Multiple sequence alignment - TraesCS2B01G043900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G043900 chr2B 100.000 4957 0 0 1 4957 20738665 20743621 0.000000e+00 9154.0
1 TraesCS2B01G043900 chr2B 95.221 2741 105 16 1183 3915 19971186 19968464 0.000000e+00 4313.0
2 TraesCS2B01G043900 chr2B 84.779 565 64 11 1594 2141 21778799 21778240 9.380000e-152 547.0
3 TraesCS2B01G043900 chr2B 83.182 220 20 9 497 701 19973496 19973279 8.470000e-43 185.0
4 TraesCS2B01G043900 chr2B 85.792 183 17 7 731 904 227253307 227253125 8.470000e-43 185.0
5 TraesCS2B01G043900 chr2B 85.405 185 18 7 729 904 546628411 546628595 3.050000e-42 183.0
6 TraesCS2B01G043900 chr2B 83.439 157 16 6 1138 1286 19971561 19971407 2.410000e-28 137.0
7 TraesCS2B01G043900 chr2B 93.258 89 6 0 142 230 25966202 25966290 1.120000e-26 132.0
8 TraesCS2B01G043900 chr2B 89.091 110 3 2 1182 1291 19971271 19971171 1.450000e-25 128.0
9 TraesCS2B01G043900 chr2B 88.785 107 9 1 1183 1286 19971417 19971311 1.450000e-25 128.0
10 TraesCS2B01G043900 chr2B 98.529 68 1 0 1189 1256 19971321 19971254 2.420000e-23 121.0
11 TraesCS2B01G043900 chr2B 86.735 98 13 0 2979 3076 19388228 19388325 5.250000e-20 110.0
12 TraesCS2B01G043900 chr2B 81.897 116 19 2 3581 3695 21746547 21746433 4.080000e-16 97.1
13 TraesCS2B01G043900 chr2A 91.624 1743 108 14 2370 4091 14407479 14405754 0.000000e+00 2375.0
14 TraesCS2B01G043900 chr2A 89.064 951 90 6 1302 2246 14408475 14407533 0.000000e+00 1168.0
15 TraesCS2B01G043900 chr2A 86.751 551 41 14 4412 4957 14403868 14403345 7.150000e-163 584.0
16 TraesCS2B01G043900 chr2A 93.871 310 15 4 278 583 14410966 14410657 9.720000e-127 464.0
17 TraesCS2B01G043900 chr2A 92.500 280 9 4 913 1184 14408700 14408425 1.670000e-104 390.0
18 TraesCS2B01G043900 chr2A 93.548 93 4 2 53 144 14411055 14410964 2.410000e-28 137.0
19 TraesCS2B01G043900 chr2A 92.632 95 6 1 4092 4185 14405703 14405609 8.660000e-28 135.0
20 TraesCS2B01G043900 chr2A 82.051 117 17 4 3581 3695 14064717 14064831 4.080000e-16 97.1
21 TraesCS2B01G043900 chr2A 97.500 40 1 0 4204 4243 14405616 14405577 8.900000e-08 69.4
22 TraesCS2B01G043900 chr2A 96.875 32 1 0 4332 4363 14405522 14405491 2.000000e-03 54.7
23 TraesCS2B01G043900 chr6B 86.486 185 16 7 729 904 264165723 264165539 1.410000e-45 195.0
24 TraesCS2B01G043900 chr1D 86.486 185 16 6 729 904 105944142 105944326 1.410000e-45 195.0
25 TraesCS2B01G043900 chr3D 85.946 185 17 6 729 904 466962967 466963151 6.550000e-44 189.0
26 TraesCS2B01G043900 chr7D 85.405 185 18 7 729 904 183233106 183233290 3.050000e-42 183.0
27 TraesCS2B01G043900 chr7A 85.556 180 20 5 729 904 76982779 76982956 3.050000e-42 183.0
28 TraesCS2B01G043900 chr5B 85.405 185 18 6 729 904 508061720 508061904 3.050000e-42 183.0
29 TraesCS2B01G043900 chr5B 92.135 89 7 0 142 230 528505195 528505107 5.210000e-25 126.0
30 TraesCS2B01G043900 chr5B 97.059 34 1 0 4259 4292 659401943 659401976 1.930000e-04 58.4
31 TraesCS2B01G043900 chr6D 84.324 185 20 6 729 904 411471915 411471731 6.600000e-39 172.0
32 TraesCS2B01G043900 chr1B 92.632 95 5 1 140 234 422979362 422979270 8.660000e-28 135.0
33 TraesCS2B01G043900 chr1B 92.222 90 7 0 139 228 164832073 164832162 1.450000e-25 128.0
34 TraesCS2B01G043900 chr1B 90.426 94 7 2 135 228 95334191 95334282 6.740000e-24 122.0
35 TraesCS2B01G043900 chr4B 93.103 87 6 0 142 228 595701720 595701806 1.450000e-25 128.0
36 TraesCS2B01G043900 chr3B 92.222 90 7 0 138 227 803005860 803005949 1.450000e-25 128.0
37 TraesCS2B01G043900 chr3B 89.691 97 8 2 134 228 58087641 58087737 6.740000e-24 122.0
38 TraesCS2B01G043900 chr3A 93.103 87 6 0 141 227 19865462 19865548 1.450000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G043900 chr2B 20738665 20743621 4956 False 9154.000000 9154 100.000000 1 4957 1 chr2B.!!$F2 4956
1 TraesCS2B01G043900 chr2B 19968464 19973496 5032 True 835.333333 4313 89.707833 497 3915 6 chr2B.!!$R4 3418
2 TraesCS2B01G043900 chr2B 21778240 21778799 559 True 547.000000 547 84.779000 1594 2141 1 chr2B.!!$R2 547
3 TraesCS2B01G043900 chr2A 14403345 14411055 7710 True 597.455556 2375 92.707222 53 4957 9 chr2A.!!$R1 4904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 257 0.108585 GGACAACCAGTCTTGCAGGA 59.891 55.0 0.00 0.00 46.72 3.86 F
486 492 1.118356 ATTTTTGGGTCTTGGCCGCA 61.118 50.0 0.00 0.00 0.00 5.69 F
1571 5176 1.316706 GCTCTCCTCTACCTGTGCGT 61.317 60.0 0.00 0.00 0.00 5.24 F
2321 5973 0.532573 ACCAGTACGAGTGCTGATGG 59.467 55.0 20.17 9.17 44.51 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1544 5149 0.246635 GTAGAGGAGAGCGGCAAACA 59.753 55.0 1.45 0.0 0.00 2.83 R
2274 5926 0.108186 TCGCTGTGCTACCATCTTGG 60.108 55.0 0.00 0.0 45.02 3.61 R
3260 6913 0.317519 CCCCGTTGCGACAGAAAAAC 60.318 55.0 4.64 0.0 0.00 2.43 R
4260 7985 0.104934 ATCCGATCCCTACCCAGCTT 60.105 55.0 0.00 0.0 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.008933 CCCTCCGATCCGCCCATC 62.009 72.222 0.00 0.00 0.00 3.51
20 21 3.233980 CCTCCGATCCGCCCATCA 61.234 66.667 0.00 0.00 0.00 3.07
21 22 2.587247 CCTCCGATCCGCCCATCAT 61.587 63.158 0.00 0.00 0.00 2.45
22 23 1.079543 CTCCGATCCGCCCATCATC 60.080 63.158 0.00 0.00 0.00 2.92
23 24 1.533994 TCCGATCCGCCCATCATCT 60.534 57.895 0.00 0.00 0.00 2.90
24 25 1.079543 CCGATCCGCCCATCATCTC 60.080 63.158 0.00 0.00 0.00 2.75
25 26 1.539560 CCGATCCGCCCATCATCTCT 61.540 60.000 0.00 0.00 0.00 3.10
26 27 0.108898 CGATCCGCCCATCATCTCTC 60.109 60.000 0.00 0.00 0.00 3.20
27 28 0.248843 GATCCGCCCATCATCTCTCC 59.751 60.000 0.00 0.00 0.00 3.71
28 29 0.178909 ATCCGCCCATCATCTCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
29 30 1.117749 TCCGCCCATCATCTCTCCTG 61.118 60.000 0.00 0.00 0.00 3.86
30 31 1.117749 CCGCCCATCATCTCTCCTGA 61.118 60.000 0.00 0.00 0.00 3.86
31 32 0.317799 CGCCCATCATCTCTCCTGAG 59.682 60.000 0.00 0.00 41.51 3.35
42 43 3.956744 TCTCTCCTGAGAAGACGAATCA 58.043 45.455 0.00 0.00 45.42 2.57
43 44 4.336280 TCTCTCCTGAGAAGACGAATCAA 58.664 43.478 0.00 0.00 45.42 2.57
44 45 4.952957 TCTCTCCTGAGAAGACGAATCAAT 59.047 41.667 0.00 0.00 45.42 2.57
45 46 5.067153 TCTCTCCTGAGAAGACGAATCAATC 59.933 44.000 0.00 0.00 45.42 2.67
46 47 4.098654 TCTCCTGAGAAGACGAATCAATCC 59.901 45.833 0.00 0.00 33.91 3.01
47 48 3.119291 CCTGAGAAGACGAATCAATCCG 58.881 50.000 0.00 0.00 0.00 4.18
48 49 3.429547 CCTGAGAAGACGAATCAATCCGT 60.430 47.826 0.00 0.00 42.17 4.69
55 56 3.594603 ACGAATCAATCCGTCAACTCT 57.405 42.857 0.00 0.00 33.23 3.24
56 57 3.926616 ACGAATCAATCCGTCAACTCTT 58.073 40.909 0.00 0.00 33.23 2.85
57 58 3.679980 ACGAATCAATCCGTCAACTCTTG 59.320 43.478 0.00 0.00 33.23 3.02
131 133 7.176515 TGCCATAGTAACACAGATGTCATTTTT 59.823 33.333 0.00 0.00 38.45 1.94
132 134 7.485913 GCCATAGTAACACAGATGTCATTTTTG 59.514 37.037 0.00 0.00 38.45 2.44
146 148 7.681939 TGTCATTTTTGGACAGTATTACTCC 57.318 36.000 0.00 0.00 40.16 3.85
147 149 6.657541 TGTCATTTTTGGACAGTATTACTCCC 59.342 38.462 0.00 0.00 40.16 4.30
148 150 6.884836 GTCATTTTTGGACAGTATTACTCCCT 59.115 38.462 11.15 0.00 35.36 4.20
149 151 7.065923 GTCATTTTTGGACAGTATTACTCCCTC 59.934 40.741 11.15 0.87 35.36 4.30
150 152 5.431179 TTTTGGACAGTATTACTCCCTCC 57.569 43.478 11.15 8.27 0.00 4.30
151 153 2.662866 TGGACAGTATTACTCCCTCCG 58.337 52.381 11.15 0.00 0.00 4.63
152 154 2.024655 TGGACAGTATTACTCCCTCCGT 60.025 50.000 11.15 0.00 0.00 4.69
153 155 3.029570 GGACAGTATTACTCCCTCCGTT 58.970 50.000 0.00 0.00 0.00 4.44
154 156 3.450096 GGACAGTATTACTCCCTCCGTTT 59.550 47.826 0.00 0.00 0.00 3.60
155 157 4.441217 GGACAGTATTACTCCCTCCGTTTC 60.441 50.000 0.00 0.00 0.00 2.78
156 158 4.091549 ACAGTATTACTCCCTCCGTTTCA 58.908 43.478 0.00 0.00 0.00 2.69
157 159 4.529377 ACAGTATTACTCCCTCCGTTTCAA 59.471 41.667 0.00 0.00 0.00 2.69
158 160 5.012354 ACAGTATTACTCCCTCCGTTTCAAA 59.988 40.000 0.00 0.00 0.00 2.69
159 161 5.935789 CAGTATTACTCCCTCCGTTTCAAAA 59.064 40.000 0.00 0.00 0.00 2.44
160 162 6.598064 CAGTATTACTCCCTCCGTTTCAAAAT 59.402 38.462 0.00 0.00 0.00 1.82
161 163 7.767198 CAGTATTACTCCCTCCGTTTCAAAATA 59.233 37.037 0.00 0.00 0.00 1.40
162 164 7.985752 AGTATTACTCCCTCCGTTTCAAAATAG 59.014 37.037 0.00 0.00 0.00 1.73
163 165 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
164 166 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
165 167 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
166 168 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
167 169 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
168 170 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
169 171 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
170 172 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
171 173 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
172 174 5.949354 TCCGTTTCAAAATAGATGACCCAAT 59.051 36.000 0.00 0.00 0.00 3.16
173 175 6.435904 TCCGTTTCAAAATAGATGACCCAATT 59.564 34.615 0.00 0.00 0.00 2.32
174 176 7.039363 TCCGTTTCAAAATAGATGACCCAATTT 60.039 33.333 0.00 0.00 0.00 1.82
175 177 7.602265 CCGTTTCAAAATAGATGACCCAATTTT 59.398 33.333 0.00 0.00 33.07 1.82
176 178 9.632807 CGTTTCAAAATAGATGACCCAATTTTA 57.367 29.630 0.00 0.00 31.97 1.52
216 218 9.736023 ACAAAGTTGACTCATCTATTTTGAAAC 57.264 29.630 11.50 0.00 38.59 2.78
217 219 9.734620 CAAAGTTGACTCATCTATTTTGAAACA 57.265 29.630 2.23 0.00 38.59 2.83
218 220 9.956720 AAAGTTGACTCATCTATTTTGAAACAG 57.043 29.630 0.00 0.00 0.00 3.16
219 221 8.908786 AGTTGACTCATCTATTTTGAAACAGA 57.091 30.769 0.00 0.00 0.00 3.41
220 222 8.997323 AGTTGACTCATCTATTTTGAAACAGAG 58.003 33.333 0.00 0.00 0.00 3.35
221 223 7.912056 TGACTCATCTATTTTGAAACAGAGG 57.088 36.000 0.00 0.00 0.00 3.69
222 224 6.881065 TGACTCATCTATTTTGAAACAGAGGG 59.119 38.462 0.00 0.00 0.00 4.30
223 225 7.020827 ACTCATCTATTTTGAAACAGAGGGA 57.979 36.000 0.00 0.00 0.00 4.20
224 226 7.108847 ACTCATCTATTTTGAAACAGAGGGAG 58.891 38.462 11.51 11.51 32.70 4.30
225 227 7.020827 TCATCTATTTTGAAACAGAGGGAGT 57.979 36.000 0.00 0.00 0.00 3.85
226 228 8.146053 TCATCTATTTTGAAACAGAGGGAGTA 57.854 34.615 0.00 0.00 0.00 2.59
227 229 8.772250 TCATCTATTTTGAAACAGAGGGAGTAT 58.228 33.333 0.00 0.00 0.00 2.12
228 230 9.050601 CATCTATTTTGAAACAGAGGGAGTATC 57.949 37.037 0.00 0.00 0.00 2.24
229 231 8.146053 TCTATTTTGAAACAGAGGGAGTATCA 57.854 34.615 0.00 0.00 36.25 2.15
230 232 8.772250 TCTATTTTGAAACAGAGGGAGTATCAT 58.228 33.333 0.00 0.00 36.25 2.45
231 233 9.401058 CTATTTTGAAACAGAGGGAGTATCATT 57.599 33.333 0.00 0.00 36.25 2.57
232 234 8.655935 ATTTTGAAACAGAGGGAGTATCATTT 57.344 30.769 0.00 0.00 36.25 2.32
233 235 8.477419 TTTTGAAACAGAGGGAGTATCATTTT 57.523 30.769 0.00 0.00 36.25 1.82
234 236 9.581289 TTTTGAAACAGAGGGAGTATCATTTTA 57.419 29.630 0.00 0.00 36.25 1.52
235 237 8.792830 TTGAAACAGAGGGAGTATCATTTTAG 57.207 34.615 0.00 0.00 36.25 1.85
236 238 7.338710 TGAAACAGAGGGAGTATCATTTTAGG 58.661 38.462 0.00 0.00 36.25 2.69
237 239 5.896073 ACAGAGGGAGTATCATTTTAGGG 57.104 43.478 0.00 0.00 36.25 3.53
238 240 5.538877 ACAGAGGGAGTATCATTTTAGGGA 58.461 41.667 0.00 0.00 36.25 4.20
239 241 5.367060 ACAGAGGGAGTATCATTTTAGGGAC 59.633 44.000 0.00 0.00 36.25 4.46
240 242 5.366768 CAGAGGGAGTATCATTTTAGGGACA 59.633 44.000 0.00 0.00 36.25 4.02
241 243 5.970640 AGAGGGAGTATCATTTTAGGGACAA 59.029 40.000 0.00 0.00 36.25 3.18
242 244 6.002653 AGGGAGTATCATTTTAGGGACAAC 57.997 41.667 0.00 0.00 36.25 3.32
243 245 5.104067 AGGGAGTATCATTTTAGGGACAACC 60.104 44.000 0.00 0.00 36.25 3.77
244 246 5.339695 GGGAGTATCATTTTAGGGACAACCA 60.340 44.000 0.00 0.00 38.47 3.67
245 247 5.823045 GGAGTATCATTTTAGGGACAACCAG 59.177 44.000 0.00 0.00 38.47 4.00
246 248 6.388619 AGTATCATTTTAGGGACAACCAGT 57.611 37.500 0.00 0.00 43.89 4.00
247 249 6.415573 AGTATCATTTTAGGGACAACCAGTC 58.584 40.000 0.00 0.00 46.83 3.51
248 250 4.993705 TCATTTTAGGGACAACCAGTCT 57.006 40.909 0.00 0.00 46.72 3.24
249 251 5.319043 TCATTTTAGGGACAACCAGTCTT 57.681 39.130 0.00 0.00 46.72 3.01
250 252 5.070001 TCATTTTAGGGACAACCAGTCTTG 58.930 41.667 0.00 0.00 46.72 3.02
251 253 2.561478 TTAGGGACAACCAGTCTTGC 57.439 50.000 0.00 0.00 46.72 4.01
252 254 1.429930 TAGGGACAACCAGTCTTGCA 58.570 50.000 0.00 0.00 46.72 4.08
253 255 0.109342 AGGGACAACCAGTCTTGCAG 59.891 55.000 0.00 0.00 46.72 4.41
254 256 0.890996 GGGACAACCAGTCTTGCAGG 60.891 60.000 0.00 0.00 46.72 4.85
255 257 0.108585 GGACAACCAGTCTTGCAGGA 59.891 55.000 0.00 0.00 46.72 3.86
256 258 1.271597 GGACAACCAGTCTTGCAGGAT 60.272 52.381 0.30 0.00 46.72 3.24
257 259 2.079925 GACAACCAGTCTTGCAGGATC 58.920 52.381 0.30 0.00 44.09 3.36
258 260 1.701847 ACAACCAGTCTTGCAGGATCT 59.298 47.619 0.30 0.00 0.00 2.75
259 261 2.906389 ACAACCAGTCTTGCAGGATCTA 59.094 45.455 0.30 0.00 0.00 1.98
260 262 3.521126 ACAACCAGTCTTGCAGGATCTAT 59.479 43.478 0.30 0.00 0.00 1.98
261 263 4.018960 ACAACCAGTCTTGCAGGATCTATT 60.019 41.667 0.30 0.00 0.00 1.73
262 264 4.851639 ACCAGTCTTGCAGGATCTATTT 57.148 40.909 0.30 0.00 0.00 1.40
263 265 5.184892 ACCAGTCTTGCAGGATCTATTTT 57.815 39.130 0.30 0.00 0.00 1.82
264 266 6.313519 ACCAGTCTTGCAGGATCTATTTTA 57.686 37.500 0.30 0.00 0.00 1.52
265 267 6.721318 ACCAGTCTTGCAGGATCTATTTTAA 58.279 36.000 0.30 0.00 0.00 1.52
266 268 7.175104 ACCAGTCTTGCAGGATCTATTTTAAA 58.825 34.615 0.30 0.00 0.00 1.52
267 269 7.669722 ACCAGTCTTGCAGGATCTATTTTAAAA 59.330 33.333 0.30 2.51 0.00 1.52
268 270 8.689972 CCAGTCTTGCAGGATCTATTTTAAAAT 58.310 33.333 17.18 17.18 0.00 1.82
300 302 3.139397 ACCATTTTAGGGACCAGTGTTGA 59.861 43.478 0.00 0.00 0.00 3.18
325 327 5.700402 ACCAGTCTTGCAGGAAATACTAT 57.300 39.130 0.00 0.00 0.00 2.12
326 328 6.067217 ACCAGTCTTGCAGGAAATACTATT 57.933 37.500 0.00 0.00 0.00 1.73
331 334 6.989169 AGTCTTGCAGGAAATACTATTGCTAG 59.011 38.462 0.00 0.00 38.41 3.42
339 342 5.467063 GGAAATACTATTGCTAGTGCTGGTC 59.533 44.000 0.00 0.00 38.65 4.02
340 343 2.586258 ACTATTGCTAGTGCTGGTCG 57.414 50.000 0.00 0.00 36.81 4.79
344 347 1.868987 TTGCTAGTGCTGGTCGCGTA 61.869 55.000 5.77 0.00 43.27 4.42
403 409 6.887013 AGAGAGAATGAGCACACATAATCTT 58.113 36.000 0.00 0.00 30.64 2.40
446 452 5.389859 TTTTCGTTCCTCCGTACATTCTA 57.610 39.130 0.00 0.00 0.00 2.10
461 467 3.327172 ACATTCTATCCTCCCAGATGCTG 59.673 47.826 0.00 0.00 0.00 4.41
470 476 3.614092 CTCCCAGATGCTGTACACATTT 58.386 45.455 10.83 4.69 0.00 2.32
486 492 1.118356 ATTTTTGGGTCTTGGCCGCA 61.118 50.000 0.00 0.00 0.00 5.69
517 523 3.132289 CCGACCCATAGTAGTGTGTCAAT 59.868 47.826 0.00 0.00 0.00 2.57
525 531 7.361201 CCCATAGTAGTGTGTCAATTCAAACTG 60.361 40.741 1.14 0.00 36.66 3.16
607 2380 4.531339 AGTACTACTGTTCTTCTTTCCCCC 59.469 45.833 0.00 0.00 0.00 5.40
651 2453 4.020543 ACGAGAGAGCTCAACTATTTCCT 58.979 43.478 17.77 0.00 41.36 3.36
689 2491 6.238869 GGATCACAGGAAAGATTTGATAAGGC 60.239 42.308 0.00 0.00 0.00 4.35
714 2531 3.898123 ACATGGGCAGATAAGAGACGTAT 59.102 43.478 0.00 0.00 0.00 3.06
746 2563 5.688348 CGATCTCCGTCTTTTAAAGAGTG 57.312 43.478 7.74 4.00 38.41 3.51
748 2565 6.320171 CGATCTCCGTCTTTTAAAGAGTGTA 58.680 40.000 7.74 0.00 38.41 2.90
753 2570 6.218746 TCCGTCTTTTAAAGAGTGTACTTCC 58.781 40.000 7.74 0.00 38.41 3.46
754 2571 5.987347 CCGTCTTTTAAAGAGTGTACTTCCA 59.013 40.000 7.74 0.00 38.41 3.53
756 2573 7.172703 CCGTCTTTTAAAGAGTGTACTTCCAAT 59.827 37.037 7.74 0.00 38.41 3.16
795 3892 9.751542 TCAAATGTTTTTATGTTTGACCGTATT 57.248 25.926 0.00 0.00 36.11 1.89
825 3922 7.628769 AATAATACATCGCATTATGCCATGA 57.371 32.000 26.53 12.73 43.24 3.07
826 3923 5.963176 AATACATCGCATTATGCCATGAA 57.037 34.783 26.53 5.39 43.24 2.57
828 3925 4.859304 ACATCGCATTATGCCATGAAAT 57.141 36.364 26.53 6.24 43.24 2.17
829 3926 5.204409 ACATCGCATTATGCCATGAAATT 57.796 34.783 26.53 5.91 43.24 1.82
830 3927 6.330004 ACATCGCATTATGCCATGAAATTA 57.670 33.333 26.53 0.00 43.24 1.40
831 3928 6.384224 ACATCGCATTATGCCATGAAATTAG 58.616 36.000 26.53 3.65 43.24 1.73
832 3929 6.016024 ACATCGCATTATGCCATGAAATTAGT 60.016 34.615 26.53 4.28 43.24 2.24
833 3930 7.174772 ACATCGCATTATGCCATGAAATTAGTA 59.825 33.333 26.53 0.00 43.24 1.82
834 3931 7.132694 TCGCATTATGCCATGAAATTAGTAG 57.867 36.000 11.90 0.00 41.12 2.57
835 3932 6.710295 TCGCATTATGCCATGAAATTAGTAGT 59.290 34.615 11.90 0.00 41.12 2.73
836 3933 7.875554 TCGCATTATGCCATGAAATTAGTAGTA 59.124 33.333 11.90 0.00 41.12 1.82
838 3935 8.783093 GCATTATGCCATGAAATTAGTAGTACA 58.217 33.333 5.80 0.00 37.42 2.90
879 3976 9.625747 TTCATCATATAGCTATTTGGTTTCACA 57.374 29.630 19.97 3.85 0.00 3.58
880 3977 9.625747 TCATCATATAGCTATTTGGTTTCACAA 57.374 29.630 19.97 3.25 0.00 3.33
886 3983 8.761575 ATAGCTATTTGGTTTCACAAACATTG 57.238 30.769 0.00 0.00 42.51 2.82
887 3984 6.815089 AGCTATTTGGTTTCACAAACATTGA 58.185 32.000 1.78 0.00 42.51 2.57
888 3985 7.444299 AGCTATTTGGTTTCACAAACATTGAT 58.556 30.769 1.78 0.00 42.51 2.57
890 3987 9.369904 GCTATTTGGTTTCACAAACATTGATAT 57.630 29.630 1.78 0.00 42.51 1.63
899 3996 9.755804 TTTCACAAACATTGATATAGTTTTGCA 57.244 25.926 0.00 0.00 33.54 4.08
901 3998 8.355913 TCACAAACATTGATATAGTTTTGCACA 58.644 29.630 0.00 0.00 33.54 4.57
902 3999 8.976471 CACAAACATTGATATAGTTTTGCACAA 58.024 29.630 0.00 0.00 33.54 3.33
903 4000 9.539825 ACAAACATTGATATAGTTTTGCACAAA 57.460 25.926 0.00 0.00 33.54 2.83
933 4052 5.881447 AGTACGTATCATGACAGTTGTCTC 58.119 41.667 12.97 0.00 44.99 3.36
934 4053 4.783764 ACGTATCATGACAGTTGTCTCA 57.216 40.909 12.97 0.00 44.99 3.27
1019 4143 3.302347 GACTGTCAGTGGCCCCGAG 62.302 68.421 11.04 0.00 0.00 4.63
1048 4173 2.982130 CCCAGTAAGTGCTCGCCT 59.018 61.111 0.00 0.00 0.00 5.52
1087 4229 3.878519 CGTCTCCTCCTCGCCGTC 61.879 72.222 0.00 0.00 0.00 4.79
1089 4231 2.438614 TCTCCTCCTCGCCGTCTG 60.439 66.667 0.00 0.00 0.00 3.51
1090 4232 4.200283 CTCCTCCTCGCCGTCTGC 62.200 72.222 0.00 0.00 0.00 4.26
1179 4784 4.704833 GGCCTTGTGCGCCAGAGA 62.705 66.667 4.18 0.00 46.27 3.10
1180 4785 3.123620 GCCTTGTGCGCCAGAGAG 61.124 66.667 4.18 0.00 0.00 3.20
1181 4786 3.123620 CCTTGTGCGCCAGAGAGC 61.124 66.667 4.18 0.00 39.59 4.09
1190 4795 4.838486 CCAGAGAGCGACGGCGAC 62.838 72.222 18.90 7.70 46.35 5.19
1220 4825 3.119096 GGCTTCGAAGGCGTGGAC 61.119 66.667 32.37 11.55 41.93 4.02
1221 4826 3.479269 GCTTCGAAGGCGTGGACG 61.479 66.667 25.77 0.00 43.27 4.79
1222 4827 2.257371 CTTCGAAGGCGTGGACGA 59.743 61.111 17.70 0.00 43.02 4.20
1223 4828 1.801913 CTTCGAAGGCGTGGACGAG 60.802 63.158 17.70 0.00 43.02 4.18
1224 4829 3.277211 TTCGAAGGCGTGGACGAGG 62.277 63.158 2.73 0.00 43.02 4.63
1225 4830 4.796231 CGAAGGCGTGGACGAGGG 62.796 72.222 2.73 0.00 43.02 4.30
1503 5108 2.685380 CGTGCCCTTCCTCCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
1542 5147 3.751246 CGTCCCTACAACGGCGGA 61.751 66.667 13.24 0.00 36.51 5.54
1544 5149 2.283388 TCCCTACAACGGCGGACT 60.283 61.111 13.24 0.00 0.00 3.85
1571 5176 1.316706 GCTCTCCTCTACCTGTGCGT 61.317 60.000 0.00 0.00 0.00 5.24
1963 5583 1.504221 GGTATACTCCCCTCCACCTCT 59.496 57.143 2.25 0.00 0.00 3.69
1969 5589 1.918957 CTCCCCTCCACCTCTTGAAAT 59.081 52.381 0.00 0.00 0.00 2.17
2101 5721 2.618816 GCCAACACCTCTGATGGATTCA 60.619 50.000 1.43 0.00 41.86 2.57
2103 5723 4.081406 CCAACACCTCTGATGGATTCAAA 58.919 43.478 0.00 0.00 41.86 2.69
2212 5842 4.587684 TCAACCTTTTCTACTCCGAGTCTT 59.412 41.667 3.74 0.00 0.00 3.01
2213 5843 5.070047 TCAACCTTTTCTACTCCGAGTCTTT 59.930 40.000 3.74 0.00 0.00 2.52
2214 5844 5.548181 ACCTTTTCTACTCCGAGTCTTTT 57.452 39.130 3.74 0.00 0.00 2.27
2282 5934 9.874205 TTGATTTATTTTTCTTAGCCAAGATGG 57.126 29.630 0.00 0.00 40.47 3.51
2283 5935 9.034800 TGATTTATTTTTCTTAGCCAAGATGGT 57.965 29.630 0.00 0.00 40.47 3.55
2286 5938 5.897377 TTTTTCTTAGCCAAGATGGTAGC 57.103 39.130 0.00 0.00 40.47 3.58
2309 5961 2.668457 CAGCGAATGTCTTGACCAGTAC 59.332 50.000 0.00 0.00 0.00 2.73
2321 5973 0.532573 ACCAGTACGAGTGCTGATGG 59.467 55.000 20.17 9.17 44.51 3.51
2414 6066 7.651808 TCAAAAGATTGAGATCAACCTGTTTC 58.348 34.615 0.00 0.00 40.59 2.78
2715 6368 6.033619 GCTGTCTGAAACTATGTACGTACTTG 59.966 42.308 25.12 16.71 0.00 3.16
2877 6530 8.316046 CGATGAAAATTACTGCAAAGCTTATTG 58.684 33.333 0.00 0.00 0.00 1.90
2879 6532 8.519492 TGAAAATTACTGCAAAGCTTATTGAC 57.481 30.769 0.00 0.00 31.84 3.18
2909 6562 4.943705 TGTCTTGAATTAGATGGGCAGAAC 59.056 41.667 0.00 0.00 0.00 3.01
3260 6913 4.498345 GCTCTTCTTGTACGATACCTGGAG 60.498 50.000 0.00 0.00 0.00 3.86
3470 7123 1.821332 CGGAGGATGCCTTTCCAGC 60.821 63.158 0.00 0.00 38.32 4.85
3530 7183 6.129874 TCAGTACATACAGAGCTACCTTGAT 58.870 40.000 0.00 0.00 0.00 2.57
3668 7330 1.411246 CGTCGGGAGATTGTGGGATTA 59.589 52.381 0.00 0.00 43.27 1.75
3705 7367 6.541111 ACGTGAACTTCTTACAGGAAAATC 57.459 37.500 0.00 0.00 0.00 2.17
3760 7422 6.939163 GCCAGATCTGAGAAACCAATGTATAT 59.061 38.462 24.62 0.00 0.00 0.86
3853 7515 0.391597 CCACACTTGTACAGGGTCGT 59.608 55.000 10.04 0.84 36.80 4.34
3854 7516 1.202604 CCACACTTGTACAGGGTCGTT 60.203 52.381 10.04 0.00 36.80 3.85
3895 7567 8.043710 ACATTAGCATTAGTAGAGAGCAGTTTT 58.956 33.333 0.00 0.00 0.00 2.43
4020 7692 7.386848 GGTGTATAGTGTTTGTTCAGTGTATGT 59.613 37.037 0.00 0.00 0.00 2.29
4027 7699 9.555727 AGTGTTTGTTCAGTGTATGTTTATACT 57.444 29.630 0.00 0.00 39.90 2.12
4028 7700 9.594038 GTGTTTGTTCAGTGTATGTTTATACTG 57.406 33.333 0.00 0.00 44.54 2.74
4063 7735 6.434596 CAATGTTTTGTTCGTCTTCCATGTA 58.565 36.000 0.00 0.00 0.00 2.29
4078 7750 4.886163 TCCATGTACAGTCTTACCCCATA 58.114 43.478 0.33 0.00 0.00 2.74
4082 7754 7.180229 TCCATGTACAGTCTTACCCCATATATG 59.820 40.741 5.68 5.68 0.00 1.78
4085 7757 7.070629 TGTACAGTCTTACCCCATATATGTGA 58.929 38.462 11.73 0.00 0.00 3.58
4086 7758 6.420913 ACAGTCTTACCCCATATATGTGAC 57.579 41.667 11.73 9.12 0.00 3.67
4087 7759 5.307196 ACAGTCTTACCCCATATATGTGACC 59.693 44.000 11.73 0.00 0.00 4.02
4088 7760 5.306937 CAGTCTTACCCCATATATGTGACCA 59.693 44.000 11.73 0.00 0.00 4.02
4089 7761 5.908831 AGTCTTACCCCATATATGTGACCAA 59.091 40.000 11.73 0.00 0.00 3.67
4090 7762 6.043243 AGTCTTACCCCATATATGTGACCAAG 59.957 42.308 11.73 8.04 0.00 3.61
4121 7845 8.589701 TTCTTTGTCTTTCTTCTTTTTACCCT 57.410 30.769 0.00 0.00 0.00 4.34
4160 7885 3.467374 TTCCAAACCAGCCAATTTCAC 57.533 42.857 0.00 0.00 0.00 3.18
4161 7886 1.339610 TCCAAACCAGCCAATTTCACG 59.660 47.619 0.00 0.00 0.00 4.35
4170 7895 4.386652 CCAGCCAATTTCACGAAAATCAAG 59.613 41.667 0.00 0.00 36.54 3.02
4172 7897 3.989817 GCCAATTTCACGAAAATCAAGCT 59.010 39.130 0.00 0.00 36.54 3.74
4177 7902 7.329226 CCAATTTCACGAAAATCAAGCTGTATT 59.671 33.333 0.00 0.00 36.54 1.89
4178 7903 9.340695 CAATTTCACGAAAATCAAGCTGTATTA 57.659 29.630 0.00 0.00 36.54 0.98
4179 7904 8.895932 ATTTCACGAAAATCAAGCTGTATTAC 57.104 30.769 0.00 0.00 31.78 1.89
4180 7905 7.428282 TTCACGAAAATCAAGCTGTATTACA 57.572 32.000 0.00 0.00 0.00 2.41
4181 7906 7.428282 TCACGAAAATCAAGCTGTATTACAA 57.572 32.000 0.00 0.00 0.00 2.41
4182 7907 7.518161 TCACGAAAATCAAGCTGTATTACAAG 58.482 34.615 0.00 0.00 0.00 3.16
4183 7908 7.172532 TCACGAAAATCAAGCTGTATTACAAGT 59.827 33.333 0.00 0.00 0.00 3.16
4184 7909 7.269084 CACGAAAATCAAGCTGTATTACAAGTG 59.731 37.037 0.00 0.00 0.00 3.16
4185 7910 6.249260 CGAAAATCAAGCTGTATTACAAGTGC 59.751 38.462 0.00 0.00 0.00 4.40
4186 7911 6.573664 AAATCAAGCTGTATTACAAGTGCA 57.426 33.333 8.65 0.00 0.00 4.57
4187 7912 6.764308 AATCAAGCTGTATTACAAGTGCAT 57.236 33.333 8.65 0.00 0.00 3.96
4188 7913 6.764308 ATCAAGCTGTATTACAAGTGCATT 57.236 33.333 8.65 0.00 0.00 3.56
4189 7914 6.573664 TCAAGCTGTATTACAAGTGCATTT 57.426 33.333 8.65 0.00 0.00 2.32
4190 7915 6.980593 TCAAGCTGTATTACAAGTGCATTTT 58.019 32.000 8.65 0.00 0.00 1.82
4191 7916 7.432869 TCAAGCTGTATTACAAGTGCATTTTT 58.567 30.769 8.65 0.00 0.00 1.94
4192 7917 8.572185 TCAAGCTGTATTACAAGTGCATTTTTA 58.428 29.630 8.65 0.00 0.00 1.52
4193 7918 9.190858 CAAGCTGTATTACAAGTGCATTTTTAA 57.809 29.630 3.42 3.42 0.00 1.52
4194 7919 9.927668 AAGCTGTATTACAAGTGCATTTTTAAT 57.072 25.926 15.10 15.10 0.00 1.40
4243 7968 9.829507 ACAGAGATGGAGTAGAATCAAAATAAG 57.170 33.333 0.00 0.00 0.00 1.73
4246 7971 8.879342 AGATGGAGTAGAATCAAAATAAGACG 57.121 34.615 0.00 0.00 0.00 4.18
4247 7972 7.928706 AGATGGAGTAGAATCAAAATAAGACGG 59.071 37.037 0.00 0.00 0.00 4.79
4248 7973 6.346096 TGGAGTAGAATCAAAATAAGACGGG 58.654 40.000 0.00 0.00 0.00 5.28
4249 7974 6.155565 TGGAGTAGAATCAAAATAAGACGGGA 59.844 38.462 0.00 0.00 0.00 5.14
4252 7977 8.302515 AGTAGAATCAAAATAAGACGGGACTA 57.697 34.615 0.00 0.00 0.00 2.59
4253 7978 8.414778 AGTAGAATCAAAATAAGACGGGACTAG 58.585 37.037 0.00 0.00 0.00 2.57
4255 7980 4.133013 TCAAAATAAGACGGGACTAGGC 57.867 45.455 0.00 0.00 0.00 3.93
4256 7981 3.118519 TCAAAATAAGACGGGACTAGGCC 60.119 47.826 5.86 5.86 0.00 5.19
4257 7982 1.421480 AATAAGACGGGACTAGGCCC 58.579 55.000 25.68 25.68 45.10 5.80
4264 7989 4.058434 GGACTAGGCCCAGAAGCT 57.942 61.111 1.81 0.00 0.00 3.74
4265 7990 1.524482 GGACTAGGCCCAGAAGCTG 59.476 63.158 1.81 0.00 0.00 4.24
4276 8001 0.390860 CAGAAGCTGGGTAGGGATCG 59.609 60.000 0.00 0.00 0.00 3.69
4277 8002 0.760945 AGAAGCTGGGTAGGGATCGG 60.761 60.000 0.00 0.00 0.00 4.18
4280 8005 0.104934 AGCTGGGTAGGGATCGGATT 60.105 55.000 0.00 0.00 0.00 3.01
4281 8006 0.765510 GCTGGGTAGGGATCGGATTT 59.234 55.000 0.00 0.00 0.00 2.17
4282 8007 1.143073 GCTGGGTAGGGATCGGATTTT 59.857 52.381 0.00 0.00 0.00 1.82
4283 8008 2.851195 CTGGGTAGGGATCGGATTTTG 58.149 52.381 0.00 0.00 0.00 2.44
4284 8009 1.493022 TGGGTAGGGATCGGATTTTGG 59.507 52.381 0.00 0.00 0.00 3.28
4286 8011 1.772453 GGTAGGGATCGGATTTTGGGA 59.228 52.381 0.00 0.00 0.00 4.37
4289 8014 2.205342 AGGGATCGGATTTTGGGAGAA 58.795 47.619 0.00 0.00 0.00 2.87
4291 8016 3.149981 GGGATCGGATTTTGGGAGAATC 58.850 50.000 0.00 0.00 33.71 2.52
4327 8052 2.969821 AAAACTGGGCCTACATGACA 57.030 45.000 4.53 0.00 0.00 3.58
4328 8053 2.200373 AAACTGGGCCTACATGACAC 57.800 50.000 4.53 0.00 0.00 3.67
4329 8054 0.328258 AACTGGGCCTACATGACACC 59.672 55.000 4.53 0.00 0.00 4.16
4330 8055 1.224592 CTGGGCCTACATGACACCC 59.775 63.158 4.53 5.28 41.24 4.61
4334 8059 0.394352 GGCCTACATGACACCCCAAG 60.394 60.000 0.00 0.00 0.00 3.61
4363 8088 1.656652 ATCATCTTCCGCGGACTTTG 58.343 50.000 31.19 23.83 0.00 2.77
4364 8089 0.391130 TCATCTTCCGCGGACTTTGG 60.391 55.000 31.19 16.67 0.00 3.28
4365 8090 1.078426 ATCTTCCGCGGACTTTGGG 60.078 57.895 31.19 13.62 0.00 4.12
4366 8091 3.431725 CTTCCGCGGACTTTGGGC 61.432 66.667 31.19 0.00 0.00 5.36
4369 9674 4.038080 CCGCGGACTTTGGGCAAC 62.038 66.667 24.07 0.00 0.00 4.17
4377 9682 1.001048 GACTTTGGGCAACGGTTTACC 60.001 52.381 0.00 0.00 37.60 2.85
4408 9715 5.518848 AAAAGTCATCAGCACAATCACAA 57.481 34.783 0.00 0.00 0.00 3.33
4409 9716 4.761235 AAGTCATCAGCACAATCACAAG 57.239 40.909 0.00 0.00 0.00 3.16
4410 9717 3.748083 AGTCATCAGCACAATCACAAGT 58.252 40.909 0.00 0.00 0.00 3.16
4411 9718 3.501062 AGTCATCAGCACAATCACAAGTG 59.499 43.478 0.00 0.00 38.74 3.16
4424 9731 1.065600 CAAGTGCACAACGGTTGGG 59.934 57.895 23.51 21.19 37.05 4.12
4456 9763 3.619038 GCTAGCGTAAGAGACAGCAAATT 59.381 43.478 0.00 0.00 43.02 1.82
4458 9765 3.931578 AGCGTAAGAGACAGCAAATTCT 58.068 40.909 0.00 0.00 43.02 2.40
4462 9769 5.120208 GCGTAAGAGACAGCAAATTCTACAA 59.880 40.000 0.00 0.00 43.02 2.41
4472 9779 8.798859 ACAGCAAATTCTACAAGATGATTACT 57.201 30.769 0.00 0.00 0.00 2.24
4475 9782 9.624373 AGCAAATTCTACAAGATGATTACTGAT 57.376 29.630 0.00 0.00 0.00 2.90
4491 9798 4.096732 ACTGATTTAATGCGGCTTTGTC 57.903 40.909 10.98 7.25 0.00 3.18
4495 9802 0.321741 TTAATGCGGCTTTGTCGGGA 60.322 50.000 10.98 0.00 0.00 5.14
4505 9812 2.095718 GCTTTGTCGGGAAAGATGTCAC 60.096 50.000 10.24 0.00 35.30 3.67
4509 9816 1.135199 GTCGGGAAAGATGTCACGCTA 60.135 52.381 0.00 0.00 44.24 4.26
4511 9818 1.291132 GGGAAAGATGTCACGCTAGC 58.709 55.000 4.06 4.06 0.00 3.42
4532 9840 1.599797 AAAGGGGAAACTGCGACCG 60.600 57.895 0.00 0.00 0.00 4.79
4533 9841 2.333701 AAAGGGGAAACTGCGACCGT 62.334 55.000 0.00 0.00 0.00 4.83
4534 9842 2.281276 GGGGAAACTGCGACCGTT 60.281 61.111 0.00 0.00 0.00 4.44
4535 9843 2.613506 GGGGAAACTGCGACCGTTG 61.614 63.158 0.00 0.00 0.00 4.10
4536 9844 1.595929 GGGAAACTGCGACCGTTGA 60.596 57.895 0.00 0.00 0.00 3.18
4537 9845 1.161563 GGGAAACTGCGACCGTTGAA 61.162 55.000 0.00 0.00 0.00 2.69
4538 9846 0.872388 GGAAACTGCGACCGTTGAAT 59.128 50.000 0.00 0.00 0.00 2.57
4581 9893 0.606604 AAAGAAAGCTGCTGCATGGG 59.393 50.000 18.42 0.00 42.74 4.00
4617 9929 1.002792 GACGACACTTGTTCAAAGCCC 60.003 52.381 0.00 0.00 0.00 5.19
4618 9930 1.021202 CGACACTTGTTCAAAGCCCA 58.979 50.000 0.00 0.00 0.00 5.36
4619 9931 1.002468 CGACACTTGTTCAAAGCCCAG 60.002 52.381 0.00 0.00 0.00 4.45
4620 9932 0.746659 ACACTTGTTCAAAGCCCAGC 59.253 50.000 0.00 0.00 0.00 4.85
4621 9933 0.032540 CACTTGTTCAAAGCCCAGCC 59.967 55.000 0.00 0.00 0.00 4.85
4644 9956 1.657181 GTTTTGCTTCCCACACGCG 60.657 57.895 3.53 3.53 0.00 6.01
4710 10022 9.063615 GTCTACTTGGATTTTCCTCTTACAAAA 57.936 33.333 0.00 0.00 37.46 2.44
4714 10026 9.147732 ACTTGGATTTTCCTCTTACAAAAATCT 57.852 29.630 15.42 0.00 43.75 2.40
4717 10029 9.807921 TGGATTTTCCTCTTACAAAAATCTACT 57.192 29.630 15.42 0.00 43.75 2.57
4771 10083 7.453393 TCCCTTATAATCAATGCTAGTGAAGG 58.547 38.462 0.00 0.00 0.00 3.46
4782 10094 2.348971 GCTAGTGAAGGTAAAAGCGAGC 59.651 50.000 0.00 0.00 0.00 5.03
4801 10115 5.340667 GCGAGCTCATTTACTTCAAAACAAG 59.659 40.000 15.40 0.00 0.00 3.16
4802 10116 5.853282 CGAGCTCATTTACTTCAAAACAAGG 59.147 40.000 15.40 0.00 0.00 3.61
4803 10117 6.513393 CGAGCTCATTTACTTCAAAACAAGGT 60.513 38.462 15.40 0.00 0.00 3.50
4804 10118 7.307751 CGAGCTCATTTACTTCAAAACAAGGTA 60.308 37.037 15.40 0.00 0.00 3.08
4805 10119 7.649057 AGCTCATTTACTTCAAAACAAGGTAC 58.351 34.615 0.00 0.00 0.00 3.34
4806 10120 6.861572 GCTCATTTACTTCAAAACAAGGTACC 59.138 38.462 2.73 2.73 0.00 3.34
4807 10121 7.469456 GCTCATTTACTTCAAAACAAGGTACCA 60.469 37.037 15.94 0.00 0.00 3.25
4808 10122 7.708998 TCATTTACTTCAAAACAAGGTACCAC 58.291 34.615 15.94 0.00 0.00 4.16
4809 10123 7.558444 TCATTTACTTCAAAACAAGGTACCACT 59.442 33.333 15.94 0.00 0.00 4.00
4810 10124 8.842280 CATTTACTTCAAAACAAGGTACCACTA 58.158 33.333 15.94 0.00 0.00 2.74
4811 10125 7.790823 TTACTTCAAAACAAGGTACCACTAC 57.209 36.000 15.94 0.00 0.00 2.73
4812 10126 5.747342 ACTTCAAAACAAGGTACCACTACA 58.253 37.500 15.94 0.00 0.00 2.74
4813 10127 5.820947 ACTTCAAAACAAGGTACCACTACAG 59.179 40.000 15.94 0.63 0.00 2.74
4814 10128 5.362105 TCAAAACAAGGTACCACTACAGT 57.638 39.130 15.94 0.00 0.00 3.55
4815 10129 6.482898 TCAAAACAAGGTACCACTACAGTA 57.517 37.500 15.94 0.00 0.00 2.74
4816 10130 7.069877 TCAAAACAAGGTACCACTACAGTAT 57.930 36.000 15.94 0.00 0.00 2.12
4857 10171 3.598019 TGGTATCTCCAACGTTGTACC 57.402 47.619 26.90 26.90 44.12 3.34
4859 10173 3.579586 TGGTATCTCCAACGTTGTACCTT 59.420 43.478 30.35 15.80 44.12 3.50
4874 10188 2.209690 ACCTTAAATTGGACACCCCG 57.790 50.000 0.00 0.00 37.93 5.73
4938 10252 1.339929 ACCGGGTGCATCAAGAAAAAC 59.660 47.619 6.32 0.00 0.00 2.43
4939 10253 1.336795 CCGGGTGCATCAAGAAAAACC 60.337 52.381 0.00 0.00 0.00 3.27
4946 10260 2.307049 CATCAAGAAAAACCGACACGC 58.693 47.619 0.00 0.00 0.00 5.34
4950 10264 1.314730 AGAAAAACCGACACGCCATT 58.685 45.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.533994 AGATGATGGGCGGATCGGA 60.534 57.895 4.16 0.00 0.00 4.55
6 7 1.079543 GAGATGATGGGCGGATCGG 60.080 63.158 0.00 0.00 0.00 4.18
7 8 0.108898 GAGAGATGATGGGCGGATCG 60.109 60.000 0.00 0.00 0.00 3.69
8 9 0.248843 GGAGAGATGATGGGCGGATC 59.751 60.000 0.00 0.00 0.00 3.36
9 10 0.178909 AGGAGAGATGATGGGCGGAT 60.179 55.000 0.00 0.00 0.00 4.18
10 11 1.117749 CAGGAGAGATGATGGGCGGA 61.118 60.000 0.00 0.00 0.00 5.54
11 12 1.117749 TCAGGAGAGATGATGGGCGG 61.118 60.000 0.00 0.00 0.00 6.13
12 13 0.317799 CTCAGGAGAGATGATGGGCG 59.682 60.000 0.00 0.00 44.98 6.13
13 14 1.714541 TCTCAGGAGAGATGATGGGC 58.285 55.000 0.00 0.00 45.73 5.36
22 23 4.710423 TTGATTCGTCTTCTCAGGAGAG 57.290 45.455 0.00 0.00 43.48 3.20
23 24 4.098654 GGATTGATTCGTCTTCTCAGGAGA 59.901 45.833 0.00 0.00 35.27 3.71
24 25 4.367450 GGATTGATTCGTCTTCTCAGGAG 58.633 47.826 0.00 0.00 0.00 3.69
25 26 3.181486 CGGATTGATTCGTCTTCTCAGGA 60.181 47.826 0.00 0.00 0.00 3.86
26 27 3.119291 CGGATTGATTCGTCTTCTCAGG 58.881 50.000 0.00 0.00 0.00 3.86
27 28 3.775202 ACGGATTGATTCGTCTTCTCAG 58.225 45.455 0.00 0.00 34.20 3.35
28 29 3.868757 ACGGATTGATTCGTCTTCTCA 57.131 42.857 0.00 0.00 34.20 3.27
35 36 3.594603 AGAGTTGACGGATTGATTCGT 57.405 42.857 0.00 0.00 42.67 3.85
36 37 3.926527 TCAAGAGTTGACGGATTGATTCG 59.073 43.478 0.00 0.00 34.08 3.34
37 38 5.582269 TCATCAAGAGTTGACGGATTGATTC 59.418 40.000 0.00 0.00 43.48 2.52
38 39 5.491070 TCATCAAGAGTTGACGGATTGATT 58.509 37.500 0.00 0.00 43.48 2.57
39 40 5.089970 TCATCAAGAGTTGACGGATTGAT 57.910 39.130 0.00 0.00 43.48 2.57
40 41 4.498241 CTCATCAAGAGTTGACGGATTGA 58.502 43.478 0.00 0.00 43.48 2.57
41 42 3.620374 CCTCATCAAGAGTTGACGGATTG 59.380 47.826 0.00 0.00 43.48 2.67
42 43 3.369892 CCCTCATCAAGAGTTGACGGATT 60.370 47.826 0.00 0.00 43.48 3.01
43 44 2.169352 CCCTCATCAAGAGTTGACGGAT 59.831 50.000 0.00 0.00 43.48 4.18
44 45 1.550524 CCCTCATCAAGAGTTGACGGA 59.449 52.381 0.00 0.00 43.48 4.69
45 46 1.276421 ACCCTCATCAAGAGTTGACGG 59.724 52.381 0.00 0.00 43.48 4.79
46 47 2.738846 CAACCCTCATCAAGAGTTGACG 59.261 50.000 0.00 0.00 43.48 4.35
47 48 3.077359 CCAACCCTCATCAAGAGTTGAC 58.923 50.000 2.91 0.00 43.48 3.18
48 49 2.553028 GCCAACCCTCATCAAGAGTTGA 60.553 50.000 2.91 0.00 43.12 3.18
49 50 1.815003 GCCAACCCTCATCAAGAGTTG 59.185 52.381 0.00 0.00 43.12 3.16
50 51 1.707427 AGCCAACCCTCATCAAGAGTT 59.293 47.619 0.00 0.00 43.12 3.01
51 52 1.366319 AGCCAACCCTCATCAAGAGT 58.634 50.000 0.00 0.00 43.12 3.24
52 53 2.503895 AAGCCAACCCTCATCAAGAG 57.496 50.000 0.00 0.00 44.31 2.85
53 54 2.978156 AAAGCCAACCCTCATCAAGA 57.022 45.000 0.00 0.00 0.00 3.02
112 114 6.734137 TGTCCAAAAATGACATCTGTGTTAC 58.266 36.000 0.00 0.00 39.09 2.50
131 133 2.024655 ACGGAGGGAGTAATACTGTCCA 60.025 50.000 0.00 0.00 31.31 4.02
132 134 2.664015 ACGGAGGGAGTAATACTGTCC 58.336 52.381 0.00 0.56 0.00 4.02
139 141 6.954232 TCTATTTTGAAACGGAGGGAGTAAT 58.046 36.000 0.00 0.00 0.00 1.89
144 146 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
145 147 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
146 148 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
147 149 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
148 150 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
149 151 5.637006 TTGGGTCATCTATTTTGAAACGG 57.363 39.130 0.00 0.00 0.00 4.44
150 152 8.532977 AAAATTGGGTCATCTATTTTGAAACG 57.467 30.769 0.00 0.00 31.14 3.60
190 192 9.736023 GTTTCAAAATAGATGAGTCAACTTTGT 57.264 29.630 8.34 0.00 0.00 2.83
191 193 9.734620 TGTTTCAAAATAGATGAGTCAACTTTG 57.265 29.630 8.34 7.47 0.00 2.77
192 194 9.956720 CTGTTTCAAAATAGATGAGTCAACTTT 57.043 29.630 8.34 0.00 29.67 2.66
193 195 9.342308 TCTGTTTCAAAATAGATGAGTCAACTT 57.658 29.630 8.34 0.00 32.24 2.66
194 196 8.908786 TCTGTTTCAAAATAGATGAGTCAACT 57.091 30.769 8.12 8.12 32.24 3.16
195 197 8.233190 CCTCTGTTTCAAAATAGATGAGTCAAC 58.767 37.037 0.00 0.00 35.92 3.18
196 198 7.391554 CCCTCTGTTTCAAAATAGATGAGTCAA 59.608 37.037 0.00 0.00 35.92 3.18
197 199 6.881065 CCCTCTGTTTCAAAATAGATGAGTCA 59.119 38.462 0.00 0.00 35.92 3.41
198 200 7.106239 TCCCTCTGTTTCAAAATAGATGAGTC 58.894 38.462 2.91 0.00 35.92 3.36
199 201 7.020827 TCCCTCTGTTTCAAAATAGATGAGT 57.979 36.000 2.91 0.00 35.92 3.41
200 202 7.108847 ACTCCCTCTGTTTCAAAATAGATGAG 58.891 38.462 17.61 17.61 38.87 2.90
201 203 7.020827 ACTCCCTCTGTTTCAAAATAGATGA 57.979 36.000 2.91 3.20 35.92 2.92
202 204 8.970859 ATACTCCCTCTGTTTCAAAATAGATG 57.029 34.615 2.91 1.27 35.92 2.90
203 205 8.772250 TGATACTCCCTCTGTTTCAAAATAGAT 58.228 33.333 2.91 0.00 35.92 1.98
204 206 8.146053 TGATACTCCCTCTGTTTCAAAATAGA 57.854 34.615 2.56 2.56 35.32 1.98
205 207 8.970859 ATGATACTCCCTCTGTTTCAAAATAG 57.029 34.615 0.00 0.00 31.42 1.73
206 208 9.753674 AAATGATACTCCCTCTGTTTCAAAATA 57.246 29.630 0.00 0.00 31.42 1.40
207 209 8.655935 AAATGATACTCCCTCTGTTTCAAAAT 57.344 30.769 0.00 0.00 31.42 1.82
208 210 8.477419 AAAATGATACTCCCTCTGTTTCAAAA 57.523 30.769 0.00 0.00 31.42 2.44
209 211 9.231297 CTAAAATGATACTCCCTCTGTTTCAAA 57.769 33.333 0.00 0.00 31.42 2.69
210 212 7.829211 CCTAAAATGATACTCCCTCTGTTTCAA 59.171 37.037 0.00 0.00 31.42 2.69
211 213 7.338710 CCTAAAATGATACTCCCTCTGTTTCA 58.661 38.462 0.00 0.00 31.99 2.69
212 214 6.768381 CCCTAAAATGATACTCCCTCTGTTTC 59.232 42.308 0.00 0.00 0.00 2.78
213 215 6.447084 TCCCTAAAATGATACTCCCTCTGTTT 59.553 38.462 0.00 0.00 0.00 2.83
214 216 5.970640 TCCCTAAAATGATACTCCCTCTGTT 59.029 40.000 0.00 0.00 0.00 3.16
215 217 5.367060 GTCCCTAAAATGATACTCCCTCTGT 59.633 44.000 0.00 0.00 0.00 3.41
216 218 5.366768 TGTCCCTAAAATGATACTCCCTCTG 59.633 44.000 0.00 0.00 0.00 3.35
217 219 5.538877 TGTCCCTAAAATGATACTCCCTCT 58.461 41.667 0.00 0.00 0.00 3.69
218 220 5.888982 TGTCCCTAAAATGATACTCCCTC 57.111 43.478 0.00 0.00 0.00 4.30
219 221 5.104067 GGTTGTCCCTAAAATGATACTCCCT 60.104 44.000 0.00 0.00 0.00 4.20
220 222 5.131067 GGTTGTCCCTAAAATGATACTCCC 58.869 45.833 0.00 0.00 0.00 4.30
221 223 5.751586 TGGTTGTCCCTAAAATGATACTCC 58.248 41.667 0.00 0.00 0.00 3.85
222 224 6.415573 ACTGGTTGTCCCTAAAATGATACTC 58.584 40.000 0.00 0.00 0.00 2.59
223 225 6.215636 AGACTGGTTGTCCCTAAAATGATACT 59.784 38.462 0.00 0.00 46.46 2.12
224 226 6.415573 AGACTGGTTGTCCCTAAAATGATAC 58.584 40.000 0.00 0.00 46.46 2.24
225 227 6.636454 AGACTGGTTGTCCCTAAAATGATA 57.364 37.500 0.00 0.00 46.46 2.15
226 228 5.520748 AGACTGGTTGTCCCTAAAATGAT 57.479 39.130 0.00 0.00 46.46 2.45
227 229 4.993705 AGACTGGTTGTCCCTAAAATGA 57.006 40.909 0.00 0.00 46.46 2.57
228 230 4.321230 GCAAGACTGGTTGTCCCTAAAATG 60.321 45.833 0.00 0.00 46.46 2.32
229 231 3.826729 GCAAGACTGGTTGTCCCTAAAAT 59.173 43.478 0.00 0.00 46.46 1.82
230 232 3.219281 GCAAGACTGGTTGTCCCTAAAA 58.781 45.455 0.00 0.00 46.46 1.52
231 233 2.173782 TGCAAGACTGGTTGTCCCTAAA 59.826 45.455 0.00 0.00 46.46 1.85
232 234 1.771854 TGCAAGACTGGTTGTCCCTAA 59.228 47.619 0.00 0.00 46.46 2.69
233 235 1.347707 CTGCAAGACTGGTTGTCCCTA 59.652 52.381 0.00 0.00 46.46 3.53
234 236 0.109342 CTGCAAGACTGGTTGTCCCT 59.891 55.000 0.00 0.00 46.46 4.20
235 237 0.890996 CCTGCAAGACTGGTTGTCCC 60.891 60.000 0.00 0.00 46.46 4.46
236 238 0.108585 TCCTGCAAGACTGGTTGTCC 59.891 55.000 0.00 0.00 46.46 4.02
237 239 2.079925 GATCCTGCAAGACTGGTTGTC 58.920 52.381 0.00 0.00 45.67 3.18
238 240 1.701847 AGATCCTGCAAGACTGGTTGT 59.298 47.619 0.00 0.00 38.49 3.32
239 241 2.486472 AGATCCTGCAAGACTGGTTG 57.514 50.000 0.00 0.00 38.49 3.77
240 242 4.851639 AATAGATCCTGCAAGACTGGTT 57.148 40.909 0.00 0.00 38.49 3.67
241 243 4.851639 AAATAGATCCTGCAAGACTGGT 57.148 40.909 0.00 0.00 38.49 4.00
242 244 7.630242 TTTAAAATAGATCCTGCAAGACTGG 57.370 36.000 0.00 0.00 38.71 4.00
263 265 8.720537 CCCTAAAATGGTACTCCCTCTATTTTA 58.279 37.037 0.00 0.00 32.07 1.52
264 266 7.407918 TCCCTAAAATGGTACTCCCTCTATTTT 59.592 37.037 0.00 0.00 33.35 1.82
265 267 6.912561 TCCCTAAAATGGTACTCCCTCTATTT 59.087 38.462 0.00 0.00 0.00 1.40
266 268 6.329460 GTCCCTAAAATGGTACTCCCTCTATT 59.671 42.308 0.00 0.00 0.00 1.73
267 269 5.845065 GTCCCTAAAATGGTACTCCCTCTAT 59.155 44.000 0.00 0.00 0.00 1.98
268 270 5.214293 GTCCCTAAAATGGTACTCCCTCTA 58.786 45.833 0.00 0.00 0.00 2.43
269 271 4.038633 GTCCCTAAAATGGTACTCCCTCT 58.961 47.826 0.00 0.00 0.00 3.69
270 272 3.136077 GGTCCCTAAAATGGTACTCCCTC 59.864 52.174 0.00 0.00 0.00 4.30
271 273 3.120898 GGTCCCTAAAATGGTACTCCCT 58.879 50.000 0.00 0.00 0.00 4.20
272 274 2.848071 TGGTCCCTAAAATGGTACTCCC 59.152 50.000 0.00 0.00 0.00 4.30
273 275 3.522343 ACTGGTCCCTAAAATGGTACTCC 59.478 47.826 0.00 0.00 0.00 3.85
274 276 4.019591 ACACTGGTCCCTAAAATGGTACTC 60.020 45.833 0.00 0.00 0.00 2.59
275 277 3.914435 ACACTGGTCCCTAAAATGGTACT 59.086 43.478 0.00 0.00 0.00 2.73
276 278 4.296621 ACACTGGTCCCTAAAATGGTAC 57.703 45.455 0.00 0.00 0.00 3.34
277 279 4.351407 TCAACACTGGTCCCTAAAATGGTA 59.649 41.667 0.00 0.00 0.00 3.25
278 280 3.139397 TCAACACTGGTCCCTAAAATGGT 59.861 43.478 0.00 0.00 0.00 3.55
279 281 3.506067 GTCAACACTGGTCCCTAAAATGG 59.494 47.826 0.00 0.00 0.00 3.16
300 302 2.435372 TTTCCTGCAAGACTGGTTGT 57.565 45.000 0.00 0.00 38.49 3.32
351 354 0.041238 TCAGCTACCAGCCCTAGTGT 59.959 55.000 0.00 0.00 43.77 3.55
352 355 0.749649 CTCAGCTACCAGCCCTAGTG 59.250 60.000 0.00 0.00 43.77 2.74
446 452 1.765314 GTGTACAGCATCTGGGAGGAT 59.235 52.381 0.00 0.00 35.51 3.24
461 467 3.554129 GGCCAAGACCCAAAAATGTGTAC 60.554 47.826 0.00 0.00 0.00 2.90
470 476 2.909965 GTGCGGCCAAGACCCAAA 60.910 61.111 2.24 0.00 0.00 3.28
517 523 3.699038 CCTTGTCTTGGAACCAGTTTGAA 59.301 43.478 0.00 0.00 0.00 2.69
525 531 3.409570 GGACTTACCTTGTCTTGGAACC 58.590 50.000 0.00 0.00 35.04 3.62
607 2380 5.694458 CGTATTTGACCTTTTCCTTTTTGGG 59.306 40.000 0.00 0.00 36.20 4.12
608 2381 6.508777 TCGTATTTGACCTTTTCCTTTTTGG 58.491 36.000 0.00 0.00 37.10 3.28
609 2382 7.422399 TCTCGTATTTGACCTTTTCCTTTTTG 58.578 34.615 0.00 0.00 0.00 2.44
614 2389 5.725362 CTCTCTCGTATTTGACCTTTTCCT 58.275 41.667 0.00 0.00 0.00 3.36
621 2396 3.784701 TGAGCTCTCTCGTATTTGACC 57.215 47.619 16.19 0.00 42.26 4.02
622 2397 4.739195 AGTTGAGCTCTCTCGTATTTGAC 58.261 43.478 16.19 0.00 42.26 3.18
651 2453 0.175760 GTGATCCGGCAGCTTGACTA 59.824 55.000 0.00 0.00 0.00 2.59
689 2491 3.726607 GTCTCTTATCTGCCCATGTCTG 58.273 50.000 0.00 0.00 0.00 3.51
714 2531 2.441532 GGAGATCGTCCCGTCCCA 60.442 66.667 0.98 0.00 39.88 4.37
729 2546 6.183360 TGGAAGTACACTCTTTAAAAGACGGA 60.183 38.462 0.00 0.00 33.12 4.69
730 2547 5.987347 TGGAAGTACACTCTTTAAAAGACGG 59.013 40.000 0.00 0.00 33.12 4.79
731 2548 7.473027 TTGGAAGTACACTCTTTAAAAGACG 57.527 36.000 0.00 0.00 33.12 4.18
811 3908 6.902341 ACTACTAATTTCATGGCATAATGCG 58.098 36.000 0.00 0.00 46.21 4.73
812 3909 8.783093 TGTACTACTAATTTCATGGCATAATGC 58.217 33.333 0.00 0.00 44.08 3.56
853 3950 9.625747 TGTGAAACCAAATAGCTATATGATGAA 57.374 29.630 6.68 0.00 34.36 2.57
857 3954 9.237187 TGTTTGTGAAACCAAATAGCTATATGA 57.763 29.630 6.68 0.00 40.67 2.15
860 3957 9.853555 CAATGTTTGTGAAACCAAATAGCTATA 57.146 29.630 6.68 0.00 40.67 1.31
861 3958 8.584157 TCAATGTTTGTGAAACCAAATAGCTAT 58.416 29.630 0.00 0.00 40.67 2.97
862 3959 7.946207 TCAATGTTTGTGAAACCAAATAGCTA 58.054 30.769 0.00 0.00 40.67 3.32
863 3960 6.815089 TCAATGTTTGTGAAACCAAATAGCT 58.185 32.000 0.00 0.00 40.67 3.32
864 3961 7.656707 ATCAATGTTTGTGAAACCAAATAGC 57.343 32.000 0.00 0.00 40.67 2.97
873 3970 9.755804 TGCAAAACTATATCAATGTTTGTGAAA 57.244 25.926 0.00 0.00 34.63 2.69
875 3972 8.355913 TGTGCAAAACTATATCAATGTTTGTGA 58.644 29.630 0.00 0.00 34.63 3.58
877 3974 9.539825 TTTGTGCAAAACTATATCAATGTTTGT 57.460 25.926 0.00 0.00 34.63 2.83
890 3987 9.570488 ACGTACTTTAAATTTTGTGCAAAACTA 57.430 25.926 11.64 5.03 42.32 2.24
891 3988 8.468720 ACGTACTTTAAATTTTGTGCAAAACT 57.531 26.923 11.64 0.00 42.32 2.66
894 3991 9.731819 TGATACGTACTTTAAATTTTGTGCAAA 57.268 25.926 0.00 0.00 0.00 3.68
895 3992 9.900710 ATGATACGTACTTTAAATTTTGTGCAA 57.099 25.926 0.00 0.00 0.00 4.08
897 3994 9.549509 TCATGATACGTACTTTAAATTTTGTGC 57.450 29.630 0.00 0.00 0.00 4.57
904 4001 9.431887 ACAACTGTCATGATACGTACTTTAAAT 57.568 29.630 0.00 0.00 0.00 1.40
905 4002 8.821147 ACAACTGTCATGATACGTACTTTAAA 57.179 30.769 0.00 0.00 0.00 1.52
906 4003 8.456904 GACAACTGTCATGATACGTACTTTAA 57.543 34.615 0.00 0.00 44.18 1.52
908 4005 6.946229 GACAACTGTCATGATACGTACTTT 57.054 37.500 0.00 0.00 44.18 2.66
926 4023 3.440228 GATCTAGAACGCCTGAGACAAC 58.560 50.000 0.00 0.00 0.00 3.32
933 4052 0.317103 CCGACGATCTAGAACGCCTG 60.317 60.000 20.84 11.24 0.00 4.85
934 4053 2.023318 CCGACGATCTAGAACGCCT 58.977 57.895 20.84 3.83 0.00 5.52
1019 4143 1.785353 TTACTGGGCCCCACTTGACC 61.785 60.000 22.27 0.00 0.00 4.02
1048 4173 0.671163 CGTGTGGGCGGCTAAAGTAA 60.671 55.000 9.56 0.00 0.00 2.24
1082 4224 3.378399 GAAGAGGAGGGCAGACGGC 62.378 68.421 0.00 0.00 43.74 5.68
1087 4229 0.906756 TGGTGAGAAGAGGAGGGCAG 60.907 60.000 0.00 0.00 0.00 4.85
1089 4231 0.467804 GATGGTGAGAAGAGGAGGGC 59.532 60.000 0.00 0.00 0.00 5.19
1090 4232 1.127343 GGATGGTGAGAAGAGGAGGG 58.873 60.000 0.00 0.00 0.00 4.30
1173 4778 4.838486 GTCGCCGTCGCTCTCTGG 62.838 72.222 0.00 0.00 35.26 3.86
1194 4799 3.984200 CTTCGAAGCCGTCCCCGTC 62.984 68.421 13.09 0.00 37.05 4.79
1195 4800 4.065281 CTTCGAAGCCGTCCCCGT 62.065 66.667 13.09 0.00 37.05 5.28
1196 4801 4.814294 CCTTCGAAGCCGTCCCCG 62.814 72.222 19.99 0.00 37.05 5.73
1199 4804 4.736896 ACGCCTTCGAAGCCGTCC 62.737 66.667 26.48 7.89 39.41 4.79
1200 4805 3.479269 CACGCCTTCGAAGCCGTC 61.479 66.667 28.86 11.94 39.41 4.79
1202 4807 4.735132 TCCACGCCTTCGAAGCCG 62.735 66.667 25.10 25.10 39.41 5.52
1203 4808 3.119096 GTCCACGCCTTCGAAGCC 61.119 66.667 19.99 8.00 39.41 4.35
1204 4809 3.479269 CGTCCACGCCTTCGAAGC 61.479 66.667 19.99 13.66 39.41 3.86
1205 4810 1.801913 CTCGTCCACGCCTTCGAAG 60.802 63.158 18.51 18.51 39.60 3.79
1206 4811 2.257371 CTCGTCCACGCCTTCGAA 59.743 61.111 0.00 0.00 39.60 3.71
1207 4812 3.744719 CCTCGTCCACGCCTTCGA 61.745 66.667 0.00 0.00 39.60 3.71
1208 4813 4.796231 CCCTCGTCCACGCCTTCG 62.796 72.222 0.00 0.00 39.60 3.79
1542 5147 1.004440 GAGGAGAGCGGCAAACAGT 60.004 57.895 1.45 0.00 0.00 3.55
1544 5149 0.246635 GTAGAGGAGAGCGGCAAACA 59.753 55.000 1.45 0.00 0.00 2.83
1769 5377 1.257750 CCCGGTGATGGTGAGAGTGA 61.258 60.000 0.00 0.00 0.00 3.41
1963 5583 3.588842 AGACAGACATCCCCTGATTTCAA 59.411 43.478 0.00 0.00 35.69 2.69
1969 5589 2.392662 GATGAGACAGACATCCCCTGA 58.607 52.381 0.00 0.00 38.40 3.86
2186 5816 4.344390 ACTCGGAGTAGAAAAGGTTGACTT 59.656 41.667 9.33 0.00 42.52 3.01
2256 5900 9.874205 CCATCTTGGCTAAGAAAAATAAATCAA 57.126 29.630 17.05 0.00 45.47 2.57
2257 5901 9.034800 ACCATCTTGGCTAAGAAAAATAAATCA 57.965 29.630 17.05 0.00 45.47 2.57
2273 5925 1.709147 CGCTGTGCTACCATCTTGGC 61.709 60.000 0.00 0.00 42.67 4.52
2274 5926 0.108186 TCGCTGTGCTACCATCTTGG 60.108 55.000 0.00 0.00 45.02 3.61
2275 5927 1.725641 TTCGCTGTGCTACCATCTTG 58.274 50.000 0.00 0.00 0.00 3.02
2276 5928 2.283298 CATTCGCTGTGCTACCATCTT 58.717 47.619 0.00 0.00 0.00 2.40
2277 5929 1.208052 ACATTCGCTGTGCTACCATCT 59.792 47.619 0.00 0.00 36.48 2.90
2278 5930 1.594862 GACATTCGCTGTGCTACCATC 59.405 52.381 0.00 0.00 38.54 3.51
2279 5931 1.208052 AGACATTCGCTGTGCTACCAT 59.792 47.619 0.00 0.00 38.54 3.55
2280 5932 0.608130 AGACATTCGCTGTGCTACCA 59.392 50.000 0.00 0.00 38.54 3.25
2281 5933 1.394917 CAAGACATTCGCTGTGCTACC 59.605 52.381 0.00 0.00 38.54 3.18
2282 5934 2.092838 GTCAAGACATTCGCTGTGCTAC 59.907 50.000 0.00 0.00 38.54 3.58
2283 5935 2.337583 GTCAAGACATTCGCTGTGCTA 58.662 47.619 0.00 0.00 38.54 3.49
2284 5936 1.151668 GTCAAGACATTCGCTGTGCT 58.848 50.000 0.00 0.00 38.54 4.40
2285 5937 0.166814 GGTCAAGACATTCGCTGTGC 59.833 55.000 2.29 0.00 38.54 4.57
2286 5938 1.462283 CTGGTCAAGACATTCGCTGTG 59.538 52.381 2.29 0.00 38.54 3.66
2414 6066 8.716646 AAACCCAAAATCTAAAACTTGAACTG 57.283 30.769 0.00 0.00 0.00 3.16
2715 6368 5.183904 AGACCAAACTTCAGAATGTAATGCC 59.816 40.000 0.00 0.00 37.40 4.40
2877 6530 7.226325 CCCATCTAATTCAAGACAGATCAAGTC 59.774 40.741 9.57 9.57 36.26 3.01
2879 6532 6.017275 GCCCATCTAATTCAAGACAGATCAAG 60.017 42.308 0.00 0.00 0.00 3.02
2909 6562 3.055602 TGACATCCTGACATGACTTCCAG 60.056 47.826 0.00 0.00 0.00 3.86
3260 6913 0.317519 CCCCGTTGCGACAGAAAAAC 60.318 55.000 4.64 0.00 0.00 2.43
3353 7006 2.006056 GCTTCTGCATCTTCGCTGAGT 61.006 52.381 0.00 0.00 40.38 3.41
3470 7123 0.456312 GACCCGTCTGCAGTTCTACG 60.456 60.000 14.67 15.67 35.20 3.51
3530 7183 2.697751 CAAAAGTGGGACCCAACATTCA 59.302 45.455 16.98 0.00 34.18 2.57
3705 7367 0.458025 GAAGTCCGGTGCGAACTAGG 60.458 60.000 0.00 0.00 0.00 3.02
3707 7369 0.896940 AGGAAGTCCGGTGCGAACTA 60.897 55.000 0.00 0.00 42.08 2.24
3760 7422 1.211703 TCTCTTCCAACCACACAGCAA 59.788 47.619 0.00 0.00 0.00 3.91
3853 7515 4.378978 GCTAATGTGGTACGACAAATGCAA 60.379 41.667 14.97 0.00 0.00 4.08
3854 7516 3.126171 GCTAATGTGGTACGACAAATGCA 59.874 43.478 14.97 0.00 0.00 3.96
3895 7567 4.386951 CACGGCCGGATCACCACA 62.387 66.667 31.76 0.00 35.59 4.17
4020 7692 8.588290 AACATTGCATTTCCCTACAGTATAAA 57.412 30.769 0.00 0.00 0.00 1.40
4027 7699 5.543507 ACAAAACATTGCATTTCCCTACA 57.456 34.783 0.00 0.00 0.00 2.74
4028 7700 5.118510 CGAACAAAACATTGCATTTCCCTAC 59.881 40.000 0.00 0.00 0.00 3.18
4063 7735 5.307196 GGTCACATATATGGGGTAAGACTGT 59.693 44.000 15.01 0.00 0.00 3.55
4078 7750 6.392354 CAAAGAATTGTGCTTGGTCACATAT 58.608 36.000 0.00 0.00 45.26 1.78
4121 7845 4.704540 TGGAAAACTCTGCACTCTTTTTCA 59.295 37.500 14.98 7.30 37.73 2.69
4160 7885 6.249260 GCACTTGTAATACAGCTTGATTTTCG 59.751 38.462 0.00 0.00 0.00 3.46
4161 7886 7.083858 TGCACTTGTAATACAGCTTGATTTTC 58.916 34.615 5.04 0.00 0.00 2.29
4201 7926 8.768397 TCCATCTCTGTAAATACCATTTGTAGT 58.232 33.333 0.00 0.00 31.61 2.73
4202 7927 9.265901 CTCCATCTCTGTAAATACCATTTGTAG 57.734 37.037 0.00 0.00 31.61 2.74
4238 7963 1.421480 GGGCCTAGTCCCGTCTTATT 58.579 55.000 0.84 0.00 36.38 1.40
4246 7971 1.690985 AGCTTCTGGGCCTAGTCCC 60.691 63.158 16.69 0.45 46.73 4.46
4247 7972 1.524482 CAGCTTCTGGGCCTAGTCC 59.476 63.158 16.69 5.72 0.00 3.85
4257 7982 0.390860 CGATCCCTACCCAGCTTCTG 59.609 60.000 0.00 0.00 0.00 3.02
4259 7984 0.759436 TCCGATCCCTACCCAGCTTC 60.759 60.000 0.00 0.00 0.00 3.86
4260 7985 0.104934 ATCCGATCCCTACCCAGCTT 60.105 55.000 0.00 0.00 0.00 3.74
4262 7987 0.765510 AAATCCGATCCCTACCCAGC 59.234 55.000 0.00 0.00 0.00 4.85
4263 7988 2.487265 CCAAAATCCGATCCCTACCCAG 60.487 54.545 0.00 0.00 0.00 4.45
4264 7989 1.493022 CCAAAATCCGATCCCTACCCA 59.507 52.381 0.00 0.00 0.00 4.51
4265 7990 1.202891 CCCAAAATCCGATCCCTACCC 60.203 57.143 0.00 0.00 0.00 3.69
4266 7991 1.772453 TCCCAAAATCCGATCCCTACC 59.228 52.381 0.00 0.00 0.00 3.18
4267 7992 2.704065 TCTCCCAAAATCCGATCCCTAC 59.296 50.000 0.00 0.00 0.00 3.18
4268 7993 3.054779 TCTCCCAAAATCCGATCCCTA 57.945 47.619 0.00 0.00 0.00 3.53
4307 8032 2.890945 GTGTCATGTAGGCCCAGTTTTT 59.109 45.455 0.00 0.00 0.00 1.94
4308 8033 2.514803 GTGTCATGTAGGCCCAGTTTT 58.485 47.619 0.00 0.00 0.00 2.43
4309 8034 1.271926 GGTGTCATGTAGGCCCAGTTT 60.272 52.381 0.00 0.00 0.00 2.66
4310 8035 0.328258 GGTGTCATGTAGGCCCAGTT 59.672 55.000 0.00 0.00 0.00 3.16
4311 8036 1.562672 GGGTGTCATGTAGGCCCAGT 61.563 60.000 0.00 0.00 39.13 4.00
4312 8037 1.224592 GGGTGTCATGTAGGCCCAG 59.775 63.158 0.00 0.00 39.13 4.45
4313 8038 2.305607 GGGGTGTCATGTAGGCCCA 61.306 63.158 0.00 0.00 41.02 5.36
4314 8039 1.858739 TTGGGGTGTCATGTAGGCCC 61.859 60.000 0.00 8.25 38.61 5.80
4315 8040 0.394352 CTTGGGGTGTCATGTAGGCC 60.394 60.000 0.00 0.00 0.00 5.19
4316 8041 1.032114 GCTTGGGGTGTCATGTAGGC 61.032 60.000 0.00 0.00 0.00 3.93
4317 8042 0.620556 AGCTTGGGGTGTCATGTAGG 59.379 55.000 0.00 0.00 0.00 3.18
4318 8043 1.742761 CAGCTTGGGGTGTCATGTAG 58.257 55.000 0.00 0.00 36.34 2.74
4319 8044 0.322456 GCAGCTTGGGGTGTCATGTA 60.322 55.000 0.00 0.00 42.33 2.29
4320 8045 1.604593 GCAGCTTGGGGTGTCATGT 60.605 57.895 0.00 0.00 42.33 3.21
4321 8046 2.345760 GGCAGCTTGGGGTGTCATG 61.346 63.158 0.00 0.00 44.00 3.07
4322 8047 2.036256 GGCAGCTTGGGGTGTCAT 59.964 61.111 0.00 0.00 44.00 3.06
4324 8049 2.674380 CTGGCAGCTTGGGGTGTC 60.674 66.667 0.00 0.00 44.71 3.67
4325 8050 2.296945 TTTCTGGCAGCTTGGGGTGT 62.297 55.000 10.34 0.00 42.33 4.16
4326 8051 0.901580 ATTTCTGGCAGCTTGGGGTG 60.902 55.000 10.34 0.00 43.11 4.61
4327 8052 0.613012 GATTTCTGGCAGCTTGGGGT 60.613 55.000 10.34 0.00 0.00 4.95
4328 8053 0.612732 TGATTTCTGGCAGCTTGGGG 60.613 55.000 10.34 0.00 0.00 4.96
4329 8054 1.407979 GATGATTTCTGGCAGCTTGGG 59.592 52.381 10.34 0.00 0.00 4.12
4330 8055 2.376109 AGATGATTTCTGGCAGCTTGG 58.624 47.619 10.34 0.00 31.79 3.61
4334 8059 1.332997 CGGAAGATGATTTCTGGCAGC 59.667 52.381 10.34 0.00 33.93 5.25
4377 9682 4.672413 GTGCTGATGACTTTTTGTCTTTCG 59.328 41.667 0.00 0.00 45.54 3.46
4383 9688 5.163530 TGTGATTGTGCTGATGACTTTTTGT 60.164 36.000 0.00 0.00 0.00 2.83
4384 9689 5.283294 TGTGATTGTGCTGATGACTTTTTG 58.717 37.500 0.00 0.00 0.00 2.44
4403 9710 0.449786 CAACCGTTGTGCACTTGTGA 59.550 50.000 19.41 0.00 0.00 3.58
4408 9715 3.216292 GCCCAACCGTTGTGCACT 61.216 61.111 19.41 0.00 34.02 4.40
4409 9716 3.216292 AGCCCAACCGTTGTGCAC 61.216 61.111 19.06 10.75 36.44 4.57
4410 9717 3.215568 CAGCCCAACCGTTGTGCA 61.216 61.111 19.06 0.00 36.44 4.57
4411 9718 3.977244 CCAGCCCAACCGTTGTGC 61.977 66.667 10.40 10.40 34.03 4.57
4412 9719 2.203280 TCCAGCCCAACCGTTGTG 60.203 61.111 10.34 0.00 0.00 3.33
4413 9720 2.113139 CTCCAGCCCAACCGTTGT 59.887 61.111 10.34 0.00 0.00 3.32
4414 9721 2.463589 TAGCTCCAGCCCAACCGTTG 62.464 60.000 4.12 4.12 43.38 4.10
4415 9722 2.185310 CTAGCTCCAGCCCAACCGTT 62.185 60.000 0.00 0.00 43.38 4.44
4424 9731 0.669077 TTACGCTAGCTAGCTCCAGC 59.331 55.000 36.02 23.69 46.85 4.85
4458 9765 8.773645 CCGCATTAAATCAGTAATCATCTTGTA 58.226 33.333 0.00 0.00 0.00 2.41
4462 9769 6.000219 AGCCGCATTAAATCAGTAATCATCT 59.000 36.000 0.00 0.00 0.00 2.90
4472 9779 2.159448 CCGACAAAGCCGCATTAAATCA 60.159 45.455 0.00 0.00 0.00 2.57
4475 9782 0.523966 CCCGACAAAGCCGCATTAAA 59.476 50.000 0.00 0.00 0.00 1.52
4482 9789 0.447801 CATCTTTCCCGACAAAGCCG 59.552 55.000 2.13 0.00 33.94 5.52
4491 9798 1.560923 CTAGCGTGACATCTTTCCCG 58.439 55.000 0.00 0.00 0.00 5.14
4495 9802 0.613260 TGGGCTAGCGTGACATCTTT 59.387 50.000 9.00 0.00 0.00 2.52
4524 9832 1.428448 TTCAGATTCAACGGTCGCAG 58.572 50.000 0.00 0.00 0.00 5.18
4554 9862 3.793465 GCAGCAGCTTTCTTTCGTTTTCT 60.793 43.478 0.00 0.00 37.91 2.52
4557 9865 1.405105 TGCAGCAGCTTTCTTTCGTTT 59.595 42.857 1.76 0.00 42.74 3.60
4617 9929 1.000171 GGGAAGCAAAACAAGAGGCTG 60.000 52.381 0.00 0.00 36.58 4.85
4618 9930 1.332195 GGGAAGCAAAACAAGAGGCT 58.668 50.000 0.00 0.00 38.45 4.58
4619 9931 1.039856 TGGGAAGCAAAACAAGAGGC 58.960 50.000 0.00 0.00 0.00 4.70
4620 9932 2.031120 TGTGGGAAGCAAAACAAGAGG 58.969 47.619 0.00 0.00 0.00 3.69
4621 9933 2.541588 CGTGTGGGAAGCAAAACAAGAG 60.542 50.000 0.00 0.00 0.00 2.85
4644 9956 3.106407 GACGTGCTGCGACTGTCC 61.106 66.667 0.00 0.00 44.77 4.02
4752 10064 8.624776 GCTTTTACCTTCACTAGCATTGATTAT 58.375 33.333 0.00 0.00 0.00 1.28
4753 10065 7.201609 CGCTTTTACCTTCACTAGCATTGATTA 60.202 37.037 0.00 0.00 0.00 1.75
4756 10068 4.391830 CGCTTTTACCTTCACTAGCATTGA 59.608 41.667 0.00 0.00 0.00 2.57
4771 10083 6.165659 TGAAGTAAATGAGCTCGCTTTTAC 57.834 37.500 24.75 24.75 38.04 2.01
4775 10087 5.008613 TGTTTTGAAGTAAATGAGCTCGCTT 59.991 36.000 9.64 7.27 0.00 4.68
4782 10094 7.860872 GTGGTACCTTGTTTTGAAGTAAATGAG 59.139 37.037 14.36 0.00 0.00 2.90
4801 10115 8.891720 GCTAGATGTATATACTGTAGTGGTACC 58.108 40.741 13.89 4.43 0.00 3.34
4802 10116 9.669887 AGCTAGATGTATATACTGTAGTGGTAC 57.330 37.037 13.89 0.00 0.00 3.34
4804 10118 9.589461 AAAGCTAGATGTATATACTGTAGTGGT 57.411 33.333 13.89 3.59 0.00 4.16
4857 10171 6.073440 CGTATATTCGGGGTGTCCAATTTAAG 60.073 42.308 0.00 0.00 34.36 1.85
4859 10173 5.163322 ACGTATATTCGGGGTGTCCAATTTA 60.163 40.000 6.69 0.00 34.36 1.40
4901 10215 1.202486 CGGTTGAATAGCCGGCTTCTA 60.202 52.381 37.74 21.16 45.65 2.10
4904 10218 4.218722 CGGTTGAATAGCCGGCTT 57.781 55.556 37.74 19.37 45.65 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.