45.64 3.71
3293 6441 6.041296 GGCAATATGGAATTTCTCCTCACATT 59.959 38.462 0.00 0.00 45.64 2.71
3346 6526 6.934645 TCAGTAATTGACCAAGTAACTTCTGG 59.065 38.462 0.00 0.00 0.00 3.86
3476 6657 4.558226 TCTGTTGGAACACATCTGCTAT 57.442 40.909 0.00 0.00 39.29 2.97
3478 6659 6.048732 TCTGTTGGAACACATCTGCTATTA 57.951 37.500 0.00 0.00 39.29 0.98
3480 6661 6.539826 TCTGTTGGAACACATCTGCTATTATG 59.460 38.462 0.00 0.00 39.29 1.90
3509 6773 3.898123 GAGAGAGAGAGAGAGAGAGCCTA 59.102 52.174 0.00 0.00 0.00 3.93
3548 6813 1.602920 GCGGGGCTTTCTGAAAGTTTG 60.603 52.381 26.02 16.49 40.64 2.93
3556 6821 4.495844 GCTTTCTGAAAGTTTGTACGCACT 60.496 41.667 26.02 0.00 40.64 4.40
3557 6822 5.554822 TTTCTGAAAGTTTGTACGCACTT 57.445 34.783 0.00 4.10 34.58 3.16
3558 6823 5.554822 TTCTGAAAGTTTGTACGCACTTT 57.445 34.783 17.73 17.73 44.26 2.66
3559 6824 4.904116 TCTGAAAGTTTGTACGCACTTTG 58.096 39.130 21.06 11.51 42.15 2.77
3560 6825 3.430931 TGAAAGTTTGTACGCACTTTGC 58.569 40.909 21.06 14.60 42.15 3.68
3561 6826 3.119814 TGAAAGTTTGTACGCACTTTGCA 60.120 39.130 21.06 16.23 45.36 4.08
3562 6827 2.755836 AGTTTGTACGCACTTTGCAG 57.244 45.000 0.00 0.00 45.36 4.41
3563 6828 2.014128 AGTTTGTACGCACTTTGCAGT 58.986 42.857 0.00 0.59 45.36 4.40
3564 6829 3.199677 AGTTTGTACGCACTTTGCAGTA 58.800 40.909 0.00 0.00 45.36 2.74
3565 6830 3.247648 AGTTTGTACGCACTTTGCAGTAG 59.752 43.478 0.00 0.00 45.36 2.57
3566 6831 2.804697 TGTACGCACTTTGCAGTAGA 57.195 45.000 5.06 0.00 45.36 2.59
3567 6832 3.313012 TGTACGCACTTTGCAGTAGAT 57.687 42.857 5.06 0.00 45.36 1.98
3568 6833 3.659786 TGTACGCACTTTGCAGTAGATT 58.340 40.909 5.06 0.00 45.36 2.40
3569 6834 3.678072 TGTACGCACTTTGCAGTAGATTC 59.322 43.478 5.06 0.00 45.36 2.52
3570 6835 3.045601 ACGCACTTTGCAGTAGATTCT 57.954 42.857 5.06 0.00 45.36 2.40
3571 6836 2.738846 ACGCACTTTGCAGTAGATTCTG 59.261 45.455 5.06 0.00 45.36 3.02
3572 6837 2.995939 CGCACTTTGCAGTAGATTCTGA 59.004 45.455 5.06 0.00 45.36 3.27
3573 6838 3.620374 CGCACTTTGCAGTAGATTCTGAT 59.380 43.478 5.06 0.00 45.36 2.90
3574 6839 4.493708 CGCACTTTGCAGTAGATTCTGATG 60.494 45.833 5.06 0.00 45.36 3.07
3575 6840 4.394300 GCACTTTGCAGTAGATTCTGATGT 59.606 41.667 5.06 0.00 44.26 3.06
3576 6841 5.106396 GCACTTTGCAGTAGATTCTGATGTT 60.106 40.000 5.06 0.00 44.26 2.71
3652 6918 4.037565 GTCGAAGGAAACCCATCAGTTTTT 59.962 41.667 0.00 0.00 40.01 1.94
3746 7012 6.092259 ACTTGTCTGTTTAATATGGCGAGAAC 59.908 38.462 0.00 0.00 0.00 3.01
3755 7021 0.911769 ATGGCGAGAACTGAATGGGA 59.088 50.000 0.00 0.00 0.00 4.37
3908 7174 1.336424 TGCTGACTATCGTTGACGCAA 60.336 47.619 0.00 0.00 39.60 4.85
3974 7240 3.877559 TCTGGTGAGATTGCTGTTATGG 58.122 45.455 0.00 0.00 0.00 2.74
3993 7259 1.538419 GGCGAGTAAGATGGTGGCTAC 60.538 57.143 0.00 0.00 0.00 3.58
4000 7266 6.622427 AGTAAGATGGTGGCTACTTTAAGT 57.378 37.500 2.32 2.32 0.00 2.24
4129 7398 6.986817 ACACAGATATGGTGCAGTTAATACTC 59.013 38.462 0.00 0.00 39.87 2.59
4174 7443 3.973657 TCCTTACTCTCACGTGTTTGAC 58.026 45.455 16.51 0.00 0.00 3.18
4380 7652 2.164422 GCTACTTTGAGGAATGTTGGGC 59.836 50.000 0.00 0.00 0.00 5.36
4399 7671 2.744202 GGCTCCACTTGTACTGTCATTG 59.256 50.000 0.00 0.00 0.00 2.82
4400 7672 3.557054 GGCTCCACTTGTACTGTCATTGA 60.557 47.826 0.00 0.00 0.00 2.57
4546 7818 5.849081 GCGAGACGAGATAAAGAATCTAGTG 59.151 44.000 5.64 0.00 46.76 2.74
4551 7823 9.357161 AGACGAGATAAAGAATCTAGTGGTTAT 57.643 33.333 5.64 0.00 46.76 1.89
4580 7852 2.707849 GCCTTCCTGCATGCACTGG 61.708 63.158 18.46 18.05 0.00 4.00
4581 7853 2.707849 CCTTCCTGCATGCACTGGC 61.708 63.158 18.46 0.00 41.68 4.85
4636 7908 2.881074 CGATTGATGTCACGAAGGAGT 58.119 47.619 0.00 0.00 0.00 3.85
4637 7909 2.854777 CGATTGATGTCACGAAGGAGTC 59.145 50.000 0.00 0.00 0.00 3.36
4756 8028 6.912951 ACCTGTATACTATGTATCACCACC 57.087 41.667 4.17 0.00 0.00 4.61
4757 8029 5.778750 ACCTGTATACTATGTATCACCACCC 59.221 44.000 4.17 0.00 0.00 4.61
4758 8030 6.017192 CCTGTATACTATGTATCACCACCCT 58.983 44.000 4.17 0.00 0.00 4.34
4759 8031 6.497259 CCTGTATACTATGTATCACCACCCTT 59.503 42.308 4.17 0.00 0.00 3.95
4760 8032 7.297936 TGTATACTATGTATCACCACCCTTG 57.702 40.000 4.17 0.00 0.00 3.61
4860 8133 0.390472 GGCTCTGCTGAGTGTACACC 60.390 60.000 22.28 13.98 42.13 4.16
4922 8195 7.926674 TCTTGATTCTTCTTTGATGTATGCA 57.073 32.000 0.00 0.00 0.00 3.96
4975 8248 7.253905 ACAGTACCCTACATTGAGTAAACAT 57.746 36.000 0.00 0.00 30.92 2.71
5065 8338 7.445121 TGAGTGAGAAGTTAACATCTGACAAT 58.555 34.615 25.24 14.78 31.81 2.71
5120 8396 5.070446 TGAATATGATAGCGTCTTCAGGGTT 59.930 40.000 0.00 0.00 0.00 4.11
5128 8404 2.029290 GCGTCTTCAGGGTTAGTCTCAA 60.029 50.000 0.00 0.00 0.00 3.02
5151 8447 1.411977 AGTCAATCTCCTGATGAGCCG 59.588 52.381 0.00 0.00 41.18 5.52
5159 8455 1.220206 CTGATGAGCCGCACCTTCT 59.780 57.895 0.00 0.00 0.00 2.85
5160 8456 0.461548 CTGATGAGCCGCACCTTCTA 59.538 55.000 0.00 0.00 0.00 2.10
5162 8458 0.461961 GATGAGCCGCACCTTCTACT 59.538 55.000 0.00 0.00 0.00 2.57
5175 8471 2.420687 CCTTCTACTGTGGCCTCCATTC 60.421 54.545 3.32 0.00 35.28 2.67
5181 8477 4.802051 TGGCCTCCATTCGCTGCC 62.802 66.667 3.32 0.00 42.49 4.85
5207 8503 2.358582 CACTTGTTGTCCATGCAACTCA 59.641 45.455 14.68 4.14 46.33 3.41
5268 8564 3.443925 CGCCTCCTCTCAGCGTCA 61.444 66.667 0.00 0.00 44.65 4.35
5293 8708 7.284034 CAGGTCAATATTGGCAAACTCTATCTT 59.716 37.037 21.02 0.00 33.59 2.40
5294 8709 7.836183 AGGTCAATATTGGCAAACTCTATCTTT 59.164 33.333 21.02 0.00 33.59 2.52
5295 8710 8.470002 GGTCAATATTGGCAAACTCTATCTTTT 58.530 33.333 21.02 0.00 33.59 2.27
5296 8711 9.860898 GTCAATATTGGCAAACTCTATCTTTTT 57.139 29.630 15.16 0.00 31.86 1.94
5317 8732 2.700722 TTTTTGAGGGGTTGGCAAAC 57.299 45.000 6.75 6.75 31.89 2.93
5318 8733 1.872773 TTTTGAGGGGTTGGCAAACT 58.127 45.000 15.94 7.63 36.48 2.66
5319 8734 1.408969 TTTGAGGGGTTGGCAAACTC 58.591 50.000 15.94 11.94 35.89 3.01
5320 8735 0.555769 TTGAGGGGTTGGCAAACTCT 59.444 50.000 19.61 19.61 36.94 3.24
5321 8736 1.440618 TGAGGGGTTGGCAAACTCTA 58.559 50.000 19.53 3.88 36.94 2.43
5322 8737 1.992557 TGAGGGGTTGGCAAACTCTAT 59.007 47.619 19.53 0.00 36.94 1.98
5323 8738 2.026262 TGAGGGGTTGGCAAACTCTATC 60.026 50.000 19.53 7.61 36.94 2.08
5324 8739 2.239907 GAGGGGTTGGCAAACTCTATCT 59.760 50.000 19.53 6.50 36.94 1.98
5331 8746 5.582665 GGTTGGCAAACTCTATCTGTTCTAG 59.417 44.000 8.31 0.00 36.48 2.43
5344 8759 1.911269 TTCTAGGCCGTGAGCACCA 60.911 57.895 0.00 0.00 46.50 4.17
5372 8810 2.482326 CCAATCGGCTCAAGGTTCC 58.518 57.895 0.00 0.00 0.00 3.62
5373 8811 1.032114 CCAATCGGCTCAAGGTTCCC 61.032 60.000 0.00 0.00 0.00 3.97
5374 8812 0.322456 CAATCGGCTCAAGGTTCCCA 60.322 55.000 0.00 0.00 0.00 4.37
5375 8813 0.404040 AATCGGCTCAAGGTTCCCAA 59.596 50.000 0.00 0.00 0.00 4.12
5376 8814 0.625849 ATCGGCTCAAGGTTCCCAAT 59.374 50.000 0.00 0.00 0.00 3.16
5377 8815 1.281419 TCGGCTCAAGGTTCCCAATA 58.719 50.000 0.00 0.00 0.00 1.90
5378 8816 1.843851 TCGGCTCAAGGTTCCCAATAT 59.156 47.619 0.00 0.00 0.00 1.28
5379 8817 1.949525 CGGCTCAAGGTTCCCAATATG 59.050 52.381 0.00 0.00 0.00 1.78
5380 8818 2.310538 GGCTCAAGGTTCCCAATATGG 58.689 52.381 0.00 0.00 37.25 2.74
5381 8819 1.683385 GCTCAAGGTTCCCAATATGGC 59.317 52.381 0.00 0.00 35.79 4.40
5382 8820 2.310538 CTCAAGGTTCCCAATATGGCC 58.689 52.381 0.00 0.00 35.79 5.36
5383 8821 1.032014 CAAGGTTCCCAATATGGCCG 58.968 55.000 0.00 0.00 35.79 6.13
5411 8849 4.855531 CCGTTTGGGTTTCTCACTTTTAG 58.144 43.478 0.00 0.00 0.00 1.85
5445 8884 5.329035 ACTATTACCCGTTTCTTTCGCTA 57.671 39.130 0.00 0.00 0.00 4.26
5764 9267 7.707104 AGGTACAAGAACTTTTTCTCAACATG 58.293 34.615 0.00 0.00 41.56 3.21
5892 9419 1.079543 CCTTCAGGCGAGTGAGTGG 60.080 63.158 0.00 0.00 0.00 4.00
5899 9426 1.300931 GCGAGTGAGTGGCAGAACA 60.301 57.895 0.00 0.00 0.00 3.18
5913 9440 2.683742 GCAGAACATTGCTTAGGGCCTA 60.684 50.000 9.81 9.81 40.89 3.93
5928 9455 1.478105 GGCCTATTTGGGACTGCTTTG 59.522 52.381 0.00 0.00 36.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 9.158233 CCGTTCCTAAATGTAAATCTTTGTAGA 57.842 33.333 0.00 0.00 34.21 2.59
61 62 9.158233 TCCGTTCCTAAATGTAAATCTTTGTAG 57.842 33.333 0.00 0.00 0.00 2.74
62 63 9.504708 TTCCGTTCCTAAATGTAAATCTTTGTA 57.495 29.630 0.00 0.00 0.00 2.41
63 64 7.989416 TCCGTTCCTAAATGTAAATCTTTGT 57.011 32.000 0.00 0.00 0.00 2.83
64 65 7.968405 CCTTCCGTTCCTAAATGTAAATCTTTG 59.032 37.037 0.00 0.00 0.00 2.77
65 66 7.886446 TCCTTCCGTTCCTAAATGTAAATCTTT 59.114 33.333 0.00 0.00 0.00 2.52
66 67 7.399634 TCCTTCCGTTCCTAAATGTAAATCTT 58.600 34.615 0.00 0.00 0.00 2.40
67 68 6.954232 TCCTTCCGTTCCTAAATGTAAATCT 58.046 36.000 0.00 0.00 0.00 2.40
68 69 6.822170 ACTCCTTCCGTTCCTAAATGTAAATC 59.178 38.462 0.00 0.00 0.00 2.17
69 70 6.718294 ACTCCTTCCGTTCCTAAATGTAAAT 58.282 36.000 0.00 0.00 0.00 1.40
70 71 6.117975 ACTCCTTCCGTTCCTAAATGTAAA 57.882 37.500 0.00 0.00 0.00 2.01
71 72 5.750352 ACTCCTTCCGTTCCTAAATGTAA 57.250 39.130 0.00 0.00 0.00 2.41
72 73 8.416329 GTTATACTCCTTCCGTTCCTAAATGTA 58.584 37.037 0.00 0.00 0.00 2.29
73 74 5.952347 ATACTCCTTCCGTTCCTAAATGT 57.048 39.130 0.00 0.00 0.00 2.71
74 75 7.498443 AGTTATACTCCTTCCGTTCCTAAATG 58.502 38.462 0.00 0.00 0.00 2.32
75 76 7.672122 AGTTATACTCCTTCCGTTCCTAAAT 57.328 36.000 0.00 0.00 0.00 1.40
76 77 7.486407 AAGTTATACTCCTTCCGTTCCTAAA 57.514 36.000 0.00 0.00 0.00 1.85
77 78 7.486407 AAAGTTATACTCCTTCCGTTCCTAA 57.514 36.000 0.00 0.00 0.00 2.69
78 79 8.773033 ATAAAGTTATACTCCTTCCGTTCCTA 57.227 34.615 0.00 0.00 0.00 2.94
79 80 7.672122 ATAAAGTTATACTCCTTCCGTTCCT 57.328 36.000 0.00 0.00 0.00 3.36
80 81 8.809159 GTATAAAGTTATACTCCTTCCGTTCC 57.191 38.462 12.12 0.00 41.30 3.62
104 105 8.827677 GTGTCTCAACTTTGTACTAATTTCAGT 58.172 33.333 0.00 0.00 0.00 3.41
105 106 9.046296 AGTGTCTCAACTTTGTACTAATTTCAG 57.954 33.333 0.00 0.00 0.00 3.02
106 107 8.958119 AGTGTCTCAACTTTGTACTAATTTCA 57.042 30.769 0.00 0.00 0.00 2.69
113 114 9.391006 TCAAAATAAGTGTCTCAACTTTGTACT 57.609 29.630 0.00 0.00 40.77 2.73
114 115 9.997482 TTCAAAATAAGTGTCTCAACTTTGTAC 57.003 29.630 0.00 0.00 40.77 2.90
116 117 9.353999 GTTTCAAAATAAGTGTCTCAACTTTGT 57.646 29.630 0.00 0.00 40.77 2.83
117 118 8.523464 CGTTTCAAAATAAGTGTCTCAACTTTG 58.477 33.333 0.00 0.00 40.77 2.77
118 119 7.700656 CCGTTTCAAAATAAGTGTCTCAACTTT 59.299 33.333 0.00 0.00 40.77 2.66
119 120 7.066525 TCCGTTTCAAAATAAGTGTCTCAACTT 59.933 33.333 0.00 0.00 42.89 2.66
120 121 6.540914 TCCGTTTCAAAATAAGTGTCTCAACT 59.459 34.615 0.00 0.00 0.00 3.16
121 122 6.721321 TCCGTTTCAAAATAAGTGTCTCAAC 58.279 36.000 0.00 0.00 0.00 3.18
122 123 6.512741 GCTCCGTTTCAAAATAAGTGTCTCAA 60.513 38.462 0.00 0.00 0.00 3.02
123 124 5.049680 GCTCCGTTTCAAAATAAGTGTCTCA 60.050 40.000 0.00 0.00 0.00 3.27
124 125 5.383130 GCTCCGTTTCAAAATAAGTGTCTC 58.617 41.667 0.00 0.00 0.00 3.36
125 126 4.084013 CGCTCCGTTTCAAAATAAGTGTCT 60.084 41.667 0.00 0.00 0.00 3.41
126 127 4.084223 TCGCTCCGTTTCAAAATAAGTGTC 60.084 41.667 0.00 0.00 0.00 3.67
127 128 3.810941 TCGCTCCGTTTCAAAATAAGTGT 59.189 39.130 0.00 0.00 0.00 3.55
128 129 4.084013 ACTCGCTCCGTTTCAAAATAAGTG 60.084 41.667 0.00 0.00 0.00 3.16
129 130 4.062991 ACTCGCTCCGTTTCAAAATAAGT 58.937 39.130 0.00 0.00 0.00 2.24
130 131 4.663636 ACTCGCTCCGTTTCAAAATAAG 57.336 40.909 0.00 0.00 0.00 1.73
131 132 6.730960 ATTACTCGCTCCGTTTCAAAATAA 57.269 33.333 0.00 0.00 0.00 1.40
132 133 6.019318 GCTATTACTCGCTCCGTTTCAAAATA 60.019 38.462 0.00 0.00 0.00 1.40
133 134 5.220605 GCTATTACTCGCTCCGTTTCAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
134 135 4.092383 GCTATTACTCGCTCCGTTTCAAAA 59.908 41.667 0.00 0.00 0.00 2.44
135 136 3.615496 GCTATTACTCGCTCCGTTTCAAA 59.385 43.478 0.00 0.00 0.00 2.69
136 137 3.184541 GCTATTACTCGCTCCGTTTCAA 58.815 45.455 0.00 0.00 0.00 2.69
137 138 2.164827 TGCTATTACTCGCTCCGTTTCA 59.835 45.455 0.00 0.00 0.00 2.69
138 139 2.789893 CTGCTATTACTCGCTCCGTTTC 59.210 50.000 0.00 0.00 0.00 2.78
139 140 2.810650 CTGCTATTACTCGCTCCGTTT 58.189 47.619 0.00 0.00 0.00 3.60
140 141 1.536284 GCTGCTATTACTCGCTCCGTT 60.536 52.381 0.00 0.00 0.00 4.44
141 142 0.030908 GCTGCTATTACTCGCTCCGT 59.969 55.000 0.00 0.00 0.00 4.69
142 143 0.030773 TGCTGCTATTACTCGCTCCG 59.969 55.000 0.00 0.00 0.00 4.63
143 144 1.202417 TGTGCTGCTATTACTCGCTCC 60.202 52.381 0.00 0.00 0.00 4.70
144 145 2.209838 TGTGCTGCTATTACTCGCTC 57.790 50.000 0.00 0.00 0.00 5.03
145 146 2.672961 TTGTGCTGCTATTACTCGCT 57.327 45.000 0.00 0.00 0.00 4.93
146 147 2.415168 TGTTTGTGCTGCTATTACTCGC 59.585 45.455 0.00 0.00 0.00 5.03
147 148 4.661993 TTGTTTGTGCTGCTATTACTCG 57.338 40.909 0.00 0.00 0.00 4.18
148 149 5.858581 CCTTTTGTTTGTGCTGCTATTACTC 59.141 40.000 0.00 0.00 0.00 2.59
149 150 5.772521 CCTTTTGTTTGTGCTGCTATTACT 58.227 37.500 0.00 0.00 0.00 2.24
150 151 4.385748 GCCTTTTGTTTGTGCTGCTATTAC 59.614 41.667 0.00 0.00 0.00 1.89
151 152 4.038522 TGCCTTTTGTTTGTGCTGCTATTA 59.961 37.500 0.00 0.00 0.00 0.98
152 153 3.181467 TGCCTTTTGTTTGTGCTGCTATT 60.181 39.130 0.00 0.00 0.00 1.73
153 154 2.364970 TGCCTTTTGTTTGTGCTGCTAT 59.635 40.909 0.00 0.00 0.00 2.97
154 155 1.753649 TGCCTTTTGTTTGTGCTGCTA 59.246 42.857 0.00 0.00 0.00 3.49
155 156 0.536260 TGCCTTTTGTTTGTGCTGCT 59.464 45.000 0.00 0.00 0.00 4.24
167 168 0.879839 GGTTTGCGCATGTGCCTTTT 60.880 50.000 27.42 0.00 37.91 2.27
172 173 1.074319 CTGATGGTTTGCGCATGTGC 61.074 55.000 24.25 24.25 37.78 4.57
183 184 0.036010 CGCCAAGACCTCTGATGGTT 60.036 55.000 0.00 0.00 41.00 3.67
207 212 1.000145 GCTTCCGAACCGAACTGATC 59.000 55.000 0.00 0.00 0.00 2.92
253 262 2.544685 CAGGTCGCTCCATAAACTGAG 58.455 52.381 0.00 0.00 39.02 3.35
254 263 1.207089 CCAGGTCGCTCCATAAACTGA 59.793 52.381 0.00 0.00 39.02 3.41
255 264 1.656652 CCAGGTCGCTCCATAAACTG 58.343 55.000 0.00 0.00 39.02 3.16
256 265 0.107654 GCCAGGTCGCTCCATAAACT 60.108 55.000 0.00 0.00 39.02 2.66
257 266 1.095807 GGCCAGGTCGCTCCATAAAC 61.096 60.000 0.00 0.00 39.02 2.01
258 267 1.223487 GGCCAGGTCGCTCCATAAA 59.777 57.895 0.00 0.00 39.02 1.40
259 268 1.689233 AGGCCAGGTCGCTCCATAA 60.689 57.895 5.01 0.00 39.02 1.90
260 269 2.041922 AGGCCAGGTCGCTCCATA 60.042 61.111 5.01 0.00 39.02 2.74
261 270 3.790437 CAGGCCAGGTCGCTCCAT 61.790 66.667 5.01 0.00 39.02 3.41
292 301 1.269309 CGGAAAGAGGCCTATCTCGTG 60.269 57.143 4.42 0.00 38.71 4.35
382 391 1.424493 CTGAATCCGAAGCGTGCTCC 61.424 60.000 0.00 0.00 0.00 4.70
385 394 1.014044 TGTCTGAATCCGAAGCGTGC 61.014 55.000 0.00 0.00 0.00 5.34
413 422 0.877071 GCTATGTTGCGGGGATGATG 59.123 55.000 0.00 0.00 0.00 3.07
414 423 3.329300 GCTATGTTGCGGGGATGAT 57.671 52.632 0.00 0.00 0.00 2.45
415 424 4.876701 GCTATGTTGCGGGGATGA 57.123 55.556 0.00 0.00 0.00 2.92
423 432 3.795561 ATATCTTTCGCGCTATGTTGC 57.204 42.857 5.56 0.00 0.00 4.17
426 435 5.584253 AGGATATATCTTTCGCGCTATGT 57.416 39.130 12.42 0.00 0.00 2.29
428 437 6.694877 TGTAGGATATATCTTTCGCGCTAT 57.305 37.500 12.42 0.00 0.00 2.97
431 966 7.115095 GGATAATGTAGGATATATCTTTCGCGC 59.885 40.741 12.42 0.00 0.00 6.86
433 968 7.115095 GCGGATAATGTAGGATATATCTTTCGC 59.885 40.741 12.42 10.23 31.24 4.70
450 985 1.506493 GACTGGCTGAGCGGATAATG 58.494 55.000 0.00 0.00 0.00 1.90
458 993 1.226435 CTCGTACGACTGGCTGAGC 60.226 63.158 15.28 0.00 0.00 4.26
462 997 2.806608 TTTTTCTCGTACGACTGGCT 57.193 45.000 15.28 0.00 0.00 4.75
467 1003 4.629065 CAGCAAGATTTTTCTCGTACGAC 58.371 43.478 15.28 2.50 0.00 4.34
469 1005 3.408150 GCAGCAAGATTTTTCTCGTACG 58.592 45.455 9.53 9.53 0.00 3.67
510 1046 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
512 1048 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
514 1050 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
515 1051 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
516 1052 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
520 2497 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
558 2628 1.990060 TGGTACTGGCAGAGAGGGC 60.990 63.158 23.66 4.04 0.00 5.19
559 2629 0.616111 AGTGGTACTGGCAGAGAGGG 60.616 60.000 23.66 0.00 0.00 4.30
564 2660 5.702266 ACATATACTAGTGGTACTGGCAGA 58.298 41.667 23.66 1.56 32.72 4.26
595 2710 9.774742 GATTTTTGCTTGTAATACTACTCCAAG 57.225 33.333 0.00 0.00 36.47 3.61
666 2781 3.234386 GCATTACAGCAAAAACGTCCTC 58.766 45.455 0.00 0.00 0.00 3.71
690 2805 6.070653 ACGTACTCCCCTTGTAATCAAATGTA 60.071 38.462 0.00 0.00 32.87 2.29
705 2820 3.627577 TCGTAGTGAATTACGTACTCCCC 59.372 47.826 0.00 0.00 44.95 4.81
708 2823 9.574401 GTAGTATTCGTAGTGAATTACGTACTC 57.426 37.037 10.07 0.00 45.06 2.59
737 2852 6.837992 TGAATCGCCTACTTCAAATTGTTAC 58.162 36.000 0.00 0.00 0.00 2.50
739 2854 5.957842 TGAATCGCCTACTTCAAATTGTT 57.042 34.783 0.00 0.00 0.00 2.83
755 2870 3.557577 TTGCACTGGTCATTTGAATCG 57.442 42.857 0.00 0.00 0.00 3.34
760 2875 3.742369 GGAATGTTTGCACTGGTCATTTG 59.258 43.478 0.00 0.00 0.00 2.32
769 2884 7.112122 TCTCAATAGTATGGAATGTTTGCACT 58.888 34.615 0.00 0.00 32.41 4.40
801 2916 2.742348 TGGTATAGAAACGCCTCCTCA 58.258 47.619 0.00 0.00 0.00 3.86
814 2929 8.047310 AGGTCTACAAAGGTTTGATTGGTATAG 58.953 37.037 9.42 0.00 40.55 1.31
829 2965 2.875933 TGCAAAACCGAGGTCTACAAAG 59.124 45.455 0.00 0.00 0.00 2.77
833 2969 1.001633 TCCTGCAAAACCGAGGTCTAC 59.998 52.381 0.00 0.00 0.00 2.59
836 2972 0.955919 CCTCCTGCAAAACCGAGGTC 60.956 60.000 0.00 0.00 37.67 3.85
849 2985 4.335874 CAGCTGAATGAAAATCTCCTCCTG 59.664 45.833 8.42 0.00 0.00 3.86
855 2991 3.678662 GCGACAGCTGAATGAAAATCTC 58.321 45.455 23.35 1.83 41.01 2.75
869 3005 2.576317 GACGACGGTAGCGACAGC 60.576 66.667 22.88 5.75 45.58 4.40
870 3006 0.386352 TTTGACGACGGTAGCGACAG 60.386 55.000 22.88 13.37 35.21 3.51
872 3008 1.319669 GAATTTGACGACGGTAGCGAC 59.680 52.381 22.88 14.40 0.00 5.19
892 3084 3.588955 GGTGCTCTTAATTTTTGGCTGG 58.411 45.455 0.00 0.00 0.00 4.85
902 3094 1.372501 AGTGGGTGGGTGCTCTTAAT 58.627 50.000 0.00 0.00 0.00 1.40
907 3099 2.034221 GGAAGTGGGTGGGTGCTC 59.966 66.667 0.00 0.00 0.00 4.26
908 3100 3.580319 GGGAAGTGGGTGGGTGCT 61.580 66.667 0.00 0.00 0.00 4.40
909 3101 4.678743 GGGGAAGTGGGTGGGTGC 62.679 72.222 0.00 0.00 0.00 5.01
910 3102 3.979497 GGGGGAAGTGGGTGGGTG 61.979 72.222 0.00 0.00 0.00 4.61
911 3103 3.768265 AAGGGGGAAGTGGGTGGGT 62.768 63.158 0.00 0.00 0.00 4.51
912 3104 2.478803 AAAGGGGGAAGTGGGTGGG 61.479 63.158 0.00 0.00 0.00 4.61
913 3105 1.228862 CAAAGGGGGAAGTGGGTGG 60.229 63.158 0.00 0.00 0.00 4.61
914 3106 1.908299 GCAAAGGGGGAAGTGGGTG 60.908 63.158 0.00 0.00 0.00 4.61
921 3113 1.134250 GCTGTTTTTGCAAAGGGGGAA 60.134 47.619 12.41 0.27 0.00 3.97
922 3114 0.467804 GCTGTTTTTGCAAAGGGGGA 59.532 50.000 12.41 0.00 0.00 4.81
923 3115 0.534877 GGCTGTTTTTGCAAAGGGGG 60.535 55.000 12.41 6.03 0.00 5.40
925 3117 2.035530 TTGGCTGTTTTTGCAAAGGG 57.964 45.000 12.41 5.37 0.00 3.95
939 3131 1.510480 GAGTTGCGACTGCTTTGGCT 61.510 55.000 12.53 0.00 43.34 4.75
1400 3621 0.250166 GGTAGCGGATTTGCGGGTAT 60.250 55.000 0.00 0.00 40.67 2.73
1587 3808 8.110860 ACAGACTGAAACAAGAAAGAAAGAAA 57.889 30.769 10.08 0.00 0.00 2.52
1592 3813 6.334989 TCGTACAGACTGAAACAAGAAAGAA 58.665 36.000 10.08 0.00 0.00 2.52
1593 3814 5.898174 TCGTACAGACTGAAACAAGAAAGA 58.102 37.500 10.08 0.00 0.00 2.52
1594 3815 6.771188 ATCGTACAGACTGAAACAAGAAAG 57.229 37.500 10.08 0.00 0.00 2.62
1595 3816 7.548196 AAATCGTACAGACTGAAACAAGAAA 57.452 32.000 10.08 0.00 0.00 2.52
1597 3818 7.548196 AAAAATCGTACAGACTGAAACAAGA 57.452 32.000 10.08 1.81 0.00 3.02
1740 4000 4.635765 ACGCATCAGCAACATTACTGTTAT 59.364 37.500 0.00 0.00 43.76 1.89
1746 4006 1.913403 GCAACGCATCAGCAACATTAC 59.087 47.619 0.00 0.00 42.27 1.89
1791 4051 7.518731 TTGGAAAATTTAATATGCTGAACGC 57.481 32.000 0.00 0.00 39.77 4.84
1807 4067 6.520272 TGTTCGTTGAATTCCATTGGAAAAT 58.480 32.000 21.52 13.58 45.41 1.82
1819 4079 3.067601 GGAAACCCACTGTTCGTTGAATT 59.932 43.478 0.00 0.00 35.67 2.17
1869 4129 5.008118 GTCTGCATCTTTAGCCAGGATAAAC 59.992 44.000 5.75 0.00 0.00 2.01
1873 4217 2.507058 TGTCTGCATCTTTAGCCAGGAT 59.493 45.455 0.00 0.00 0.00 3.24
1957 4301 7.880713 TGAGTATGGCTTATTGAACTTGTGTAA 59.119 33.333 0.00 0.00 0.00 2.41
1960 4304 6.741992 TGAGTATGGCTTATTGAACTTGTG 57.258 37.500 0.00 0.00 0.00 3.33
2013 4357 2.229784 GCACTGCTGCAAAGGATAAGTT 59.770 45.455 3.02 0.00 43.62 2.66
2034 4378 6.074005 GTGTAGAAAATGAAGAGCAGAAACG 58.926 40.000 0.00 0.00 0.00 3.60
2082 4428 6.699642 CCATTTCATAAACGGAACAACAGTTT 59.300 34.615 0.00 0.00 45.53 2.66
2098 4444 5.581126 GGCAACTCATTGTCCATTTCATA 57.419 39.130 0.00 0.00 38.17 2.15
2152 4500 1.468506 GGCCATTGGGTTCAACGGTT 61.469 55.000 4.53 0.00 38.39 4.44
2230 4582 6.239120 GGCATGATATGGACTAACAAAGCATT 60.239 38.462 0.00 0.00 0.00 3.56
2311 4663 1.335132 TAGATGGGGGTTCCGAGTGC 61.335 60.000 0.00 0.00 38.76 4.40
2312 4664 0.753262 CTAGATGGGGGTTCCGAGTG 59.247 60.000 0.00 0.00 38.76 3.51
2314 4666 1.759459 GCCTAGATGGGGGTTCCGAG 61.759 65.000 0.00 0.00 38.76 4.63
2315 4667 1.764854 GCCTAGATGGGGGTTCCGA 60.765 63.158 0.00 0.00 38.76 4.55
2317 4669 0.988678 AGTGCCTAGATGGGGGTTCC 60.989 60.000 0.00 0.00 36.00 3.62
2321 4676 0.695803 AAGGAGTGCCTAGATGGGGG 60.696 60.000 0.00 0.00 46.28 5.40
2345 4700 0.320374 CAGAAGGGTTGCTGGTACGA 59.680 55.000 0.00 0.00 0.00 3.43
2426 4800 2.355108 CCGATAATAGACAGGGGCATGG 60.355 54.545 0.00 0.00 0.00 3.66
2462 4836 4.635765 TGCCCATTTCAGAGAAAATAGTCG 59.364 41.667 0.00 0.00 0.00 4.18
2597 5131 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
2598 5132 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
2599 5133 9.289782 CAAAGACTTATATTTAGGAATGGAGGG 57.710 37.037 0.00 0.00 0.00 4.30
2600 5134 9.853177 ACAAAGACTTATATTTAGGAATGGAGG 57.147 33.333 0.00 0.00 0.00 4.30
2617 5151 8.772250 TCCATAATGGAATCTCTACAAAGACTT 58.228 33.333 0.00 0.00 45.00 3.01
2618 5152 8.324191 TCCATAATGGAATCTCTACAAAGACT 57.676 34.615 0.00 0.00 45.00 3.24
2633 5167 5.784906 TGCTCCATATGTAGTCCATAATGGA 59.215 40.000 1.24 0.00 45.98 3.41
2634 5168 6.053632 TGCTCCATATGTAGTCCATAATGG 57.946 41.667 1.24 0.00 39.43 3.16
2635 5169 6.939622 TCTGCTCCATATGTAGTCCATAATG 58.060 40.000 1.24 0.00 39.43 1.90
2636 5170 7.559335 TTCTGCTCCATATGTAGTCCATAAT 57.441 36.000 1.24 0.00 39.43 1.28
2637 5171 6.994421 TTCTGCTCCATATGTAGTCCATAA 57.006 37.500 1.24 0.00 39.43 1.90
2638 5172 6.725834 TCATTCTGCTCCATATGTAGTCCATA 59.274 38.462 1.24 0.00 40.27 2.74
2639 5173 5.545335 TCATTCTGCTCCATATGTAGTCCAT 59.455 40.000 1.24 0.00 37.58 3.41
2640 5174 4.901250 TCATTCTGCTCCATATGTAGTCCA 59.099 41.667 1.24 0.00 0.00 4.02
2641 5175 5.011533 ACTCATTCTGCTCCATATGTAGTCC 59.988 44.000 1.24 0.00 0.00 3.85
2642 5176 6.095432 ACTCATTCTGCTCCATATGTAGTC 57.905 41.667 1.24 0.00 0.00 2.59
2643 5177 7.603180 TTACTCATTCTGCTCCATATGTAGT 57.397 36.000 1.24 0.00 0.00 2.73
2644 5178 9.149225 GATTTACTCATTCTGCTCCATATGTAG 57.851 37.037 1.24 0.00 0.00 2.74
2645 5179 8.874156 AGATTTACTCATTCTGCTCCATATGTA 58.126 33.333 1.24 0.00 0.00 2.29
2646 5180 7.743749 AGATTTACTCATTCTGCTCCATATGT 58.256 34.615 1.24 0.00 0.00 2.29
2647 5181 9.149225 GTAGATTTACTCATTCTGCTCCATATG 57.851 37.037 0.00 0.00 0.00 1.78
2648 5182 8.874156 TGTAGATTTACTCATTCTGCTCCATAT 58.126 33.333 0.00 0.00 0.00 1.78
2649 5183 8.144478 GTGTAGATTTACTCATTCTGCTCCATA 58.856 37.037 0.00 0.00 0.00 2.74
2650 5184 6.989169 GTGTAGATTTACTCATTCTGCTCCAT 59.011 38.462 0.00 0.00 0.00 3.41
2651 5185 6.155221 AGTGTAGATTTACTCATTCTGCTCCA 59.845 38.462 0.00 0.00 0.00 3.86
2652 5186 6.578023 AGTGTAGATTTACTCATTCTGCTCC 58.422 40.000 0.00 0.00 0.00 4.70
2653 5187 7.488322 AGAGTGTAGATTTACTCATTCTGCTC 58.512 38.462 7.09 0.00 44.41 4.26
2654 5188 7.416964 AGAGTGTAGATTTACTCATTCTGCT 57.583 36.000 7.09 0.00 44.41 4.24
2655 5189 9.587772 TTTAGAGTGTAGATTTACTCATTCTGC 57.412 33.333 7.09 0.00 44.41 4.26
2660 5194 9.890629 TGCATTTTAGAGTGTAGATTTACTCAT 57.109 29.630 7.09 0.00 44.41 2.90
2661 5195 9.890629 ATGCATTTTAGAGTGTAGATTTACTCA 57.109 29.630 0.00 0.00 44.41 3.41
2666 5200 9.890629 TGTAGATGCATTTTAGAGTGTAGATTT 57.109 29.630 0.00 0.00 0.00 2.17
2669 5203 9.967346 GTATGTAGATGCATTTTAGAGTGTAGA 57.033 33.333 0.00 0.00 0.00 2.59
2670 5204 9.750125 TGTATGTAGATGCATTTTAGAGTGTAG 57.250 33.333 0.00 0.00 0.00 2.74
2672 5206 9.265901 GATGTATGTAGATGCATTTTAGAGTGT 57.734 33.333 0.00 0.00 35.26 3.55
2673 5207 8.715998 GGATGTATGTAGATGCATTTTAGAGTG 58.284 37.037 0.00 0.00 35.26 3.51
2674 5208 7.600375 CGGATGTATGTAGATGCATTTTAGAGT 59.400 37.037 0.00 0.00 35.26 3.24
2675 5209 7.600375 ACGGATGTATGTAGATGCATTTTAGAG 59.400 37.037 0.00 0.00 35.26 2.43
2676 5210 7.441836 ACGGATGTATGTAGATGCATTTTAGA 58.558 34.615 0.00 0.00 35.26 2.10
2677 5211 7.658179 ACGGATGTATGTAGATGCATTTTAG 57.342 36.000 0.00 1.10 35.26 1.85
2692 5226 5.330455 CTATGGAGCACATACGGATGTAT 57.670 43.478 14.23 5.02 44.82 2.29
2693 5227 4.783764 CTATGGAGCACATACGGATGTA 57.216 45.455 14.23 0.00 44.82 2.29
2706 5240 4.244425 TGTAGAGATTTCGCTATGGAGC 57.756 45.455 0.00 0.00 46.00 4.70
2707 5241 6.419413 GTCTTTGTAGAGATTTCGCTATGGAG 59.581 42.308 0.00 0.00 31.23 3.86
2708 5242 6.096987 AGTCTTTGTAGAGATTTCGCTATGGA 59.903 38.462 0.00 0.00 31.23 3.41
2709 5243 6.276847 AGTCTTTGTAGAGATTTCGCTATGG 58.723 40.000 0.00 0.00 31.23 2.74
2710 5244 7.763172 AAGTCTTTGTAGAGATTTCGCTATG 57.237 36.000 0.00 0.00 31.23 2.23
2725 5259 9.853177 CCCTCATTCCTAAATATAAGTCTTTGT 57.147 33.333 0.00 0.00 0.00 2.83
2728 5262 9.453830 ACTCCCTCATTCCTAAATATAAGTCTT 57.546 33.333 0.00 0.00 0.00 3.01
2731 5265 8.804204 CGTACTCCCTCATTCCTAAATATAAGT 58.196 37.037 0.00 0.00 0.00 2.24
2732 5266 8.804204 ACGTACTCCCTCATTCCTAAATATAAG 58.196 37.037 0.00 0.00 0.00 1.73
2733 5267 8.582437 CACGTACTCCCTCATTCCTAAATATAA 58.418 37.037 0.00 0.00 0.00 0.98
2734 5268 7.946219 TCACGTACTCCCTCATTCCTAAATATA 59.054 37.037 0.00 0.00 0.00 0.86
2735 5269 6.781014 TCACGTACTCCCTCATTCCTAAATAT 59.219 38.462 0.00 0.00 0.00 1.28
2736 5270 6.131264 TCACGTACTCCCTCATTCCTAAATA 58.869 40.000 0.00 0.00 0.00 1.40
2737 5271 4.960469 TCACGTACTCCCTCATTCCTAAAT 59.040 41.667 0.00 0.00 0.00 1.40
2738 5272 4.346730 TCACGTACTCCCTCATTCCTAAA 58.653 43.478 0.00 0.00 0.00 1.85
2739 5273 3.972133 TCACGTACTCCCTCATTCCTAA 58.028 45.455 0.00 0.00 0.00 2.69
2740 5274 3.657398 TCACGTACTCCCTCATTCCTA 57.343 47.619 0.00 0.00 0.00 2.94
2741 5275 2.526888 TCACGTACTCCCTCATTCCT 57.473 50.000 0.00 0.00 0.00 3.36
2742 5276 3.821421 ATTCACGTACTCCCTCATTCC 57.179 47.619 0.00 0.00 0.00 3.01
2743 5277 5.221461 ACCATATTCACGTACTCCCTCATTC 60.221 44.000 0.00 0.00 0.00 2.67
2744 5278 4.654262 ACCATATTCACGTACTCCCTCATT 59.346 41.667 0.00 0.00 0.00 2.57
2745 5279 4.223953 ACCATATTCACGTACTCCCTCAT 58.776 43.478 0.00 0.00 0.00 2.90
2746 5280 3.638860 ACCATATTCACGTACTCCCTCA 58.361 45.455 0.00 0.00 0.00 3.86
2747 5281 5.979288 ATACCATATTCACGTACTCCCTC 57.021 43.478 0.00 0.00 0.00 4.30
2748 5282 6.742559 AAATACCATATTCACGTACTCCCT 57.257 37.500 0.00 0.00 0.00 4.20
2749 5283 6.426025 GGAAAATACCATATTCACGTACTCCC 59.574 42.308 0.00 0.00 0.00 4.30
2750 5284 7.215085 AGGAAAATACCATATTCACGTACTCC 58.785 38.462 0.00 0.00 0.00 3.85
2751 5285 7.114529 CGAGGAAAATACCATATTCACGTACTC 59.885 40.741 0.00 0.00 0.00 2.59
2752 5286 6.921857 CGAGGAAAATACCATATTCACGTACT 59.078 38.462 0.00 0.00 0.00 2.73
2753 5287 6.145048 CCGAGGAAAATACCATATTCACGTAC 59.855 42.308 0.00 0.00 0.00 3.67
2754 5288 6.218019 CCGAGGAAAATACCATATTCACGTA 58.782 40.000 0.00 0.00 0.00 3.57
2755 5289 5.054477 CCGAGGAAAATACCATATTCACGT 58.946 41.667 0.00 0.00 0.00 4.49
2756 5290 4.451096 CCCGAGGAAAATACCATATTCACG 59.549 45.833 0.00 0.00 0.00 4.35
2801 5335 2.312741 TGATTCCCTTGGAGGCAAGAAT 59.687 45.455 0.00 0.00 32.73 2.40
3024 5559 4.431416 TGGAAGTGGTGTATGTGTTTCT 57.569 40.909 0.00 0.00 0.00 2.52
3039 5603 2.086869 CCGAGCATGAAACATGGAAGT 58.913 47.619 12.56 0.00 0.00 3.01
3040 5604 1.202222 GCCGAGCATGAAACATGGAAG 60.202 52.381 12.56 0.00 0.00 3.46
3041 5605 0.810648 GCCGAGCATGAAACATGGAA 59.189 50.000 12.56 0.00 0.00 3.53
3042 5606 0.322366 TGCCGAGCATGAAACATGGA 60.322 50.000 12.56 0.00 31.71 3.41
3043 5607 2.182496 TGCCGAGCATGAAACATGG 58.818 52.632 12.56 0.00 31.71 3.66
3059 5623 0.249868 TCTACATGGCAGGCGTATGC 60.250 55.000 0.00 0.00 45.74 3.14
3060 5624 1.788258 CTCTACATGGCAGGCGTATG 58.212 55.000 0.00 5.84 0.00 2.39
3061 5625 0.034059 GCTCTACATGGCAGGCGTAT 59.966 55.000 0.00 0.00 0.00 3.06
3062 5626 1.326951 TGCTCTACATGGCAGGCGTA 61.327 55.000 0.00 0.00 34.22 4.42
3063 5627 1.976132 ATGCTCTACATGGCAGGCGT 61.976 55.000 0.00 0.00 41.88 5.68
3064 5628 0.033920 TATGCTCTACATGGCAGGCG 59.966 55.000 0.00 0.00 41.88 5.52
3065 5629 2.486472 ATATGCTCTACATGGCAGGC 57.514 50.000 0.00 0.98 41.88 4.85
3126 6274 7.977853 AGAAATGCCATTACTGCAAGATTTAAG 59.022 33.333 0.00 0.00 42.92 1.85
3186 6334 0.380733 GTGCGCTAATTTAGGTGCCC 59.619 55.000 9.73 0.00 38.06 5.36
3235 6383 1.280133 TCCTTCCTTGCAGATGTCTGG 59.720 52.381 11.66 0.00 43.94 3.86
3286 6434 9.755064 AATTAACTCGATCGTTTTAAATGTGAG 57.245 29.630 15.94 2.74 0.00 3.51
3293 6441 8.767085 ACAAGTCAATTAACTCGATCGTTTTAA 58.233 29.630 15.94 17.99 0.00 1.52
3346 6526 8.480643 AGTATAATTTGTTGTAGTCACTCAGC 57.519 34.615 0.00 0.00 0.00 4.26
3476 6657 6.249192 TCTCTCTCTCTCTCACCAAACATAA 58.751 40.000 0.00 0.00 0.00 1.90
3478 6659 4.671831 TCTCTCTCTCTCTCACCAAACAT 58.328 43.478 0.00 0.00 0.00 2.71
3480 6661 4.331968 TCTCTCTCTCTCTCTCACCAAAC 58.668 47.826 0.00 0.00 0.00 2.93
3530 6795 3.304458 CGTACAAACTTTCAGAAAGCCCC 60.304 47.826 21.00 4.66 42.27 5.80
3556 6821 6.642131 GCAAAAACATCAGAATCTACTGCAAA 59.358 34.615 0.00 0.00 37.75 3.68
3557 6822 6.151691 GCAAAAACATCAGAATCTACTGCAA 58.848 36.000 0.00 0.00 37.75 4.08
3558 6823 5.241285 TGCAAAAACATCAGAATCTACTGCA 59.759 36.000 0.00 0.00 37.75 4.41
3559 6824 5.702865 TGCAAAAACATCAGAATCTACTGC 58.297 37.500 0.00 0.00 37.75 4.40
3560 6825 6.906659 ACTGCAAAAACATCAGAATCTACTG 58.093 36.000 0.00 0.00 39.02 2.74
3561 6826 8.097038 TCTACTGCAAAAACATCAGAATCTACT 58.903 33.333 0.00 0.00 0.00 2.57
3562 6827 8.256611 TCTACTGCAAAAACATCAGAATCTAC 57.743 34.615 0.00 0.00 0.00 2.59
3563 6828 9.453572 AATCTACTGCAAAAACATCAGAATCTA 57.546 29.630 0.00 0.00 0.00 1.98
3564 6829 7.934855 ATCTACTGCAAAAACATCAGAATCT 57.065 32.000 0.00 0.00 0.00 2.40
3565 6830 8.457261 AGAATCTACTGCAAAAACATCAGAATC 58.543 33.333 0.00 0.00 0.00 2.52
3566 6831 8.242053 CAGAATCTACTGCAAAAACATCAGAAT 58.758 33.333 0.00 0.00 0.00 2.40
3567 6832 7.445096 TCAGAATCTACTGCAAAAACATCAGAA 59.555 33.333 0.00 0.00 37.75 3.02
3568 6833 6.936335 TCAGAATCTACTGCAAAAACATCAGA 59.064 34.615 0.00 0.00 37.75 3.27
3569 6834 7.137490 TCAGAATCTACTGCAAAAACATCAG 57.863 36.000 0.00 0.00 37.75 2.90
3570 6835 7.175467 ACATCAGAATCTACTGCAAAAACATCA 59.825 33.333 0.00 0.00 37.75 3.07
3571 6836 7.533426 ACATCAGAATCTACTGCAAAAACATC 58.467 34.615 0.00 0.00 37.75 3.06
3572 6837 7.458409 ACATCAGAATCTACTGCAAAAACAT 57.542 32.000 0.00 0.00 37.75 2.71
3573 6838 6.882610 ACATCAGAATCTACTGCAAAAACA 57.117 33.333 0.00 0.00 37.75 2.83
3574 6839 7.862372 TCAAACATCAGAATCTACTGCAAAAAC 59.138 33.333 0.00 0.00 37.75 2.43
3575 6840 7.939782 TCAAACATCAGAATCTACTGCAAAAA 58.060 30.769 0.00 0.00 37.75 1.94
3576 6841 7.509141 TCAAACATCAGAATCTACTGCAAAA 57.491 32.000 0.00 0.00 37.75 2.44
3746 7012 2.189594 TGCTGACTGTTCCCATTCAG 57.810 50.000 5.88 5.88 46.01 3.02
3755 7021 6.488006 ACTTCTTGACATAATTGCTGACTGTT 59.512 34.615 0.00 0.00 0.00 3.16
3836 7102 1.585668 CTCGCTGAATGAACGTGCTAG 59.414 52.381 0.00 0.00 0.00 3.42
3908 7174 6.876789 TGTAAATTGTACAGGACATCAACGAT 59.123 34.615 0.00 0.00 38.07 3.73
3974 7240 1.409427 AGTAGCCACCATCTTACTCGC 59.591 52.381 0.00 0.00 0.00 5.03
3993 7259 6.876257 AGCTTGATCAAGTACTCCACTTAAAG 59.124 38.462 30.88 6.45 46.04 1.85
4000 7266 2.302733 TGCAGCTTGATCAAGTACTCCA 59.697 45.455 30.88 17.29 40.45 3.86
4129 7398 2.401766 GGTGCAATCTCCAGTGGCG 61.402 63.158 3.51 0.00 0.00 5.69
4174 7443 0.531532 CCAGCTTCGATACCCAGCAG 60.532 60.000 8.64 0.55 35.88 4.24
4300 7572 5.562890 GCTCACCAGTTCTACATTCCAAAAC 60.563 44.000 0.00 0.00 0.00 2.43
4380 7652 5.482006 TCATCAATGACAGTACAAGTGGAG 58.518 41.667 0.00 0.00 0.00 3.86
4399 7671 7.443879 GGGTTCTTCAGATAATCTTCCTTCATC 59.556 40.741 0.00 0.00 0.00 2.92
4400 7672 7.286313 GGGTTCTTCAGATAATCTTCCTTCAT 58.714 38.462 0.00 0.00 0.00 2.57
4546 7818 4.104261 AGGAAGGCCTTGTATGGTATAACC 59.896 45.833 26.25 13.09 43.90 2.85
4551 7823 1.211949 GCAGGAAGGCCTTGTATGGTA 59.788 52.381 26.25 0.00 43.90 3.25
4580 7852 2.180017 CCGATTTGCCTGCAGTGC 59.820 61.111 13.81 15.86 0.00 4.40
4581 7853 0.674581 TCTCCGATTTGCCTGCAGTG 60.675 55.000 13.81 5.37 0.00 3.66
4582 7854 0.392193 CTCTCCGATTTGCCTGCAGT 60.392 55.000 13.81 0.00 0.00 4.40
4583 7855 1.094073 CCTCTCCGATTTGCCTGCAG 61.094 60.000 6.78 6.78 0.00 4.41
4584 7856 1.078214 CCTCTCCGATTTGCCTGCA 60.078 57.895 0.00 0.00 0.00 4.41
4585 7857 1.092345 GTCCTCTCCGATTTGCCTGC 61.092 60.000 0.00 0.00 0.00 4.85
4636 7908 4.881850 TCAGCAGTATACTCATTCTGACGA 59.118 41.667 1.26 0.00 32.76 4.20
4637 7909 5.175090 TCAGCAGTATACTCATTCTGACG 57.825 43.478 1.26 0.00 32.76 4.35
4755 8027 1.305213 CACCCATCCAACCCAAGGG 60.305 63.158 2.91 2.91 45.20 3.95
4756 8028 0.178935 AACACCCATCCAACCCAAGG 60.179 55.000 0.00 0.00 0.00 3.61
4757 8029 1.715785 AAACACCCATCCAACCCAAG 58.284 50.000 0.00 0.00 0.00 3.61
4758 8030 2.171448 CAAAAACACCCATCCAACCCAA 59.829 45.455 0.00 0.00 0.00 4.12
4759 8031 1.765314 CAAAAACACCCATCCAACCCA 59.235 47.619 0.00 0.00 0.00 4.51
4760 8032 1.765904 ACAAAAACACCCATCCAACCC 59.234 47.619 0.00 0.00 0.00 4.11
4761 8033 3.202097 CAACAAAAACACCCATCCAACC 58.798 45.455 0.00 0.00 0.00 3.77
4762 8034 3.867857 ACAACAAAAACACCCATCCAAC 58.132 40.909 0.00 0.00 0.00 3.77
4828 8101 2.495669 AGCAGAGCCTCTGTTAGAGAAC 59.504 50.000 22.14 3.81 45.07 3.01
4842 8115 0.318441 TGGTGTACACTCAGCAGAGC 59.682 55.000 24.55 6.10 46.09 4.09
4860 8133 2.290367 TGAACTCTTCCAACGCAATGTG 59.710 45.455 0.00 0.00 0.00 3.21
4946 8219 6.282199 ACTCAATGTAGGGTACTGTTACAG 57.718 41.667 11.21 11.21 37.52 2.74
4975 8248 4.574828 GCTGAAACAGAAGTGGTGAGTTTA 59.425 41.667 2.81 0.00 33.04 2.01
5065 8338 1.396594 GAGGGAGGGAGAAAGGGGA 59.603 63.158 0.00 0.00 0.00 4.81
5120 8396 6.190587 TCAGGAGATTGACTGATTGAGACTA 58.809 40.000 0.00 0.00 38.71 2.59
5145 8441 1.185618 ACAGTAGAAGGTGCGGCTCA 61.186 55.000 0.00 0.00 0.00 4.26
5151 8447 0.391793 GAGGCCACAGTAGAAGGTGC 60.392 60.000 5.01 0.00 33.72 5.01
5159 8455 1.220749 GCGAATGGAGGCCACAGTA 59.779 57.895 5.01 0.00 35.80 2.74
5160 8456 2.045926 GCGAATGGAGGCCACAGT 60.046 61.111 5.01 1.95 35.80 3.55
5162 8458 2.046023 CAGCGAATGGAGGCCACA 60.046 61.111 5.01 3.49 35.80 4.17
5175 8471 4.988598 ACAAGTGACCCGGCAGCG 62.989 66.667 0.00 0.00 0.00 5.18
5181 8477 0.874390 CATGGACAACAAGTGACCCG 59.126 55.000 0.00 0.00 40.94 5.28
5207 8503 3.687125 TCTGTACGAGAGTTCTGGTGAT 58.313 45.455 7.01 0.00 46.40 3.06
5268 8564 6.904626 AGATAGAGTTTGCCAATATTGACCT 58.095 36.000 17.23 8.53 0.00 3.85
5298 8713 2.169561 GAGTTTGCCAACCCCTCAAAAA 59.830 45.455 0.00 0.00 32.70 1.94
5299 8714 1.760029 GAGTTTGCCAACCCCTCAAAA 59.240 47.619 0.00 0.00 32.70 2.44
5300 8715 1.063266 AGAGTTTGCCAACCCCTCAAA 60.063 47.619 0.00 0.00 32.70 2.69
5301 8716 0.555769 AGAGTTTGCCAACCCCTCAA 59.444 50.000 0.00 0.00 32.70 3.02
5302 8717 1.440618 TAGAGTTTGCCAACCCCTCA 58.559 50.000 0.00 0.00 32.70 3.86
5303 8718 2.239907 AGATAGAGTTTGCCAACCCCTC 59.760 50.000 0.00 0.00 32.70 4.30
5304 8719 2.025887 CAGATAGAGTTTGCCAACCCCT 60.026 50.000 0.00 0.00 32.70 4.79
5305 8720 2.290960 ACAGATAGAGTTTGCCAACCCC 60.291 50.000 0.00 0.00 32.70 4.95
5306 8721 3.073274 ACAGATAGAGTTTGCCAACCC 57.927 47.619 0.00 0.00 32.70 4.11
5307 8722 4.327680 AGAACAGATAGAGTTTGCCAACC 58.672 43.478 0.00 0.00 32.70 3.77
5308 8723 5.582665 CCTAGAACAGATAGAGTTTGCCAAC 59.417 44.000 0.00 0.00 0.00 3.77
5309 8724 5.734720 CCTAGAACAGATAGAGTTTGCCAA 58.265 41.667 0.00 0.00 0.00 4.52
5310 8725 4.383118 GCCTAGAACAGATAGAGTTTGCCA 60.383 45.833 0.00 0.00 0.00 4.92
5311 8726 4.123506 GCCTAGAACAGATAGAGTTTGCC 58.876 47.826 0.00 0.00 0.00 4.52
5312 8727 4.123506 GGCCTAGAACAGATAGAGTTTGC 58.876 47.826 0.00 0.00 0.00 3.68
5313 8728 4.142138 ACGGCCTAGAACAGATAGAGTTTG 60.142 45.833 0.00 0.00 0.00 2.93
5314 8729 4.024670 ACGGCCTAGAACAGATAGAGTTT 58.975 43.478 0.00 0.00 0.00 2.66
5315 8730 3.381908 CACGGCCTAGAACAGATAGAGTT 59.618 47.826 0.00 0.00 0.00 3.01
5316 8731 2.952978 CACGGCCTAGAACAGATAGAGT 59.047 50.000 0.00 0.00 0.00 3.24
5317 8732 3.215151 TCACGGCCTAGAACAGATAGAG 58.785 50.000 0.00 0.00 0.00 2.43
5318 8733 3.215151 CTCACGGCCTAGAACAGATAGA 58.785 50.000 0.00 0.00 0.00 1.98
5319 8734 2.287909 GCTCACGGCCTAGAACAGATAG 60.288 54.545 0.00 0.00 34.27 2.08
5320 8735 1.681793 GCTCACGGCCTAGAACAGATA 59.318 52.381 0.00 0.00 34.27 1.98
5321 8736 0.461961 GCTCACGGCCTAGAACAGAT 59.538 55.000 0.00 0.00 34.27 2.90
5322 8737 0.898326 TGCTCACGGCCTAGAACAGA 60.898 55.000 0.00 0.00 40.92 3.41
5323 8738 0.737715 GTGCTCACGGCCTAGAACAG 60.738 60.000 0.00 0.00 40.92 3.16
5324 8739 1.292223 GTGCTCACGGCCTAGAACA 59.708 57.895 0.00 0.00 40.92 3.18
5331 8746 1.080569 CAAAATGGTGCTCACGGCC 60.081 57.895 0.00 0.00 40.92 6.13
5344 8759 2.891882 CCGATTGGCCGGCAAAAT 59.108 55.556 30.85 26.03 43.25 1.82
5368 8806 2.200337 GGCCGGCCATATTGGGAAC 61.200 63.158 40.73 8.02 38.19 3.62
5369 8807 2.197324 GGCCGGCCATATTGGGAA 59.803 61.111 40.73 0.00 38.19 3.97
5370 8808 3.897122 GGGCCGGCCATATTGGGA 61.897 66.667 44.46 0.00 38.19 4.37
5371 8809 4.217210 TGGGCCGGCCATATTGGG 62.217 66.667 44.46 0.00 38.19 4.12
5372 8810 2.912025 GTGGGCCGGCCATATTGG 60.912 66.667 44.46 0.00 41.55 3.16
5373 8811 2.912025 GGTGGGCCGGCCATATTG 60.912 66.667 44.46 0.00 37.98 1.90
5459 8898 5.342259 CGGAGCAGAAAACGAAAATAAAAGG 59.658 40.000 0.00 0.00 0.00 3.11
5460 8899 5.912955 ACGGAGCAGAAAACGAAAATAAAAG 59.087 36.000 0.00 0.00 0.00 2.27
5882 9409 1.462283 CAATGTTCTGCCACTCACTCG 59.538 52.381 0.00 0.00 0.00 4.18
5885 9412 1.242076 AGCAATGTTCTGCCACTCAC 58.758 50.000 0.00 0.00 43.73 3.51
5888 9415 2.440409 CCTAAGCAATGTTCTGCCACT 58.560 47.619 0.00 0.00 43.73 4.00
5892 9419 0.457443 GGCCCTAAGCAATGTTCTGC 59.543 55.000 0.00 0.00 46.50 4.26
5899 9426 2.517980 TCCCAAATAGGCCCTAAGCAAT 59.482 45.455 0.00 0.00 46.50 3.56
5913 9440 2.036346 GTGAAGCAAAGCAGTCCCAAAT 59.964 45.455 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.