Multiple sequence alignment - TraesCS2B01G042600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G042600 chr2B 100.000 5138 0 0 1 5138 19412407 19417544 0.000000e+00 9489.0
1 TraesCS2B01G042600 chr2B 76.974 1507 249 58 2399 3861 22725861 22727313 0.000000e+00 771.0
2 TraesCS2B01G042600 chr2B 76.809 677 112 30 2400 3051 20274226 20273570 6.370000e-89 339.0
3 TraesCS2B01G042600 chr2B 74.800 250 57 6 1749 1995 20274880 20274634 1.960000e-19 108.0
4 TraesCS2B01G042600 chr2B 73.092 249 63 4 1749 1995 22725211 22725457 9.170000e-13 86.1
5 TraesCS2B01G042600 chr2A 93.852 2082 76 17 471 2520 13255250 13253189 0.000000e+00 3088.0
6 TraesCS2B01G042600 chr2A 94.898 1568 51 11 2554 4102 13253188 13251631 0.000000e+00 2425.0
7 TraesCS2B01G042600 chr2A 85.947 491 63 5 4159 4647 13251631 13251145 2.120000e-143 520.0
8 TraesCS2B01G042600 chr2A 77.569 691 120 27 2381 3051 14532070 14532745 8.070000e-103 385.0
9 TraesCS2B01G042600 chr2A 85.581 215 21 5 4924 5138 13251138 13250934 3.120000e-52 217.0
10 TraesCS2B01G042600 chr2D 92.857 434 25 4 12 442 625377637 625378067 4.370000e-175 625.0
11 TraesCS2B01G042600 chr2D 75.082 610 126 22 4541 5132 364163494 364162893 1.420000e-65 261.0
12 TraesCS2B01G042600 chr2D 78.218 303 59 7 4834 5134 61284024 61284321 2.440000e-43 187.0
13 TraesCS2B01G042600 chr2D 79.054 148 30 1 4713 4860 95073300 95073154 3.270000e-17 100.0
14 TraesCS2B01G042600 chr2D 83.133 83 14 0 4693 4775 538242420 538242502 5.520000e-10 76.8
15 TraesCS2B01G042600 chr1D 93.112 421 26 1 15 432 56886792 56886372 9.460000e-172 614.0
16 TraesCS2B01G042600 chr1D 77.410 332 72 3 4807 5138 255485160 255484832 1.460000e-45 195.0
17 TraesCS2B01G042600 chr1D 83.133 83 14 0 4693 4775 451472401 451472483 5.520000e-10 76.8
18 TraesCS2B01G042600 chr3B 92.453 424 28 2 15 434 615635484 615635061 2.050000e-168 603.0
19 TraesCS2B01G042600 chr3B 84.234 222 28 5 4198 4412 764303297 764303076 5.210000e-50 209.0
20 TraesCS2B01G042600 chr3B 81.780 236 36 6 4186 4419 697169875 697169645 1.890000e-44 191.0
21 TraesCS2B01G042600 chr3B 82.063 223 32 5 4198 4412 225173171 225173393 3.160000e-42 183.0
22 TraesCS2B01G042600 chr3B 87.500 72 9 0 4696 4767 424849287 424849216 3.300000e-12 84.2
23 TraesCS2B01G042600 chr5D 91.943 422 32 2 12 433 486010947 486011366 1.590000e-164 590.0
24 TraesCS2B01G042600 chr5D 77.307 401 78 8 4740 5138 105028661 105029050 1.860000e-54 224.0
25 TraesCS2B01G042600 chr5D 82.273 220 31 6 4198 4412 438186634 438186850 3.160000e-42 183.0
26 TraesCS2B01G042600 chr7A 91.885 419 33 1 15 433 126758024 126757607 7.410000e-163 584.0
27 TraesCS2B01G042600 chr5A 90.284 422 38 1 15 433 214949032 214949453 2.700000e-152 549.0
28 TraesCS2B01G042600 chr3D 90.024 421 39 3 15 433 600642366 600641947 4.530000e-150 542.0
29 TraesCS2B01G042600 chr3D 84.337 83 13 0 4693 4775 480220854 480220936 1.190000e-11 82.4
30 TraesCS2B01G042600 chr6A 88.811 429 45 1 12 437 36382627 36383055 1.640000e-144 523.0
31 TraesCS2B01G042600 chr6A 83.408 223 28 6 4198 4412 169514772 169514993 1.130000e-46 198.0
32 TraesCS2B01G042600 chr1A 88.915 424 43 2 15 435 556663335 556662913 2.120000e-143 520.0
33 TraesCS2B01G042600 chr1A 83.099 213 28 5 4199 4404 494348879 494348668 2.440000e-43 187.0
34 TraesCS2B01G042600 chr1B 77.622 429 80 15 4709 5136 666561857 666561444 3.970000e-61 246.0
35 TraesCS2B01G042600 chr1B 82.456 228 32 4 4199 4418 532058941 532058714 5.250000e-45 193.0
36 TraesCS2B01G042600 chr1B 83.333 72 12 0 4696 4767 409502313 409502242 3.320000e-07 67.6
37 TraesCS2B01G042600 chr1B 86.207 58 8 0 4862 4919 155820284 155820227 4.290000e-06 63.9
38 TraesCS2B01G042600 chr7D 76.279 430 89 12 4709 5134 511279602 511279182 3.120000e-52 217.0
39 TraesCS2B01G042600 chr7D 75.362 276 67 1 4864 5138 151012512 151012237 1.160000e-26 132.0
40 TraesCS2B01G042600 chr4D 75.355 422 96 7 4713 5134 96154723 96155136 4.060000e-46 196.0
41 TraesCS2B01G042600 chr6D 82.883 222 29 6 4198 4412 131608727 131608946 1.890000e-44 191.0
42 TraesCS2B01G042600 chr6D 74.885 434 94 12 4704 5135 234417787 234418207 3.160000e-42 183.0
43 TraesCS2B01G042600 chr5B 76.884 199 39 4 4946 5138 216390296 216390099 7.040000e-19 106.0
44 TraesCS2B01G042600 chr5B 75.833 120 27 2 4861 4979 423354513 423354395 5.560000e-05 60.2
45 TraesCS2B01G042600 chr4B 79.808 104 12 8 4546 4645 389433582 389433484 3.320000e-07 67.6
46 TraesCS2B01G042600 chr3A 85.000 60 9 0 4862 4921 634491742 634491801 1.540000e-05 62.1
47 TraesCS2B01G042600 chr7B 81.967 61 11 0 4862 4922 98506084 98506024 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G042600 chr2B 19412407 19417544 5137 False 9489.00 9489 100.0000 1 5138 1 chr2B.!!$F1 5137
1 TraesCS2B01G042600 chr2B 22725211 22727313 2102 False 428.55 771 75.0330 1749 3861 2 chr2B.!!$F2 2112
2 TraesCS2B01G042600 chr2B 20273570 20274880 1310 True 223.50 339 75.8045 1749 3051 2 chr2B.!!$R1 1302
3 TraesCS2B01G042600 chr2A 13250934 13255250 4316 True 1562.50 3088 90.0695 471 5138 4 chr2A.!!$R1 4667
4 TraesCS2B01G042600 chr2A 14532070 14532745 675 False 385.00 385 77.5690 2381 3051 1 chr2A.!!$F1 670
5 TraesCS2B01G042600 chr2D 364162893 364163494 601 True 261.00 261 75.0820 4541 5132 1 chr2D.!!$R2 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 658 0.030235 CCTTGTGCATGCATGGATCG 59.970 55.0 25.64 16.03 36.21 3.69 F
2530 2590 0.029267 AGGAGAAGGCCCATCATCCT 60.029 55.0 15.50 15.50 32.31 3.24 F
3166 3274 0.107459 GAGTTCCAGGTGATGAGGGC 60.107 60.0 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2546 2606 0.251354 ACGTCTTCCATGCTGCTCAT 59.749 50.0 0.0 0.0 35.31 2.90 R
4082 4212 0.252012 TCCCCCGTTCCATGCAATTT 60.252 50.0 0.0 0.0 0.00 1.82 R
4855 5004 0.038526 AGTAGGTTTCTCGGCACACG 60.039 55.0 0.0 0.0 46.11 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.113617 CCGTCAGTGGAGGAGGAA 57.886 61.111 0.00 0.00 0.00 3.36
18 19 1.893786 CCGTCAGTGGAGGAGGAAG 59.106 63.158 0.00 0.00 0.00 3.46
19 20 0.612174 CCGTCAGTGGAGGAGGAAGA 60.612 60.000 0.00 0.00 0.00 2.87
20 21 0.814457 CGTCAGTGGAGGAGGAAGAG 59.186 60.000 0.00 0.00 0.00 2.85
21 22 1.190643 GTCAGTGGAGGAGGAAGAGG 58.809 60.000 0.00 0.00 0.00 3.69
22 23 1.084866 TCAGTGGAGGAGGAAGAGGA 58.915 55.000 0.00 0.00 0.00 3.71
23 24 1.433199 TCAGTGGAGGAGGAAGAGGAA 59.567 52.381 0.00 0.00 0.00 3.36
24 25 1.830477 CAGTGGAGGAGGAAGAGGAAG 59.170 57.143 0.00 0.00 0.00 3.46
25 26 1.719378 AGTGGAGGAGGAAGAGGAAGA 59.281 52.381 0.00 0.00 0.00 2.87
26 27 1.828595 GTGGAGGAGGAAGAGGAAGAC 59.171 57.143 0.00 0.00 0.00 3.01
27 28 1.719378 TGGAGGAGGAAGAGGAAGACT 59.281 52.381 0.00 0.00 0.00 3.24
28 29 2.107366 GGAGGAGGAAGAGGAAGACTG 58.893 57.143 0.00 0.00 0.00 3.51
29 30 1.480545 GAGGAGGAAGAGGAAGACTGC 59.519 57.143 0.00 0.00 0.00 4.40
30 31 1.203237 AGGAGGAAGAGGAAGACTGCA 60.203 52.381 0.00 0.00 0.00 4.41
31 32 1.836802 GGAGGAAGAGGAAGACTGCAT 59.163 52.381 0.00 0.00 0.00 3.96
32 33 2.419851 GGAGGAAGAGGAAGACTGCATG 60.420 54.545 0.00 0.00 0.00 4.06
33 34 2.235898 GAGGAAGAGGAAGACTGCATGT 59.764 50.000 0.00 0.00 0.00 3.21
34 35 3.445008 AGGAAGAGGAAGACTGCATGTA 58.555 45.455 0.00 0.00 0.00 2.29
35 36 3.196685 AGGAAGAGGAAGACTGCATGTAC 59.803 47.826 0.00 0.00 0.00 2.90
36 37 2.949451 AGAGGAAGACTGCATGTACG 57.051 50.000 0.00 0.00 0.00 3.67
37 38 1.478510 AGAGGAAGACTGCATGTACGG 59.521 52.381 0.00 0.00 0.00 4.02
38 39 0.537188 AGGAAGACTGCATGTACGGG 59.463 55.000 0.00 0.00 0.00 5.28
39 40 0.535335 GGAAGACTGCATGTACGGGA 59.465 55.000 0.00 0.00 0.00 5.14
40 41 1.471676 GGAAGACTGCATGTACGGGAG 60.472 57.143 4.64 4.64 0.00 4.30
41 42 0.537188 AAGACTGCATGTACGGGAGG 59.463 55.000 9.96 0.00 0.00 4.30
42 43 1.521681 GACTGCATGTACGGGAGGC 60.522 63.158 9.96 3.76 0.00 4.70
43 44 1.961180 GACTGCATGTACGGGAGGCT 61.961 60.000 9.96 0.00 0.00 4.58
44 45 0.686441 ACTGCATGTACGGGAGGCTA 60.686 55.000 9.96 0.00 0.00 3.93
45 46 0.032678 CTGCATGTACGGGAGGCTAG 59.967 60.000 0.00 0.00 0.00 3.42
46 47 0.396556 TGCATGTACGGGAGGCTAGA 60.397 55.000 0.00 0.00 0.00 2.43
47 48 0.032267 GCATGTACGGGAGGCTAGAC 59.968 60.000 0.00 0.00 0.00 2.59
48 49 1.693627 CATGTACGGGAGGCTAGACT 58.306 55.000 0.00 0.00 0.00 3.24
49 50 1.338337 CATGTACGGGAGGCTAGACTG 59.662 57.143 0.42 0.00 0.00 3.51
50 51 1.035932 TGTACGGGAGGCTAGACTGC 61.036 60.000 8.97 8.97 0.00 4.40
51 52 0.752376 GTACGGGAGGCTAGACTGCT 60.752 60.000 17.58 0.00 0.00 4.24
52 53 0.465824 TACGGGAGGCTAGACTGCTC 60.466 60.000 17.58 6.30 0.00 4.26
53 54 2.840066 CGGGAGGCTAGACTGCTCG 61.840 68.421 17.58 14.51 0.00 5.03
54 55 1.755008 GGGAGGCTAGACTGCTCGT 60.755 63.158 17.58 0.00 0.00 4.18
55 56 1.730451 GGGAGGCTAGACTGCTCGTC 61.730 65.000 17.58 0.00 43.17 4.20
62 63 2.431601 GACTGCTCGTCGCTGCTT 60.432 61.111 10.45 0.00 40.84 3.91
63 64 2.024319 GACTGCTCGTCGCTGCTTT 61.024 57.895 10.45 0.00 40.84 3.51
64 65 1.950098 GACTGCTCGTCGCTGCTTTC 61.950 60.000 10.45 4.52 40.84 2.62
65 66 3.064248 CTGCTCGTCGCTGCTTTCG 62.064 63.158 10.45 0.00 40.11 3.46
66 67 3.106407 GCTCGTCGCTGCTTTCGT 61.106 61.111 0.00 0.00 35.14 3.85
67 68 3.060663 GCTCGTCGCTGCTTTCGTC 62.061 63.158 0.00 0.00 35.14 4.20
68 69 2.430244 TCGTCGCTGCTTTCGTCC 60.430 61.111 0.00 0.00 0.00 4.79
69 70 2.430921 CGTCGCTGCTTTCGTCCT 60.431 61.111 0.00 0.00 0.00 3.85
70 71 2.437343 CGTCGCTGCTTTCGTCCTC 61.437 63.158 0.00 0.00 0.00 3.71
71 72 2.095252 GTCGCTGCTTTCGTCCTCC 61.095 63.158 0.00 0.00 0.00 4.30
72 73 2.048222 CGCTGCTTTCGTCCTCCA 60.048 61.111 0.00 0.00 0.00 3.86
73 74 1.667830 CGCTGCTTTCGTCCTCCAA 60.668 57.895 0.00 0.00 0.00 3.53
74 75 1.227999 CGCTGCTTTCGTCCTCCAAA 61.228 55.000 0.00 0.00 0.00 3.28
75 76 0.951558 GCTGCTTTCGTCCTCCAAAA 59.048 50.000 0.00 0.00 0.00 2.44
76 77 1.335051 GCTGCTTTCGTCCTCCAAAAC 60.335 52.381 0.00 0.00 0.00 2.43
77 78 1.266989 CTGCTTTCGTCCTCCAAAACC 59.733 52.381 0.00 0.00 0.00 3.27
78 79 1.314730 GCTTTCGTCCTCCAAAACCA 58.685 50.000 0.00 0.00 0.00 3.67
79 80 1.886542 GCTTTCGTCCTCCAAAACCAT 59.113 47.619 0.00 0.00 0.00 3.55
80 81 2.351738 GCTTTCGTCCTCCAAAACCATG 60.352 50.000 0.00 0.00 0.00 3.66
81 82 1.904287 TTCGTCCTCCAAAACCATGG 58.096 50.000 11.19 11.19 42.12 3.66
82 83 0.608035 TCGTCCTCCAAAACCATGGC 60.608 55.000 13.04 0.00 40.46 4.40
83 84 1.883021 GTCCTCCAAAACCATGGCG 59.117 57.895 13.04 0.00 40.46 5.69
84 85 1.304052 TCCTCCAAAACCATGGCGG 60.304 57.895 13.04 7.74 45.07 6.13
85 86 2.573340 CTCCAAAACCATGGCGGC 59.427 61.111 13.04 0.00 40.46 6.53
86 87 3.340953 CTCCAAAACCATGGCGGCG 62.341 63.158 13.04 0.51 40.46 6.46
87 88 4.433877 CCAAAACCATGGCGGCGG 62.434 66.667 13.04 3.85 39.03 6.13
144 145 2.434359 GGCGACGGAGGGAACAAG 60.434 66.667 0.00 0.00 0.00 3.16
145 146 2.342648 GCGACGGAGGGAACAAGT 59.657 61.111 0.00 0.00 0.00 3.16
146 147 1.737008 GCGACGGAGGGAACAAGTC 60.737 63.158 0.00 0.00 0.00 3.01
147 148 1.443872 CGACGGAGGGAACAAGTCG 60.444 63.158 1.99 1.99 43.25 4.18
148 149 1.962144 GACGGAGGGAACAAGTCGA 59.038 57.895 0.00 0.00 0.00 4.20
149 150 0.109226 GACGGAGGGAACAAGTCGAG 60.109 60.000 0.00 0.00 0.00 4.04
150 151 1.215647 CGGAGGGAACAAGTCGAGG 59.784 63.158 0.00 0.00 0.00 4.63
151 152 1.248785 CGGAGGGAACAAGTCGAGGA 61.249 60.000 0.00 0.00 0.00 3.71
152 153 0.533032 GGAGGGAACAAGTCGAGGAG 59.467 60.000 0.00 0.00 0.00 3.69
153 154 0.533032 GAGGGAACAAGTCGAGGAGG 59.467 60.000 0.00 0.00 0.00 4.30
154 155 0.114560 AGGGAACAAGTCGAGGAGGA 59.885 55.000 0.00 0.00 0.00 3.71
155 156 0.533032 GGGAACAAGTCGAGGAGGAG 59.467 60.000 0.00 0.00 0.00 3.69
156 157 0.533032 GGAACAAGTCGAGGAGGAGG 59.467 60.000 0.00 0.00 0.00 4.30
157 158 0.533032 GAACAAGTCGAGGAGGAGGG 59.467 60.000 0.00 0.00 0.00 4.30
158 159 0.905337 AACAAGTCGAGGAGGAGGGG 60.905 60.000 0.00 0.00 0.00 4.79
159 160 1.000486 CAAGTCGAGGAGGAGGGGA 60.000 63.158 0.00 0.00 0.00 4.81
160 161 1.040339 CAAGTCGAGGAGGAGGGGAG 61.040 65.000 0.00 0.00 0.00 4.30
161 162 2.123640 GTCGAGGAGGAGGGGAGG 60.124 72.222 0.00 0.00 0.00 4.30
162 163 2.286962 TCGAGGAGGAGGGGAGGA 60.287 66.667 0.00 0.00 0.00 3.71
163 164 2.197324 CGAGGAGGAGGGGAGGAG 59.803 72.222 0.00 0.00 0.00 3.69
164 165 2.387772 CGAGGAGGAGGGGAGGAGA 61.388 68.421 0.00 0.00 0.00 3.71
165 166 1.939082 CGAGGAGGAGGGGAGGAGAA 61.939 65.000 0.00 0.00 0.00 2.87
166 167 0.565674 GAGGAGGAGGGGAGGAGAAT 59.434 60.000 0.00 0.00 0.00 2.40
167 168 0.267356 AGGAGGAGGGGAGGAGAATG 59.733 60.000 0.00 0.00 0.00 2.67
168 169 0.766288 GGAGGAGGGGAGGAGAATGG 60.766 65.000 0.00 0.00 0.00 3.16
169 170 0.030603 GAGGAGGGGAGGAGAATGGT 60.031 60.000 0.00 0.00 0.00 3.55
170 171 0.327000 AGGAGGGGAGGAGAATGGTG 60.327 60.000 0.00 0.00 0.00 4.17
171 172 1.529309 GAGGGGAGGAGAATGGTGC 59.471 63.158 0.00 0.00 0.00 5.01
172 173 1.229951 AGGGGAGGAGAATGGTGCA 60.230 57.895 0.00 0.00 0.00 4.57
173 174 1.225704 GGGGAGGAGAATGGTGCAG 59.774 63.158 0.00 0.00 0.00 4.41
174 175 1.566298 GGGGAGGAGAATGGTGCAGT 61.566 60.000 0.00 0.00 0.00 4.40
175 176 0.393537 GGGAGGAGAATGGTGCAGTG 60.394 60.000 0.00 0.00 0.00 3.66
176 177 0.393537 GGAGGAGAATGGTGCAGTGG 60.394 60.000 0.00 0.00 0.00 4.00
177 178 0.393537 GAGGAGAATGGTGCAGTGGG 60.394 60.000 0.00 0.00 0.00 4.61
178 179 1.379044 GGAGAATGGTGCAGTGGGG 60.379 63.158 0.00 0.00 0.00 4.96
179 180 1.379044 GAGAATGGTGCAGTGGGGG 60.379 63.158 0.00 0.00 0.00 5.40
180 181 1.852157 AGAATGGTGCAGTGGGGGA 60.852 57.895 0.00 0.00 0.00 4.81
181 182 1.678970 GAATGGTGCAGTGGGGGAC 60.679 63.158 0.00 0.00 0.00 4.46
182 183 3.567579 AATGGTGCAGTGGGGGACG 62.568 63.158 0.00 0.00 0.00 4.79
184 185 3.948719 GGTGCAGTGGGGGACGAA 61.949 66.667 0.00 0.00 0.00 3.85
185 186 2.668550 GTGCAGTGGGGGACGAAC 60.669 66.667 0.00 0.00 0.00 3.95
186 187 3.948719 TGCAGTGGGGGACGAACC 61.949 66.667 0.00 0.00 38.08 3.62
188 189 4.388499 CAGTGGGGGACGAACCGG 62.388 72.222 0.00 0.00 40.11 5.28
189 190 4.948080 AGTGGGGGACGAACCGGT 62.948 66.667 0.00 0.00 40.11 5.28
190 191 4.692475 GTGGGGGACGAACCGGTG 62.692 72.222 8.52 0.00 40.11 4.94
212 213 2.107141 CGGACCGGATTGGAGAGC 59.893 66.667 9.46 0.00 42.00 4.09
213 214 2.107141 GGACCGGATTGGAGAGCG 59.893 66.667 9.46 0.00 42.00 5.03
214 215 2.107141 GACCGGATTGGAGAGCGG 59.893 66.667 9.46 0.00 42.00 5.52
215 216 4.162690 ACCGGATTGGAGAGCGGC 62.163 66.667 9.46 0.00 42.00 6.53
216 217 3.854669 CCGGATTGGAGAGCGGCT 61.855 66.667 0.00 0.00 42.00 5.52
217 218 2.279784 CGGATTGGAGAGCGGCTC 60.280 66.667 22.13 22.13 43.17 4.70
218 219 2.279784 GGATTGGAGAGCGGCTCG 60.280 66.667 23.15 0.00 44.91 5.03
219 220 2.496817 GATTGGAGAGCGGCTCGT 59.503 61.111 23.15 12.37 44.91 4.18
220 221 1.590259 GATTGGAGAGCGGCTCGTC 60.590 63.158 23.15 19.17 44.91 4.20
221 222 2.962697 GATTGGAGAGCGGCTCGTCC 62.963 65.000 27.43 27.43 44.91 4.79
222 223 4.742649 TGGAGAGCGGCTCGTCCT 62.743 66.667 30.68 16.26 44.91 3.85
223 224 2.516460 GGAGAGCGGCTCGTCCTA 60.516 66.667 27.13 0.00 44.91 2.94
224 225 2.548295 GGAGAGCGGCTCGTCCTAG 61.548 68.421 27.13 0.00 44.91 3.02
225 226 1.820481 GAGAGCGGCTCGTCCTAGT 60.820 63.158 23.15 4.83 35.36 2.57
226 227 1.778027 GAGAGCGGCTCGTCCTAGTC 61.778 65.000 23.15 10.46 35.36 2.59
227 228 2.045242 AGCGGCTCGTCCTAGTCA 60.045 61.111 0.00 0.00 0.00 3.41
228 229 2.054140 GAGCGGCTCGTCCTAGTCAG 62.054 65.000 15.09 0.00 0.00 3.51
229 230 2.409651 CGGCTCGTCCTAGTCAGC 59.590 66.667 0.00 0.00 0.00 4.26
230 231 2.409651 GGCTCGTCCTAGTCAGCG 59.590 66.667 0.00 0.00 32.26 5.18
231 232 2.278271 GCTCGTCCTAGTCAGCGC 60.278 66.667 0.00 0.00 0.00 5.92
232 233 2.023461 CTCGTCCTAGTCAGCGCG 59.977 66.667 0.00 0.00 0.00 6.86
233 234 4.175489 TCGTCCTAGTCAGCGCGC 62.175 66.667 26.66 26.66 0.00 6.86
317 318 6.764877 CGTCAATACGTATAAATCAGCCTT 57.235 37.500 8.83 0.00 44.21 4.35
318 319 7.173863 CGTCAATACGTATAAATCAGCCTTT 57.826 36.000 8.83 0.00 44.21 3.11
319 320 7.627340 CGTCAATACGTATAAATCAGCCTTTT 58.373 34.615 8.83 0.00 44.21 2.27
320 321 8.757789 CGTCAATACGTATAAATCAGCCTTTTA 58.242 33.333 8.83 0.00 44.21 1.52
322 323 8.770828 TCAATACGTATAAATCAGCCTTTTAGC 58.229 33.333 8.83 0.00 0.00 3.09
323 324 7.668525 ATACGTATAAATCAGCCTTTTAGCC 57.331 36.000 6.21 0.00 0.00 3.93
324 325 5.681639 ACGTATAAATCAGCCTTTTAGCCT 58.318 37.500 0.00 0.00 0.00 4.58
325 326 6.120220 ACGTATAAATCAGCCTTTTAGCCTT 58.880 36.000 0.00 0.00 0.00 4.35
326 327 6.602009 ACGTATAAATCAGCCTTTTAGCCTTT 59.398 34.615 0.00 0.00 0.00 3.11
327 328 7.122204 ACGTATAAATCAGCCTTTTAGCCTTTT 59.878 33.333 0.00 0.00 0.00 2.27
328 329 7.973944 CGTATAAATCAGCCTTTTAGCCTTTTT 59.026 33.333 0.00 0.00 0.00 1.94
348 349 5.557891 TTTTGCAAAAACCTGAACCAATG 57.442 34.783 21.94 0.00 0.00 2.82
349 350 3.902881 TGCAAAAACCTGAACCAATGT 57.097 38.095 0.00 0.00 0.00 2.71
350 351 4.213564 TGCAAAAACCTGAACCAATGTT 57.786 36.364 0.00 0.00 37.42 2.71
351 352 3.937706 TGCAAAAACCTGAACCAATGTTG 59.062 39.130 0.00 0.00 33.97 3.33
363 364 1.196808 CCAATGTTGGTACTGACACGC 59.803 52.381 3.58 0.00 43.43 5.34
364 365 1.870402 CAATGTTGGTACTGACACGCA 59.130 47.619 4.40 0.00 0.00 5.24
365 366 2.248280 ATGTTGGTACTGACACGCAA 57.752 45.000 4.40 0.00 0.00 4.85
366 367 2.025589 TGTTGGTACTGACACGCAAA 57.974 45.000 0.00 0.00 0.00 3.68
367 368 2.357075 TGTTGGTACTGACACGCAAAA 58.643 42.857 0.00 0.00 0.00 2.44
368 369 2.747989 TGTTGGTACTGACACGCAAAAA 59.252 40.909 0.00 0.00 0.00 1.94
369 370 3.378742 TGTTGGTACTGACACGCAAAAAT 59.621 39.130 0.00 0.00 0.00 1.82
370 371 4.142359 TGTTGGTACTGACACGCAAAAATT 60.142 37.500 0.00 0.00 0.00 1.82
371 372 5.066117 TGTTGGTACTGACACGCAAAAATTA 59.934 36.000 0.00 0.00 0.00 1.40
372 373 5.351233 TGGTACTGACACGCAAAAATTAG 57.649 39.130 0.00 0.00 0.00 1.73
373 374 4.156182 GGTACTGACACGCAAAAATTAGC 58.844 43.478 0.00 0.00 0.00 3.09
374 375 3.980646 ACTGACACGCAAAAATTAGCA 57.019 38.095 0.00 0.00 0.00 3.49
375 376 4.300189 ACTGACACGCAAAAATTAGCAA 57.700 36.364 0.00 0.00 0.00 3.91
376 377 4.870363 ACTGACACGCAAAAATTAGCAAT 58.130 34.783 0.00 0.00 0.00 3.56
377 378 4.917415 ACTGACACGCAAAAATTAGCAATC 59.083 37.500 0.00 0.00 0.00 2.67
378 379 3.911365 TGACACGCAAAAATTAGCAATCG 59.089 39.130 0.00 0.00 0.00 3.34
379 380 3.896122 ACACGCAAAAATTAGCAATCGT 58.104 36.364 0.00 0.00 0.00 3.73
380 381 4.216324 CACGCAAAAATTAGCAATCGTG 57.784 40.909 0.00 0.00 39.68 4.35
381 382 3.911365 CACGCAAAAATTAGCAATCGTGA 59.089 39.130 5.64 0.00 45.89 4.35
382 383 4.558470 CACGCAAAAATTAGCAATCGTGAT 59.442 37.500 5.64 0.00 45.89 3.06
383 384 5.736824 CACGCAAAAATTAGCAATCGTGATA 59.263 36.000 5.64 0.00 45.89 2.15
384 385 5.737290 ACGCAAAAATTAGCAATCGTGATAC 59.263 36.000 0.00 0.00 0.00 2.24
385 386 5.171337 CGCAAAAATTAGCAATCGTGATACC 59.829 40.000 0.00 0.00 0.00 2.73
386 387 6.033341 GCAAAAATTAGCAATCGTGATACCA 58.967 36.000 0.00 0.00 0.00 3.25
387 388 6.529829 GCAAAAATTAGCAATCGTGATACCAA 59.470 34.615 0.00 0.00 0.00 3.67
388 389 7.222611 GCAAAAATTAGCAATCGTGATACCAAT 59.777 33.333 0.00 0.00 0.00 3.16
389 390 8.533965 CAAAAATTAGCAATCGTGATACCAATG 58.466 33.333 0.00 0.00 0.00 2.82
390 391 6.942532 AATTAGCAATCGTGATACCAATGT 57.057 33.333 0.00 0.00 0.00 2.71
391 392 5.733226 TTAGCAATCGTGATACCAATGTG 57.267 39.130 0.00 0.00 0.00 3.21
392 393 2.355756 AGCAATCGTGATACCAATGTGC 59.644 45.455 0.00 0.00 0.00 4.57
393 394 2.097304 GCAATCGTGATACCAATGTGCA 59.903 45.455 0.00 0.00 0.00 4.57
394 395 3.243168 GCAATCGTGATACCAATGTGCAT 60.243 43.478 0.00 0.00 0.00 3.96
395 396 4.284485 CAATCGTGATACCAATGTGCATG 58.716 43.478 0.00 0.00 0.00 4.06
396 397 2.984562 TCGTGATACCAATGTGCATGT 58.015 42.857 0.00 0.00 0.00 3.21
397 398 2.677337 TCGTGATACCAATGTGCATGTG 59.323 45.455 0.00 0.00 0.00 3.21
398 399 2.677337 CGTGATACCAATGTGCATGTGA 59.323 45.455 0.00 0.00 0.00 3.58
399 400 3.313249 CGTGATACCAATGTGCATGTGAT 59.687 43.478 0.00 0.00 0.00 3.06
400 401 4.603985 GTGATACCAATGTGCATGTGATG 58.396 43.478 0.00 0.00 0.00 3.07
401 402 4.096833 GTGATACCAATGTGCATGTGATGT 59.903 41.667 0.00 0.00 0.00 3.06
402 403 4.336153 TGATACCAATGTGCATGTGATGTC 59.664 41.667 0.00 0.00 0.00 3.06
403 404 1.820519 ACCAATGTGCATGTGATGTCC 59.179 47.619 0.00 0.00 0.00 4.02
404 405 1.135527 CCAATGTGCATGTGATGTCCC 59.864 52.381 0.00 0.00 0.00 4.46
405 406 1.819903 CAATGTGCATGTGATGTCCCA 59.180 47.619 0.00 0.00 0.00 4.37
406 407 1.758936 ATGTGCATGTGATGTCCCAG 58.241 50.000 0.00 0.00 0.00 4.45
407 408 0.401356 TGTGCATGTGATGTCCCAGT 59.599 50.000 0.00 0.00 0.00 4.00
408 409 1.202915 TGTGCATGTGATGTCCCAGTT 60.203 47.619 0.00 0.00 0.00 3.16
409 410 1.200716 GTGCATGTGATGTCCCAGTTG 59.799 52.381 0.00 0.00 0.00 3.16
410 411 1.202915 TGCATGTGATGTCCCAGTTGT 60.203 47.619 0.00 0.00 0.00 3.32
411 412 1.200716 GCATGTGATGTCCCAGTTGTG 59.799 52.381 0.00 0.00 0.00 3.33
412 413 2.781923 CATGTGATGTCCCAGTTGTGA 58.218 47.619 0.00 0.00 0.00 3.58
413 414 3.349927 CATGTGATGTCCCAGTTGTGAT 58.650 45.455 0.00 0.00 0.00 3.06
414 415 4.516323 CATGTGATGTCCCAGTTGTGATA 58.484 43.478 0.00 0.00 0.00 2.15
415 416 4.632327 TGTGATGTCCCAGTTGTGATAA 57.368 40.909 0.00 0.00 0.00 1.75
416 417 5.178096 TGTGATGTCCCAGTTGTGATAAT 57.822 39.130 0.00 0.00 0.00 1.28
417 418 5.569355 TGTGATGTCCCAGTTGTGATAATT 58.431 37.500 0.00 0.00 0.00 1.40
418 419 6.716284 TGTGATGTCCCAGTTGTGATAATTA 58.284 36.000 0.00 0.00 0.00 1.40
419 420 7.345691 TGTGATGTCCCAGTTGTGATAATTAT 58.654 34.615 0.00 0.00 0.00 1.28
420 421 7.282901 TGTGATGTCCCAGTTGTGATAATTATG 59.717 37.037 1.78 0.00 0.00 1.90
421 422 7.283127 GTGATGTCCCAGTTGTGATAATTATGT 59.717 37.037 1.78 0.00 0.00 2.29
422 423 7.282901 TGATGTCCCAGTTGTGATAATTATGTG 59.717 37.037 1.78 0.00 0.00 3.21
423 424 5.356751 TGTCCCAGTTGTGATAATTATGTGC 59.643 40.000 1.78 0.00 0.00 4.57
424 425 5.356751 GTCCCAGTTGTGATAATTATGTGCA 59.643 40.000 1.78 0.00 0.00 4.57
425 426 5.948758 TCCCAGTTGTGATAATTATGTGCAA 59.051 36.000 1.78 2.75 0.00 4.08
426 427 6.606796 TCCCAGTTGTGATAATTATGTGCAAT 59.393 34.615 1.78 0.00 0.00 3.56
427 428 7.123997 TCCCAGTTGTGATAATTATGTGCAATT 59.876 33.333 1.78 0.10 32.91 2.32
428 429 8.412456 CCCAGTTGTGATAATTATGTGCAATTA 58.588 33.333 1.78 0.00 35.44 1.40
429 430 9.800433 CCAGTTGTGATAATTATGTGCAATTAA 57.200 29.630 1.78 0.00 34.82 1.40
440 441 5.886960 ATGTGCAATTAACTCACTCTTCC 57.113 39.130 0.00 0.00 0.00 3.46
441 442 4.973168 TGTGCAATTAACTCACTCTTCCT 58.027 39.130 0.00 0.00 0.00 3.36
442 443 4.756642 TGTGCAATTAACTCACTCTTCCTG 59.243 41.667 0.00 0.00 0.00 3.86
443 444 4.997395 GTGCAATTAACTCACTCTTCCTGA 59.003 41.667 0.00 0.00 0.00 3.86
444 445 5.645497 GTGCAATTAACTCACTCTTCCTGAT 59.355 40.000 0.00 0.00 0.00 2.90
445 446 6.818644 GTGCAATTAACTCACTCTTCCTGATA 59.181 38.462 0.00 0.00 0.00 2.15
446 447 7.010923 GTGCAATTAACTCACTCTTCCTGATAG 59.989 40.741 0.00 0.00 0.00 2.08
447 448 7.044798 GCAATTAACTCACTCTTCCTGATAGT 58.955 38.462 0.00 0.00 0.00 2.12
448 449 8.198109 GCAATTAACTCACTCTTCCTGATAGTA 58.802 37.037 0.00 0.00 0.00 1.82
449 450 9.522804 CAATTAACTCACTCTTCCTGATAGTAC 57.477 37.037 0.00 0.00 0.00 2.73
450 451 5.821516 AACTCACTCTTCCTGATAGTACG 57.178 43.478 0.00 0.00 0.00 3.67
451 452 5.100344 ACTCACTCTTCCTGATAGTACGA 57.900 43.478 0.00 0.00 0.00 3.43
452 453 5.498393 ACTCACTCTTCCTGATAGTACGAA 58.502 41.667 0.00 0.00 0.00 3.85
453 454 5.587043 ACTCACTCTTCCTGATAGTACGAAG 59.413 44.000 0.00 0.91 34.35 3.79
455 456 6.647229 TCACTCTTCCTGATAGTACGAAGTA 58.353 40.000 0.00 0.00 45.11 2.24
531 532 4.408921 TCCTTGAGTTTTGTCTCTTCTGGA 59.591 41.667 0.00 0.00 35.68 3.86
566 567 1.374343 CGCGTCTCCTACAGCCACTA 61.374 60.000 0.00 0.00 0.00 2.74
567 568 0.815734 GCGTCTCCTACAGCCACTAA 59.184 55.000 0.00 0.00 0.00 2.24
649 650 4.082571 ACTTTGATTAGTCCTTGTGCATGC 60.083 41.667 11.82 11.82 0.00 4.06
650 651 3.070476 TGATTAGTCCTTGTGCATGCA 57.930 42.857 18.46 18.46 0.00 3.96
651 652 3.623703 TGATTAGTCCTTGTGCATGCAT 58.376 40.909 25.64 8.42 0.00 3.96
652 653 3.379057 TGATTAGTCCTTGTGCATGCATG 59.621 43.478 25.64 22.70 0.00 4.06
653 654 1.753930 TAGTCCTTGTGCATGCATGG 58.246 50.000 25.64 24.02 35.67 3.66
654 655 0.038599 AGTCCTTGTGCATGCATGGA 59.961 50.000 25.64 25.75 39.44 3.41
655 656 1.108776 GTCCTTGTGCATGCATGGAT 58.891 50.000 29.45 0.00 42.26 3.41
656 657 1.066605 GTCCTTGTGCATGCATGGATC 59.933 52.381 29.45 22.12 42.26 3.36
657 658 0.030235 CCTTGTGCATGCATGGATCG 59.970 55.000 25.64 16.03 36.21 3.69
658 659 0.594028 CTTGTGCATGCATGGATCGC 60.594 55.000 25.64 17.27 0.00 4.58
659 660 2.007113 TTGTGCATGCATGGATCGCC 62.007 55.000 25.64 13.54 0.00 5.54
660 661 2.191513 GTGCATGCATGGATCGCCT 61.192 57.895 25.64 0.00 34.31 5.52
661 662 1.895231 TGCATGCATGGATCGCCTC 60.895 57.895 27.34 9.08 34.31 4.70
662 663 2.623915 GCATGCATGGATCGCCTCC 61.624 63.158 27.34 4.17 45.19 4.30
663 664 1.072678 CATGCATGGATCGCCTCCT 59.927 57.895 19.40 0.00 45.21 3.69
682 683 2.169352 CCTCATTCCATCCGTTCTCACT 59.831 50.000 0.00 0.00 0.00 3.41
683 684 3.452474 CTCATTCCATCCGTTCTCACTC 58.548 50.000 0.00 0.00 0.00 3.51
685 686 3.515502 TCATTCCATCCGTTCTCACTCTT 59.484 43.478 0.00 0.00 0.00 2.85
686 687 3.594603 TTCCATCCGTTCTCACTCTTC 57.405 47.619 0.00 0.00 0.00 2.87
687 688 2.808919 TCCATCCGTTCTCACTCTTCT 58.191 47.619 0.00 0.00 0.00 2.85
688 689 2.755655 TCCATCCGTTCTCACTCTTCTC 59.244 50.000 0.00 0.00 0.00 2.87
689 690 2.757868 CCATCCGTTCTCACTCTTCTCT 59.242 50.000 0.00 0.00 0.00 3.10
704 720 6.484643 CACTCTTCTCTCTCTCTCTCCATTAG 59.515 46.154 0.00 0.00 0.00 1.73
707 723 5.725551 TCTCTCTCTCTCTCCATTAGGTT 57.274 43.478 0.00 0.00 35.89 3.50
711 727 5.654650 TCTCTCTCTCTCCATTAGGTTGAAC 59.345 44.000 0.00 0.00 35.89 3.18
712 728 5.333581 TCTCTCTCTCCATTAGGTTGAACA 58.666 41.667 0.00 0.00 35.89 3.18
737 768 3.451526 TGAGATCTCGATTGCACATCAC 58.548 45.455 17.76 0.00 0.00 3.06
741 772 2.621338 TCTCGATTGCACATCACCTTC 58.379 47.619 0.00 0.00 0.00 3.46
752 783 2.813754 ACATCACCTTCCATTGAACGTG 59.186 45.455 0.00 3.27 38.25 4.49
794 825 0.673644 CTGGGTTGTGGTGATCGGTC 60.674 60.000 0.00 0.00 0.00 4.79
826 865 1.880340 GGCTGGCTTCGTCAGATCG 60.880 63.158 0.00 0.00 37.47 3.69
844 883 3.793797 TCGTCATCCATTGATACGTGT 57.206 42.857 0.00 0.00 36.54 4.49
867 909 1.405526 GGAGTGGCTAGCATCGTTTCA 60.406 52.381 18.24 0.00 0.00 2.69
881 923 3.865446 TCGTTTCAGATCTGCATCATGT 58.135 40.909 18.36 0.00 0.00 3.21
925 967 7.391554 ACCACTACTAGTAACTTGTATCGTTCA 59.608 37.037 3.76 0.00 0.00 3.18
932 974 7.772332 AGTAACTTGTATCGTTCATTCATCC 57.228 36.000 0.00 0.00 0.00 3.51
946 988 2.879002 TCATCCTCTTCTTAGCGCTG 57.121 50.000 22.90 3.79 0.00 5.18
947 989 1.202463 TCATCCTCTTCTTAGCGCTGC 60.202 52.381 22.90 0.00 0.00 5.25
975 1017 4.925861 GCTCCATGGCTCGGCTCC 62.926 72.222 6.96 0.00 0.00 4.70
994 1036 2.235402 TCCTAGATGTTGTCGTTTCCCC 59.765 50.000 0.00 0.00 0.00 4.81
1059 1101 1.127567 AGGTGAGGTGCCAACTGCTA 61.128 55.000 0.00 0.00 42.00 3.49
1174 1216 2.885113 CTCATGGAGGTCGCACGA 59.115 61.111 0.00 0.00 0.00 4.35
1238 1280 2.793010 GAAGCTGCTGAAACTGGCGC 62.793 60.000 1.35 0.00 0.00 6.53
1278 1323 1.414550 GGACTTCCTGGATCCAGCTAC 59.585 57.143 32.97 20.53 42.35 3.58
1377 1422 2.232452 AGATCCTGGACTTGTTCGAGTG 59.768 50.000 0.00 0.00 0.00 3.51
1387 1432 3.055094 ACTTGTTCGAGTGGCATATCCTT 60.055 43.478 0.00 0.00 35.26 3.36
1507 1552 1.891919 CACCAACACCAGTGGTCCG 60.892 63.158 13.31 4.76 31.02 4.79
1586 1631 0.746063 AGAGCTCTGCGAGAATCCTG 59.254 55.000 17.42 0.00 0.00 3.86
1651 1696 2.435693 CCCGGAGCCAGTAAGGGAG 61.436 68.421 0.73 0.00 44.70 4.30
1674 1719 0.531200 AAGCTCTTCTTCGGGTACGG 59.469 55.000 0.00 0.00 41.39 4.02
1732 1777 1.408702 GGCAACTGCAAGGACAAGAAA 59.591 47.619 3.76 0.00 44.36 2.52
2011 2056 0.721718 GGAGCGACGAAAAGGACATG 59.278 55.000 0.00 0.00 0.00 3.21
2031 2076 0.806241 AACGAGAGCGAGAGAAGGAC 59.194 55.000 0.00 0.00 41.64 3.85
2192 2249 0.452784 GCTCAACGACACCGCAAATC 60.453 55.000 0.00 0.00 39.95 2.17
2193 2250 0.165944 CTCAACGACACCGCAAATCC 59.834 55.000 0.00 0.00 39.95 3.01
2211 2268 2.586079 CAGCGCCGATGGTACCAG 60.586 66.667 21.41 8.05 0.00 4.00
2235 2295 2.449137 ATCCAGGGGATGCTCAAAAG 57.551 50.000 0.00 0.00 41.43 2.27
2236 2296 1.687368 ATCCAGGGGATGCTCAAAAGC 60.687 52.381 0.00 0.00 41.43 3.51
2304 2364 1.864711 CGAGAAGTTGAAGGCACGAAA 59.135 47.619 0.00 0.00 0.00 3.46
2350 2410 1.140161 CGGCATCCTGGCAAACATG 59.860 57.895 1.53 0.00 43.94 3.21
2376 2436 2.508439 CATCGCCGGCGTGTTAGT 60.508 61.111 44.16 22.90 40.74 2.24
2525 2585 1.443828 GTCGAGGAGAAGGCCCATC 59.556 63.158 0.00 0.00 0.00 3.51
2526 2586 1.001631 TCGAGGAGAAGGCCCATCA 59.998 57.895 0.00 0.00 0.00 3.07
2530 2590 0.029267 AGGAGAAGGCCCATCATCCT 60.029 55.000 15.50 15.50 32.31 3.24
2531 2591 0.399833 GGAGAAGGCCCATCATCCTC 59.600 60.000 0.00 0.00 0.00 3.71
2532 2592 1.135094 GAGAAGGCCCATCATCCTCA 58.865 55.000 0.00 0.00 0.00 3.86
2545 2605 2.025037 TCATCCTCAGGTTGGAAATGGG 60.025 50.000 1.70 0.00 37.13 4.00
2546 2606 1.753903 TCCTCAGGTTGGAAATGGGA 58.246 50.000 0.00 0.00 0.00 4.37
2650 2710 3.871594 GTGGAGGAGACAAACATAATCGG 59.128 47.826 0.00 0.00 0.00 4.18
2680 2740 1.259770 CACGAGCACATTCATCGGATG 59.740 52.381 11.79 11.79 40.67 3.51
2866 2959 3.104512 TCCTAAAGGATGATGGTGTCGT 58.895 45.455 0.00 0.00 39.78 4.34
3067 3163 2.122413 ACTGAGTGTGGGCCAGGA 60.122 61.111 6.40 0.00 32.52 3.86
3068 3164 2.219875 ACTGAGTGTGGGCCAGGAG 61.220 63.158 6.40 0.63 32.52 3.69
3069 3165 2.930019 TGAGTGTGGGCCAGGAGG 60.930 66.667 6.40 0.00 38.23 4.30
3081 3177 1.566298 CCAGGAGGAGGACAAAGGGG 61.566 65.000 0.00 0.00 36.89 4.79
3166 3274 0.107459 GAGTTCCAGGTGATGAGGGC 60.107 60.000 0.00 0.00 0.00 5.19
3215 3323 3.036429 GCTGGCCGGGATGAAGTCT 62.036 63.158 15.02 0.00 0.00 3.24
3329 3437 1.004745 GTCCTGAAGCTTCAATGGGGA 59.995 52.381 28.16 25.91 36.64 4.81
3371 3485 3.764466 CCTGTCGCCCGAAGCTCT 61.764 66.667 0.00 0.00 40.39 4.09
3427 3541 3.810687 AAGGTCTCCAGCCCCACCA 62.811 63.158 0.00 0.00 0.00 4.17
3451 3565 3.021695 ACCTCCATGAACTTCGTATCGA 58.978 45.455 0.00 0.00 0.00 3.59
3458 3572 5.048643 CCATGAACTTCGTATCGAGAGGTAT 60.049 44.000 0.00 0.00 37.14 2.73
3459 3573 6.439599 CATGAACTTCGTATCGAGAGGTATT 58.560 40.000 0.00 0.00 37.14 1.89
3728 3851 2.258726 GCCGAAAGTTGCGTTCCCT 61.259 57.895 1.83 0.00 0.00 4.20
3807 3930 2.693762 CGCTGCACAGGTCCCATTG 61.694 63.158 0.00 0.00 0.00 2.82
3824 3947 2.125512 GATCTGCGCGTCAAGGGT 60.126 61.111 8.43 0.00 34.93 4.34
3825 3948 2.434884 ATCTGCGCGTCAAGGGTG 60.435 61.111 8.43 0.00 34.93 4.61
3826 3949 2.835701 GATCTGCGCGTCAAGGGTGA 62.836 60.000 8.43 0.01 34.93 4.02
3845 3968 1.003118 GAGTGCCCTCACATTACACCA 59.997 52.381 0.00 0.00 45.49 4.17
3900 4023 4.041567 TCTCAACCTGCAAATTCCACTAGA 59.958 41.667 0.00 0.00 0.00 2.43
3902 4025 2.716217 ACCTGCAAATTCCACTAGAGC 58.284 47.619 0.00 0.00 0.00 4.09
3925 4054 2.577593 GTCCCTCCCTACGTGCAC 59.422 66.667 6.82 6.82 0.00 4.57
3978 4107 2.769663 TCGTCACTGGGCCTGTAATAAT 59.230 45.455 16.24 0.00 0.00 1.28
3979 4108 3.962063 TCGTCACTGGGCCTGTAATAATA 59.038 43.478 16.24 0.00 0.00 0.98
3980 4109 4.406326 TCGTCACTGGGCCTGTAATAATAA 59.594 41.667 16.24 0.00 0.00 1.40
3986 4115 8.719596 TCACTGGGCCTGTAATAATAAGATTAA 58.280 33.333 16.24 0.00 0.00 1.40
4034 4164 1.373570 CCTTGCTGCTTACTGGCTAC 58.626 55.000 0.00 0.00 0.00 3.58
4073 4203 2.662791 CGGCGTTGTGATCTCTGTTTTG 60.663 50.000 0.00 0.00 0.00 2.44
4081 4211 6.522625 TGTGATCTCTGTTTTGGTTTCAAA 57.477 33.333 0.00 0.00 40.71 2.69
4082 4212 6.929625 TGTGATCTCTGTTTTGGTTTCAAAA 58.070 32.000 0.00 0.78 46.81 2.44
4102 4232 0.252012 AATTGCATGGAACGGGGGAA 60.252 50.000 0.12 0.00 0.00 3.97
4103 4233 0.252012 ATTGCATGGAACGGGGGAAA 60.252 50.000 0.12 0.00 0.00 3.13
4104 4234 1.182385 TTGCATGGAACGGGGGAAAC 61.182 55.000 0.00 0.00 0.00 2.78
4119 4249 3.552132 GGAAACCCTTTGGCTCAAAAA 57.448 42.857 2.66 0.00 32.75 1.94
4120 4250 4.085357 GGAAACCCTTTGGCTCAAAAAT 57.915 40.909 2.66 0.00 32.75 1.82
4121 4251 5.222079 GGAAACCCTTTGGCTCAAAAATA 57.778 39.130 2.66 0.00 32.75 1.40
4122 4252 5.616270 GGAAACCCTTTGGCTCAAAAATAA 58.384 37.500 2.66 0.00 32.75 1.40
4123 4253 6.058833 GGAAACCCTTTGGCTCAAAAATAAA 58.941 36.000 2.66 0.00 32.75 1.40
4124 4254 6.714810 GGAAACCCTTTGGCTCAAAAATAAAT 59.285 34.615 2.66 0.00 32.75 1.40
4125 4255 7.880713 GGAAACCCTTTGGCTCAAAAATAAATA 59.119 33.333 2.66 0.00 32.75 1.40
4126 4256 9.278978 GAAACCCTTTGGCTCAAAAATAAATAA 57.721 29.630 2.66 0.00 32.75 1.40
4127 4257 9.634021 AAACCCTTTGGCTCAAAAATAAATAAA 57.366 25.926 2.66 0.00 32.75 1.40
4128 4258 9.806448 AACCCTTTGGCTCAAAAATAAATAAAT 57.194 25.926 2.66 0.00 32.75 1.40
4129 4259 9.806448 ACCCTTTGGCTCAAAAATAAATAAATT 57.194 25.926 2.66 0.00 32.75 1.82
4180 4310 9.039870 TGAAATAAAAACCTTTTCGTAGACGTA 57.960 29.630 1.46 0.00 40.80 3.57
4200 4330 5.706369 ACGTAGCACCACTCTATTATCTAGG 59.294 44.000 0.00 0.00 0.00 3.02
4203 4333 5.706447 AGCACCACTCTATTATCTAGGACA 58.294 41.667 0.00 0.00 0.00 4.02
4214 4344 9.015367 TCTATTATCTAGGACACTGATAAGTGC 57.985 37.037 10.40 3.31 43.13 4.40
4219 4349 6.077993 TCTAGGACACTGATAAGTGCCATAT 58.922 40.000 19.83 7.42 43.13 1.78
4220 4350 4.965814 AGGACACTGATAAGTGCCATATG 58.034 43.478 19.83 0.00 43.13 1.78
4222 4352 5.602561 AGGACACTGATAAGTGCCATATGTA 59.397 40.000 19.83 0.00 43.13 2.29
4225 4355 7.066307 ACACTGATAAGTGCCATATGTATGA 57.934 36.000 10.40 0.00 43.13 2.15
4238 4368 6.728200 CCATATGTATGACACGAAGCAATTT 58.272 36.000 1.24 0.00 35.75 1.82
4246 4376 3.411446 ACACGAAGCAATTTCATCCTGA 58.589 40.909 0.00 0.00 35.43 3.86
4247 4377 3.189287 ACACGAAGCAATTTCATCCTGAC 59.811 43.478 0.00 0.00 35.43 3.51
4249 4379 2.672874 CGAAGCAATTTCATCCTGACGA 59.327 45.455 0.00 0.00 35.43 4.20
4254 4384 6.029346 AGCAATTTCATCCTGACGATTTTT 57.971 33.333 0.00 0.00 0.00 1.94
4278 4408 4.546829 TGGCAAGTTTAGTTATCCGAGT 57.453 40.909 0.00 0.00 0.00 4.18
4288 4418 7.441458 AGTTTAGTTATCCGAGTATGGCAATTC 59.559 37.037 0.00 0.00 0.00 2.17
4331 4461 4.320608 TTCTGTTTGGATGGCAAGTTTC 57.679 40.909 0.00 0.00 0.00 2.78
4333 4463 3.318839 TCTGTTTGGATGGCAAGTTTCAG 59.681 43.478 0.00 0.00 0.00 3.02
4338 4468 6.183360 TGTTTGGATGGCAAGTTTCAGTTTAT 60.183 34.615 0.00 0.00 0.00 1.40
4340 4470 6.418057 TGGATGGCAAGTTTCAGTTTATTT 57.582 33.333 0.00 0.00 0.00 1.40
4341 4471 6.825610 TGGATGGCAAGTTTCAGTTTATTTT 58.174 32.000 0.00 0.00 0.00 1.82
4342 4472 7.957002 TGGATGGCAAGTTTCAGTTTATTTTA 58.043 30.769 0.00 0.00 0.00 1.52
4390 4521 2.666272 TGCCAGGTGGTGTTATTTCA 57.334 45.000 0.00 0.00 37.57 2.69
4400 4531 3.189285 GGTGTTATTTCATGCCACATGC 58.811 45.455 2.65 0.00 41.77 4.06
4412 4543 1.468520 GCCACATGCGTGACAGTTATT 59.531 47.619 14.17 0.00 46.80 1.40
4413 4544 2.728846 GCCACATGCGTGACAGTTATTG 60.729 50.000 14.17 0.00 46.80 1.90
4418 4549 4.274705 ACATGCGTGACAGTTATTGTTTGA 59.725 37.500 14.17 0.00 41.05 2.69
4420 4551 4.123506 TGCGTGACAGTTATTGTTTGAGA 58.876 39.130 0.00 0.00 41.05 3.27
4450 4581 3.004752 AGGACATCTACAATGCCAACC 57.995 47.619 0.00 0.00 0.00 3.77
4460 4591 0.190815 AATGCCAACCCTCAAACCCT 59.809 50.000 0.00 0.00 0.00 4.34
4463 4594 1.303317 CCAACCCTCAAACCCTCCG 60.303 63.158 0.00 0.00 0.00 4.63
4473 4604 1.546589 AAACCCTCCGCATACGTCCA 61.547 55.000 0.00 0.00 37.70 4.02
4474 4605 1.335132 AACCCTCCGCATACGTCCAT 61.335 55.000 0.00 0.00 37.70 3.41
4478 4609 0.671796 CTCCGCATACGTCCATACCA 59.328 55.000 0.00 0.00 37.70 3.25
4490 4621 5.179045 CGTCCATACCACGTAGTCTAAAT 57.821 43.478 0.00 0.00 41.61 1.40
4493 4624 6.800408 CGTCCATACCACGTAGTCTAAATATG 59.200 42.308 0.00 0.00 41.61 1.78
4501 4632 6.809689 CCACGTAGTCTAAATATGTTGTGTCA 59.190 38.462 0.00 0.00 41.61 3.58
4514 4645 4.269183 TGTTGTGTCATCCAATATGGGTC 58.731 43.478 0.00 0.00 38.32 4.46
4551 4682 1.268625 GTGGTCCGGATGTGTTTTTCC 59.731 52.381 7.81 0.26 0.00 3.13
4596 4727 4.980805 TTTGCGGGCGCTCGAACT 62.981 61.111 37.54 0.00 42.51 3.01
4623 4754 4.760047 CCCGTTCCTGACTGCCCG 62.760 72.222 0.00 0.00 0.00 6.13
4653 4802 3.943137 AACCCCTCCCTCATGGCGA 62.943 63.158 0.00 0.00 0.00 5.54
4668 4817 2.986306 GCGACAGCTGCCTGCATTT 61.986 57.895 15.27 0.00 45.94 2.32
4687 4836 6.455360 CATTTATGCCATTGTAGAGTGGTT 57.545 37.500 3.27 0.00 37.81 3.67
4689 4838 2.949177 TGCCATTGTAGAGTGGTTGT 57.051 45.000 3.27 0.00 37.81 3.32
4691 4840 3.561143 TGCCATTGTAGAGTGGTTGTTT 58.439 40.909 3.27 0.00 37.81 2.83
4694 4843 3.188460 CCATTGTAGAGTGGTTGTTTCGG 59.812 47.826 0.00 0.00 0.00 4.30
4698 4847 4.312443 TGTAGAGTGGTTGTTTCGGATTC 58.688 43.478 0.00 0.00 0.00 2.52
4710 4859 2.511600 GGATTCACGCCGGTCCAG 60.512 66.667 1.90 0.00 0.00 3.86
4727 4876 2.257676 GAACGGACGCGACCTCTT 59.742 61.111 24.38 15.27 0.00 2.85
4728 4877 2.049433 AACGGACGCGACCTCTTG 60.049 61.111 24.38 11.85 0.00 3.02
4732 4881 2.811317 GACGCGACCTCTTGCTGG 60.811 66.667 15.93 0.00 0.00 4.85
4733 4882 3.575351 GACGCGACCTCTTGCTGGT 62.575 63.158 15.93 0.00 41.07 4.00
4735 4884 3.426568 GCGACCTCTTGCTGGTGC 61.427 66.667 0.00 0.00 38.03 5.01
4736 4885 2.345244 CGACCTCTTGCTGGTGCT 59.655 61.111 0.00 0.00 38.03 4.40
4737 4886 2.031516 CGACCTCTTGCTGGTGCTG 61.032 63.158 0.00 0.00 38.03 4.41
4738 4887 2.282040 ACCTCTTGCTGGTGCTGC 60.282 61.111 0.00 0.00 40.48 5.25
4775 4924 4.697756 CCGAGAAAGTGCCGCCCA 62.698 66.667 0.00 0.00 0.00 5.36
4776 4925 2.436646 CGAGAAAGTGCCGCCCAT 60.437 61.111 0.00 0.00 0.00 4.00
4788 4937 3.361977 GCCCATTGCACGTTCGGT 61.362 61.111 0.00 0.00 40.77 4.69
4804 4953 3.755112 TCGGTTGAACACACCTAATCA 57.245 42.857 0.00 0.00 0.00 2.57
4805 4954 4.280436 TCGGTTGAACACACCTAATCAT 57.720 40.909 0.00 0.00 0.00 2.45
4807 4956 3.062099 CGGTTGAACACACCTAATCATCG 59.938 47.826 0.00 0.00 0.00 3.84
4815 4964 4.094887 ACACACCTAATCATCGCATTCAAC 59.905 41.667 0.00 0.00 0.00 3.18
4820 4969 2.315925 ATCATCGCATTCAACCGACT 57.684 45.000 0.00 0.00 36.18 4.18
4821 4970 2.093306 TCATCGCATTCAACCGACTT 57.907 45.000 0.00 0.00 36.18 3.01
4824 4973 1.428448 TCGCATTCAACCGACTTCAG 58.572 50.000 0.00 0.00 0.00 3.02
4831 4980 0.034059 CAACCGACTTCAGACTGCCT 59.966 55.000 0.00 0.00 0.00 4.75
4832 4981 0.759346 AACCGACTTCAGACTGCCTT 59.241 50.000 0.00 0.00 0.00 4.35
4833 4982 0.034059 ACCGACTTCAGACTGCCTTG 59.966 55.000 0.00 0.00 0.00 3.61
4835 4984 1.294659 CGACTTCAGACTGCCTTGCC 61.295 60.000 0.00 0.00 0.00 4.52
4837 4986 1.276421 GACTTCAGACTGCCTTGCCTA 59.724 52.381 0.00 0.00 0.00 3.93
4839 4988 0.324943 TTCAGACTGCCTTGCCTACC 59.675 55.000 0.00 0.00 0.00 3.18
4840 4989 0.545309 TCAGACTGCCTTGCCTACCT 60.545 55.000 0.00 0.00 0.00 3.08
4841 4990 0.326264 CAGACTGCCTTGCCTACCTT 59.674 55.000 0.00 0.00 0.00 3.50
4846 4995 1.747355 CTGCCTTGCCTACCTTCATTG 59.253 52.381 0.00 0.00 0.00 2.82
4851 5000 3.562176 CCTTGCCTACCTTCATTGAACCT 60.562 47.826 0.00 0.00 0.00 3.50
4853 5002 1.745653 GCCTACCTTCATTGAACCTGC 59.254 52.381 0.00 0.00 0.00 4.85
4855 5004 1.398390 CTACCTTCATTGAACCTGCGC 59.602 52.381 0.00 0.00 0.00 6.09
4869 5018 4.719616 GCGCGTGTGCCGAGAAAC 62.720 66.667 8.43 0.00 38.82 2.78
4877 5026 0.458025 GTGCCGAGAAACCTACTCCG 60.458 60.000 0.00 0.00 0.00 4.63
4883 5032 1.891150 GAGAAACCTACTCCGACCACA 59.109 52.381 0.00 0.00 0.00 4.17
4885 5034 1.342174 GAAACCTACTCCGACCACACA 59.658 52.381 0.00 0.00 0.00 3.72
4888 5037 0.460311 CCTACTCCGACCACACATCC 59.540 60.000 0.00 0.00 0.00 3.51
4890 5039 1.940883 TACTCCGACCACACATCCGC 61.941 60.000 0.00 0.00 0.00 5.54
4891 5040 4.077184 TCCGACCACACATCCGCC 62.077 66.667 0.00 0.00 0.00 6.13
4897 5046 2.358125 CACACATCCGCCCGTGAA 60.358 61.111 0.00 0.00 36.91 3.18
4899 5048 2.047274 CACATCCGCCCGTGAACT 60.047 61.111 0.00 0.00 35.02 3.01
4901 5050 0.806102 CACATCCGCCCGTGAACTAG 60.806 60.000 0.00 0.00 35.02 2.57
4903 5052 2.058595 ATCCGCCCGTGAACTAGCT 61.059 57.895 0.00 0.00 0.00 3.32
4905 5054 2.509336 CGCCCGTGAACTAGCTGG 60.509 66.667 0.00 0.00 0.00 4.85
4910 5059 1.134521 CCCGTGAACTAGCTGGCATTA 60.135 52.381 0.00 0.00 0.00 1.90
4916 5065 4.215399 GTGAACTAGCTGGCATTAAACACA 59.785 41.667 0.00 0.00 0.00 3.72
4919 5068 4.141287 ACTAGCTGGCATTAAACACAACA 58.859 39.130 0.00 0.00 0.00 3.33
4922 5071 2.035832 GCTGGCATTAAACACAACACCT 59.964 45.455 0.00 0.00 0.00 4.00
4931 5080 0.546122 ACACAACACCTCTTGGCTCA 59.454 50.000 0.00 0.00 36.63 4.26
4937 5086 1.078848 ACCTCTTGGCTCATCACGC 60.079 57.895 0.00 0.00 36.63 5.34
4952 5101 4.591498 TCATCACGCCCACCTACTATTTAT 59.409 41.667 0.00 0.00 0.00 1.40
4965 5114 6.614087 ACCTACTATTTATACAAGGCCAGACA 59.386 38.462 5.01 0.00 0.00 3.41
5056 5205 0.373024 CGTCCGTCGAGTAGGAAGAC 59.627 60.000 10.46 0.00 42.86 3.01
5076 5225 2.039879 ACGGGTTCTCCAGCATAAAAGT 59.960 45.455 0.00 0.00 34.36 2.66
5088 5237 2.870035 GCATAAAAGTTGGTTGGGTGGC 60.870 50.000 0.00 0.00 0.00 5.01
5092 5241 1.145571 AAGTTGGTTGGGTGGCTCTA 58.854 50.000 0.00 0.00 0.00 2.43
5109 5258 1.134007 TCTACGAGCCTTCCGGATACA 60.134 52.381 4.15 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.612174 TCTTCCTCCTCCACTGACGG 60.612 60.000 0.00 0.00 0.00 4.79
1 2 0.814457 CTCTTCCTCCTCCACTGACG 59.186 60.000 0.00 0.00 0.00 4.35
4 5 1.830477 CTTCCTCTTCCTCCTCCACTG 59.170 57.143 0.00 0.00 0.00 3.66
5 6 1.719378 TCTTCCTCTTCCTCCTCCACT 59.281 52.381 0.00 0.00 0.00 4.00
6 7 1.828595 GTCTTCCTCTTCCTCCTCCAC 59.171 57.143 0.00 0.00 0.00 4.02
7 8 1.719378 AGTCTTCCTCTTCCTCCTCCA 59.281 52.381 0.00 0.00 0.00 3.86
8 9 2.107366 CAGTCTTCCTCTTCCTCCTCC 58.893 57.143 0.00 0.00 0.00 4.30
9 10 1.480545 GCAGTCTTCCTCTTCCTCCTC 59.519 57.143 0.00 0.00 0.00 3.71
10 11 1.203237 TGCAGTCTTCCTCTTCCTCCT 60.203 52.381 0.00 0.00 0.00 3.69
11 12 1.270907 TGCAGTCTTCCTCTTCCTCC 58.729 55.000 0.00 0.00 0.00 4.30
12 13 2.235898 ACATGCAGTCTTCCTCTTCCTC 59.764 50.000 0.00 0.00 0.00 3.71
13 14 2.264455 ACATGCAGTCTTCCTCTTCCT 58.736 47.619 0.00 0.00 0.00 3.36
14 15 2.777832 ACATGCAGTCTTCCTCTTCC 57.222 50.000 0.00 0.00 0.00 3.46
15 16 3.182967 CGTACATGCAGTCTTCCTCTTC 58.817 50.000 0.00 0.00 0.00 2.87
16 17 2.093973 CCGTACATGCAGTCTTCCTCTT 60.094 50.000 0.00 0.00 0.00 2.85
17 18 1.478510 CCGTACATGCAGTCTTCCTCT 59.521 52.381 0.00 0.00 0.00 3.69
18 19 1.471676 CCCGTACATGCAGTCTTCCTC 60.472 57.143 0.00 0.00 0.00 3.71
19 20 0.537188 CCCGTACATGCAGTCTTCCT 59.463 55.000 0.00 0.00 0.00 3.36
20 21 0.535335 TCCCGTACATGCAGTCTTCC 59.465 55.000 0.00 0.00 0.00 3.46
21 22 1.471676 CCTCCCGTACATGCAGTCTTC 60.472 57.143 0.00 0.00 0.00 2.87
22 23 0.537188 CCTCCCGTACATGCAGTCTT 59.463 55.000 0.00 0.00 0.00 3.01
23 24 1.961180 GCCTCCCGTACATGCAGTCT 61.961 60.000 0.00 0.00 0.00 3.24
24 25 1.521681 GCCTCCCGTACATGCAGTC 60.522 63.158 0.00 0.00 0.00 3.51
25 26 0.686441 TAGCCTCCCGTACATGCAGT 60.686 55.000 0.00 0.00 0.00 4.40
26 27 0.032678 CTAGCCTCCCGTACATGCAG 59.967 60.000 0.00 0.00 0.00 4.41
27 28 0.396556 TCTAGCCTCCCGTACATGCA 60.397 55.000 0.00 0.00 0.00 3.96
28 29 0.032267 GTCTAGCCTCCCGTACATGC 59.968 60.000 0.00 0.00 0.00 4.06
29 30 1.338337 CAGTCTAGCCTCCCGTACATG 59.662 57.143 0.00 0.00 0.00 3.21
30 31 1.693627 CAGTCTAGCCTCCCGTACAT 58.306 55.000 0.00 0.00 0.00 2.29
31 32 1.035932 GCAGTCTAGCCTCCCGTACA 61.036 60.000 0.00 0.00 0.00 2.90
32 33 0.752376 AGCAGTCTAGCCTCCCGTAC 60.752 60.000 0.00 0.00 34.23 3.67
33 34 0.465824 GAGCAGTCTAGCCTCCCGTA 60.466 60.000 0.00 0.00 34.23 4.02
34 35 1.755008 GAGCAGTCTAGCCTCCCGT 60.755 63.158 0.00 0.00 34.23 5.28
35 36 2.840066 CGAGCAGTCTAGCCTCCCG 61.840 68.421 0.00 0.00 34.23 5.14
36 37 1.730451 GACGAGCAGTCTAGCCTCCC 61.730 65.000 5.26 0.00 46.13 4.30
37 38 1.731093 GACGAGCAGTCTAGCCTCC 59.269 63.158 5.26 0.00 46.13 4.30
50 51 2.437343 GGACGAAAGCAGCGACGAG 61.437 63.158 13.85 0.00 0.00 4.18
51 52 2.430244 GGACGAAAGCAGCGACGA 60.430 61.111 13.85 0.00 0.00 4.20
52 53 2.430921 AGGACGAAAGCAGCGACG 60.431 61.111 0.00 7.22 0.00 5.12
53 54 2.095252 GGAGGACGAAAGCAGCGAC 61.095 63.158 0.00 0.00 0.00 5.19
54 55 2.094757 TTGGAGGACGAAAGCAGCGA 62.095 55.000 0.00 0.00 0.00 4.93
55 56 1.227999 TTTGGAGGACGAAAGCAGCG 61.228 55.000 0.00 0.00 0.00 5.18
56 57 0.951558 TTTTGGAGGACGAAAGCAGC 59.048 50.000 0.00 0.00 0.00 5.25
57 58 1.266989 GGTTTTGGAGGACGAAAGCAG 59.733 52.381 0.00 0.00 45.84 4.24
58 59 1.314730 GGTTTTGGAGGACGAAAGCA 58.685 50.000 0.00 0.00 45.84 3.91
59 60 1.314730 TGGTTTTGGAGGACGAAAGC 58.685 50.000 0.00 0.00 46.43 3.51
60 61 2.228822 CCATGGTTTTGGAGGACGAAAG 59.771 50.000 2.57 0.00 39.25 2.62
61 62 2.235016 CCATGGTTTTGGAGGACGAAA 58.765 47.619 2.57 0.00 39.25 3.46
62 63 1.904287 CCATGGTTTTGGAGGACGAA 58.096 50.000 2.57 0.00 39.25 3.85
63 64 0.608035 GCCATGGTTTTGGAGGACGA 60.608 55.000 14.67 0.00 39.25 4.20
64 65 1.883021 GCCATGGTTTTGGAGGACG 59.117 57.895 14.67 0.00 39.25 4.79
65 66 1.883021 CGCCATGGTTTTGGAGGAC 59.117 57.895 14.67 0.00 39.25 3.85
66 67 4.413928 CGCCATGGTTTTGGAGGA 57.586 55.556 14.67 0.00 39.25 3.71
68 69 2.573340 GCCGCCATGGTTTTGGAG 59.427 61.111 14.67 0.00 39.25 3.86
69 70 3.369400 CGCCGCCATGGTTTTGGA 61.369 61.111 14.67 0.00 39.25 3.53
70 71 4.433877 CCGCCGCCATGGTTTTGG 62.434 66.667 14.67 11.48 41.21 3.28
126 127 4.367023 TTGTTCCCTCCGTCGCCG 62.367 66.667 0.00 0.00 0.00 6.46
127 128 2.434359 CTTGTTCCCTCCGTCGCC 60.434 66.667 0.00 0.00 0.00 5.54
128 129 1.737008 GACTTGTTCCCTCCGTCGC 60.737 63.158 0.00 0.00 0.00 5.19
129 130 1.443872 CGACTTGTTCCCTCCGTCG 60.444 63.158 0.00 0.00 40.92 5.12
130 131 0.109226 CTCGACTTGTTCCCTCCGTC 60.109 60.000 0.00 0.00 0.00 4.79
131 132 1.533469 CCTCGACTTGTTCCCTCCGT 61.533 60.000 0.00 0.00 0.00 4.69
132 133 1.215647 CCTCGACTTGTTCCCTCCG 59.784 63.158 0.00 0.00 0.00 4.63
133 134 0.533032 CTCCTCGACTTGTTCCCTCC 59.467 60.000 0.00 0.00 0.00 4.30
134 135 0.533032 CCTCCTCGACTTGTTCCCTC 59.467 60.000 0.00 0.00 0.00 4.30
135 136 0.114560 TCCTCCTCGACTTGTTCCCT 59.885 55.000 0.00 0.00 0.00 4.20
136 137 0.533032 CTCCTCCTCGACTTGTTCCC 59.467 60.000 0.00 0.00 0.00 3.97
137 138 0.533032 CCTCCTCCTCGACTTGTTCC 59.467 60.000 0.00 0.00 0.00 3.62
138 139 0.533032 CCCTCCTCCTCGACTTGTTC 59.467 60.000 0.00 0.00 0.00 3.18
139 140 0.905337 CCCCTCCTCCTCGACTTGTT 60.905 60.000 0.00 0.00 0.00 2.83
140 141 1.305381 CCCCTCCTCCTCGACTTGT 60.305 63.158 0.00 0.00 0.00 3.16
141 142 1.000486 TCCCCTCCTCCTCGACTTG 60.000 63.158 0.00 0.00 0.00 3.16
142 143 1.308326 CTCCCCTCCTCCTCGACTT 59.692 63.158 0.00 0.00 0.00 3.01
143 144 2.695970 CCTCCCCTCCTCCTCGACT 61.696 68.421 0.00 0.00 0.00 4.18
144 145 2.123640 CCTCCCCTCCTCCTCGAC 60.124 72.222 0.00 0.00 0.00 4.20
145 146 2.286962 TCCTCCCCTCCTCCTCGA 60.287 66.667 0.00 0.00 0.00 4.04
146 147 1.939082 TTCTCCTCCCCTCCTCCTCG 61.939 65.000 0.00 0.00 0.00 4.63
147 148 0.565674 ATTCTCCTCCCCTCCTCCTC 59.434 60.000 0.00 0.00 0.00 3.71
148 149 0.267356 CATTCTCCTCCCCTCCTCCT 59.733 60.000 0.00 0.00 0.00 3.69
149 150 0.766288 CCATTCTCCTCCCCTCCTCC 60.766 65.000 0.00 0.00 0.00 4.30
150 151 0.030603 ACCATTCTCCTCCCCTCCTC 60.031 60.000 0.00 0.00 0.00 3.71
151 152 0.327000 CACCATTCTCCTCCCCTCCT 60.327 60.000 0.00 0.00 0.00 3.69
152 153 1.988982 GCACCATTCTCCTCCCCTCC 61.989 65.000 0.00 0.00 0.00 4.30
153 154 1.274703 TGCACCATTCTCCTCCCCTC 61.275 60.000 0.00 0.00 0.00 4.30
154 155 1.229951 TGCACCATTCTCCTCCCCT 60.230 57.895 0.00 0.00 0.00 4.79
155 156 1.225704 CTGCACCATTCTCCTCCCC 59.774 63.158 0.00 0.00 0.00 4.81
156 157 0.393537 CACTGCACCATTCTCCTCCC 60.394 60.000 0.00 0.00 0.00 4.30
157 158 0.393537 CCACTGCACCATTCTCCTCC 60.394 60.000 0.00 0.00 0.00 4.30
158 159 0.393537 CCCACTGCACCATTCTCCTC 60.394 60.000 0.00 0.00 0.00 3.71
159 160 1.687612 CCCACTGCACCATTCTCCT 59.312 57.895 0.00 0.00 0.00 3.69
160 161 1.379044 CCCCACTGCACCATTCTCC 60.379 63.158 0.00 0.00 0.00 3.71
161 162 1.379044 CCCCCACTGCACCATTCTC 60.379 63.158 0.00 0.00 0.00 2.87
162 163 1.852157 TCCCCCACTGCACCATTCT 60.852 57.895 0.00 0.00 0.00 2.40
163 164 1.678970 GTCCCCCACTGCACCATTC 60.679 63.158 0.00 0.00 0.00 2.67
164 165 2.440599 GTCCCCCACTGCACCATT 59.559 61.111 0.00 0.00 0.00 3.16
165 166 4.033776 CGTCCCCCACTGCACCAT 62.034 66.667 0.00 0.00 0.00 3.55
167 168 3.948719 TTCGTCCCCCACTGCACC 61.949 66.667 0.00 0.00 0.00 5.01
168 169 2.668550 GTTCGTCCCCCACTGCAC 60.669 66.667 0.00 0.00 0.00 4.57
169 170 3.948719 GGTTCGTCCCCCACTGCA 61.949 66.667 0.00 0.00 0.00 4.41
171 172 4.388499 CCGGTTCGTCCCCCACTG 62.388 72.222 0.00 0.00 0.00 3.66
172 173 4.948080 ACCGGTTCGTCCCCCACT 62.948 66.667 0.00 0.00 0.00 4.00
173 174 4.692475 CACCGGTTCGTCCCCCAC 62.692 72.222 2.97 0.00 0.00 4.61
195 196 2.107141 GCTCTCCAATCCGGTCCG 59.893 66.667 3.60 3.60 35.57 4.79
196 197 2.107141 CGCTCTCCAATCCGGTCC 59.893 66.667 0.00 0.00 35.57 4.46
197 198 2.107141 CCGCTCTCCAATCCGGTC 59.893 66.667 0.00 0.00 36.18 4.79
198 199 4.162690 GCCGCTCTCCAATCCGGT 62.163 66.667 0.00 0.00 42.54 5.28
199 200 3.798954 GAGCCGCTCTCCAATCCGG 62.799 68.421 13.42 0.00 43.38 5.14
200 201 2.279784 GAGCCGCTCTCCAATCCG 60.280 66.667 13.42 0.00 35.77 4.18
201 202 2.279784 CGAGCCGCTCTCCAATCC 60.280 66.667 18.14 0.00 38.62 3.01
202 203 1.590259 GACGAGCCGCTCTCCAATC 60.590 63.158 18.14 4.63 38.62 2.67
203 204 2.496817 GACGAGCCGCTCTCCAAT 59.503 61.111 18.14 0.00 38.62 3.16
204 205 2.831894 TAGGACGAGCCGCTCTCCAA 62.832 60.000 27.03 7.92 43.43 3.53
205 206 3.339738 TAGGACGAGCCGCTCTCCA 62.340 63.158 27.03 16.84 43.43 3.86
206 207 2.516460 TAGGACGAGCCGCTCTCC 60.516 66.667 21.94 21.94 43.43 3.71
207 208 1.778027 GACTAGGACGAGCCGCTCTC 61.778 65.000 18.14 13.45 43.43 3.20
208 209 1.820481 GACTAGGACGAGCCGCTCT 60.820 63.158 18.14 5.51 43.43 4.09
209 210 2.054140 CTGACTAGGACGAGCCGCTC 62.054 65.000 10.59 10.59 43.43 5.03
210 211 2.045242 TGACTAGGACGAGCCGCT 60.045 61.111 0.00 0.00 43.43 5.52
211 212 2.409651 CTGACTAGGACGAGCCGC 59.590 66.667 0.00 0.00 43.43 6.53
212 213 2.409651 GCTGACTAGGACGAGCCG 59.590 66.667 0.00 0.00 43.43 5.52
213 214 2.409651 CGCTGACTAGGACGAGCC 59.590 66.667 0.00 0.00 0.00 4.70
214 215 2.278271 GCGCTGACTAGGACGAGC 60.278 66.667 0.00 0.00 0.00 5.03
215 216 2.023461 CGCGCTGACTAGGACGAG 59.977 66.667 5.56 0.00 0.00 4.18
216 217 4.175489 GCGCGCTGACTAGGACGA 62.175 66.667 26.67 0.00 0.00 4.20
296 297 8.770828 GCTAAAAGGCTGATTTATACGTATTGA 58.229 33.333 14.33 3.21 0.00 2.57
297 298 8.015658 GGCTAAAAGGCTGATTTATACGTATTG 58.984 37.037 14.33 0.00 37.85 1.90
298 299 8.095937 GGCTAAAAGGCTGATTTATACGTATT 57.904 34.615 14.33 0.00 37.85 1.89
299 300 7.668525 GGCTAAAAGGCTGATTTATACGTAT 57.331 36.000 13.54 13.54 37.85 3.06
325 326 5.474876 ACATTGGTTCAGGTTTTTGCAAAAA 59.525 32.000 28.85 28.85 35.67 1.94
326 327 5.006386 ACATTGGTTCAGGTTTTTGCAAAA 58.994 33.333 20.46 20.46 0.00 2.44
327 328 4.583871 ACATTGGTTCAGGTTTTTGCAAA 58.416 34.783 8.05 8.05 0.00 3.68
328 329 4.213564 ACATTGGTTCAGGTTTTTGCAA 57.786 36.364 0.00 0.00 0.00 4.08
329 330 3.902881 ACATTGGTTCAGGTTTTTGCA 57.097 38.095 0.00 0.00 0.00 4.08
330 331 3.312146 CCAACATTGGTTCAGGTTTTTGC 59.688 43.478 2.22 0.00 43.43 3.68
344 345 1.870402 TGCGTGTCAGTACCAACATTG 59.130 47.619 1.67 0.34 0.00 2.82
345 346 2.248280 TGCGTGTCAGTACCAACATT 57.752 45.000 1.67 0.00 0.00 2.71
346 347 2.248280 TTGCGTGTCAGTACCAACAT 57.752 45.000 1.67 0.00 0.00 2.71
347 348 2.025589 TTTGCGTGTCAGTACCAACA 57.974 45.000 0.00 0.00 0.00 3.33
348 349 3.408288 TTTTTGCGTGTCAGTACCAAC 57.592 42.857 0.00 0.00 0.00 3.77
349 350 4.640789 AATTTTTGCGTGTCAGTACCAA 57.359 36.364 0.00 0.00 0.00 3.67
350 351 4.319911 GCTAATTTTTGCGTGTCAGTACCA 60.320 41.667 0.00 0.00 0.00 3.25
351 352 4.156182 GCTAATTTTTGCGTGTCAGTACC 58.844 43.478 0.00 0.00 0.00 3.34
352 353 4.778904 TGCTAATTTTTGCGTGTCAGTAC 58.221 39.130 0.00 0.00 0.00 2.73
353 354 5.425577 TTGCTAATTTTTGCGTGTCAGTA 57.574 34.783 0.00 0.00 0.00 2.74
354 355 3.980646 TGCTAATTTTTGCGTGTCAGT 57.019 38.095 0.00 0.00 0.00 3.41
355 356 4.029418 CGATTGCTAATTTTTGCGTGTCAG 59.971 41.667 0.00 0.00 0.00 3.51
356 357 3.911365 CGATTGCTAATTTTTGCGTGTCA 59.089 39.130 0.00 0.00 0.00 3.58
357 358 3.911964 ACGATTGCTAATTTTTGCGTGTC 59.088 39.130 0.00 0.00 0.00 3.67
358 359 3.668191 CACGATTGCTAATTTTTGCGTGT 59.332 39.130 0.00 0.00 41.81 4.49
359 360 3.911365 TCACGATTGCTAATTTTTGCGTG 59.089 39.130 0.00 0.00 46.29 5.34
360 361 4.153958 TCACGATTGCTAATTTTTGCGT 57.846 36.364 0.00 0.00 0.00 5.24
361 362 5.171337 GGTATCACGATTGCTAATTTTTGCG 59.829 40.000 0.00 0.00 0.00 4.85
362 363 6.033341 TGGTATCACGATTGCTAATTTTTGC 58.967 36.000 0.00 0.00 0.00 3.68
363 364 8.533965 CATTGGTATCACGATTGCTAATTTTTG 58.466 33.333 0.00 0.00 0.00 2.44
364 365 8.250332 ACATTGGTATCACGATTGCTAATTTTT 58.750 29.630 0.00 0.00 0.00 1.94
365 366 7.701924 CACATTGGTATCACGATTGCTAATTTT 59.298 33.333 0.00 0.00 0.00 1.82
366 367 7.195646 CACATTGGTATCACGATTGCTAATTT 58.804 34.615 0.00 0.00 0.00 1.82
367 368 6.728200 CACATTGGTATCACGATTGCTAATT 58.272 36.000 0.00 0.00 0.00 1.40
368 369 5.277974 GCACATTGGTATCACGATTGCTAAT 60.278 40.000 0.00 0.00 0.00 1.73
369 370 4.035091 GCACATTGGTATCACGATTGCTAA 59.965 41.667 0.00 0.00 0.00 3.09
370 371 3.559655 GCACATTGGTATCACGATTGCTA 59.440 43.478 0.00 0.00 0.00 3.49
371 372 2.355756 GCACATTGGTATCACGATTGCT 59.644 45.455 0.00 0.00 0.00 3.91
372 373 2.097304 TGCACATTGGTATCACGATTGC 59.903 45.455 0.00 0.00 0.00 3.56
373 374 4.201940 ACATGCACATTGGTATCACGATTG 60.202 41.667 0.00 0.00 0.00 2.67
374 375 3.947196 ACATGCACATTGGTATCACGATT 59.053 39.130 0.00 0.00 0.00 3.34
375 376 3.313249 CACATGCACATTGGTATCACGAT 59.687 43.478 0.00 0.00 0.00 3.73
376 377 2.677337 CACATGCACATTGGTATCACGA 59.323 45.455 0.00 0.00 0.00 4.35
377 378 2.677337 TCACATGCACATTGGTATCACG 59.323 45.455 0.00 0.00 0.00 4.35
378 379 4.096833 ACATCACATGCACATTGGTATCAC 59.903 41.667 0.00 0.00 0.00 3.06
379 380 4.271661 ACATCACATGCACATTGGTATCA 58.728 39.130 0.00 0.00 0.00 2.15
380 381 4.261322 GGACATCACATGCACATTGGTATC 60.261 45.833 0.00 0.00 0.00 2.24
381 382 3.633525 GGACATCACATGCACATTGGTAT 59.366 43.478 0.00 0.00 0.00 2.73
382 383 3.016031 GGACATCACATGCACATTGGTA 58.984 45.455 0.00 0.00 0.00 3.25
383 384 1.820519 GGACATCACATGCACATTGGT 59.179 47.619 0.00 0.00 0.00 3.67
384 385 1.135527 GGGACATCACATGCACATTGG 59.864 52.381 0.00 0.00 0.00 3.16
385 386 1.819903 TGGGACATCACATGCACATTG 59.180 47.619 0.00 0.00 0.00 2.82
386 387 2.097036 CTGGGACATCACATGCACATT 58.903 47.619 0.00 0.00 38.20 2.71
387 388 1.005097 ACTGGGACATCACATGCACAT 59.995 47.619 0.00 0.00 38.20 3.21
388 389 0.401356 ACTGGGACATCACATGCACA 59.599 50.000 0.00 0.00 38.20 4.57
389 390 1.200716 CAACTGGGACATCACATGCAC 59.799 52.381 0.00 0.00 38.20 4.57
390 391 1.202915 ACAACTGGGACATCACATGCA 60.203 47.619 0.00 0.00 38.20 3.96
391 392 1.200716 CACAACTGGGACATCACATGC 59.799 52.381 0.00 0.00 38.20 4.06
392 393 2.781923 TCACAACTGGGACATCACATG 58.218 47.619 0.00 0.00 38.20 3.21
393 394 3.726557 ATCACAACTGGGACATCACAT 57.273 42.857 0.00 0.00 38.20 3.21
394 395 4.632327 TTATCACAACTGGGACATCACA 57.368 40.909 0.00 0.00 38.20 3.58
395 396 7.283127 ACATAATTATCACAACTGGGACATCAC 59.717 37.037 0.00 0.00 38.20 3.06
396 397 7.282901 CACATAATTATCACAACTGGGACATCA 59.717 37.037 0.00 0.00 38.20 3.07
397 398 7.642669 CACATAATTATCACAACTGGGACATC 58.357 38.462 0.00 0.00 38.20 3.06
398 399 6.039717 GCACATAATTATCACAACTGGGACAT 59.960 38.462 0.00 0.00 38.20 3.06
399 400 5.356751 GCACATAATTATCACAACTGGGACA 59.643 40.000 0.00 0.00 0.00 4.02
400 401 5.356751 TGCACATAATTATCACAACTGGGAC 59.643 40.000 0.00 0.00 0.00 4.46
401 402 5.504853 TGCACATAATTATCACAACTGGGA 58.495 37.500 0.00 0.00 0.00 4.37
402 403 5.833406 TGCACATAATTATCACAACTGGG 57.167 39.130 0.00 0.00 0.00 4.45
403 404 9.800433 TTAATTGCACATAATTATCACAACTGG 57.200 29.630 0.00 0.00 33.78 4.00
414 415 8.462016 GGAAGAGTGAGTTAATTGCACATAATT 58.538 33.333 0.00 0.00 35.08 1.40
415 416 7.831193 AGGAAGAGTGAGTTAATTGCACATAAT 59.169 33.333 0.00 0.00 35.08 1.28
416 417 7.119699 CAGGAAGAGTGAGTTAATTGCACATAA 59.880 37.037 0.00 0.00 35.08 1.90
417 418 6.595326 CAGGAAGAGTGAGTTAATTGCACATA 59.405 38.462 0.00 0.00 35.08 2.29
418 419 5.413833 CAGGAAGAGTGAGTTAATTGCACAT 59.586 40.000 0.00 0.00 35.08 3.21
419 420 4.756642 CAGGAAGAGTGAGTTAATTGCACA 59.243 41.667 0.00 0.00 35.08 4.57
420 421 4.997395 TCAGGAAGAGTGAGTTAATTGCAC 59.003 41.667 0.00 0.00 0.00 4.57
421 422 5.227569 TCAGGAAGAGTGAGTTAATTGCA 57.772 39.130 0.00 0.00 0.00 4.08
422 423 7.044798 ACTATCAGGAAGAGTGAGTTAATTGC 58.955 38.462 0.00 0.00 0.00 3.56
423 424 9.522804 GTACTATCAGGAAGAGTGAGTTAATTG 57.477 37.037 0.00 0.00 0.00 2.32
424 425 8.407064 CGTACTATCAGGAAGAGTGAGTTAATT 58.593 37.037 0.00 0.00 0.00 1.40
425 426 7.774157 TCGTACTATCAGGAAGAGTGAGTTAAT 59.226 37.037 0.00 0.00 0.00 1.40
426 427 7.108194 TCGTACTATCAGGAAGAGTGAGTTAA 58.892 38.462 0.00 0.00 0.00 2.01
427 428 6.647229 TCGTACTATCAGGAAGAGTGAGTTA 58.353 40.000 0.00 0.00 0.00 2.24
428 429 5.498393 TCGTACTATCAGGAAGAGTGAGTT 58.502 41.667 0.00 0.00 0.00 3.01
429 430 5.100344 TCGTACTATCAGGAAGAGTGAGT 57.900 43.478 0.00 0.00 0.00 3.41
430 431 5.587043 ACTTCGTACTATCAGGAAGAGTGAG 59.413 44.000 11.42 0.00 40.99 3.51
431 432 5.498393 ACTTCGTACTATCAGGAAGAGTGA 58.502 41.667 11.42 0.00 40.99 3.41
432 433 5.821516 ACTTCGTACTATCAGGAAGAGTG 57.178 43.478 11.42 0.00 40.99 3.51
433 434 6.652053 ACTACTTCGTACTATCAGGAAGAGT 58.348 40.000 11.42 8.21 40.99 3.24
434 435 7.927629 AGTACTACTTCGTACTATCAGGAAGAG 59.072 40.741 11.42 7.77 46.02 2.85
435 436 7.790027 AGTACTACTTCGTACTATCAGGAAGA 58.210 38.462 11.42 0.00 46.02 2.87
436 437 9.195411 CTAGTACTACTTCGTACTATCAGGAAG 57.805 40.741 10.26 4.88 46.27 3.46
437 438 8.700051 ACTAGTACTACTTCGTACTATCAGGAA 58.300 37.037 10.26 0.00 46.27 3.36
438 439 8.243961 ACTAGTACTACTTCGTACTATCAGGA 57.756 38.462 10.26 0.00 46.27 3.86
457 458 8.725148 GCGACTAGCCAAGTATAAATACTAGTA 58.275 37.037 4.77 4.77 40.30 1.82
458 459 7.592051 GCGACTAGCCAAGTATAAATACTAGT 58.408 38.462 0.00 0.00 40.30 2.57
498 499 2.438075 CTCAAGGAGCAGGCTGGC 60.438 66.667 17.64 8.72 0.00 4.85
510 511 4.513318 GGTCCAGAAGAGACAAAACTCAAG 59.487 45.833 0.00 0.00 39.14 3.02
653 654 1.338579 GGATGGAATGAGGAGGCGATC 60.339 57.143 0.00 0.00 0.00 3.69
654 655 0.689623 GGATGGAATGAGGAGGCGAT 59.310 55.000 0.00 0.00 0.00 4.58
655 656 1.748329 CGGATGGAATGAGGAGGCGA 61.748 60.000 0.00 0.00 0.00 5.54
656 657 1.301244 CGGATGGAATGAGGAGGCG 60.301 63.158 0.00 0.00 0.00 5.52
657 658 0.181350 AACGGATGGAATGAGGAGGC 59.819 55.000 0.00 0.00 0.00 4.70
658 659 1.765314 AGAACGGATGGAATGAGGAGG 59.235 52.381 0.00 0.00 0.00 4.30
659 660 2.432146 TGAGAACGGATGGAATGAGGAG 59.568 50.000 0.00 0.00 0.00 3.69
660 661 2.168521 GTGAGAACGGATGGAATGAGGA 59.831 50.000 0.00 0.00 0.00 3.71
661 662 2.169352 AGTGAGAACGGATGGAATGAGG 59.831 50.000 0.00 0.00 0.00 3.86
662 663 3.131933 AGAGTGAGAACGGATGGAATGAG 59.868 47.826 0.00 0.00 0.00 2.90
663 664 3.099905 AGAGTGAGAACGGATGGAATGA 58.900 45.455 0.00 0.00 0.00 2.57
682 683 5.431731 ACCTAATGGAGAGAGAGAGAGAAGA 59.568 44.000 0.00 0.00 37.04 2.87
683 684 5.694995 ACCTAATGGAGAGAGAGAGAGAAG 58.305 45.833 0.00 0.00 37.04 2.85
685 686 5.192722 TCAACCTAATGGAGAGAGAGAGAGA 59.807 44.000 0.00 0.00 37.04 3.10
686 687 5.445069 TCAACCTAATGGAGAGAGAGAGAG 58.555 45.833 0.00 0.00 37.04 3.20
687 688 5.458451 TCAACCTAATGGAGAGAGAGAGA 57.542 43.478 0.00 0.00 37.04 3.10
688 689 5.420421 TGTTCAACCTAATGGAGAGAGAGAG 59.580 44.000 0.00 0.00 37.04 3.20
689 690 5.333581 TGTTCAACCTAATGGAGAGAGAGA 58.666 41.667 0.00 0.00 37.04 3.10
704 720 3.131223 TCGAGATCTCATCCTGTTCAACC 59.869 47.826 22.31 0.00 0.00 3.77
707 723 4.738839 GCAATCGAGATCTCATCCTGTTCA 60.739 45.833 22.31 0.00 0.00 3.18
711 727 3.058450 GTGCAATCGAGATCTCATCCTG 58.942 50.000 22.31 13.55 0.00 3.86
712 728 2.697229 TGTGCAATCGAGATCTCATCCT 59.303 45.455 22.31 0.89 0.00 3.24
737 768 2.422597 TGCTACACGTTCAATGGAAGG 58.577 47.619 0.85 0.85 42.95 3.46
741 772 1.468127 TGCATGCTACACGTTCAATGG 59.532 47.619 20.33 0.00 0.00 3.16
752 783 4.595116 CAAGCTCAAATACTGCATGCTAC 58.405 43.478 20.33 0.00 0.00 3.58
799 830 1.075659 GAAGCCAGCCATATCCCCC 59.924 63.158 0.00 0.00 0.00 5.40
800 831 1.302832 CGAAGCCAGCCATATCCCC 60.303 63.158 0.00 0.00 0.00 4.81
801 832 0.603975 GACGAAGCCAGCCATATCCC 60.604 60.000 0.00 0.00 0.00 3.85
802 833 0.106708 TGACGAAGCCAGCCATATCC 59.893 55.000 0.00 0.00 0.00 2.59
804 835 1.123077 TCTGACGAAGCCAGCCATAT 58.877 50.000 0.00 0.00 0.00 1.78
826 865 5.597806 TCCTAACACGTATCAATGGATGAC 58.402 41.667 0.00 0.00 41.93 3.06
844 883 1.776662 ACGATGCTAGCCACTCCTAA 58.223 50.000 13.29 0.00 0.00 2.69
867 909 5.354842 TCAGAAGAACATGATGCAGATCT 57.645 39.130 0.00 0.00 0.00 2.75
925 967 3.726607 CAGCGCTAAGAAGAGGATGAAT 58.273 45.455 10.99 0.00 0.00 2.57
932 974 0.997932 CTGTGCAGCGCTAAGAAGAG 59.002 55.000 10.99 0.00 0.00 2.85
947 989 2.045242 ATGGAGCTGCTGCCTGTG 60.045 61.111 18.72 0.00 40.80 3.66
975 1017 3.328382 TGGGGAAACGACAACATCTAG 57.672 47.619 0.00 0.00 0.00 2.43
1019 1061 5.825679 ACCTCTGCCAATTATTGCGTAATTA 59.174 36.000 3.47 0.00 40.23 1.40
1021 1063 4.036734 CACCTCTGCCAATTATTGCGTAAT 59.963 41.667 3.69 3.69 34.46 1.89
1238 1280 2.422519 CCTTGATGTCCCCCAGATCTTG 60.423 54.545 0.00 0.00 0.00 3.02
1296 1341 2.879233 TTGACCCAGGTCCTGTCGC 61.879 63.158 17.85 6.64 43.97 5.19
1377 1422 0.321122 CTCGGCCTCAAGGATATGCC 60.321 60.000 0.00 0.00 37.39 4.40
1387 1432 1.836999 TTTTAGCTGCCTCGGCCTCA 61.837 55.000 0.00 0.00 41.09 3.86
1504 1549 1.256812 TGAGCTGATTCAGTGACGGA 58.743 50.000 14.90 0.00 33.43 4.69
1507 1552 3.325293 TCCTTGAGCTGATTCAGTGAC 57.675 47.619 14.90 7.52 33.43 3.67
1595 1640 2.029828 AGAGTGGAGAAAGTACAGCACG 60.030 50.000 0.00 0.00 0.00 5.34
1674 1719 0.385751 TAGCTGCTCATACTCCACGC 59.614 55.000 4.91 0.00 0.00 5.34
1732 1777 3.637821 TGGCCTATGAGGGAGATAACT 57.362 47.619 3.32 0.00 35.37 2.24
1858 1903 2.290514 CCAAATCTCTGCCAGAAGGTCA 60.291 50.000 0.00 0.00 33.62 4.02
2011 2056 1.088306 TCCTTCTCTCGCTCTCGTTC 58.912 55.000 0.00 0.00 36.96 3.95
2192 2249 4.910585 GGTACCATCGGCGCTGGG 62.911 72.222 30.54 19.84 38.14 4.45
2193 2250 4.155733 TGGTACCATCGGCGCTGG 62.156 66.667 26.63 26.63 39.80 4.85
2225 2285 1.207593 GCACGTCGCTTTTGAGCAT 59.792 52.632 0.00 0.00 37.77 3.79
2235 2295 2.220455 CTTGAGCTTGAGCACGTCGC 62.220 60.000 5.70 2.28 45.16 5.19
2236 2296 1.621301 CCTTGAGCTTGAGCACGTCG 61.621 60.000 5.70 0.00 45.16 5.12
2237 2297 1.294659 CCCTTGAGCTTGAGCACGTC 61.295 60.000 5.70 0.00 45.16 4.34
2239 2299 2.037136 CCCCTTGAGCTTGAGCACG 61.037 63.158 5.70 0.00 45.16 5.34
2343 2403 2.532235 CGATGTGGCATTCCATGTTTG 58.468 47.619 0.00 0.00 45.62 2.93
2350 2410 3.585990 CCGGCGATGTGGCATTCC 61.586 66.667 9.30 0.00 45.16 3.01
2371 2431 2.474816 CTGGCGAGATGGCTTACTAAC 58.525 52.381 0.00 0.00 45.14 2.34
2376 2436 1.001293 CATAGCTGGCGAGATGGCTTA 59.999 52.381 0.00 0.00 45.14 3.09
2525 2585 2.025037 TCCCATTTCCAACCTGAGGATG 60.025 50.000 4.99 2.83 34.56 3.51
2526 2586 2.287584 TCCCATTTCCAACCTGAGGAT 58.712 47.619 4.99 0.00 34.56 3.24
2530 2590 2.621407 GCTCATCCCATTTCCAACCTGA 60.621 50.000 0.00 0.00 0.00 3.86
2531 2591 1.753073 GCTCATCCCATTTCCAACCTG 59.247 52.381 0.00 0.00 0.00 4.00
2532 2592 1.358787 TGCTCATCCCATTTCCAACCT 59.641 47.619 0.00 0.00 0.00 3.50
2545 2605 0.935898 CGTCTTCCATGCTGCTCATC 59.064 55.000 0.00 0.00 31.79 2.92
2546 2606 0.251354 ACGTCTTCCATGCTGCTCAT 59.749 50.000 0.00 0.00 35.31 2.90
2671 2731 2.352715 GCATCACGTATCCATCCGATGA 60.353 50.000 10.12 0.00 33.66 2.92
2680 2740 1.412710 TGGAAGAGGCATCACGTATCC 59.587 52.381 0.00 0.88 0.00 2.59
2723 2795 3.573772 CTTGTCTCCGGTGCTCGCA 62.574 63.158 0.00 0.00 37.59 5.10
2734 2809 2.364002 GGAGGGATGCTAGTCTTGTCTC 59.636 54.545 0.00 0.00 0.00 3.36
2866 2959 6.422333 TGGAGTATATCTTTGTCAATGGCAA 58.578 36.000 0.00 0.00 0.00 4.52
3067 3163 2.376855 CTCTTTTCCCCTTTGTCCTCCT 59.623 50.000 0.00 0.00 0.00 3.69
3068 3164 2.375509 TCTCTTTTCCCCTTTGTCCTCC 59.624 50.000 0.00 0.00 0.00 4.30
3069 3165 3.328050 TCTCTCTTTTCCCCTTTGTCCTC 59.672 47.826 0.00 0.00 0.00 3.71
3081 3177 3.668447 TGGTGATGCACTCTCTCTTTTC 58.332 45.455 0.00 0.00 34.40 2.29
3166 3274 0.462759 GTGCCCTTCCTTCTCCGATG 60.463 60.000 0.00 0.00 0.00 3.84
3215 3323 1.293498 GCTCAGCGTCTTCCCAAGA 59.707 57.895 0.00 0.00 34.51 3.02
3427 3541 4.036498 CGATACGAAGTTCATGGAGGTAGT 59.964 45.833 3.32 0.00 37.78 2.73
3451 3565 0.467659 CGTCTCCCCGGAATACCTCT 60.468 60.000 0.73 0.00 0.00 3.69
3647 3770 3.063180 CCAGCACGATCTTCTTAAGCTTG 59.937 47.826 9.86 0.00 0.00 4.01
3728 3851 3.686760 CTCACGTCCCTGAGCAGA 58.313 61.111 0.00 0.00 31.57 4.26
3807 3930 2.125512 ACCCTTGACGCGCAGATC 60.126 61.111 5.73 1.72 0.00 2.75
3825 3948 1.003118 TGGTGTAATGTGAGGGCACTC 59.997 52.381 9.72 9.72 45.36 3.51
3826 3949 1.003580 CTGGTGTAATGTGAGGGCACT 59.996 52.381 0.00 0.00 45.36 4.40
3839 3962 2.221299 GGGCAGGGTGTCTGGTGTA 61.221 63.158 0.00 0.00 43.54 2.90
3900 4023 3.602075 TAGGGAGGGACGCACAGCT 62.602 63.158 0.00 0.00 30.03 4.24
3902 4025 2.893398 GTAGGGAGGGACGCACAG 59.107 66.667 0.00 0.00 30.03 3.66
3925 4054 1.082756 GAAACTGCACCACGAAGCG 60.083 57.895 0.00 0.00 0.00 4.68
3992 4121 5.393027 GGCAACATCCAGATCAAATAAACGT 60.393 40.000 0.00 0.00 0.00 3.99
3994 4123 6.212888 AGGCAACATCCAGATCAAATAAAC 57.787 37.500 0.00 0.00 41.41 2.01
4081 4211 0.612744 CCCCCGTTCCATGCAATTTT 59.387 50.000 0.00 0.00 0.00 1.82
4082 4212 0.252012 TCCCCCGTTCCATGCAATTT 60.252 50.000 0.00 0.00 0.00 1.82
4089 4219 2.768045 GGGTTTCCCCCGTTCCAT 59.232 61.111 0.00 0.00 45.80 3.41
4102 4232 9.806448 ATTTATTTATTTTTGAGCCAAAGGGTT 57.194 25.926 0.00 0.00 34.72 4.11
4103 4233 9.806448 AATTTATTTATTTTTGAGCCAAAGGGT 57.194 25.926 0.00 0.00 34.72 4.34
4152 4282 9.224058 CGTCTACGAAAAGGTTTTTATTTCAAA 57.776 29.630 0.00 0.00 43.02 2.69
4153 4283 8.397148 ACGTCTACGAAAAGGTTTTTATTTCAA 58.603 29.630 9.86 0.00 43.02 2.69
4154 4284 7.918643 ACGTCTACGAAAAGGTTTTTATTTCA 58.081 30.769 9.86 0.00 43.02 2.69
4155 4285 9.521179 CTACGTCTACGAAAAGGTTTTTATTTC 57.479 33.333 9.86 0.00 43.02 2.17
4156 4286 8.011673 GCTACGTCTACGAAAAGGTTTTTATTT 58.988 33.333 9.86 0.00 43.02 1.40
4157 4287 7.171337 TGCTACGTCTACGAAAAGGTTTTTATT 59.829 33.333 9.86 0.00 43.02 1.40
4158 4288 6.646240 TGCTACGTCTACGAAAAGGTTTTTAT 59.354 34.615 9.86 0.00 43.02 1.40
4180 4310 5.536916 GTGTCCTAGATAATAGAGTGGTGCT 59.463 44.000 0.00 0.00 0.00 4.40
4203 4333 7.066307 TGTCATACATATGGCACTTATCAGT 57.934 36.000 7.80 0.00 42.78 3.41
4214 4344 5.929697 ATTGCTTCGTGTCATACATATGG 57.070 39.130 7.80 0.00 34.50 2.74
4219 4349 5.163764 GGATGAAATTGCTTCGTGTCATACA 60.164 40.000 0.00 0.00 36.78 2.29
4220 4350 5.065218 AGGATGAAATTGCTTCGTGTCATAC 59.935 40.000 0.00 0.00 36.78 2.39
4222 4352 4.012374 AGGATGAAATTGCTTCGTGTCAT 58.988 39.130 0.00 0.00 36.78 3.06
4225 4355 3.411446 TCAGGATGAAATTGCTTCGTGT 58.589 40.909 17.13 0.00 45.97 4.49
4254 4384 6.646267 ACTCGGATAACTAAACTTGCCATAA 58.354 36.000 0.00 0.00 0.00 1.90
4261 4391 6.229936 TGCCATACTCGGATAACTAAACTT 57.770 37.500 0.00 0.00 0.00 2.66
4278 4408 5.252547 TGCTTCACAACTAGAATTGCCATA 58.747 37.500 0.00 0.00 32.47 2.74
4308 4438 4.326504 AACTTGCCATCCAAACAGAAAG 57.673 40.909 0.00 0.00 31.94 2.62
4309 4439 4.161189 TGAAACTTGCCATCCAAACAGAAA 59.839 37.500 0.00 0.00 31.94 2.52
4371 4501 2.666272 TGAAATAACACCACCTGGCA 57.334 45.000 0.00 0.00 39.32 4.92
4372 4502 2.417243 GCATGAAATAACACCACCTGGC 60.417 50.000 0.00 0.00 39.32 4.85
4383 4514 2.751806 TCACGCATGTGGCATGAAATAA 59.248 40.909 11.65 0.00 42.55 1.40
4400 4531 8.873830 AGATAATCTCAAACAATAACTGTCACG 58.126 33.333 0.00 0.00 37.23 4.35
4450 4581 0.810031 CGTATGCGGAGGGTTTGAGG 60.810 60.000 0.00 0.00 0.00 3.86
4460 4591 0.386476 GTGGTATGGACGTATGCGGA 59.614 55.000 8.39 0.00 43.45 5.54
4473 4604 8.472413 ACACAACATATTTAGACTACGTGGTAT 58.528 33.333 3.88 4.05 0.00 2.73
4474 4605 7.829725 ACACAACATATTTAGACTACGTGGTA 58.170 34.615 3.88 0.00 0.00 3.25
4478 4609 7.705325 GGATGACACAACATATTTAGACTACGT 59.295 37.037 0.00 0.00 0.00 3.57
4490 4621 6.012337 ACCCATATTGGATGACACAACATA 57.988 37.500 0.00 0.00 40.96 2.29
4493 4624 4.336433 CAGACCCATATTGGATGACACAAC 59.664 45.833 0.00 0.00 40.96 3.32
4501 4632 5.129485 GGATCGATACAGACCCATATTGGAT 59.871 44.000 1.67 0.00 40.96 3.41
4532 4663 1.611519 GGAAAAACACATCCGGACCA 58.388 50.000 6.12 0.00 0.00 4.02
4541 4672 1.134965 CGGTTTGCAGGGAAAAACACA 60.135 47.619 0.00 0.00 37.89 3.72
4551 4682 1.676006 AGTTTGTCTTCGGTTTGCAGG 59.324 47.619 0.00 0.00 0.00 4.85
4589 4720 2.758089 GGCATGGCAGCAGTTCGAG 61.758 63.158 15.47 0.00 35.83 4.04
4590 4721 2.747460 GGCATGGCAGCAGTTCGA 60.747 61.111 15.47 0.00 35.83 3.71
4650 4799 1.647545 TAAATGCAGGCAGCTGTCGC 61.648 55.000 22.46 22.46 45.94 5.19
4668 4817 4.568072 ACAACCACTCTACAATGGCATA 57.432 40.909 0.00 0.00 39.84 3.14
4675 4824 3.823281 TCCGAAACAACCACTCTACAA 57.177 42.857 0.00 0.00 0.00 2.41
4678 4827 4.312443 GTGAATCCGAAACAACCACTCTA 58.688 43.478 0.00 0.00 0.00 2.43
4683 4832 0.589223 GCGTGAATCCGAAACAACCA 59.411 50.000 0.00 0.00 0.00 3.67
4694 4843 1.079405 TTCTGGACCGGCGTGAATC 60.079 57.895 6.01 0.00 0.00 2.52
4707 4856 3.966026 GAGGTCGCGTCCGTTCTGG 62.966 68.421 16.59 0.00 40.09 3.86
4710 4859 2.087009 CAAGAGGTCGCGTCCGTTC 61.087 63.158 16.59 9.87 35.54 3.95
4717 4866 3.114616 CACCAGCAAGAGGTCGCG 61.115 66.667 0.00 0.00 37.23 5.87
4732 4881 2.180017 CCGCTTCAATGGCAGCAC 59.820 61.111 0.00 0.00 35.60 4.40
4775 4924 3.837669 GTTCAACCGAACGTGCAAT 57.162 47.368 0.00 0.00 42.05 3.56
4783 4932 4.074627 TGATTAGGTGTGTTCAACCGAA 57.925 40.909 0.00 0.00 30.37 4.30
4784 4933 3.755112 TGATTAGGTGTGTTCAACCGA 57.245 42.857 0.00 0.00 30.37 4.69
4788 4937 3.669536 TGCGATGATTAGGTGTGTTCAA 58.330 40.909 0.00 0.00 0.00 2.69
4797 4946 3.059597 GTCGGTTGAATGCGATGATTAGG 60.060 47.826 0.00 0.00 0.00 2.69
4800 4949 2.632377 AGTCGGTTGAATGCGATGATT 58.368 42.857 0.00 0.00 0.00 2.57
4801 4950 2.315925 AGTCGGTTGAATGCGATGAT 57.684 45.000 0.00 0.00 0.00 2.45
4804 4953 2.002586 CTGAAGTCGGTTGAATGCGAT 58.997 47.619 0.00 0.00 0.00 4.58
4805 4954 1.000394 TCTGAAGTCGGTTGAATGCGA 60.000 47.619 0.00 0.00 0.00 5.10
4807 4956 2.158449 CAGTCTGAAGTCGGTTGAATGC 59.842 50.000 0.00 0.00 0.00 3.56
4815 4964 1.294659 GCAAGGCAGTCTGAAGTCGG 61.295 60.000 3.32 0.00 0.00 4.79
4820 4969 0.324943 GGTAGGCAAGGCAGTCTGAA 59.675 55.000 3.32 0.00 0.00 3.02
4821 4970 0.545309 AGGTAGGCAAGGCAGTCTGA 60.545 55.000 3.32 0.00 0.00 3.27
4824 4973 0.324943 TGAAGGTAGGCAAGGCAGTC 59.675 55.000 0.00 0.00 0.00 3.51
4831 4980 3.420893 CAGGTTCAATGAAGGTAGGCAA 58.579 45.455 0.00 0.00 0.00 4.52
4832 4981 2.879756 GCAGGTTCAATGAAGGTAGGCA 60.880 50.000 0.00 0.00 0.00 4.75
4833 4982 1.745653 GCAGGTTCAATGAAGGTAGGC 59.254 52.381 0.00 0.00 0.00 3.93
4835 4984 1.398390 GCGCAGGTTCAATGAAGGTAG 59.602 52.381 0.30 0.00 0.00 3.18
4837 4986 1.577328 CGCGCAGGTTCAATGAAGGT 61.577 55.000 8.75 0.00 0.00 3.50
4839 4988 0.453282 CACGCGCAGGTTCAATGAAG 60.453 55.000 5.73 0.00 0.00 3.02
4840 4989 1.163420 ACACGCGCAGGTTCAATGAA 61.163 50.000 5.73 0.00 0.00 2.57
4841 4990 1.596752 ACACGCGCAGGTTCAATGA 60.597 52.632 5.73 0.00 0.00 2.57
4853 5002 4.072088 GGTTTCTCGGCACACGCG 62.072 66.667 3.53 3.53 43.86 6.01
4855 5004 0.038526 AGTAGGTTTCTCGGCACACG 60.039 55.000 0.00 0.00 46.11 4.49
4863 5012 1.891150 TGTGGTCGGAGTAGGTTTCTC 59.109 52.381 0.00 0.00 0.00 2.87
4869 5018 0.460311 GGATGTGTGGTCGGAGTAGG 59.540 60.000 0.00 0.00 0.00 3.18
4877 5026 4.388499 ACGGGCGGATGTGTGGTC 62.388 66.667 0.00 0.00 0.00 4.02
4883 5032 1.515954 CTAGTTCACGGGCGGATGT 59.484 57.895 0.00 0.00 0.00 3.06
4885 5034 2.058595 AGCTAGTTCACGGGCGGAT 61.059 57.895 0.00 0.00 0.00 4.18
4888 5037 2.509336 CCAGCTAGTTCACGGGCG 60.509 66.667 0.00 0.00 0.00 6.13
4890 5039 0.392998 AATGCCAGCTAGTTCACGGG 60.393 55.000 0.00 0.00 0.00 5.28
4891 5040 2.309528 TAATGCCAGCTAGTTCACGG 57.690 50.000 0.00 0.00 0.00 4.94
4897 5046 4.023193 GTGTTGTGTTTAATGCCAGCTAGT 60.023 41.667 0.00 0.00 0.00 2.57
4899 5048 3.254657 GGTGTTGTGTTTAATGCCAGCTA 59.745 43.478 0.00 0.00 0.00 3.32
4901 5050 2.035832 AGGTGTTGTGTTTAATGCCAGC 59.964 45.455 0.00 0.00 0.00 4.85
4903 5052 3.561143 AGAGGTGTTGTGTTTAATGCCA 58.439 40.909 0.00 0.00 0.00 4.92
4905 5054 4.298332 CCAAGAGGTGTTGTGTTTAATGC 58.702 43.478 0.00 0.00 0.00 3.56
4910 5059 2.024414 GAGCCAAGAGGTGTTGTGTTT 58.976 47.619 0.00 0.00 37.19 2.83
4916 5065 1.609061 CGTGATGAGCCAAGAGGTGTT 60.609 52.381 0.00 0.00 37.19 3.32
4919 5068 1.078848 GCGTGATGAGCCAAGAGGT 60.079 57.895 0.00 0.00 37.19 3.85
4931 5080 5.541101 TGTATAAATAGTAGGTGGGCGTGAT 59.459 40.000 0.00 0.00 0.00 3.06
4937 5086 5.072600 TGGCCTTGTATAAATAGTAGGTGGG 59.927 44.000 3.32 0.00 0.00 4.61
4940 5089 6.614087 TGTCTGGCCTTGTATAAATAGTAGGT 59.386 38.462 3.32 0.00 0.00 3.08
4952 5101 0.391130 GCACGATGTCTGGCCTTGTA 60.391 55.000 3.32 0.00 0.00 2.41
4965 5114 1.741770 GGAGCGGTTCTTGCACGAT 60.742 57.895 0.00 0.00 33.85 3.73
5056 5205 2.711542 ACTTTTATGCTGGAGAACCCG 58.288 47.619 0.00 0.00 37.93 5.28
5058 5207 3.826729 ACCAACTTTTATGCTGGAGAACC 59.173 43.478 0.00 0.00 32.97 3.62
5076 5225 1.122632 TCGTAGAGCCACCCAACCAA 61.123 55.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.