Multiple sequence alignment - TraesCS2B01G043500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G043500 chr2B 100.000 5951 0 0 1 5951 20154398 20148448 0.000000e+00 10990
1 TraesCS2B01G043500 chr2D 91.887 6015 342 62 1 5928 12618676 12624631 0.000000e+00 8270
2 TraesCS2B01G043500 chr2D 89.790 333 30 3 5310 5640 12629868 12630198 1.980000e-114 424
3 TraesCS2B01G043500 chr2D 83.333 156 16 8 748 900 12588946 12589094 1.040000e-27 135
4 TraesCS2B01G043500 chr2A 91.711 5767 294 73 262 5928 14675867 14681549 0.000000e+00 7832
5 TraesCS2B01G043500 chr2A 85.333 750 79 18 5190 5928 14694139 14694868 0.000000e+00 747
6 TraesCS2B01G043500 chr2A 84.961 778 68 17 5190 5928 14706534 14707301 0.000000e+00 743
7 TraesCS2B01G043500 chr2A 85.587 562 53 13 5190 5734 14725567 14726117 1.120000e-156 564
8 TraesCS2B01G043500 chr2A 89.905 317 27 2 5156 5472 14716183 14716494 2.580000e-108 403
9 TraesCS2B01G043500 chr2A 86.307 241 24 6 12 251 14675237 14675469 2.750000e-63 254
10 TraesCS2B01G043500 chr2A 85.350 157 20 3 5454 5609 14718533 14718687 6.170000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G043500 chr2B 20148448 20154398 5950 True 10990 10990 100.0000 1 5951 1 chr2B.!!$R1 5950
1 TraesCS2B01G043500 chr2D 12618676 12624631 5955 False 8270 8270 91.8870 1 5928 1 chr2D.!!$F2 5927
2 TraesCS2B01G043500 chr2A 14675237 14681549 6312 False 4043 7832 89.0090 12 5928 2 chr2A.!!$F4 5916
3 TraesCS2B01G043500 chr2A 14694139 14694868 729 False 747 747 85.3330 5190 5928 1 chr2A.!!$F1 738
4 TraesCS2B01G043500 chr2A 14706534 14707301 767 False 743 743 84.9610 5190 5928 1 chr2A.!!$F2 738
5 TraesCS2B01G043500 chr2A 14725567 14726117 550 False 564 564 85.5870 5190 5734 1 chr2A.!!$F3 544
6 TraesCS2B01G043500 chr2A 14716183 14718687 2504 False 281 403 87.6275 5156 5609 2 chr2A.!!$F5 453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 740 0.179248 GAAGTCGAAGCTTTTCGCCG 60.179 55.000 0.00 0.00 43.55 6.46 F
1388 1814 0.322187 AAGGCGCCGGTAAGTCAATT 60.322 50.000 23.20 2.00 0.00 2.32 F
1708 2146 1.356527 CGGTTAGCTGTACGGCCAAC 61.357 60.000 24.51 24.51 34.15 3.77 F
2102 2553 1.544724 TATGACCTTTTGCACCTGGC 58.455 50.000 0.00 0.00 45.13 4.85 F
3289 3745 0.877743 GGAGCTCCAAACTTCTGCAC 59.122 55.000 28.43 0.00 35.64 4.57 F
4322 4789 1.227853 ACGGAACCTGTGTTGAGGC 60.228 57.895 0.00 0.00 36.46 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1494 1920 0.389296 ACGATCGAATGTGGCAACGA 60.389 50.000 24.34 9.03 42.51 3.85 R
2367 2822 0.737219 CAGAGTGCAGCTAATTGCCC 59.263 55.000 0.00 0.00 43.43 5.36 R
3268 3724 1.074405 TGCAGAAGTTTGGAGCTCCAT 59.926 47.619 35.42 21.33 46.97 3.41 R
3772 4237 3.125658 GGCCTGCTAATTTGCATTTTGTG 59.874 43.478 14.88 2.67 42.48 3.33 R
4843 5315 0.461548 TGAGTATCGAGCAGCCTTGG 59.538 55.000 0.00 0.00 38.61 3.61 R
5930 8514 0.040958 GCACGTTGAGCCAACTCTTG 60.041 55.000 13.76 9.89 43.85 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 81 3.817084 TGCTAGCATCAACAAGATATGGC 59.183 43.478 14.93 0.00 34.43 4.40
111 115 8.627403 CAACAGAAAGCAAGATATGGACAATAT 58.373 33.333 0.00 0.00 33.94 1.28
147 151 3.838565 TCTCCTGATCCTATCTCACACC 58.161 50.000 0.00 0.00 0.00 4.16
151 155 3.829601 CCTGATCCTATCTCACACCCTAC 59.170 52.174 0.00 0.00 0.00 3.18
161 165 0.902531 CACACCCTACGGAATGGACT 59.097 55.000 0.00 0.00 0.00 3.85
162 166 1.134788 CACACCCTACGGAATGGACTC 60.135 57.143 0.00 0.00 0.00 3.36
192 196 7.008266 CACATTGTTTTGTGTTCTTAGTCACAC 59.992 37.037 10.87 10.16 42.93 3.82
200 204 3.243301 TGTTCTTAGTCACACGAGACACC 60.243 47.826 9.34 0.00 40.98 4.16
213 217 2.307768 GAGACACCCCTACGATGATCA 58.692 52.381 0.00 0.00 0.00 2.92
221 225 4.585162 ACCCCTACGATGATCAACTCTTAG 59.415 45.833 0.00 1.25 0.00 2.18
224 228 4.979197 CCTACGATGATCAACTCTTAGCAC 59.021 45.833 0.00 0.00 0.00 4.40
256 576 4.159506 CCAACAAATCCGTCACCCATTATT 59.840 41.667 0.00 0.00 0.00 1.40
258 578 5.993748 ACAAATCCGTCACCCATTATTTT 57.006 34.783 0.00 0.00 0.00 1.82
260 580 4.385358 AATCCGTCACCCATTATTTTGC 57.615 40.909 0.00 0.00 0.00 3.68
263 583 2.491693 CCGTCACCCATTATTTTGCTGT 59.508 45.455 0.00 0.00 0.00 4.40
270 590 4.338118 ACCCATTATTTTGCTGTATCACCG 59.662 41.667 0.00 0.00 0.00 4.94
272 592 3.666883 TTATTTTGCTGTATCACCGCG 57.333 42.857 0.00 0.00 30.52 6.46
294 684 0.963355 TTCAGCATTACCCGGCCAAC 60.963 55.000 2.24 0.00 0.00 3.77
297 687 2.357056 CATTACCCGGCCAACCCA 59.643 61.111 2.24 0.00 0.00 4.51
303 693 1.453197 CCCGGCCAACCCATTAGAC 60.453 63.158 2.24 0.00 0.00 2.59
334 724 2.222508 CGACCATGTTAACGCGAAGAAG 60.223 50.000 15.93 0.00 0.00 2.85
348 738 2.828741 GAAGAAGTCGAAGCTTTTCGC 58.171 47.619 0.00 0.00 43.55 4.70
349 739 1.149148 AGAAGTCGAAGCTTTTCGCC 58.851 50.000 0.00 0.00 43.55 5.54
350 740 0.179248 GAAGTCGAAGCTTTTCGCCG 60.179 55.000 0.00 0.00 43.55 6.46
391 785 2.011349 CTGCGCTCGCGGTACTATG 61.011 63.158 9.73 0.00 45.51 2.23
392 786 3.395687 GCGCTCGCGGTACTATGC 61.396 66.667 13.56 0.00 40.19 3.14
394 788 1.371758 CGCTCGCGGTACTATGCAT 60.372 57.895 6.13 3.79 35.56 3.96
410 804 2.004017 TGCATATCCGAACAAACCGTC 58.996 47.619 0.00 0.00 0.00 4.79
414 808 1.734163 ATCCGAACAAACCGTCATCC 58.266 50.000 0.00 0.00 0.00 3.51
416 810 1.071071 TCCGAACAAACCGTCATCCTT 59.929 47.619 0.00 0.00 0.00 3.36
420 814 3.628017 GAACAAACCGTCATCCTTTGTG 58.372 45.455 0.00 0.00 37.99 3.33
426 820 3.399330 ACCGTCATCCTTTGTGTAGTTG 58.601 45.455 0.00 0.00 0.00 3.16
451 845 2.994995 ACGCCTCGGACATCCACA 60.995 61.111 0.00 0.00 35.14 4.17
457 851 1.407936 CTCGGACATCCACATCTCCT 58.592 55.000 0.00 0.00 35.14 3.69
464 858 2.442126 ACATCCACATCTCCTGCATCAT 59.558 45.455 0.00 0.00 0.00 2.45
487 882 1.070786 CCACCCGTTACAGCTGTGT 59.929 57.895 29.57 15.13 41.06 3.72
492 887 2.038033 ACCCGTTACAGCTGTGTTACAT 59.962 45.455 29.57 8.07 36.23 2.29
504 899 1.600013 GTGTTACATGCCGTGTCAACA 59.400 47.619 0.00 0.86 42.29 3.33
524 919 4.130118 ACACGAAGAACTCAATGCTTTCT 58.870 39.130 0.00 0.00 0.00 2.52
531 926 4.042187 AGAACTCAATGCTTTCTGTACCCT 59.958 41.667 0.00 0.00 0.00 4.34
543 940 3.680196 TACCCTCGCCAGTCCCCT 61.680 66.667 0.00 0.00 0.00 4.79
570 967 3.303928 CGTCCTCCGATAGCCCCC 61.304 72.222 0.00 0.00 39.56 5.40
571 968 2.122989 GTCCTCCGATAGCCCCCA 60.123 66.667 0.00 0.00 0.00 4.96
572 969 2.122989 TCCTCCGATAGCCCCCAC 60.123 66.667 0.00 0.00 0.00 4.61
586 983 2.424234 GCCCCCACTTATTATTCCAGCA 60.424 50.000 0.00 0.00 0.00 4.41
588 985 3.891366 CCCCCACTTATTATTCCAGCAAG 59.109 47.826 0.00 0.00 0.00 4.01
591 988 3.548818 CCACTTATTATTCCAGCAAGCGC 60.549 47.826 0.00 0.00 38.99 5.92
596 993 0.804364 TATTCCAGCAAGCGCAACAG 59.196 50.000 11.47 0.00 42.27 3.16
597 994 1.174712 ATTCCAGCAAGCGCAACAGT 61.175 50.000 11.47 0.00 42.27 3.55
608 1007 1.133025 GCGCAACAGTGGAAGCATTAT 59.867 47.619 0.30 0.00 0.00 1.28
610 1009 2.478370 CGCAACAGTGGAAGCATTATGG 60.478 50.000 0.00 0.00 0.00 2.74
707 1106 1.374758 CCCGCCTCTCATAATCGCC 60.375 63.158 0.00 0.00 0.00 5.54
728 1127 1.601903 GATGCGCGGGATAACAATTCA 59.398 47.619 8.83 0.00 0.00 2.57
740 1139 5.233476 GGATAACAATTCACGCATCGTCTTA 59.767 40.000 0.00 0.00 38.32 2.10
808 1207 5.442391 CCGAAAACCCTCTATAAATCCCAA 58.558 41.667 0.00 0.00 0.00 4.12
887 1299 3.748989 GCTCTTGAGTTGGTTTTCCCTCT 60.749 47.826 0.00 0.00 39.73 3.69
889 1301 3.716872 TCTTGAGTTGGTTTTCCCTCTCT 59.283 43.478 0.00 0.00 38.50 3.10
890 1302 4.166144 TCTTGAGTTGGTTTTCCCTCTCTT 59.834 41.667 0.00 0.00 38.50 2.85
1359 1785 2.693017 GCCAGGAGGAGAGGGAGA 59.307 66.667 0.00 0.00 36.89 3.71
1388 1814 0.322187 AAGGCGCCGGTAAGTCAATT 60.322 50.000 23.20 2.00 0.00 2.32
1432 1858 3.181479 TGCTGTTTCAGTCTGTTCGTAGT 60.181 43.478 0.00 0.00 33.43 2.73
1487 1913 6.276847 AGAAATCGTGATTGATCCTAGTGTC 58.723 40.000 0.00 0.00 0.00 3.67
1492 1918 4.113354 GTGATTGATCCTAGTGTCCGTTC 58.887 47.826 0.00 0.00 0.00 3.95
1493 1919 4.023980 TGATTGATCCTAGTGTCCGTTCT 58.976 43.478 0.00 0.00 0.00 3.01
1494 1920 4.466370 TGATTGATCCTAGTGTCCGTTCTT 59.534 41.667 0.00 0.00 0.00 2.52
1495 1921 4.451629 TTGATCCTAGTGTCCGTTCTTC 57.548 45.455 0.00 0.00 0.00 2.87
1496 1922 2.422479 TGATCCTAGTGTCCGTTCTTCG 59.578 50.000 0.00 0.00 39.52 3.79
1497 1923 1.901591 TCCTAGTGTCCGTTCTTCGT 58.098 50.000 0.00 0.00 37.94 3.85
1498 1924 2.233271 TCCTAGTGTCCGTTCTTCGTT 58.767 47.619 0.00 0.00 37.94 3.85
1519 1945 1.645034 CCACATTCGATCGTTCAGCT 58.355 50.000 15.94 0.00 0.00 4.24
1521 1947 2.262211 CACATTCGATCGTTCAGCTCA 58.738 47.619 15.94 0.00 0.00 4.26
1522 1948 2.028523 CACATTCGATCGTTCAGCTCAC 59.971 50.000 15.94 0.00 0.00 3.51
1551 1977 4.384547 CGTGAATTTCGATTGGGGTTTTTC 59.615 41.667 0.00 0.00 0.00 2.29
1557 1995 5.346181 TTCGATTGGGGTTTTTCTGTTTT 57.654 34.783 0.00 0.00 0.00 2.43
1558 1996 4.939271 TCGATTGGGGTTTTTCTGTTTTC 58.061 39.130 0.00 0.00 0.00 2.29
1559 1997 4.055360 CGATTGGGGTTTTTCTGTTTTCC 58.945 43.478 0.00 0.00 0.00 3.13
1560 1998 4.202212 CGATTGGGGTTTTTCTGTTTTCCT 60.202 41.667 0.00 0.00 0.00 3.36
1561 1999 4.479786 TTGGGGTTTTTCTGTTTTCCTG 57.520 40.909 0.00 0.00 0.00 3.86
1562 2000 3.445987 TGGGGTTTTTCTGTTTTCCTGT 58.554 40.909 0.00 0.00 0.00 4.00
1563 2001 4.611367 TGGGGTTTTTCTGTTTTCCTGTA 58.389 39.130 0.00 0.00 0.00 2.74
1564 2002 4.647399 TGGGGTTTTTCTGTTTTCCTGTAG 59.353 41.667 0.00 0.00 0.00 2.74
1565 2003 4.038763 GGGGTTTTTCTGTTTTCCTGTAGG 59.961 45.833 0.00 0.00 0.00 3.18
1566 2004 4.038763 GGGTTTTTCTGTTTTCCTGTAGGG 59.961 45.833 0.00 0.00 35.41 3.53
1567 2005 4.647853 GGTTTTTCTGTTTTCCTGTAGGGT 59.352 41.667 0.00 0.00 36.25 4.34
1568 2006 5.128171 GGTTTTTCTGTTTTCCTGTAGGGTT 59.872 40.000 0.00 0.00 36.25 4.11
1569 2007 6.351541 GGTTTTTCTGTTTTCCTGTAGGGTTT 60.352 38.462 0.00 0.00 36.25 3.27
1576 2014 5.131067 GTTTTCCTGTAGGGTTTCTTCAGT 58.869 41.667 0.00 0.00 38.67 3.41
1614 2052 4.082895 GCTGAATCAATTGACAGTGAGCTT 60.083 41.667 20.92 7.04 28.55 3.74
1628 2066 2.887152 GTGAGCTTGAATGGTCCTTTGT 59.113 45.455 0.00 0.00 33.93 2.83
1640 2078 3.073209 TGGTCCTTTGTGCAGTGGTAATA 59.927 43.478 0.00 0.00 0.00 0.98
1662 2100 5.815233 ATATCCAGTGAACTCTACCATGG 57.185 43.478 11.19 11.19 0.00 3.66
1708 2146 1.356527 CGGTTAGCTGTACGGCCAAC 61.357 60.000 24.51 24.51 34.15 3.77
1744 2182 4.445452 TCGCCGTGTTAGATTAAACTCT 57.555 40.909 0.00 0.00 0.00 3.24
1751 2189 5.107220 CGTGTTAGATTAAACTCTTGCGGTT 60.107 40.000 0.00 0.00 0.00 4.44
1753 2191 6.795593 GTGTTAGATTAAACTCTTGCGGTTTC 59.204 38.462 0.00 0.00 37.88 2.78
1755 2193 4.394729 AGATTAAACTCTTGCGGTTTCCA 58.605 39.130 0.00 0.00 37.88 3.53
1948 2398 6.270000 TCAGTATAACTGGCCATAGTAGCATT 59.730 38.462 5.51 0.00 45.94 3.56
1953 2403 5.630415 ACTGGCCATAGTAGCATTTTCTA 57.370 39.130 5.51 0.00 0.00 2.10
2043 2494 7.360438 CCTTGAATGTCTAAAGTGAGTTGTAGC 60.360 40.741 0.00 0.00 0.00 3.58
2058 2509 6.925718 TGAGTTGTAGCAGCATATAATGTCTC 59.074 38.462 0.00 0.00 0.00 3.36
2070 2521 9.584008 AGCATATAATGTCTCTGGATGATTTTT 57.416 29.630 0.00 0.00 0.00 1.94
2102 2553 1.544724 TATGACCTTTTGCACCTGGC 58.455 50.000 0.00 0.00 45.13 4.85
2146 2599 6.104146 TGGTACTGAACTTATAGTGCAACA 57.896 37.500 0.00 0.00 41.43 3.33
2148 2601 5.350640 GGTACTGAACTTATAGTGCAACACC 59.649 44.000 0.00 0.00 41.43 4.16
2166 2619 3.003275 ACACCGTGCACAGTTTTCTTATG 59.997 43.478 18.64 0.00 0.00 1.90
2223 2677 4.017126 CCTAACTCCATTTTCACCCCTTC 58.983 47.826 0.00 0.00 0.00 3.46
2325 2779 3.949754 TCCATTTCAAGACTCATGGATGC 59.050 43.478 0.00 0.00 40.28 3.91
2326 2780 3.952323 CCATTTCAAGACTCATGGATGCT 59.048 43.478 0.00 0.00 38.88 3.79
2589 3045 1.689959 CGAGCAAGAAAACCACATGC 58.310 50.000 0.00 0.00 37.28 4.06
2627 3083 5.618561 CGCTCTTGGTTACATTTAAGTCAC 58.381 41.667 0.00 0.00 0.00 3.67
2669 3125 3.825308 CGTCACTTTGGTCATTTGATGG 58.175 45.455 0.00 0.00 0.00 3.51
2797 3253 5.731591 ACAGTTCACTAGGTAAAGTATGCC 58.268 41.667 0.00 0.00 0.00 4.40
2817 3273 4.158025 TGCCGTTGTTCTTCCAAAGTTAAA 59.842 37.500 0.00 0.00 0.00 1.52
2959 3415 5.338632 TGAGATACTGGAGGTCTGGTTTAA 58.661 41.667 0.00 0.00 0.00 1.52
2965 3421 9.877178 GATACTGGAGGTCTGGTTTAATATATG 57.123 37.037 0.00 0.00 0.00 1.78
3000 3456 2.104792 TGCTTTGTACTGTCTCAGCCTT 59.895 45.455 0.00 0.00 34.37 4.35
3047 3503 8.946085 CATTGTCTGGAGTTTAGTGCTTTAATA 58.054 33.333 0.00 0.00 0.00 0.98
3150 3606 8.608185 TTAATTGAAAAGGGCCTGAAGAATAT 57.392 30.769 6.92 0.00 0.00 1.28
3185 3641 1.901591 AGTGTCCCATGTTTCTGCTG 58.098 50.000 0.00 0.00 0.00 4.41
3205 3661 5.538053 TGCTGTTAATTCATTTTCCCTGTCA 59.462 36.000 0.00 0.00 0.00 3.58
3261 3717 2.427095 GGGATTTGACATGTTACTGCCC 59.573 50.000 0.00 5.54 0.00 5.36
3268 3724 1.985159 ACATGTTACTGCCCAAGGAGA 59.015 47.619 0.00 0.00 0.00 3.71
3289 3745 0.877743 GGAGCTCCAAACTTCTGCAC 59.122 55.000 28.43 0.00 35.64 4.57
3383 3839 6.763303 TGCTTTATATACATACACTGTGCG 57.237 37.500 7.90 0.00 38.92 5.34
3384 3840 6.277605 TGCTTTATATACATACACTGTGCGT 58.722 36.000 7.90 5.57 38.92 5.24
3479 3935 9.515226 TCTACAGTTGCATTTAGTTTCCTAATT 57.485 29.630 0.00 0.00 33.27 1.40
3522 3978 1.973281 ATGGGTGTCGCAGCAAAGG 60.973 57.895 10.37 0.00 33.07 3.11
3543 3999 4.595781 AGGGTTTCTGTAGTGAATGGTGTA 59.404 41.667 0.00 0.00 0.00 2.90
3798 4263 2.450867 TGCAAATTAGCAGGCCCATA 57.549 45.000 0.00 0.00 40.11 2.74
3980 4446 4.082787 ACAACAAAAATACCTGATCGCTGG 60.083 41.667 0.00 0.00 38.92 4.85
4129 4595 4.745620 GCTACAATCAACCGAGTCCTTATC 59.254 45.833 0.00 0.00 0.00 1.75
4197 4664 8.064336 GTAAGATTCCTCACTTACAGGTAAGA 57.936 38.462 22.31 4.09 43.90 2.10
4283 4750 1.489649 CTGATTGCAGGGATCCACTCT 59.510 52.381 15.23 0.00 38.51 3.24
4294 4761 6.064060 CAGGGATCCACTCTTATTGCAATAA 58.936 40.000 26.14 26.14 0.00 1.40
4322 4789 1.227853 ACGGAACCTGTGTTGAGGC 60.228 57.895 0.00 0.00 36.46 4.70
4385 4857 5.791336 TGTGGTTATAGCTGATCGATCTT 57.209 39.130 25.02 13.49 0.00 2.40
4389 4861 6.926272 GTGGTTATAGCTGATCGATCTTTCTT 59.074 38.462 25.02 10.63 0.00 2.52
4390 4862 6.925718 TGGTTATAGCTGATCGATCTTTCTTG 59.074 38.462 25.02 9.94 0.00 3.02
4409 4881 6.603237 TCTTGTTGTTGACACTACTTCATG 57.397 37.500 0.00 0.00 38.18 3.07
4785 5257 4.334759 CGATGTCTGGCATTCTGAAAATCT 59.665 41.667 0.00 0.00 38.06 2.40
4843 5315 2.084546 GGCATCACAGACCCAACTAAC 58.915 52.381 0.00 0.00 0.00 2.34
4915 5387 0.894835 TTACTGGCTCGCATCTGACA 59.105 50.000 0.00 0.00 0.00 3.58
4956 5428 1.004745 ACATGGGCCACTTAGACTTGG 59.995 52.381 9.28 0.00 35.81 3.61
5193 5665 2.236146 CAGGATGGTTGTAGCTGGTACA 59.764 50.000 15.14 15.14 40.06 2.90
5423 5906 3.550437 CAACCTAGATTGCTGGTAGCT 57.450 47.619 2.24 0.00 42.97 3.32
5439 5922 6.712547 GCTGGTAGCTTATCAATAAAGGTCAT 59.287 38.462 0.00 0.00 38.45 3.06
5441 5924 9.125026 CTGGTAGCTTATCAATAAAGGTCATTT 57.875 33.333 0.00 0.00 36.22 2.32
5462 5945 7.884877 TCATTTCTTCATACTGATCACTGGTTT 59.115 33.333 0.00 0.00 0.00 3.27
5463 5946 7.439157 TTTCTTCATACTGATCACTGGTTTG 57.561 36.000 0.00 0.00 0.00 2.93
5524 8064 9.747898 TTATCTTAAATTCTGTTCCAGCCTTTA 57.252 29.630 0.00 0.00 0.00 1.85
5555 8095 1.079256 TGGGCTCCTGTGTAGCTCT 59.921 57.895 0.00 0.00 41.27 4.09
5577 8117 1.877443 GTTGTACCGTTCATTGGTGCT 59.123 47.619 2.10 0.00 41.98 4.40
5580 8120 0.878416 TACCGTTCATTGGTGCTTGC 59.122 50.000 0.00 0.00 40.73 4.01
5619 8159 4.009675 TGCCTGTTTCCATATCTTGACAC 58.990 43.478 0.00 0.00 0.00 3.67
5620 8160 4.009675 GCCTGTTTCCATATCTTGACACA 58.990 43.478 0.00 0.00 0.00 3.72
5642 8182 1.025812 ATCTTCTCGACGCCTACAGG 58.974 55.000 0.00 0.00 38.53 4.00
5643 8183 0.322277 TCTTCTCGACGCCTACAGGT 60.322 55.000 0.00 0.00 37.57 4.00
5646 8186 1.805945 CTCGACGCCTACAGGTTGC 60.806 63.158 0.00 0.00 37.57 4.17
5647 8187 2.048597 CGACGCCTACAGGTTGCA 60.049 61.111 0.00 0.00 37.57 4.08
5669 8241 5.294060 GCATTTTTGTTTCCATGTGTTGAGT 59.706 36.000 0.00 0.00 0.00 3.41
5739 8320 7.172703 TCTCGGAAGAAAGAAAAATGAAGTACC 59.827 37.037 0.00 0.00 41.32 3.34
5820 8401 9.948964 TTTCAGAAAGAGATGATCAATTGTCTA 57.051 29.630 5.13 0.00 0.00 2.59
5821 8402 9.948964 TTCAGAAAGAGATGATCAATTGTCTAA 57.051 29.630 5.13 0.00 0.00 2.10
5833 8414 5.868257 TCAATTGTCTAATCGCATTCACAC 58.132 37.500 5.13 0.00 0.00 3.82
5846 8427 2.121291 TTCACACAACTGGCAACTCA 57.879 45.000 0.00 0.00 37.61 3.41
5848 8429 2.653726 TCACACAACTGGCAACTCATT 58.346 42.857 0.00 0.00 37.61 2.57
5851 8432 3.067180 CACACAACTGGCAACTCATTTCT 59.933 43.478 0.00 0.00 37.61 2.52
5856 8437 3.416156 ACTGGCAACTCATTTCTCCTTC 58.584 45.455 0.00 0.00 37.61 3.46
5881 8462 5.459107 CCGAAGATAACTCCATAACTTGTCG 59.541 44.000 0.00 0.00 0.00 4.35
5913 8497 7.437748 AGAATACTATTTCTTGGATCTCGGTG 58.562 38.462 0.00 0.00 31.94 4.94
5929 8513 2.485266 GGTGCCAACCATATAAACGC 57.515 50.000 0.00 0.00 46.75 4.84
5930 8514 1.066454 GGTGCCAACCATATAAACGCC 59.934 52.381 0.00 0.00 46.75 5.68
5931 8515 1.746220 GTGCCAACCATATAAACGCCA 59.254 47.619 0.00 0.00 0.00 5.69
5932 8516 2.164624 GTGCCAACCATATAAACGCCAA 59.835 45.455 0.00 0.00 0.00 4.52
5933 8517 2.425312 TGCCAACCATATAAACGCCAAG 59.575 45.455 0.00 0.00 0.00 3.61
5934 8518 2.685897 GCCAACCATATAAACGCCAAGA 59.314 45.455 0.00 0.00 0.00 3.02
5935 8519 3.243068 GCCAACCATATAAACGCCAAGAG 60.243 47.826 0.00 0.00 0.00 2.85
5936 8520 3.945285 CCAACCATATAAACGCCAAGAGT 59.055 43.478 0.00 0.00 0.00 3.24
5937 8521 4.398044 CCAACCATATAAACGCCAAGAGTT 59.602 41.667 0.00 0.00 0.00 3.01
5938 8522 5.331902 CAACCATATAAACGCCAAGAGTTG 58.668 41.667 0.00 0.00 31.43 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 54 3.689347 TCTTGTTGATGCTAGCAACCAT 58.311 40.909 23.54 4.55 43.71 3.55
51 55 3.138884 TCTTGTTGATGCTAGCAACCA 57.861 42.857 23.54 19.23 43.71 3.67
52 56 5.278169 CCATATCTTGTTGATGCTAGCAACC 60.278 44.000 23.54 16.78 43.71 3.77
53 57 5.755813 CCATATCTTGTTGATGCTAGCAAC 58.244 41.667 23.54 20.21 44.40 4.17
54 58 4.276678 GCCATATCTTGTTGATGCTAGCAA 59.723 41.667 23.54 2.55 36.65 3.91
55 59 3.817084 GCCATATCTTGTTGATGCTAGCA 59.183 43.478 21.85 21.85 36.65 3.49
58 62 4.436113 TGGCCATATCTTGTTGATGCTA 57.564 40.909 0.00 0.00 36.65 3.49
59 63 3.301794 TGGCCATATCTTGTTGATGCT 57.698 42.857 0.00 0.00 36.65 3.79
60 64 4.595762 ATTGGCCATATCTTGTTGATGC 57.404 40.909 6.09 0.00 36.65 3.91
61 65 5.510179 GGGAATTGGCCATATCTTGTTGATG 60.510 44.000 6.09 0.00 36.65 3.07
63 67 3.960102 GGGAATTGGCCATATCTTGTTGA 59.040 43.478 6.09 0.00 0.00 3.18
64 68 3.705579 TGGGAATTGGCCATATCTTGTTG 59.294 43.478 6.09 0.00 0.00 3.33
77 81 3.321682 TCTTGCTTTCTGTTGGGAATTGG 59.678 43.478 0.00 0.00 0.00 3.16
151 155 2.511600 GTGCGGGAGTCCATTCCG 60.512 66.667 12.30 6.34 45.84 4.30
161 165 3.955291 CACAAAACAATGTGCGGGA 57.045 47.368 0.00 0.00 43.67 5.14
192 196 1.267261 GATCATCGTAGGGGTGTCTCG 59.733 57.143 0.00 0.00 0.00 4.04
200 204 4.038042 TGCTAAGAGTTGATCATCGTAGGG 59.962 45.833 16.22 4.18 30.91 3.53
213 217 5.499004 TGGGATGTAAAGTGCTAAGAGTT 57.501 39.130 0.00 0.00 0.00 3.01
221 225 4.494484 GGATTTGTTGGGATGTAAAGTGC 58.506 43.478 0.00 0.00 0.00 4.40
224 228 4.457603 TGACGGATTTGTTGGGATGTAAAG 59.542 41.667 0.00 0.00 0.00 1.85
256 576 0.037697 AGACGCGGTGATACAGCAAA 60.038 50.000 12.47 0.00 39.28 3.68
258 578 0.457853 GAAGACGCGGTGATACAGCA 60.458 55.000 12.47 0.00 39.28 4.41
260 580 1.550065 CTGAAGACGCGGTGATACAG 58.450 55.000 12.47 8.39 0.00 2.74
263 583 0.459899 ATGCTGAAGACGCGGTGATA 59.540 50.000 12.47 0.00 0.00 2.15
270 590 1.429148 CCGGGTAATGCTGAAGACGC 61.429 60.000 0.00 0.00 0.00 5.19
272 592 1.095807 GGCCGGGTAATGCTGAAGAC 61.096 60.000 2.18 0.00 0.00 3.01
294 684 6.697395 TGGTCGATATTACATGTCTAATGGG 58.303 40.000 0.00 0.00 0.00 4.00
303 693 6.296605 GCGTTAACATGGTCGATATTACATG 58.703 40.000 6.39 12.34 44.61 3.21
348 738 1.243342 TGTACGTCCACCCTGTACGG 61.243 60.000 0.00 0.00 40.97 4.02
349 739 0.813184 ATGTACGTCCACCCTGTACG 59.187 55.000 0.00 0.00 40.97 3.67
350 740 2.028748 ACAATGTACGTCCACCCTGTAC 60.029 50.000 0.00 0.00 39.08 2.90
364 754 1.682867 CGCGAGCGCAGAACAATGTA 61.683 55.000 11.47 0.00 42.06 2.29
365 755 2.863153 GCGAGCGCAGAACAATGT 59.137 55.556 11.47 0.00 41.49 2.71
367 757 2.829043 TACCGCGAGCGCAGAACAAT 62.829 55.000 11.47 0.00 42.06 2.71
369 759 4.045771 TACCGCGAGCGCAGAACA 62.046 61.111 11.47 0.00 42.06 3.18
391 785 2.004017 TGACGGTTTGTTCGGATATGC 58.996 47.619 0.00 0.00 0.00 3.14
392 786 3.247648 GGATGACGGTTTGTTCGGATATG 59.752 47.826 0.00 0.00 0.00 1.78
394 788 2.498481 AGGATGACGGTTTGTTCGGATA 59.502 45.455 0.00 0.00 0.00 2.59
410 804 2.159841 CGACGCAACTACACAAAGGATG 60.160 50.000 0.00 0.00 0.00 3.51
414 808 0.110823 GGCGACGCAACTACACAAAG 60.111 55.000 23.09 0.00 0.00 2.77
416 810 1.227292 TGGCGACGCAACTACACAA 60.227 52.632 23.09 0.00 0.00 3.33
437 831 0.390860 GGAGATGTGGATGTCCGAGG 59.609 60.000 0.00 0.00 39.43 4.63
442 836 2.158856 TGATGCAGGAGATGTGGATGTC 60.159 50.000 0.00 0.00 0.00 3.06
451 845 1.374190 GCCGGATGATGCAGGAGAT 59.626 57.895 5.05 0.00 0.00 2.75
457 851 4.504596 GGGTGGCCGGATGATGCA 62.505 66.667 5.05 0.00 0.00 3.96
464 858 3.697747 CTGTAACGGGTGGCCGGA 61.698 66.667 5.05 0.00 37.53 5.14
477 872 1.001520 ACGGCATGTAACACAGCTGTA 59.998 47.619 21.20 3.40 38.83 2.74
479 874 0.166597 CACGGCATGTAACACAGCTG 59.833 55.000 13.48 13.48 35.88 4.24
504 899 4.130118 ACAGAAAGCATTGAGTTCTTCGT 58.870 39.130 0.00 0.00 29.10 3.85
507 902 4.762251 GGGTACAGAAAGCATTGAGTTCTT 59.238 41.667 0.00 0.00 29.10 2.52
524 919 2.682494 GGGACTGGCGAGGGTACA 60.682 66.667 0.00 0.00 0.00 2.90
543 940 2.042230 GGAGGACGGCTAAGGGGA 60.042 66.667 0.00 0.00 0.00 4.81
570 967 3.065233 TGCGCTTGCTGGAATAATAAGTG 59.935 43.478 9.73 0.00 40.12 3.16
571 968 3.278574 TGCGCTTGCTGGAATAATAAGT 58.721 40.909 9.73 0.00 40.12 2.24
572 969 3.969117 TGCGCTTGCTGGAATAATAAG 57.031 42.857 9.73 0.00 40.12 1.73
586 983 1.174712 ATGCTTCCACTGTTGCGCTT 61.175 50.000 9.73 0.00 0.00 4.68
588 985 0.521291 TAATGCTTCCACTGTTGCGC 59.479 50.000 0.00 0.00 0.00 6.09
591 988 2.756760 AGCCATAATGCTTCCACTGTTG 59.243 45.455 0.00 0.00 38.85 3.33
625 1024 4.262808 CCATTGGAGGTTTAAATGTTGCCA 60.263 41.667 0.00 0.00 30.84 4.92
646 1045 1.134907 GGAATTCGACCGAGCTTACCA 60.135 52.381 0.00 0.00 0.00 3.25
668 1067 3.723348 GAGGCGCGCGTTTCCTTT 61.723 61.111 32.35 9.08 0.00 3.11
686 1085 0.389166 CGATTATGAGAGGCGGGCTC 60.389 60.000 22.73 22.73 0.00 4.70
707 1106 0.586319 AATTGTTATCCCGCGCATCG 59.414 50.000 8.75 0.00 38.08 3.84
715 1114 2.612212 ACGATGCGTGAATTGTTATCCC 59.388 45.455 0.00 0.00 39.18 3.85
723 1122 1.323534 GCGTAAGACGATGCGTGAATT 59.676 47.619 2.65 0.00 46.05 2.17
740 1139 2.050351 CGAGATTATCCGCGGCGT 60.050 61.111 23.51 14.55 0.00 5.68
887 1299 1.273896 GGGAAGGAGGAGGGAAGAAGA 60.274 57.143 0.00 0.00 0.00 2.87
889 1301 0.253207 GGGGAAGGAGGAGGGAAGAA 60.253 60.000 0.00 0.00 0.00 2.52
890 1302 1.396594 GGGGAAGGAGGAGGGAAGA 59.603 63.158 0.00 0.00 0.00 2.87
1359 1785 4.660938 GGCGCCTTGGACTTGGGT 62.661 66.667 22.15 0.00 0.00 4.51
1432 1858 1.771073 CGCAGGATCGCCGCAATTAA 61.771 55.000 0.00 0.00 39.96 1.40
1492 1918 1.267038 CGATCGAATGTGGCAACGAAG 60.267 52.381 10.26 5.69 38.22 3.79
1493 1919 0.718904 CGATCGAATGTGGCAACGAA 59.281 50.000 10.26 0.00 38.22 3.85
1494 1920 0.389296 ACGATCGAATGTGGCAACGA 60.389 50.000 24.34 9.03 42.51 3.85
1495 1921 0.442310 AACGATCGAATGTGGCAACG 59.558 50.000 24.34 0.00 42.51 4.10
1496 1922 1.463056 TGAACGATCGAATGTGGCAAC 59.537 47.619 24.34 0.00 0.00 4.17
1497 1923 1.731709 CTGAACGATCGAATGTGGCAA 59.268 47.619 24.34 0.00 0.00 4.52
1498 1924 1.358877 CTGAACGATCGAATGTGGCA 58.641 50.000 24.34 7.48 0.00 4.92
1522 1948 2.304516 AATCGAAATTCACGGCGCCG 62.305 55.000 44.88 44.88 46.03 6.46
1551 1977 5.130350 TGAAGAAACCCTACAGGAAAACAG 58.870 41.667 0.00 0.00 39.89 3.16
1557 1995 5.399991 TCTTACTGAAGAAACCCTACAGGA 58.600 41.667 0.00 0.00 38.80 3.86
1558 1996 5.246429 ACTCTTACTGAAGAAACCCTACAGG 59.754 44.000 0.00 0.00 41.23 4.00
1559 1997 6.347859 ACTCTTACTGAAGAAACCCTACAG 57.652 41.667 0.00 0.00 41.23 2.74
1560 1998 6.742559 AACTCTTACTGAAGAAACCCTACA 57.257 37.500 0.00 0.00 41.23 2.74
1561 1999 7.385478 CAGAAACTCTTACTGAAGAAACCCTAC 59.615 40.741 0.00 0.00 41.23 3.18
1562 2000 7.442656 CAGAAACTCTTACTGAAGAAACCCTA 58.557 38.462 0.00 0.00 41.23 3.53
1563 2001 6.292150 CAGAAACTCTTACTGAAGAAACCCT 58.708 40.000 0.00 0.00 41.23 4.34
1564 2002 5.049336 GCAGAAACTCTTACTGAAGAAACCC 60.049 44.000 0.00 0.00 41.23 4.11
1565 2003 5.760743 AGCAGAAACTCTTACTGAAGAAACC 59.239 40.000 0.00 0.00 41.23 3.27
1566 2004 6.852858 AGCAGAAACTCTTACTGAAGAAAC 57.147 37.500 0.00 0.00 41.23 2.78
1567 2005 6.647067 GCTAGCAGAAACTCTTACTGAAGAAA 59.353 38.462 10.63 0.00 41.23 2.52
1568 2006 6.015010 AGCTAGCAGAAACTCTTACTGAAGAA 60.015 38.462 18.83 0.00 41.23 2.52
1569 2007 5.478679 AGCTAGCAGAAACTCTTACTGAAGA 59.521 40.000 18.83 0.00 39.47 2.87
1576 2014 6.286240 TGATTCAGCTAGCAGAAACTCTTA 57.714 37.500 24.09 5.41 0.00 2.10
1614 2052 1.955778 CACTGCACAAAGGACCATTCA 59.044 47.619 0.00 0.00 0.00 2.57
1628 2066 6.099701 AGTTCACTGGATATATTACCACTGCA 59.900 38.462 0.00 0.00 32.44 4.41
1640 2078 4.040952 GCCATGGTAGAGTTCACTGGATAT 59.959 45.833 14.67 0.00 0.00 1.63
1656 2094 0.611896 GTGTTGCCCTTAGCCATGGT 60.612 55.000 14.67 2.69 42.71 3.55
1662 2100 3.081804 ACATTACAGTGTTGCCCTTAGC 58.918 45.455 0.00 0.00 44.14 3.09
1744 2182 2.011540 GGTTTGTTTGGAAACCGCAA 57.988 45.000 0.00 0.00 44.14 4.85
1751 2189 1.754226 GGAGTGCAGGTTTGTTTGGAA 59.246 47.619 0.00 0.00 0.00 3.53
1753 2191 1.110442 TGGAGTGCAGGTTTGTTTGG 58.890 50.000 0.00 0.00 0.00 3.28
1755 2193 2.564947 TGTTTGGAGTGCAGGTTTGTTT 59.435 40.909 0.00 0.00 0.00 2.83
1948 2398 6.429692 CACCACTCCAAACATACACATAGAAA 59.570 38.462 0.00 0.00 0.00 2.52
1953 2403 4.072131 GTCACCACTCCAAACATACACAT 58.928 43.478 0.00 0.00 0.00 3.21
2043 2494 8.563123 AAATCATCCAGAGACATTATATGCTG 57.437 34.615 0.00 0.00 0.00 4.41
2058 2509 3.887716 CCCTCAGCCTAAAAATCATCCAG 59.112 47.826 0.00 0.00 0.00 3.86
2102 2553 5.600484 ACCAGGACAGTCTTATCTCATAAGG 59.400 44.000 0.00 0.00 41.94 2.69
2146 2599 3.472652 TCATAAGAAAACTGTGCACGGT 58.527 40.909 25.75 25.75 36.96 4.83
2166 2619 7.702348 ACTGCAAAAACAGAGTTGACTATTTTC 59.298 33.333 0.00 0.00 40.25 2.29
2223 2677 3.496130 CAGCAAGTATAAGCCCTCATTCG 59.504 47.826 0.00 0.00 0.00 3.34
2276 2730 2.807967 TGCTGTGCTAACTTGCTAACTG 59.192 45.455 0.00 0.00 0.00 3.16
2367 2822 0.737219 CAGAGTGCAGCTAATTGCCC 59.263 55.000 0.00 0.00 43.43 5.36
2589 3045 1.741706 AGAGCGCACCTTCAATTGATG 59.258 47.619 11.47 11.57 0.00 3.07
2627 3083 8.365210 GTGACGCACATCAAATATTTTGTAAAG 58.635 33.333 5.42 3.78 34.08 1.85
2641 3097 1.225855 GACCAAAGTGACGCACATCA 58.774 50.000 11.58 0.00 36.74 3.07
2817 3273 7.436118 AGCAACAAACATACATCATCACTTTT 58.564 30.769 0.00 0.00 0.00 2.27
3150 3606 4.312443 GGACACTTACTTCCAACGAATCA 58.688 43.478 0.00 0.00 0.00 2.57
3185 3641 8.000780 AGCTATGACAGGGAAAATGAATTAAC 57.999 34.615 0.00 0.00 0.00 2.01
3268 3724 1.074405 TGCAGAAGTTTGGAGCTCCAT 59.926 47.619 35.42 21.33 46.97 3.41
3289 3745 8.399425 CAGTTGAGTAGTATAGTGTACCTTCAG 58.601 40.741 0.00 0.00 0.00 3.02
3522 3978 6.537660 GGTATACACCATTCACTACAGAAACC 59.462 42.308 5.01 0.00 45.04 3.27
3543 3999 5.227569 TGCATCCACTAAATCATCGGTAT 57.772 39.130 0.00 0.00 0.00 2.73
3631 4087 6.374333 TGTGCTTTATTCCTCTGGTTATGTTC 59.626 38.462 0.00 0.00 0.00 3.18
3634 4090 6.949352 ATGTGCTTTATTCCTCTGGTTATG 57.051 37.500 0.00 0.00 0.00 1.90
3772 4237 3.125658 GGCCTGCTAATTTGCATTTTGTG 59.874 43.478 14.88 2.67 42.48 3.33
4129 4595 9.449719 AAGATACAACCACCTAAACAGAAATAG 57.550 33.333 0.00 0.00 0.00 1.73
4305 4772 0.951040 GAGCCTCAACACAGGTTCCG 60.951 60.000 0.00 0.00 37.73 4.30
4322 4789 3.862642 GCTTACCGCATTAGGATCTGGAG 60.863 52.174 0.00 0.00 38.92 3.86
4347 4814 2.026822 ACCACATAGCTGAAAGGTCAGG 60.027 50.000 0.00 0.00 44.61 3.86
4385 4857 6.597672 ACATGAAGTAGTGTCAACAACAAGAA 59.402 34.615 0.00 0.00 40.31 2.52
4389 4861 5.756347 GGTACATGAAGTAGTGTCAACAACA 59.244 40.000 0.00 0.00 32.19 3.33
4390 4862 5.756347 TGGTACATGAAGTAGTGTCAACAAC 59.244 40.000 0.00 0.00 32.19 3.32
4409 4881 3.324846 TGCAGATGTCCATATCCTGGTAC 59.675 47.826 0.00 0.00 46.08 3.34
4785 5257 5.897250 TCCTTACATCAGTATCTGGCAGTAA 59.103 40.000 15.27 0.54 31.51 2.24
4843 5315 0.461548 TGAGTATCGAGCAGCCTTGG 59.538 55.000 0.00 0.00 38.61 3.61
4885 5357 2.286294 CGAGCCAGTAATCAGCATCAAC 59.714 50.000 0.00 0.00 0.00 3.18
4886 5358 2.554142 CGAGCCAGTAATCAGCATCAA 58.446 47.619 0.00 0.00 0.00 2.57
4915 5387 3.610040 TTCAGTCATGGTAGCGTCAAT 57.390 42.857 0.00 0.00 0.00 2.57
5193 5665 5.960811 CCATGTATAGATGTACCAGGAGGAT 59.039 44.000 8.88 0.00 38.69 3.24
5377 5858 1.902508 CAGGGTATACATCCGATGCCT 59.097 52.381 8.36 3.72 30.38 4.75
5524 8064 3.370231 GCCCACCGCAACCGAAAT 61.370 61.111 0.00 0.00 37.47 2.17
5555 8095 2.033550 GCACCAATGAACGGTACAACAA 59.966 45.455 0.00 0.00 34.02 2.83
5577 8117 0.764369 AGGAGACACAGGTGGAGCAA 60.764 55.000 4.24 0.00 34.19 3.91
5580 8120 0.321122 GCAAGGAGACACAGGTGGAG 60.321 60.000 4.24 0.00 34.19 3.86
5589 8129 0.843309 TGGAAACAGGCAAGGAGACA 59.157 50.000 0.00 0.00 35.01 3.41
5669 8241 6.350906 GGTGTACCCTTGTGCATACTAATAA 58.649 40.000 0.00 0.00 39.36 1.40
5753 8334 8.962679 AGCTGGTTCGGAATATTTTAAAATGTA 58.037 29.630 21.19 4.92 0.00 2.29
5771 8352 7.486232 GAAATGTTTCATAGCTAAAGCTGGTTC 59.514 37.037 14.71 2.72 43.08 3.62
5774 8355 6.855836 TGAAATGTTTCATAGCTAAAGCTGG 58.144 36.000 14.71 6.90 45.56 4.85
5820 8401 1.068333 GCCAGTTGTGTGAATGCGATT 60.068 47.619 0.00 0.00 0.00 3.34
5821 8402 0.523072 GCCAGTTGTGTGAATGCGAT 59.477 50.000 0.00 0.00 0.00 4.58
5833 8414 3.152341 AGGAGAAATGAGTTGCCAGTTG 58.848 45.455 0.00 0.00 0.00 3.16
5846 8427 5.163290 GGAGTTATCTTCGGGAAGGAGAAAT 60.163 44.000 8.46 0.83 38.88 2.17
5848 8429 3.705072 GGAGTTATCTTCGGGAAGGAGAA 59.295 47.826 8.46 0.00 38.88 2.87
5851 8432 3.110293 TGGAGTTATCTTCGGGAAGGA 57.890 47.619 8.46 0.00 38.88 3.36
5856 8437 5.671493 ACAAGTTATGGAGTTATCTTCGGG 58.329 41.667 0.00 0.00 0.00 5.14
5913 8497 2.685897 TCTTGGCGTTTATATGGTTGGC 59.314 45.455 0.00 0.00 0.00 4.52
5930 8514 0.040958 GCACGTTGAGCCAACTCTTG 60.041 55.000 13.76 9.89 43.85 3.02
5931 8515 0.179045 AGCACGTTGAGCCAACTCTT 60.179 50.000 13.76 0.00 43.85 2.85
5932 8516 1.447643 AGCACGTTGAGCCAACTCT 59.552 52.632 13.76 7.21 43.85 3.24
5933 8517 4.049393 AGCACGTTGAGCCAACTC 57.951 55.556 13.76 0.00 41.62 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.