Multiple sequence alignment - TraesCS2B01G042300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G042300 chr2B 100.000 4093 0 0 1 4093 19175174 19171082 0.000000e+00 7559.0
1 TraesCS2B01G042300 chr2B 96.429 56 2 0 3214 3269 19171902 19171847 4.360000e-15 93.5
2 TraesCS2B01G042300 chr2B 96.429 56 2 0 3273 3328 19171961 19171906 4.360000e-15 93.5
3 TraesCS2B01G042300 chr2B 90.000 70 7 0 1533 1602 117888076 117888145 1.570000e-14 91.6
4 TraesCS2B01G042300 chr2A 94.907 1885 41 8 2248 4093 13101908 13100040 0.000000e+00 2898.0
5 TraesCS2B01G042300 chr2A 90.260 1232 55 24 410 1606 13108140 13106939 0.000000e+00 1550.0
6 TraesCS2B01G042300 chr2A 96.856 668 15 4 1585 2248 13106930 13106265 0.000000e+00 1112.0
7 TraesCS2B01G042300 chr2A 76.604 530 68 21 3601 4090 694812812 694813325 1.470000e-59 241.0
8 TraesCS2B01G042300 chr2A 75.047 533 66 29 3601 4085 19485435 19485948 6.990000e-43 185.0
9 TraesCS2B01G042300 chr2A 96.429 56 2 0 3273 3328 13100943 13100888 4.360000e-15 93.5
10 TraesCS2B01G042300 chr3B 77.064 218 26 6 3900 4093 789053235 789053018 2.010000e-18 104.0
11 TraesCS2B01G042300 chr5D 93.443 61 4 0 3535 3595 354544815 354544755 1.570000e-14 91.6
12 TraesCS2B01G042300 chr3D 94.340 53 3 0 3537 3589 388342083 388342135 9.430000e-12 82.4
13 TraesCS2B01G042300 chr6A 88.889 54 5 1 1550 1602 591206183 591206130 9.500000e-07 65.8
14 TraesCS2B01G042300 chr6A 94.595 37 2 0 1539 1575 503723870 503723834 1.590000e-04 58.4
15 TraesCS2B01G042300 chr4B 92.683 41 2 1 1548 1588 529849470 529849431 1.590000e-04 58.4
16 TraesCS2B01G042300 chr5A 100.000 29 0 0 1548 1576 350523465 350523437 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G042300 chr2B 19171082 19175174 4092 True 2582.00 7559 97.619333 1 4093 3 chr2B.!!$R1 4092
1 TraesCS2B01G042300 chr2A 13100040 13101908 1868 True 1495.75 2898 95.668000 2248 4093 2 chr2A.!!$R1 1845
2 TraesCS2B01G042300 chr2A 13106265 13108140 1875 True 1331.00 1550 93.558000 410 2248 2 chr2A.!!$R2 1838
3 TraesCS2B01G042300 chr2A 694812812 694813325 513 False 241.00 241 76.604000 3601 4090 1 chr2A.!!$F2 489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 122 0.031585 CAGCAGCAGCAGCAAAGAAA 59.968 50.0 12.92 0.0 45.49 2.52 F
1250 1287 0.036732 GGTGATGTTCCAGAGTGGCA 59.963 55.0 0.00 0.0 37.47 4.92 F
2997 3070 0.178992 TTTGTGGGGAGGTTCAGCAG 60.179 55.0 0.00 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 1808 0.101759 TGCTGGTCGCGGTCTATTAC 59.898 55.000 6.13 0.0 43.27 1.89 R
3053 3126 1.625818 CAAGTAGGCTGTCCAGTTCCT 59.374 52.381 0.00 0.0 33.74 3.36 R
4059 4203 2.506472 GGGAGCATCGAAGGGGAC 59.494 66.667 0.00 0.0 34.37 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.788766 GCGGTGTACTTGGCGCTG 61.789 66.667 7.64 0.06 0.00 5.18
19 20 2.048597 CGGTGTACTTGGCGCTGA 60.049 61.111 7.64 0.00 0.00 4.26
20 21 2.380410 CGGTGTACTTGGCGCTGAC 61.380 63.158 7.64 0.00 0.00 3.51
21 22 2.033194 GGTGTACTTGGCGCTGACC 61.033 63.158 7.64 0.00 0.00 4.02
22 23 2.048597 TGTACTTGGCGCTGACCG 60.049 61.111 7.64 0.00 40.75 4.79
23 24 2.813908 GTACTTGGCGCTGACCGG 60.814 66.667 7.64 0.00 37.44 5.28
32 33 4.008933 GCTGACCGGCCACAGACT 62.009 66.667 22.24 0.00 36.38 3.24
33 34 2.262915 CTGACCGGCCACAGACTC 59.737 66.667 15.72 0.00 36.38 3.36
34 35 2.523168 TGACCGGCCACAGACTCA 60.523 61.111 0.00 0.00 0.00 3.41
35 36 2.262915 GACCGGCCACAGACTCAG 59.737 66.667 0.00 0.00 0.00 3.35
36 37 2.524394 ACCGGCCACAGACTCAGT 60.524 61.111 0.00 0.00 0.00 3.41
37 38 1.228769 ACCGGCCACAGACTCAGTA 60.229 57.895 0.00 0.00 0.00 2.74
38 39 1.215647 CCGGCCACAGACTCAGTAC 59.784 63.158 2.24 0.00 0.00 2.73
39 40 1.154016 CGGCCACAGACTCAGTACG 60.154 63.158 2.24 0.00 0.00 3.67
40 41 1.215647 GGCCACAGACTCAGTACGG 59.784 63.158 0.00 0.00 0.00 4.02
41 42 1.248785 GGCCACAGACTCAGTACGGA 61.249 60.000 0.00 0.00 0.00 4.69
42 43 0.109226 GCCACAGACTCAGTACGGAC 60.109 60.000 0.00 0.00 0.00 4.79
43 44 0.526662 CCACAGACTCAGTACGGACC 59.473 60.000 0.00 0.00 0.00 4.46
44 45 1.244816 CACAGACTCAGTACGGACCA 58.755 55.000 0.00 0.00 0.00 4.02
45 46 1.819288 CACAGACTCAGTACGGACCAT 59.181 52.381 0.00 0.00 0.00 3.55
46 47 1.819288 ACAGACTCAGTACGGACCATG 59.181 52.381 0.00 0.00 0.00 3.66
47 48 0.818296 AGACTCAGTACGGACCATGC 59.182 55.000 0.00 0.00 0.00 4.06
48 49 0.530744 GACTCAGTACGGACCATGCA 59.469 55.000 0.00 0.00 0.00 3.96
49 50 1.137086 GACTCAGTACGGACCATGCAT 59.863 52.381 0.00 0.00 0.00 3.96
50 51 1.137086 ACTCAGTACGGACCATGCATC 59.863 52.381 0.00 0.00 0.00 3.91
51 52 0.464036 TCAGTACGGACCATGCATCC 59.536 55.000 0.00 0.00 0.00 3.51
52 53 0.532862 CAGTACGGACCATGCATCCC 60.533 60.000 0.00 0.00 31.99 3.85
53 54 1.594293 GTACGGACCATGCATCCCG 60.594 63.158 22.69 22.69 46.65 5.14
54 55 1.758906 TACGGACCATGCATCCCGA 60.759 57.895 28.05 14.85 44.29 5.14
55 56 1.744320 TACGGACCATGCATCCCGAG 61.744 60.000 28.05 11.23 44.29 4.63
56 57 2.796193 CGGACCATGCATCCCGAGA 61.796 63.158 20.84 0.00 44.29 4.04
57 58 1.227674 GGACCATGCATCCCGAGAC 60.228 63.158 0.00 0.00 0.00 3.36
58 59 1.592669 GACCATGCATCCCGAGACG 60.593 63.158 0.00 0.00 0.00 4.18
72 73 3.085443 CGAGACGGAGCATATCTTTGT 57.915 47.619 0.00 0.00 0.00 2.83
73 74 2.791560 CGAGACGGAGCATATCTTTGTG 59.208 50.000 0.00 0.00 0.00 3.33
74 75 3.735208 CGAGACGGAGCATATCTTTGTGT 60.735 47.826 0.00 0.00 0.00 3.72
75 76 4.184629 GAGACGGAGCATATCTTTGTGTT 58.815 43.478 0.00 0.00 0.00 3.32
76 77 5.339008 AGACGGAGCATATCTTTGTGTTA 57.661 39.130 0.00 0.00 0.00 2.41
77 78 5.352284 AGACGGAGCATATCTTTGTGTTAG 58.648 41.667 0.00 0.00 0.00 2.34
78 79 5.127194 AGACGGAGCATATCTTTGTGTTAGA 59.873 40.000 0.00 0.00 0.00 2.10
79 80 5.918608 ACGGAGCATATCTTTGTGTTAGAT 58.081 37.500 0.00 0.00 36.39 1.98
80 81 5.986135 ACGGAGCATATCTTTGTGTTAGATC 59.014 40.000 0.00 0.00 34.35 2.75
81 82 5.406780 CGGAGCATATCTTTGTGTTAGATCC 59.593 44.000 0.00 0.00 34.35 3.36
82 83 5.703130 GGAGCATATCTTTGTGTTAGATCCC 59.297 44.000 0.00 0.00 34.35 3.85
83 84 6.252599 AGCATATCTTTGTGTTAGATCCCA 57.747 37.500 0.00 0.00 34.35 4.37
84 85 6.845908 AGCATATCTTTGTGTTAGATCCCAT 58.154 36.000 0.00 0.00 34.35 4.00
85 86 6.713903 AGCATATCTTTGTGTTAGATCCCATG 59.286 38.462 0.00 0.00 34.35 3.66
86 87 6.569226 GCATATCTTTGTGTTAGATCCCATGC 60.569 42.308 0.00 0.00 35.85 4.06
87 88 4.574674 TCTTTGTGTTAGATCCCATGCT 57.425 40.909 0.00 0.00 0.00 3.79
88 89 5.692115 TCTTTGTGTTAGATCCCATGCTA 57.308 39.130 0.00 0.00 0.00 3.49
89 90 5.428253 TCTTTGTGTTAGATCCCATGCTAC 58.572 41.667 0.00 0.00 0.00 3.58
90 91 5.189736 TCTTTGTGTTAGATCCCATGCTACT 59.810 40.000 0.00 0.00 0.00 2.57
91 92 6.382859 TCTTTGTGTTAGATCCCATGCTACTA 59.617 38.462 0.00 0.00 0.00 1.82
92 93 5.791336 TGTGTTAGATCCCATGCTACTAG 57.209 43.478 0.00 0.00 0.00 2.57
93 94 5.208890 TGTGTTAGATCCCATGCTACTAGT 58.791 41.667 0.00 0.00 0.00 2.57
94 95 6.370453 TGTGTTAGATCCCATGCTACTAGTA 58.630 40.000 1.89 1.89 0.00 1.82
95 96 6.490381 TGTGTTAGATCCCATGCTACTAGTAG 59.510 42.308 23.25 23.25 36.29 2.57
96 97 6.490721 GTGTTAGATCCCATGCTACTAGTAGT 59.509 42.308 26.76 8.14 35.65 2.73
97 98 7.664731 GTGTTAGATCCCATGCTACTAGTAGTA 59.335 40.741 26.76 24.00 35.65 1.82
109 110 3.887352 ACTAGTAGTAGTAGCAGCAGCA 58.113 45.455 8.55 0.00 37.76 4.41
110 111 3.880490 ACTAGTAGTAGTAGCAGCAGCAG 59.120 47.826 8.55 0.00 37.76 4.24
111 112 1.407258 AGTAGTAGTAGCAGCAGCAGC 59.593 52.381 3.17 0.46 45.49 5.25
112 113 1.135139 GTAGTAGTAGCAGCAGCAGCA 59.865 52.381 12.92 0.00 45.49 4.41
113 114 0.175302 AGTAGTAGCAGCAGCAGCAG 59.825 55.000 12.92 0.00 45.49 4.24
119 120 3.351450 CAGCAGCAGCAGCAAAGA 58.649 55.556 12.92 0.00 45.49 2.52
120 121 1.658114 CAGCAGCAGCAGCAAAGAA 59.342 52.632 12.92 0.00 45.49 2.52
121 122 0.031585 CAGCAGCAGCAGCAAAGAAA 59.968 50.000 12.92 0.00 45.49 2.52
122 123 0.748450 AGCAGCAGCAGCAAAGAAAA 59.252 45.000 12.92 0.00 45.49 2.29
123 124 1.137479 AGCAGCAGCAGCAAAGAAAAA 59.863 42.857 12.92 0.00 45.49 1.94
124 125 1.525619 GCAGCAGCAGCAAAGAAAAAG 59.474 47.619 4.63 0.00 45.49 2.27
125 126 2.800629 GCAGCAGCAGCAAAGAAAAAGA 60.801 45.455 4.63 0.00 45.49 2.52
126 127 3.450578 CAGCAGCAGCAAAGAAAAAGAA 58.549 40.909 3.17 0.00 45.49 2.52
127 128 3.866910 CAGCAGCAGCAAAGAAAAAGAAA 59.133 39.130 3.17 0.00 45.49 2.52
128 129 4.330620 CAGCAGCAGCAAAGAAAAAGAAAA 59.669 37.500 3.17 0.00 45.49 2.29
129 130 4.569564 AGCAGCAGCAAAGAAAAAGAAAAG 59.430 37.500 3.17 0.00 45.49 2.27
130 131 4.260497 GCAGCAGCAAAGAAAAAGAAAAGG 60.260 41.667 0.00 0.00 41.58 3.11
131 132 5.111293 CAGCAGCAAAGAAAAAGAAAAGGA 58.889 37.500 0.00 0.00 0.00 3.36
132 133 5.581874 CAGCAGCAAAGAAAAAGAAAAGGAA 59.418 36.000 0.00 0.00 0.00 3.36
133 134 5.814188 AGCAGCAAAGAAAAAGAAAAGGAAG 59.186 36.000 0.00 0.00 0.00 3.46
134 135 5.582269 GCAGCAAAGAAAAAGAAAAGGAAGT 59.418 36.000 0.00 0.00 0.00 3.01
135 136 6.756542 GCAGCAAAGAAAAAGAAAAGGAAGTA 59.243 34.615 0.00 0.00 0.00 2.24
136 137 7.043125 GCAGCAAAGAAAAAGAAAAGGAAGTAG 60.043 37.037 0.00 0.00 0.00 2.57
137 138 6.980978 AGCAAAGAAAAAGAAAAGGAAGTAGC 59.019 34.615 0.00 0.00 0.00 3.58
138 139 6.980978 GCAAAGAAAAAGAAAAGGAAGTAGCT 59.019 34.615 0.00 0.00 0.00 3.32
139 140 7.492669 GCAAAGAAAAAGAAAAGGAAGTAGCTT 59.507 33.333 0.00 0.00 0.00 3.74
144 145 9.245962 GAAAAAGAAAAGGAAGTAGCTTAAACC 57.754 33.333 0.00 0.00 0.00 3.27
145 146 8.534954 AAAAGAAAAGGAAGTAGCTTAAACCT 57.465 30.769 0.00 0.00 0.00 3.50
146 147 7.747155 AAGAAAAGGAAGTAGCTTAAACCTC 57.253 36.000 0.00 0.00 0.00 3.85
147 148 6.838382 AGAAAAGGAAGTAGCTTAAACCTCA 58.162 36.000 0.00 0.00 0.00 3.86
148 149 6.711194 AGAAAAGGAAGTAGCTTAAACCTCAC 59.289 38.462 0.00 0.00 0.00 3.51
149 150 4.189639 AGGAAGTAGCTTAAACCTCACG 57.810 45.455 0.00 0.00 0.00 4.35
150 151 2.671888 GGAAGTAGCTTAAACCTCACGC 59.328 50.000 0.00 0.00 0.00 5.34
151 152 2.381725 AGTAGCTTAAACCTCACGCC 57.618 50.000 0.00 0.00 0.00 5.68
152 153 1.066358 AGTAGCTTAAACCTCACGCCC 60.066 52.381 0.00 0.00 0.00 6.13
153 154 0.108520 TAGCTTAAACCTCACGCCCG 60.109 55.000 0.00 0.00 0.00 6.13
154 155 3.035576 GCTTAAACCTCACGCCCGC 62.036 63.158 0.00 0.00 0.00 6.13
155 156 1.669760 CTTAAACCTCACGCCCGCA 60.670 57.895 0.00 0.00 0.00 5.69
156 157 1.635663 CTTAAACCTCACGCCCGCAG 61.636 60.000 0.00 0.00 0.00 5.18
187 188 5.956642 CGTAGCTTCCTAGAAGTTTCTTCT 58.043 41.667 14.89 14.89 38.70 2.85
188 189 6.391537 CGTAGCTTCCTAGAAGTTTCTTCTT 58.608 40.000 15.56 1.34 38.70 2.52
189 190 6.869388 CGTAGCTTCCTAGAAGTTTCTTCTTT 59.131 38.462 15.56 0.00 38.70 2.52
190 191 7.148722 CGTAGCTTCCTAGAAGTTTCTTCTTTG 60.149 40.741 15.56 9.95 38.70 2.77
191 192 6.831976 AGCTTCCTAGAAGTTTCTTCTTTGA 58.168 36.000 15.56 10.49 38.70 2.69
192 193 6.934083 AGCTTCCTAGAAGTTTCTTCTTTGAG 59.066 38.462 15.56 8.47 38.70 3.02
193 194 6.348132 GCTTCCTAGAAGTTTCTTCTTTGAGC 60.348 42.308 15.56 14.83 38.70 4.26
194 195 6.174720 TCCTAGAAGTTTCTTCTTTGAGCA 57.825 37.500 15.56 0.00 38.70 4.26
195 196 6.773638 TCCTAGAAGTTTCTTCTTTGAGCAT 58.226 36.000 15.56 0.00 38.70 3.79
196 197 6.876257 TCCTAGAAGTTTCTTCTTTGAGCATC 59.124 38.462 15.56 0.00 38.70 3.91
197 198 6.878389 CCTAGAAGTTTCTTCTTTGAGCATCT 59.122 38.462 15.56 0.00 38.70 2.90
198 199 8.037758 CCTAGAAGTTTCTTCTTTGAGCATCTA 58.962 37.037 15.56 0.00 38.70 1.98
199 200 7.665561 AGAAGTTTCTTCTTTGAGCATCTAC 57.334 36.000 6.24 0.00 32.55 2.59
200 201 6.367422 AGAAGTTTCTTCTTTGAGCATCTACG 59.633 38.462 6.24 0.00 32.55 3.51
201 202 5.784177 AGTTTCTTCTTTGAGCATCTACGA 58.216 37.500 0.00 0.00 34.92 3.43
202 203 5.635700 AGTTTCTTCTTTGAGCATCTACGAC 59.364 40.000 0.00 0.00 34.92 4.34
203 204 4.111375 TCTTCTTTGAGCATCTACGACC 57.889 45.455 0.00 0.00 34.92 4.79
204 205 2.961526 TCTTTGAGCATCTACGACCC 57.038 50.000 0.00 0.00 34.92 4.46
205 206 1.480954 TCTTTGAGCATCTACGACCCC 59.519 52.381 0.00 0.00 34.92 4.95
206 207 0.174845 TTTGAGCATCTACGACCCCG 59.825 55.000 0.00 0.00 37.73 5.73
207 208 1.672854 TTGAGCATCTACGACCCCGG 61.673 60.000 0.00 0.00 36.50 5.73
208 209 3.501458 GAGCATCTACGACCCCGGC 62.501 68.421 0.00 0.00 40.78 6.13
209 210 4.603946 GCATCTACGACCCCGGCC 62.604 72.222 0.00 0.00 40.78 6.13
210 211 3.925090 CATCTACGACCCCGGCCC 61.925 72.222 0.00 0.00 40.78 5.80
223 224 3.327404 GGCCCCCTCCAGTTCGAA 61.327 66.667 0.00 0.00 0.00 3.71
224 225 2.046217 GCCCCCTCCAGTTCGAAC 60.046 66.667 20.71 20.71 0.00 3.95
225 226 2.669240 CCCCCTCCAGTTCGAACC 59.331 66.667 24.22 7.13 0.00 3.62
226 227 2.221299 CCCCCTCCAGTTCGAACCA 61.221 63.158 24.22 8.24 0.00 3.67
227 228 1.003718 CCCCTCCAGTTCGAACCAC 60.004 63.158 24.22 0.43 0.00 4.16
228 229 1.003718 CCCTCCAGTTCGAACCACC 60.004 63.158 24.22 0.00 0.00 4.61
229 230 1.481056 CCCTCCAGTTCGAACCACCT 61.481 60.000 24.22 3.10 0.00 4.00
230 231 0.037232 CCTCCAGTTCGAACCACCTC 60.037 60.000 24.22 0.00 0.00 3.85
231 232 0.969894 CTCCAGTTCGAACCACCTCT 59.030 55.000 24.22 1.90 0.00 3.69
232 233 0.679505 TCCAGTTCGAACCACCTCTG 59.320 55.000 24.22 14.36 0.00 3.35
233 234 0.320771 CCAGTTCGAACCACCTCTGG 60.321 60.000 24.22 19.14 44.26 3.86
234 235 0.320771 CAGTTCGAACCACCTCTGGG 60.321 60.000 24.22 0.18 42.74 4.45
235 236 1.003718 GTTCGAACCACCTCTGGGG 60.004 63.158 17.68 0.00 42.74 4.96
236 237 1.152204 TTCGAACCACCTCTGGGGA 60.152 57.895 0.00 0.00 42.74 4.81
237 238 0.546747 TTCGAACCACCTCTGGGGAT 60.547 55.000 0.00 0.00 42.74 3.85
238 239 1.221840 CGAACCACCTCTGGGGATG 59.778 63.158 0.00 0.00 42.74 3.51
239 240 1.264749 CGAACCACCTCTGGGGATGA 61.265 60.000 0.00 0.00 42.74 2.92
240 241 1.216990 GAACCACCTCTGGGGATGAT 58.783 55.000 0.00 0.00 42.74 2.45
241 242 2.408565 GAACCACCTCTGGGGATGATA 58.591 52.381 0.00 0.00 42.74 2.15
242 243 2.587060 ACCACCTCTGGGGATGATAA 57.413 50.000 0.00 0.00 42.74 1.75
243 244 2.412591 ACCACCTCTGGGGATGATAAG 58.587 52.381 0.00 0.00 42.74 1.73
244 245 1.701847 CCACCTCTGGGGATGATAAGG 59.298 57.143 0.00 0.00 38.76 2.69
245 246 2.412591 CACCTCTGGGGATGATAAGGT 58.587 52.381 0.00 0.00 37.61 3.50
246 247 2.780010 CACCTCTGGGGATGATAAGGTT 59.220 50.000 0.00 0.00 34.97 3.50
247 248 3.203040 CACCTCTGGGGATGATAAGGTTT 59.797 47.826 0.00 0.00 34.97 3.27
248 249 3.858638 ACCTCTGGGGATGATAAGGTTTT 59.141 43.478 0.00 0.00 33.39 2.43
249 250 5.043762 ACCTCTGGGGATGATAAGGTTTTA 58.956 41.667 0.00 0.00 33.39 1.52
250 251 5.104067 ACCTCTGGGGATGATAAGGTTTTAC 60.104 44.000 0.00 0.00 33.39 2.01
251 252 5.031066 TCTGGGGATGATAAGGTTTTACG 57.969 43.478 0.00 0.00 0.00 3.18
252 253 4.472108 TCTGGGGATGATAAGGTTTTACGT 59.528 41.667 0.00 0.00 0.00 3.57
253 254 5.662208 TCTGGGGATGATAAGGTTTTACGTA 59.338 40.000 0.00 0.00 0.00 3.57
254 255 5.920903 TGGGGATGATAAGGTTTTACGTAG 58.079 41.667 0.00 0.00 0.00 3.51
256 257 6.610830 TGGGGATGATAAGGTTTTACGTAGTA 59.389 38.462 0.00 0.00 45.11 1.82
257 258 7.150640 GGGGATGATAAGGTTTTACGTAGTAG 58.849 42.308 0.00 0.00 46.93 2.57
258 259 7.150640 GGGATGATAAGGTTTTACGTAGTAGG 58.849 42.308 0.00 0.00 46.93 3.18
259 260 7.201947 GGGATGATAAGGTTTTACGTAGTAGGT 60.202 40.741 0.00 0.55 46.93 3.08
260 261 7.650903 GGATGATAAGGTTTTACGTAGTAGGTG 59.349 40.741 5.76 0.00 46.93 4.00
261 262 7.701539 TGATAAGGTTTTACGTAGTAGGTGA 57.298 36.000 5.76 0.00 46.93 4.02
262 263 7.765307 TGATAAGGTTTTACGTAGTAGGTGAG 58.235 38.462 5.76 0.00 46.93 3.51
263 264 5.397142 AAGGTTTTACGTAGTAGGTGAGG 57.603 43.478 5.76 0.00 46.93 3.86
264 265 3.194329 AGGTTTTACGTAGTAGGTGAGGC 59.806 47.826 5.76 0.00 46.93 4.70
265 266 3.515630 GTTTTACGTAGTAGGTGAGGCC 58.484 50.000 5.76 0.00 46.93 5.19
266 267 2.814805 TTACGTAGTAGGTGAGGCCT 57.185 50.000 3.86 3.86 46.93 5.19
267 268 3.091633 TTACGTAGTAGGTGAGGCCTT 57.908 47.619 6.77 0.00 46.93 4.35
268 269 2.756760 TTACGTAGTAGGTGAGGCCTTG 59.243 50.000 6.77 0.00 46.93 3.61
269 270 4.989334 TTACGTAGTAGGTGAGGCCTTGC 61.989 52.174 6.77 2.23 46.93 4.01
288 289 4.899239 CCCTGCGGTCGAGCATCC 62.899 72.222 15.89 2.77 46.97 3.51
298 299 3.554692 GAGCATCCGACGCCGTTG 61.555 66.667 0.00 0.00 0.00 4.10
299 300 3.982372 GAGCATCCGACGCCGTTGA 62.982 63.158 5.94 0.00 0.00 3.18
300 301 3.554692 GCATCCGACGCCGTTGAG 61.555 66.667 5.94 0.00 0.00 3.02
301 302 3.554692 CATCCGACGCCGTTGAGC 61.555 66.667 5.94 0.00 0.00 4.26
309 310 3.423154 GCCGTTGAGCGTTGAGGG 61.423 66.667 0.00 0.00 39.32 4.30
310 311 2.342279 CCGTTGAGCGTTGAGGGA 59.658 61.111 0.00 0.00 39.32 4.20
311 312 1.738099 CCGTTGAGCGTTGAGGGAG 60.738 63.158 0.00 0.00 39.32 4.30
312 313 1.289066 CGTTGAGCGTTGAGGGAGA 59.711 57.895 0.00 0.00 35.54 3.71
313 314 0.734253 CGTTGAGCGTTGAGGGAGAG 60.734 60.000 0.00 0.00 35.54 3.20
314 315 0.603569 GTTGAGCGTTGAGGGAGAGA 59.396 55.000 0.00 0.00 0.00 3.10
315 316 1.205893 GTTGAGCGTTGAGGGAGAGAT 59.794 52.381 0.00 0.00 0.00 2.75
316 317 1.561643 TGAGCGTTGAGGGAGAGATT 58.438 50.000 0.00 0.00 0.00 2.40
317 318 1.902508 TGAGCGTTGAGGGAGAGATTT 59.097 47.619 0.00 0.00 0.00 2.17
318 319 2.303022 TGAGCGTTGAGGGAGAGATTTT 59.697 45.455 0.00 0.00 0.00 1.82
319 320 2.933260 GAGCGTTGAGGGAGAGATTTTC 59.067 50.000 0.00 0.00 0.00 2.29
320 321 2.010497 GCGTTGAGGGAGAGATTTTCC 58.990 52.381 0.00 0.00 0.00 3.13
332 333 7.703058 GGAGAGATTTTCCCTTCAAACATAA 57.297 36.000 0.00 0.00 0.00 1.90
333 334 8.298729 GGAGAGATTTTCCCTTCAAACATAAT 57.701 34.615 0.00 0.00 0.00 1.28
334 335 9.408648 GGAGAGATTTTCCCTTCAAACATAATA 57.591 33.333 0.00 0.00 0.00 0.98
344 345 9.048446 TCCCTTCAAACATAATAATACTAACGC 57.952 33.333 0.00 0.00 0.00 4.84
345 346 8.287503 CCCTTCAAACATAATAATACTAACGCC 58.712 37.037 0.00 0.00 0.00 5.68
346 347 8.832521 CCTTCAAACATAATAATACTAACGCCA 58.167 33.333 0.00 0.00 0.00 5.69
362 363 8.862550 ACTAACGCCATATACTGTACTAAAAC 57.137 34.615 0.00 0.00 0.00 2.43
363 364 6.817270 AACGCCATATACTGTACTAAAACG 57.183 37.500 0.00 0.00 0.00 3.60
364 365 4.741676 ACGCCATATACTGTACTAAAACGC 59.258 41.667 0.00 0.00 0.00 4.84
365 366 4.143680 CGCCATATACTGTACTAAAACGCG 60.144 45.833 3.53 3.53 0.00 6.01
366 367 4.741676 GCCATATACTGTACTAAAACGCGT 59.258 41.667 5.58 5.58 0.00 6.01
367 368 5.108103 GCCATATACTGTACTAAAACGCGTC 60.108 44.000 14.44 0.00 0.00 5.19
368 369 5.400485 CCATATACTGTACTAAAACGCGTCC 59.600 44.000 14.44 0.00 0.00 4.79
369 370 2.070262 ACTGTACTAAAACGCGTCCC 57.930 50.000 14.44 0.00 0.00 4.46
370 371 1.340889 ACTGTACTAAAACGCGTCCCA 59.659 47.619 14.44 0.00 0.00 4.37
371 372 2.224018 ACTGTACTAAAACGCGTCCCAA 60.224 45.455 14.44 0.00 0.00 4.12
372 373 2.134346 TGTACTAAAACGCGTCCCAAC 58.866 47.619 14.44 7.33 0.00 3.77
381 382 2.030562 CGTCCCAACGCTCAACCT 59.969 61.111 0.00 0.00 42.82 3.50
382 383 2.027625 CGTCCCAACGCTCAACCTC 61.028 63.158 0.00 0.00 42.82 3.85
383 384 2.027625 GTCCCAACGCTCAACCTCG 61.028 63.158 0.00 0.00 0.00 4.63
384 385 3.423154 CCCAACGCTCAACCTCGC 61.423 66.667 0.00 0.00 0.00 5.03
385 386 3.423154 CCAACGCTCAACCTCGCC 61.423 66.667 0.00 0.00 0.00 5.54
386 387 2.357517 CAACGCTCAACCTCGCCT 60.358 61.111 0.00 0.00 0.00 5.52
387 388 2.048127 AACGCTCAACCTCGCCTC 60.048 61.111 0.00 0.00 0.00 4.70
388 389 2.574955 AACGCTCAACCTCGCCTCT 61.575 57.895 0.00 0.00 0.00 3.69
389 390 2.202676 CGCTCAACCTCGCCTCTC 60.203 66.667 0.00 0.00 0.00 3.20
390 391 2.185608 GCTCAACCTCGCCTCTCC 59.814 66.667 0.00 0.00 0.00 3.71
391 392 2.355193 GCTCAACCTCGCCTCTCCT 61.355 63.158 0.00 0.00 0.00 3.69
392 393 1.813192 CTCAACCTCGCCTCTCCTC 59.187 63.158 0.00 0.00 0.00 3.71
393 394 0.682855 CTCAACCTCGCCTCTCCTCT 60.683 60.000 0.00 0.00 0.00 3.69
394 395 0.681564 TCAACCTCGCCTCTCCTCTC 60.682 60.000 0.00 0.00 0.00 3.20
395 396 1.380650 AACCTCGCCTCTCCTCTCC 60.381 63.158 0.00 0.00 0.00 3.71
396 397 1.869824 AACCTCGCCTCTCCTCTCCT 61.870 60.000 0.00 0.00 0.00 3.69
397 398 1.528309 CCTCGCCTCTCCTCTCCTC 60.528 68.421 0.00 0.00 0.00 3.71
398 399 1.531748 CTCGCCTCTCCTCTCCTCT 59.468 63.158 0.00 0.00 0.00 3.69
399 400 0.535102 CTCGCCTCTCCTCTCCTCTC 60.535 65.000 0.00 0.00 0.00 3.20
400 401 1.528309 CGCCTCTCCTCTCCTCTCC 60.528 68.421 0.00 0.00 0.00 3.71
401 402 1.930520 GCCTCTCCTCTCCTCTCCT 59.069 63.158 0.00 0.00 0.00 3.69
402 403 0.178990 GCCTCTCCTCTCCTCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71
403 404 0.478507 CCTCTCCTCTCCTCTCCTCC 59.521 65.000 0.00 0.00 0.00 4.30
404 405 0.478507 CTCTCCTCTCCTCTCCTCCC 59.521 65.000 0.00 0.00 0.00 4.30
405 406 0.996762 TCTCCTCTCCTCTCCTCCCC 60.997 65.000 0.00 0.00 0.00 4.81
406 407 0.998945 CTCCTCTCCTCTCCTCCCCT 60.999 65.000 0.00 0.00 0.00 4.79
407 408 0.996762 TCCTCTCCTCTCCTCCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
408 409 1.541672 CTCTCCTCTCCTCCCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
414 415 4.179599 CTCCTCCCCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
459 460 2.183300 CGAATGCGACCGGGAGAA 59.817 61.111 6.32 0.00 40.82 2.87
512 516 1.720694 CTCCTCCTCCTTCGCGAGTC 61.721 65.000 9.59 0.00 0.00 3.36
513 517 2.776913 CCTCCTCCTTCGCGAGTCC 61.777 68.421 9.59 0.00 0.00 3.85
514 518 1.751162 CTCCTCCTTCGCGAGTCCT 60.751 63.158 9.59 0.00 0.00 3.85
515 519 1.720694 CTCCTCCTTCGCGAGTCCTC 61.721 65.000 9.59 0.00 0.00 3.71
516 520 1.751162 CCTCCTTCGCGAGTCCTCT 60.751 63.158 9.59 0.00 0.00 3.69
517 521 1.720694 CCTCCTTCGCGAGTCCTCTC 61.721 65.000 9.59 0.00 37.35 3.20
518 522 1.720694 CTCCTTCGCGAGTCCTCTCC 61.721 65.000 9.59 0.00 37.40 3.71
519 523 2.776913 CCTTCGCGAGTCCTCTCCC 61.777 68.421 9.59 0.00 37.40 4.30
520 524 3.114647 CTTCGCGAGTCCTCTCCCG 62.115 68.421 9.59 0.00 41.55 5.14
523 527 4.816984 GCGAGTCCTCTCCCGGGA 62.817 72.222 25.06 25.06 37.40 5.14
524 528 2.196229 CGAGTCCTCTCCCGGGAT 59.804 66.667 27.07 7.95 37.40 3.85
536 540 1.144936 CCGGGATTCAGGTCTGCTC 59.855 63.158 0.00 0.00 0.00 4.26
539 543 1.144936 GGATTCAGGTCTGCTCGGG 59.855 63.158 0.00 0.00 0.00 5.14
566 571 1.079405 CGGGCGGCTTCTGTTTAGA 60.079 57.895 9.56 0.00 0.00 2.10
589 594 3.917760 CCCCTCCCTCGTCATCGC 61.918 72.222 0.00 0.00 36.96 4.58
593 598 3.471244 CTCCCTCGTCATCGCCGTC 62.471 68.421 0.00 0.00 36.96 4.79
594 599 4.570663 CCCTCGTCATCGCCGTCC 62.571 72.222 0.00 0.00 36.96 4.79
595 600 4.570663 CCTCGTCATCGCCGTCCC 62.571 72.222 0.00 0.00 36.96 4.46
596 601 4.570663 CTCGTCATCGCCGTCCCC 62.571 72.222 0.00 0.00 36.96 4.81
598 603 4.143333 CGTCATCGCCGTCCCCTT 62.143 66.667 0.00 0.00 0.00 3.95
601 606 3.470888 CATCGCCGTCCCCTTCCT 61.471 66.667 0.00 0.00 0.00 3.36
602 607 3.470888 ATCGCCGTCCCCTTCCTG 61.471 66.667 0.00 0.00 0.00 3.86
612 617 2.283894 CCTTCCTGGGGTTTGGCC 60.284 66.667 0.00 0.00 0.00 5.36
613 618 2.676471 CTTCCTGGGGTTTGGCCG 60.676 66.667 0.00 0.00 38.44 6.13
614 619 4.293671 TTCCTGGGGTTTGGCCGG 62.294 66.667 0.00 0.00 38.44 6.13
620 625 3.238497 GGGTTTGGCCGGCCTTTT 61.238 61.111 43.34 0.00 38.44 2.27
722 728 0.039527 GGTCGCTTGGTTCGCATTTT 60.040 50.000 0.00 0.00 0.00 1.82
724 730 0.110419 TCGCTTGGTTCGCATTTTCG 60.110 50.000 0.00 0.00 0.00 3.46
729 735 3.488489 CTTGGTTCGCATTTTCGTAAGG 58.512 45.455 0.00 0.00 38.47 2.69
741 747 5.821516 TTTTCGTAAGGTTTTGCTCTCAA 57.178 34.783 0.00 0.00 38.47 3.02
759 765 4.940046 TCTCAATTTTGACAGGATCAGCTC 59.060 41.667 0.00 0.00 38.99 4.09
826 837 1.743958 CGTGATTCCGGACTGTCTACT 59.256 52.381 1.83 0.00 0.00 2.57
828 839 3.242673 CGTGATTCCGGACTGTCTACTAC 60.243 52.174 1.83 0.00 0.00 2.73
829 840 3.693085 GTGATTCCGGACTGTCTACTACA 59.307 47.826 1.83 0.00 36.42 2.74
830 841 4.157289 GTGATTCCGGACTGTCTACTACAA 59.843 45.833 1.83 0.00 37.74 2.41
832 843 4.778534 TTCCGGACTGTCTACTACAAAG 57.221 45.455 1.83 0.00 37.74 2.77
840 855 4.106029 TGTCTACTACAAAGCGTCATCC 57.894 45.455 0.00 0.00 34.29 3.51
844 859 2.960819 ACTACAAAGCGTCATCCTGAC 58.039 47.619 0.00 0.00 43.65 3.51
889 919 2.668550 CTGCTGCTGCTGCTGTCA 60.669 61.111 27.67 17.18 39.81 3.58
905 935 4.222114 GCTGTCAGTAACATCTTTGTTGC 58.778 43.478 0.93 0.60 45.56 4.17
912 942 3.825143 AACATCTTTGTTGCTGCCTTT 57.175 38.095 0.00 0.00 44.36 3.11
961 998 3.138653 TCCTTTGGTGCCAGGTTTACTAA 59.861 43.478 0.00 0.00 0.00 2.24
969 1006 3.154710 GCCAGGTTTACTAAAGCCAAGT 58.845 45.455 7.04 0.00 38.39 3.16
974 1011 4.139038 GGTTTACTAAAGCCAAGTCACCA 58.861 43.478 0.00 0.00 36.08 4.17
1013 1050 3.750599 CGGGGAAATATGGGCAATGTACT 60.751 47.826 0.00 0.00 0.00 2.73
1048 1085 3.316308 ACATGTTTTCCAGACAGCTCAAC 59.684 43.478 0.00 0.00 0.00 3.18
1086 1123 2.151202 GTTGCGGAGGAAACATTCAGA 58.849 47.619 0.00 0.00 41.38 3.27
1100 1137 5.084818 ACATTCAGATTATGTGACGTGGA 57.915 39.130 0.00 0.00 35.03 4.02
1118 1155 4.167268 GTGGATCGTCTGTCTCAAGTTAC 58.833 47.826 0.00 0.00 0.00 2.50
1188 1225 1.299089 CACGACGTGCTGTGTCTCA 60.299 57.895 16.06 0.00 34.17 3.27
1204 1241 1.277557 TCTCAGCTGAAAGGAGAAGCC 59.722 52.381 18.85 0.00 37.68 4.35
1250 1287 0.036732 GGTGATGTTCCAGAGTGGCA 59.963 55.000 0.00 0.00 37.47 4.92
1341 1378 7.292356 TCACATATGTATATGGAAACTGAGGGT 59.708 37.037 8.32 0.00 43.38 4.34
1402 1439 0.516877 CATTGTACGCCACCACACAG 59.483 55.000 0.00 0.00 0.00 3.66
1523 1562 7.500559 GGTTATCAGCATCAAGTATTCCTTCTT 59.499 37.037 0.00 0.00 0.00 2.52
1530 1569 9.336171 AGCATCAAGTATTCCTTCTTCTTATTC 57.664 33.333 0.00 0.00 0.00 1.75
1545 1584 3.964688 TCTTATTCATTGCTCCCTCCGTA 59.035 43.478 0.00 0.00 0.00 4.02
1662 1732 5.431765 AGTATGCCTCTTATTGTGGTTCAG 58.568 41.667 0.00 0.00 0.00 3.02
1686 1756 9.499479 CAGACCTGAATAGCATCTTATATTTGT 57.501 33.333 0.00 0.00 0.00 2.83
1717 1787 9.476202 GAGTGGCAAATAGTTAAAAGTTCAAAT 57.524 29.630 0.00 0.00 0.00 2.32
1770 1840 2.096268 CGACCAGCATTGTACAACACAG 60.096 50.000 11.22 2.91 38.72 3.66
1857 1927 5.491982 CCAGTTCTTTAGTAAGGCAGATGT 58.508 41.667 0.00 0.00 32.02 3.06
1880 1950 8.231692 TGTTCTGTTCAATTCCTTGTAATGAA 57.768 30.769 0.00 0.00 33.87 2.57
2207 2280 8.893727 CACCCTATAGAAATTCTCGTGAAAATT 58.106 33.333 0.00 3.00 35.63 1.82
2211 2284 9.941664 CTATAGAAATTCTCGTGAAAATTGCAT 57.058 29.630 0.00 2.18 35.63 3.96
2225 2298 6.422701 TGAAAATTGCATTTCTTCTCAGCAAG 59.577 34.615 12.67 0.00 46.73 4.01
2377 2450 5.222213 ACATCTGGGAGTCTTTCAGGAAAAT 60.222 40.000 0.00 0.00 0.00 1.82
2401 2474 0.768221 GGCAGTATGGGGGATCCTCA 60.768 60.000 15.23 12.14 35.86 3.86
2404 2477 0.194587 AGTATGGGGGATCCTCAGGG 59.805 60.000 15.23 0.00 36.20 4.45
2435 2508 2.037641 TCACTCAGTGACATGTTCCCTG 59.962 50.000 2.36 6.90 37.67 4.45
2452 2525 3.011821 TCCCTGGTAGACTCAGTGAAGAT 59.988 47.826 0.00 0.00 0.00 2.40
2469 2542 8.607459 CAGTGAAGATTATCCATAGTCACAAAC 58.393 37.037 0.00 0.00 37.07 2.93
2502 2575 4.290711 TCTTTTGCTCCTGATGATGACA 57.709 40.909 0.00 0.00 0.00 3.58
2641 2714 6.782494 AGTCATTTAAAGGGGAAGACAAATGT 59.218 34.615 0.00 0.00 35.74 2.71
2665 2738 4.080695 TCTGTTAGATGATTTGCTGCCTCT 60.081 41.667 0.00 0.00 0.00 3.69
2682 2755 3.734293 GCCTCTGCAGCATCTTGATTTTC 60.734 47.826 9.47 0.00 37.47 2.29
2761 2834 2.348411 GCTTGGAAGCCAGCCTTATA 57.652 50.000 0.00 0.00 46.20 0.98
2764 2837 3.638627 GCTTGGAAGCCAGCCTTATATTT 59.361 43.478 0.00 0.00 46.20 1.40
2989 3062 1.479709 TGTTTGTGTTTGTGGGGAGG 58.520 50.000 0.00 0.00 0.00 4.30
2997 3070 0.178992 TTTGTGGGGAGGTTCAGCAG 60.179 55.000 0.00 0.00 0.00 4.24
3053 3126 3.262151 TGGTGGACACGATATTTGAAGGA 59.738 43.478 0.00 0.00 0.00 3.36
3073 3146 1.625818 AGGAACTGGACAGCCTACTTG 59.374 52.381 0.00 0.00 37.18 3.16
3094 3167 5.019657 TGTCCTTCCCTTTCTCCTTAGTA 57.980 43.478 0.00 0.00 0.00 1.82
3121 3194 9.607333 TCCATAGATTAGACTATCAAGTGGAAT 57.393 33.333 0.00 0.00 35.56 3.01
3198 3271 3.328288 CTTGGAGCGCGCCTTTTCC 62.328 63.158 30.49 27.45 0.00 3.13
3283 3356 8.542926 CCCATTTTTGAAGAAGATAGGGAAAAT 58.457 33.333 0.00 0.00 34.49 1.82
3351 3441 4.872691 AGATGGTTTGAGATGCGAGTTAAG 59.127 41.667 0.00 0.00 0.00 1.85
3414 3504 3.449018 CCTTGTCTGTATGTAGGCTGTCT 59.551 47.826 0.00 0.00 0.00 3.41
3417 3507 3.696548 TGTCTGTATGTAGGCTGTCTCAG 59.303 47.826 0.00 0.00 34.12 3.35
3469 3559 5.913514 GCATCATGCATTTTCATCTCTGTAC 59.086 40.000 4.20 0.00 44.26 2.90
3571 3661 4.416738 GCTGGCCACCTCCCTGTC 62.417 72.222 0.00 0.00 0.00 3.51
3628 3718 2.362369 CGTCTCCATGGAGGTGCCT 61.362 63.158 35.95 0.00 42.20 4.75
3681 3771 3.664025 CTTCTGCCGTGGGATCGCA 62.664 63.158 8.63 8.63 0.00 5.10
3696 3799 0.037326 TCGCATGGTCTCGAAGCTTT 60.037 50.000 0.00 0.00 0.00 3.51
3850 3960 2.693591 GACAGGGACGACAATGAGGATA 59.306 50.000 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.788766 CAGCGCCAAGTACACCGC 61.789 66.667 2.29 10.20 46.14 5.68
2 3 2.048597 TCAGCGCCAAGTACACCG 60.049 61.111 2.29 0.00 0.00 4.94
3 4 2.033194 GGTCAGCGCCAAGTACACC 61.033 63.158 2.29 0.00 0.00 4.16
4 5 2.380410 CGGTCAGCGCCAAGTACAC 61.380 63.158 2.29 0.00 0.00 2.90
5 6 2.048597 CGGTCAGCGCCAAGTACA 60.049 61.111 2.29 0.00 0.00 2.90
6 7 2.813908 CCGGTCAGCGCCAAGTAC 60.814 66.667 2.29 0.00 0.00 2.73
7 8 4.752879 GCCGGTCAGCGCCAAGTA 62.753 66.667 2.29 0.00 0.00 2.24
15 16 3.941657 GAGTCTGTGGCCGGTCAGC 62.942 68.421 10.28 5.17 0.00 4.26
16 17 2.262915 GAGTCTGTGGCCGGTCAG 59.737 66.667 10.28 12.96 0.00 3.51
17 18 2.523168 TGAGTCTGTGGCCGGTCA 60.523 61.111 3.51 3.51 0.00 4.02
18 19 1.248785 TACTGAGTCTGTGGCCGGTC 61.249 60.000 12.54 0.00 0.00 4.79
19 20 1.228769 TACTGAGTCTGTGGCCGGT 60.229 57.895 12.54 0.00 0.00 5.28
20 21 1.215647 GTACTGAGTCTGTGGCCGG 59.784 63.158 12.54 0.00 0.00 6.13
21 22 1.154016 CGTACTGAGTCTGTGGCCG 60.154 63.158 12.54 8.22 0.00 6.13
22 23 1.215647 CCGTACTGAGTCTGTGGCC 59.784 63.158 12.54 0.00 0.00 5.36
23 24 0.109226 GTCCGTACTGAGTCTGTGGC 60.109 60.000 12.54 5.03 0.00 5.01
24 25 0.526662 GGTCCGTACTGAGTCTGTGG 59.473 60.000 12.54 6.56 0.00 4.17
25 26 1.244816 TGGTCCGTACTGAGTCTGTG 58.755 55.000 12.54 0.00 0.00 3.66
26 27 1.819288 CATGGTCCGTACTGAGTCTGT 59.181 52.381 7.86 7.86 0.00 3.41
27 28 1.469940 GCATGGTCCGTACTGAGTCTG 60.470 57.143 0.00 0.00 0.00 3.51
28 29 0.818296 GCATGGTCCGTACTGAGTCT 59.182 55.000 0.00 0.00 0.00 3.24
29 30 0.530744 TGCATGGTCCGTACTGAGTC 59.469 55.000 0.00 0.00 0.00 3.36
30 31 1.137086 GATGCATGGTCCGTACTGAGT 59.863 52.381 2.46 0.00 0.00 3.41
31 32 1.539065 GGATGCATGGTCCGTACTGAG 60.539 57.143 2.46 0.00 0.00 3.35
32 33 0.464036 GGATGCATGGTCCGTACTGA 59.536 55.000 2.46 0.00 0.00 3.41
33 34 0.532862 GGGATGCATGGTCCGTACTG 60.533 60.000 2.46 0.00 36.58 2.74
34 35 1.830145 GGGATGCATGGTCCGTACT 59.170 57.895 2.46 0.00 36.58 2.73
35 36 1.594293 CGGGATGCATGGTCCGTAC 60.594 63.158 18.91 0.00 37.92 3.67
36 37 1.744320 CTCGGGATGCATGGTCCGTA 61.744 60.000 23.37 14.01 42.71 4.02
37 38 3.080765 TCGGGATGCATGGTCCGT 61.081 61.111 23.37 0.00 42.71 4.69
38 39 2.280389 CTCGGGATGCATGGTCCG 60.280 66.667 20.33 20.33 43.42 4.79
39 40 1.227674 GTCTCGGGATGCATGGTCC 60.228 63.158 2.46 0.00 34.92 4.46
40 41 1.592669 CGTCTCGGGATGCATGGTC 60.593 63.158 2.46 0.00 0.00 4.02
41 42 2.501128 CGTCTCGGGATGCATGGT 59.499 61.111 2.46 0.00 0.00 3.55
42 43 2.280389 CCGTCTCGGGATGCATGG 60.280 66.667 2.46 0.00 44.15 3.66
52 53 2.791560 CACAAAGATATGCTCCGTCTCG 59.208 50.000 0.00 0.00 0.00 4.04
53 54 3.786635 ACACAAAGATATGCTCCGTCTC 58.213 45.455 0.00 0.00 0.00 3.36
54 55 3.895232 ACACAAAGATATGCTCCGTCT 57.105 42.857 0.00 0.00 0.00 4.18
55 56 5.348986 TCTAACACAAAGATATGCTCCGTC 58.651 41.667 0.00 0.00 0.00 4.79
56 57 5.339008 TCTAACACAAAGATATGCTCCGT 57.661 39.130 0.00 0.00 0.00 4.69
57 58 5.406780 GGATCTAACACAAAGATATGCTCCG 59.593 44.000 0.00 0.00 33.82 4.63
58 59 5.703130 GGGATCTAACACAAAGATATGCTCC 59.297 44.000 0.00 0.00 33.82 4.70
59 60 6.291377 TGGGATCTAACACAAAGATATGCTC 58.709 40.000 0.00 0.00 33.82 4.26
60 61 6.252599 TGGGATCTAACACAAAGATATGCT 57.747 37.500 0.00 0.00 33.82 3.79
61 62 6.569226 GCATGGGATCTAACACAAAGATATGC 60.569 42.308 0.00 0.00 36.53 3.14
62 63 6.713903 AGCATGGGATCTAACACAAAGATATG 59.286 38.462 0.00 0.00 33.82 1.78
63 64 6.845908 AGCATGGGATCTAACACAAAGATAT 58.154 36.000 0.00 0.00 33.82 1.63
64 65 6.252599 AGCATGGGATCTAACACAAAGATA 57.747 37.500 0.00 0.00 33.82 1.98
65 66 5.121380 AGCATGGGATCTAACACAAAGAT 57.879 39.130 0.00 0.00 36.40 2.40
66 67 4.574674 AGCATGGGATCTAACACAAAGA 57.425 40.909 0.00 0.00 0.00 2.52
67 68 5.431765 AGTAGCATGGGATCTAACACAAAG 58.568 41.667 0.00 0.00 0.00 2.77
68 69 5.435686 AGTAGCATGGGATCTAACACAAA 57.564 39.130 0.00 0.00 0.00 2.83
69 70 5.661312 ACTAGTAGCATGGGATCTAACACAA 59.339 40.000 0.00 0.00 0.00 3.33
70 71 5.208890 ACTAGTAGCATGGGATCTAACACA 58.791 41.667 0.00 0.00 0.00 3.72
71 72 5.793030 ACTAGTAGCATGGGATCTAACAC 57.207 43.478 0.00 0.00 0.00 3.32
72 73 6.611785 ACTACTAGTAGCATGGGATCTAACA 58.388 40.000 26.54 0.00 36.66 2.41
73 74 8.271312 CTACTACTAGTAGCATGGGATCTAAC 57.729 42.308 26.54 0.00 41.36 2.34
86 87 8.207873 GCTGCTGCTGCTACTACTACTAGTAG 62.208 50.000 25.30 25.30 45.20 2.57
87 88 5.032327 TGCTGCTGCTACTACTACTAGTA 57.968 43.478 17.00 1.89 40.48 1.82
88 89 3.880490 CTGCTGCTGCTACTACTACTAGT 59.120 47.826 17.00 0.00 40.48 2.57
89 90 3.304391 GCTGCTGCTGCTACTACTACTAG 60.304 52.174 22.10 2.79 40.48 2.57
90 91 2.619177 GCTGCTGCTGCTACTACTACTA 59.381 50.000 22.10 0.00 40.48 1.82
91 92 1.407258 GCTGCTGCTGCTACTACTACT 59.593 52.381 22.10 0.00 40.48 2.57
92 93 1.135139 TGCTGCTGCTGCTACTACTAC 59.865 52.381 27.67 1.33 40.48 2.73
93 94 1.406898 CTGCTGCTGCTGCTACTACTA 59.593 52.381 27.67 8.77 40.48 1.82
94 95 0.175302 CTGCTGCTGCTGCTACTACT 59.825 55.000 27.67 0.00 40.48 2.57
95 96 2.675519 CTGCTGCTGCTGCTACTAC 58.324 57.895 27.67 3.30 40.48 2.73
102 103 0.031585 TTTCTTTGCTGCTGCTGCTG 59.968 50.000 27.67 16.73 40.48 4.41
103 104 0.748450 TTTTCTTTGCTGCTGCTGCT 59.252 45.000 27.67 0.00 40.48 4.24
104 105 1.525619 CTTTTTCTTTGCTGCTGCTGC 59.474 47.619 22.51 22.51 40.48 5.25
105 106 3.088194 TCTTTTTCTTTGCTGCTGCTG 57.912 42.857 17.00 0.77 40.48 4.41
106 107 3.806625 TTCTTTTTCTTTGCTGCTGCT 57.193 38.095 17.00 0.00 40.48 4.24
107 108 4.260497 CCTTTTCTTTTTCTTTGCTGCTGC 60.260 41.667 8.89 8.89 40.20 5.25
108 109 5.111293 TCCTTTTCTTTTTCTTTGCTGCTG 58.889 37.500 0.00 0.00 0.00 4.41
109 110 5.343307 TCCTTTTCTTTTTCTTTGCTGCT 57.657 34.783 0.00 0.00 0.00 4.24
110 111 5.582269 ACTTCCTTTTCTTTTTCTTTGCTGC 59.418 36.000 0.00 0.00 0.00 5.25
111 112 7.043125 GCTACTTCCTTTTCTTTTTCTTTGCTG 60.043 37.037 0.00 0.00 0.00 4.41
112 113 6.980978 GCTACTTCCTTTTCTTTTTCTTTGCT 59.019 34.615 0.00 0.00 0.00 3.91
113 114 6.980978 AGCTACTTCCTTTTCTTTTTCTTTGC 59.019 34.615 0.00 0.00 0.00 3.68
114 115 8.932945 AAGCTACTTCCTTTTCTTTTTCTTTG 57.067 30.769 0.00 0.00 0.00 2.77
118 119 9.245962 GGTTTAAGCTACTTCCTTTTCTTTTTC 57.754 33.333 0.00 0.00 0.00 2.29
119 120 8.978472 AGGTTTAAGCTACTTCCTTTTCTTTTT 58.022 29.630 0.00 0.00 0.00 1.94
120 121 8.534954 AGGTTTAAGCTACTTCCTTTTCTTTT 57.465 30.769 0.00 0.00 0.00 2.27
121 122 7.778382 TGAGGTTTAAGCTACTTCCTTTTCTTT 59.222 33.333 0.00 0.00 0.00 2.52
122 123 7.228906 GTGAGGTTTAAGCTACTTCCTTTTCTT 59.771 37.037 0.00 0.00 0.00 2.52
123 124 6.711194 GTGAGGTTTAAGCTACTTCCTTTTCT 59.289 38.462 0.00 0.00 0.00 2.52
124 125 6.347483 CGTGAGGTTTAAGCTACTTCCTTTTC 60.347 42.308 0.00 0.00 0.00 2.29
125 126 5.469084 CGTGAGGTTTAAGCTACTTCCTTTT 59.531 40.000 0.00 0.00 0.00 2.27
126 127 4.995487 CGTGAGGTTTAAGCTACTTCCTTT 59.005 41.667 0.00 0.00 0.00 3.11
127 128 4.566987 CGTGAGGTTTAAGCTACTTCCTT 58.433 43.478 0.00 0.00 0.00 3.36
128 129 3.616802 GCGTGAGGTTTAAGCTACTTCCT 60.617 47.826 0.00 0.00 0.00 3.36
129 130 2.671888 GCGTGAGGTTTAAGCTACTTCC 59.328 50.000 0.00 0.00 0.00 3.46
130 131 2.671888 GGCGTGAGGTTTAAGCTACTTC 59.328 50.000 0.00 0.00 0.00 3.01
131 132 2.614734 GGGCGTGAGGTTTAAGCTACTT 60.615 50.000 0.00 0.00 0.00 2.24
132 133 1.066358 GGGCGTGAGGTTTAAGCTACT 60.066 52.381 0.00 0.00 0.00 2.57
133 134 1.366679 GGGCGTGAGGTTTAAGCTAC 58.633 55.000 0.00 0.00 0.00 3.58
134 135 0.108520 CGGGCGTGAGGTTTAAGCTA 60.109 55.000 0.00 0.00 0.00 3.32
135 136 1.375523 CGGGCGTGAGGTTTAAGCT 60.376 57.895 0.00 0.00 0.00 3.74
136 137 3.035576 GCGGGCGTGAGGTTTAAGC 62.036 63.158 0.00 0.00 0.00 3.09
137 138 1.635663 CTGCGGGCGTGAGGTTTAAG 61.636 60.000 0.00 0.00 0.00 1.85
138 139 1.669760 CTGCGGGCGTGAGGTTTAA 60.670 57.895 0.00 0.00 0.00 1.52
139 140 2.047655 CTGCGGGCGTGAGGTTTA 60.048 61.111 0.00 0.00 0.00 2.01
156 157 1.450531 TAGGAAGCTACGCCTACGGC 61.451 60.000 5.96 0.00 46.75 5.68
157 158 0.592148 CTAGGAAGCTACGCCTACGG 59.408 60.000 5.96 0.00 46.04 4.02
159 160 2.950975 ACTTCTAGGAAGCTACGCCTAC 59.049 50.000 7.14 0.00 35.73 3.18
160 161 3.294038 ACTTCTAGGAAGCTACGCCTA 57.706 47.619 7.14 8.97 35.73 3.93
161 162 2.146920 ACTTCTAGGAAGCTACGCCT 57.853 50.000 7.14 7.72 38.31 5.52
162 163 2.963548 AACTTCTAGGAAGCTACGCC 57.036 50.000 7.14 0.00 0.00 5.68
163 164 4.112716 AGAAACTTCTAGGAAGCTACGC 57.887 45.455 7.14 0.00 35.34 4.42
164 165 5.956642 AGAAGAAACTTCTAGGAAGCTACG 58.043 41.667 11.57 0.00 36.28 3.51
165 166 7.873505 TCAAAGAAGAAACTTCTAGGAAGCTAC 59.126 37.037 13.25 0.00 36.28 3.58
166 167 7.963532 TCAAAGAAGAAACTTCTAGGAAGCTA 58.036 34.615 13.25 0.00 36.28 3.32
167 168 6.831976 TCAAAGAAGAAACTTCTAGGAAGCT 58.168 36.000 13.25 0.00 36.28 3.74
168 169 6.348132 GCTCAAAGAAGAAACTTCTAGGAAGC 60.348 42.308 13.25 14.43 36.28 3.86
169 170 6.708054 TGCTCAAAGAAGAAACTTCTAGGAAG 59.292 38.462 13.25 5.83 36.28 3.46
170 171 6.591935 TGCTCAAAGAAGAAACTTCTAGGAA 58.408 36.000 13.25 1.69 36.28 3.36
171 172 6.174720 TGCTCAAAGAAGAAACTTCTAGGA 57.825 37.500 13.25 12.25 36.28 2.94
172 173 6.878389 AGATGCTCAAAGAAGAAACTTCTAGG 59.122 38.462 13.25 9.29 36.28 3.02
173 174 7.903995 AGATGCTCAAAGAAGAAACTTCTAG 57.096 36.000 13.25 9.12 36.28 2.43
174 175 7.542477 CGTAGATGCTCAAAGAAGAAACTTCTA 59.458 37.037 13.25 0.00 36.28 2.10
175 176 6.367422 CGTAGATGCTCAAAGAAGAAACTTCT 59.633 38.462 8.02 8.02 39.74 2.85
176 177 6.366332 TCGTAGATGCTCAAAGAAGAAACTTC 59.634 38.462 0.00 0.00 0.00 3.01
177 178 6.146347 GTCGTAGATGCTCAAAGAAGAAACTT 59.854 38.462 0.00 0.00 40.67 2.66
178 179 5.635700 GTCGTAGATGCTCAAAGAAGAAACT 59.364 40.000 0.00 0.00 40.67 2.66
179 180 5.163943 GGTCGTAGATGCTCAAAGAAGAAAC 60.164 44.000 0.00 0.00 40.67 2.78
180 181 4.929808 GGTCGTAGATGCTCAAAGAAGAAA 59.070 41.667 0.00 0.00 40.67 2.52
181 182 4.495422 GGTCGTAGATGCTCAAAGAAGAA 58.505 43.478 0.00 0.00 40.67 2.52
182 183 3.119101 GGGTCGTAGATGCTCAAAGAAGA 60.119 47.826 0.00 0.00 40.67 2.87
183 184 3.190874 GGGTCGTAGATGCTCAAAGAAG 58.809 50.000 0.00 0.00 40.67 2.85
184 185 2.093658 GGGGTCGTAGATGCTCAAAGAA 60.094 50.000 0.00 0.00 40.67 2.52
185 186 1.480954 GGGGTCGTAGATGCTCAAAGA 59.519 52.381 0.00 0.00 40.67 2.52
186 187 1.802880 CGGGGTCGTAGATGCTCAAAG 60.803 57.143 0.00 0.00 40.67 2.77
187 188 0.174845 CGGGGTCGTAGATGCTCAAA 59.825 55.000 0.00 0.00 40.67 2.69
188 189 1.672854 CCGGGGTCGTAGATGCTCAA 61.673 60.000 0.00 0.00 40.67 3.02
189 190 2.125326 CCGGGGTCGTAGATGCTCA 61.125 63.158 0.00 0.00 40.67 4.26
190 191 2.728817 CCGGGGTCGTAGATGCTC 59.271 66.667 0.00 0.00 40.67 4.26
191 192 3.537874 GCCGGGGTCGTAGATGCT 61.538 66.667 2.18 0.00 40.67 3.79
192 193 4.603946 GGCCGGGGTCGTAGATGC 62.604 72.222 2.18 0.00 40.67 3.91
193 194 3.925090 GGGCCGGGGTCGTAGATG 61.925 72.222 2.18 0.00 40.67 2.90
206 207 3.327404 TTCGAACTGGAGGGGGCC 61.327 66.667 0.00 0.00 0.00 5.80
207 208 2.046217 GTTCGAACTGGAGGGGGC 60.046 66.667 20.97 0.00 0.00 5.80
208 209 2.221299 TGGTTCGAACTGGAGGGGG 61.221 63.158 26.32 0.00 0.00 5.40
209 210 1.003718 GTGGTTCGAACTGGAGGGG 60.004 63.158 26.32 0.00 0.00 4.79
210 211 1.003718 GGTGGTTCGAACTGGAGGG 60.004 63.158 26.32 0.00 0.00 4.30
211 212 0.037232 GAGGTGGTTCGAACTGGAGG 60.037 60.000 26.32 0.00 0.00 4.30
212 213 0.969894 AGAGGTGGTTCGAACTGGAG 59.030 55.000 26.32 0.00 0.00 3.86
213 214 0.679505 CAGAGGTGGTTCGAACTGGA 59.320 55.000 26.32 9.38 0.00 3.86
214 215 0.320771 CCAGAGGTGGTTCGAACTGG 60.321 60.000 26.32 20.26 39.30 4.00
215 216 0.320771 CCCAGAGGTGGTTCGAACTG 60.321 60.000 26.32 15.66 43.23 3.16
216 217 1.481056 CCCCAGAGGTGGTTCGAACT 61.481 60.000 26.32 7.89 43.23 3.01
217 218 1.003718 CCCCAGAGGTGGTTCGAAC 60.004 63.158 20.14 20.14 43.23 3.95
218 219 0.546747 ATCCCCAGAGGTGGTTCGAA 60.547 55.000 0.00 0.00 43.23 3.71
219 220 1.080354 ATCCCCAGAGGTGGTTCGA 59.920 57.895 0.00 0.00 43.23 3.71
220 221 1.221840 CATCCCCAGAGGTGGTTCG 59.778 63.158 0.00 0.00 43.23 3.95
221 222 1.216990 ATCATCCCCAGAGGTGGTTC 58.783 55.000 0.00 0.00 43.23 3.62
222 223 2.587060 TATCATCCCCAGAGGTGGTT 57.413 50.000 0.00 0.00 43.23 3.67
223 224 2.412591 CTTATCATCCCCAGAGGTGGT 58.587 52.381 0.00 0.00 43.23 4.16
224 225 1.701847 CCTTATCATCCCCAGAGGTGG 59.298 57.143 0.00 0.00 44.56 4.61
225 226 2.412591 ACCTTATCATCCCCAGAGGTG 58.587 52.381 0.00 0.00 36.23 4.00
226 227 2.897823 ACCTTATCATCCCCAGAGGT 57.102 50.000 0.00 0.00 36.75 3.85
227 228 4.526438 AAAACCTTATCATCCCCAGAGG 57.474 45.455 0.00 0.00 0.00 3.69
228 229 5.057149 CGTAAAACCTTATCATCCCCAGAG 58.943 45.833 0.00 0.00 0.00 3.35
229 230 4.472108 ACGTAAAACCTTATCATCCCCAGA 59.528 41.667 0.00 0.00 0.00 3.86
230 231 4.777463 ACGTAAAACCTTATCATCCCCAG 58.223 43.478 0.00 0.00 0.00 4.45
231 232 4.847990 ACGTAAAACCTTATCATCCCCA 57.152 40.909 0.00 0.00 0.00 4.96
232 233 5.922053 ACTACGTAAAACCTTATCATCCCC 58.078 41.667 0.00 0.00 0.00 4.81
233 234 7.150640 CCTACTACGTAAAACCTTATCATCCC 58.849 42.308 0.00 0.00 0.00 3.85
234 235 7.650903 CACCTACTACGTAAAACCTTATCATCC 59.349 40.741 0.00 0.00 0.00 3.51
235 236 8.408601 TCACCTACTACGTAAAACCTTATCATC 58.591 37.037 0.00 0.00 0.00 2.92
236 237 8.297470 TCACCTACTACGTAAAACCTTATCAT 57.703 34.615 0.00 0.00 0.00 2.45
237 238 7.148018 CCTCACCTACTACGTAAAACCTTATCA 60.148 40.741 0.00 0.00 0.00 2.15
238 239 7.199078 CCTCACCTACTACGTAAAACCTTATC 58.801 42.308 0.00 0.00 0.00 1.75
239 240 6.406288 GCCTCACCTACTACGTAAAACCTTAT 60.406 42.308 0.00 0.00 0.00 1.73
240 241 5.105756 GCCTCACCTACTACGTAAAACCTTA 60.106 44.000 0.00 0.00 0.00 2.69
241 242 4.322273 GCCTCACCTACTACGTAAAACCTT 60.322 45.833 0.00 0.00 0.00 3.50
242 243 3.194329 GCCTCACCTACTACGTAAAACCT 59.806 47.826 0.00 0.00 0.00 3.50
243 244 3.515630 GCCTCACCTACTACGTAAAACC 58.484 50.000 0.00 0.00 0.00 3.27
244 245 3.515630 GGCCTCACCTACTACGTAAAAC 58.484 50.000 0.00 0.00 34.51 2.43
245 246 3.874392 GGCCTCACCTACTACGTAAAA 57.126 47.619 0.00 0.00 34.51 1.52
281 282 3.554692 CAACGGCGTCGGATGCTC 61.555 66.667 15.17 10.61 41.39 4.26
282 283 3.989698 CTCAACGGCGTCGGATGCT 62.990 63.158 15.17 0.04 41.39 3.79
283 284 3.554692 CTCAACGGCGTCGGATGC 61.555 66.667 15.17 13.77 41.39 3.91
284 285 3.554692 GCTCAACGGCGTCGGATG 61.555 66.667 15.17 13.08 41.39 3.51
295 296 0.603569 TCTCTCCCTCAACGCTCAAC 59.396 55.000 0.00 0.00 0.00 3.18
296 297 1.561643 ATCTCTCCCTCAACGCTCAA 58.438 50.000 0.00 0.00 0.00 3.02
297 298 1.561643 AATCTCTCCCTCAACGCTCA 58.438 50.000 0.00 0.00 0.00 4.26
298 299 2.682155 AAATCTCTCCCTCAACGCTC 57.318 50.000 0.00 0.00 0.00 5.03
299 300 2.355209 GGAAAATCTCTCCCTCAACGCT 60.355 50.000 0.00 0.00 0.00 5.07
300 301 2.010497 GGAAAATCTCTCCCTCAACGC 58.990 52.381 0.00 0.00 0.00 4.84
308 309 7.703058 TTATGTTTGAAGGGAAAATCTCTCC 57.297 36.000 0.00 0.00 0.00 3.71
318 319 9.048446 GCGTTAGTATTATTATGTTTGAAGGGA 57.952 33.333 0.00 0.00 0.00 4.20
319 320 8.287503 GGCGTTAGTATTATTATGTTTGAAGGG 58.712 37.037 0.00 0.00 0.00 3.95
320 321 8.832521 TGGCGTTAGTATTATTATGTTTGAAGG 58.167 33.333 0.00 0.00 0.00 3.46
336 337 9.950680 GTTTTAGTACAGTATATGGCGTTAGTA 57.049 33.333 0.00 0.00 0.00 1.82
337 338 7.645340 CGTTTTAGTACAGTATATGGCGTTAGT 59.355 37.037 0.00 0.00 0.00 2.24
338 339 7.357859 GCGTTTTAGTACAGTATATGGCGTTAG 60.358 40.741 0.00 0.00 0.00 2.34
339 340 6.417635 GCGTTTTAGTACAGTATATGGCGTTA 59.582 38.462 0.00 0.00 0.00 3.18
340 341 5.232838 GCGTTTTAGTACAGTATATGGCGTT 59.767 40.000 0.00 0.00 0.00 4.84
341 342 4.741676 GCGTTTTAGTACAGTATATGGCGT 59.258 41.667 0.00 0.00 0.00 5.68
342 343 4.143680 CGCGTTTTAGTACAGTATATGGCG 60.144 45.833 0.00 0.00 0.00 5.69
343 344 4.741676 ACGCGTTTTAGTACAGTATATGGC 59.258 41.667 5.58 0.00 0.00 4.40
344 345 5.400485 GGACGCGTTTTAGTACAGTATATGG 59.600 44.000 15.53 0.00 0.00 2.74
345 346 5.400485 GGGACGCGTTTTAGTACAGTATATG 59.600 44.000 15.53 0.00 0.00 1.78
346 347 5.067674 TGGGACGCGTTTTAGTACAGTATAT 59.932 40.000 15.53 0.00 0.00 0.86
347 348 4.397730 TGGGACGCGTTTTAGTACAGTATA 59.602 41.667 15.53 0.00 0.00 1.47
348 349 3.193267 TGGGACGCGTTTTAGTACAGTAT 59.807 43.478 15.53 0.00 0.00 2.12
349 350 2.556189 TGGGACGCGTTTTAGTACAGTA 59.444 45.455 15.53 0.00 0.00 2.74
350 351 1.340889 TGGGACGCGTTTTAGTACAGT 59.659 47.619 15.53 0.00 0.00 3.55
351 352 2.068837 TGGGACGCGTTTTAGTACAG 57.931 50.000 15.53 0.00 0.00 2.74
352 353 2.134346 GTTGGGACGCGTTTTAGTACA 58.866 47.619 15.53 2.16 0.00 2.90
353 354 1.124839 CGTTGGGACGCGTTTTAGTAC 59.875 52.381 15.53 6.65 43.03 2.73
354 355 1.417372 CGTTGGGACGCGTTTTAGTA 58.583 50.000 15.53 0.00 43.03 1.82
355 356 2.228115 CGTTGGGACGCGTTTTAGT 58.772 52.632 15.53 0.00 43.03 2.24
365 366 2.027625 CGAGGTTGAGCGTTGGGAC 61.028 63.158 0.00 0.00 0.00 4.46
366 367 2.342279 CGAGGTTGAGCGTTGGGA 59.658 61.111 0.00 0.00 0.00 4.37
367 368 3.423154 GCGAGGTTGAGCGTTGGG 61.423 66.667 0.00 0.00 0.00 4.12
368 369 3.423154 GGCGAGGTTGAGCGTTGG 61.423 66.667 0.00 0.00 0.00 3.77
369 370 2.357517 AGGCGAGGTTGAGCGTTG 60.358 61.111 0.00 0.00 0.00 4.10
370 371 2.048127 GAGGCGAGGTTGAGCGTT 60.048 61.111 0.00 0.00 0.00 4.84
371 372 2.992114 AGAGGCGAGGTTGAGCGT 60.992 61.111 0.00 0.00 0.00 5.07
372 373 2.202676 GAGAGGCGAGGTTGAGCG 60.203 66.667 0.00 0.00 0.00 5.03
373 374 2.185608 GGAGAGGCGAGGTTGAGC 59.814 66.667 0.00 0.00 0.00 4.26
374 375 0.682855 AGAGGAGAGGCGAGGTTGAG 60.683 60.000 0.00 0.00 0.00 3.02
375 376 0.681564 GAGAGGAGAGGCGAGGTTGA 60.682 60.000 0.00 0.00 0.00 3.18
376 377 1.671901 GGAGAGGAGAGGCGAGGTTG 61.672 65.000 0.00 0.00 0.00 3.77
377 378 1.380650 GGAGAGGAGAGGCGAGGTT 60.381 63.158 0.00 0.00 0.00 3.50
378 379 2.277404 GGAGAGGAGAGGCGAGGT 59.723 66.667 0.00 0.00 0.00 3.85
379 380 1.528309 GAGGAGAGGAGAGGCGAGG 60.528 68.421 0.00 0.00 0.00 4.63
380 381 0.535102 GAGAGGAGAGGAGAGGCGAG 60.535 65.000 0.00 0.00 0.00 5.03
381 382 1.529796 GAGAGGAGAGGAGAGGCGA 59.470 63.158 0.00 0.00 0.00 5.54
382 383 1.528309 GGAGAGGAGAGGAGAGGCG 60.528 68.421 0.00 0.00 0.00 5.52
383 384 0.178990 GAGGAGAGGAGAGGAGAGGC 60.179 65.000 0.00 0.00 0.00 4.70
384 385 0.478507 GGAGGAGAGGAGAGGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
385 386 0.478507 GGGAGGAGAGGAGAGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
386 387 0.996762 GGGGAGGAGAGGAGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
387 388 0.998945 AGGGGAGGAGAGGAGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
388 389 0.996762 GAGGGGAGGAGAGGAGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
389 390 1.541672 GAGGGGAGGAGAGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
390 391 1.541672 GGAGGGGAGGAGAGGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
391 392 2.015726 GGGAGGGGAGGAGAGGAGA 61.016 68.421 0.00 0.00 0.00 3.71
392 393 2.612251 GGGAGGGGAGGAGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
393 394 3.036959 GGGGAGGGGAGGAGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
394 395 3.039526 AGGGGAGGGGAGGAGAGG 61.040 72.222 0.00 0.00 0.00 3.69
395 396 2.612251 GAGGGGAGGGGAGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
396 397 3.036959 GGAGGGGAGGGGAGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
397 398 4.179599 GGGAGGGGAGGGGAGGAG 62.180 77.778 0.00 0.00 0.00 3.69
400 401 4.179599 GAGGGGAGGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
403 404 4.825679 GTGGAGGGGAGGGGAGGG 62.826 77.778 0.00 0.00 0.00 4.30
404 405 4.825679 GGTGGAGGGGAGGGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
459 460 4.778143 GCGCACCTTGGGATCGGT 62.778 66.667 0.30 0.00 31.21 4.69
482 483 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
483 484 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
485 486 0.556380 AAGGAGGAGGAGGAGGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
512 516 1.383248 ACCTGAATCCCGGGAGAGG 60.383 63.158 31.28 31.28 44.44 3.69
513 517 0.397816 AGACCTGAATCCCGGGAGAG 60.398 60.000 30.42 22.47 44.44 3.20
514 518 0.687757 CAGACCTGAATCCCGGGAGA 60.688 60.000 30.42 14.26 44.44 3.71
515 519 1.826024 CAGACCTGAATCCCGGGAG 59.174 63.158 30.42 17.37 44.44 4.30
516 520 2.367202 GCAGACCTGAATCCCGGGA 61.367 63.158 29.18 29.18 44.44 5.14
518 522 1.144936 GAGCAGACCTGAATCCCGG 59.855 63.158 0.00 0.00 0.00 5.73
519 523 1.227089 CGAGCAGACCTGAATCCCG 60.227 63.158 0.47 0.00 0.00 5.14
520 524 1.144936 CCGAGCAGACCTGAATCCC 59.855 63.158 0.47 0.00 0.00 3.85
521 525 1.144936 CCCGAGCAGACCTGAATCC 59.855 63.158 0.47 0.00 0.00 3.01
522 526 1.144936 CCCCGAGCAGACCTGAATC 59.855 63.158 0.47 0.00 0.00 2.52
523 527 2.370445 CCCCCGAGCAGACCTGAAT 61.370 63.158 0.47 0.00 0.00 2.57
524 528 3.003173 CCCCCGAGCAGACCTGAA 61.003 66.667 0.47 0.00 0.00 3.02
543 547 3.443045 CAGAAGCCGCCCGCAATT 61.443 61.111 0.00 0.00 41.38 2.32
545 549 4.947147 AACAGAAGCCGCCCGCAA 62.947 61.111 0.00 0.00 41.38 4.85
547 551 2.744709 TAAACAGAAGCCGCCCGC 60.745 61.111 0.00 0.00 37.98 6.13
566 571 4.798682 ACGAGGGAGGGGCGGAAT 62.799 66.667 0.00 0.00 0.00 3.01
595 600 2.283894 GGCCAAACCCCAGGAAGG 60.284 66.667 0.00 0.00 37.03 3.46
596 601 2.676471 CGGCCAAACCCCAGGAAG 60.676 66.667 2.24 0.00 33.26 3.46
603 608 2.813726 AAAAAGGCCGGCCAAACCC 61.814 57.895 45.13 19.46 38.92 4.11
604 609 2.825982 AAAAAGGCCGGCCAAACC 59.174 55.556 45.13 20.27 38.92 3.27
619 624 1.268640 CCCCGCGAACGAAAAGAAAAA 60.269 47.619 8.23 0.00 43.93 1.94
620 625 0.308376 CCCCGCGAACGAAAAGAAAA 59.692 50.000 8.23 0.00 43.93 2.29
702 708 1.862602 AAATGCGAACCAAGCGACCC 61.863 55.000 0.00 0.00 37.44 4.46
705 711 0.110419 CGAAAATGCGAACCAAGCGA 60.110 50.000 0.00 0.00 37.44 4.93
706 712 0.385473 ACGAAAATGCGAACCAAGCG 60.385 50.000 0.00 0.00 37.44 4.68
722 728 6.038825 TCAAAATTGAGAGCAAAACCTTACGA 59.961 34.615 0.00 0.00 37.59 3.43
724 730 6.978080 TGTCAAAATTGAGAGCAAAACCTTAC 59.022 34.615 0.00 0.00 37.98 2.34
729 735 5.591099 TCCTGTCAAAATTGAGAGCAAAAC 58.409 37.500 13.27 0.00 44.58 2.43
741 747 2.012673 GCGAGCTGATCCTGTCAAAAT 58.987 47.619 0.00 0.00 36.14 1.82
780 786 4.572571 ACACGGGCCAAAAGGCGA 62.573 61.111 4.39 0.00 43.60 5.54
840 855 1.226974 CGCACGGGTATCAGGTCAG 60.227 63.158 0.00 0.00 0.00 3.51
844 859 2.028125 ATCCACGCACGGGTATCAGG 62.028 60.000 0.00 0.00 0.00 3.86
905 935 7.951530 ACAAACATTTTTAGATCAAAGGCAG 57.048 32.000 0.00 0.00 0.00 4.85
944 981 2.510613 GCTTTAGTAAACCTGGCACCA 58.489 47.619 0.00 0.00 0.00 4.17
961 998 0.468029 CCTGGTTGGTGACTTGGCTT 60.468 55.000 0.00 0.00 0.00 4.35
974 1011 2.032681 GGCAGCTCGAACCTGGTT 59.967 61.111 12.82 12.82 0.00 3.67
1035 1072 1.202687 TGGTTCTGTTGAGCTGTCTGG 60.203 52.381 0.00 0.00 0.00 3.86
1064 1101 1.243902 GAATGTTTCCTCCGCAACCA 58.756 50.000 0.00 0.00 0.00 3.67
1100 1137 4.079970 TCTGGTAACTTGAGACAGACGAT 58.920 43.478 0.00 0.00 33.62 3.73
1188 1225 1.632409 TCATGGCTTCTCCTTTCAGCT 59.368 47.619 0.00 0.00 33.76 4.24
1204 1241 4.936891 TCAGACGATGGATAACTGTCATG 58.063 43.478 0.00 0.00 32.08 3.07
1250 1287 1.967779 CCCGGTTGGAAAAATGAAGGT 59.032 47.619 0.00 0.00 37.49 3.50
1341 1378 6.867519 TGGTCAGGTAAGATACATTCAAGA 57.132 37.500 0.00 0.00 0.00 3.02
1402 1439 0.109723 TAACCAGGACCAACAGCCAC 59.890 55.000 0.00 0.00 0.00 5.01
1523 1562 2.771943 ACGGAGGGAGCAATGAATAAGA 59.228 45.455 0.00 0.00 0.00 2.10
1530 1569 4.336889 TTTAGATACGGAGGGAGCAATG 57.663 45.455 0.00 0.00 0.00 2.82
1534 1573 5.243283 TCTTGTATTTAGATACGGAGGGAGC 59.757 44.000 0.00 0.00 40.85 4.70
1545 1584 7.871853 ACTGCAAAAACGTCTTGTATTTAGAT 58.128 30.769 10.89 0.00 0.00 1.98
1686 1756 7.787028 ACTTTTAACTATTTGCCACTCCAAAA 58.213 30.769 0.00 0.00 38.12 2.44
1725 1795 5.238868 GCGGTCTATTACATCTCTGTACTGA 59.761 44.000 2.21 2.21 37.58 3.41
1732 1802 2.553172 GGTCGCGGTCTATTACATCTCT 59.447 50.000 6.13 0.00 0.00 3.10
1738 1808 0.101759 TGCTGGTCGCGGTCTATTAC 59.898 55.000 6.13 0.00 43.27 1.89
1757 1827 6.449635 TTCAGAAAAGCTGTGTTGTACAAT 57.550 33.333 12.26 0.00 45.14 2.71
1770 1840 5.183140 TGGGCTGTTACTATTTCAGAAAAGC 59.817 40.000 0.00 2.49 0.00 3.51
1857 1927 8.463930 ACTTCATTACAAGGAATTGAACAGAA 57.536 30.769 0.00 0.00 0.00 3.02
2003 2073 4.405358 TCCAGTTCATTGAAAAGGCTGTTT 59.595 37.500 0.00 0.00 0.00 2.83
2090 2163 6.573094 GCCCTTTAATCAAACAGAGCAATTCT 60.573 38.462 0.00 0.00 36.25 2.40
2207 2280 3.442625 CCATCTTGCTGAGAAGAAATGCA 59.557 43.478 0.00 0.00 38.06 3.96
2211 2284 4.321718 CACTCCATCTTGCTGAGAAGAAA 58.678 43.478 0.00 0.00 38.06 2.52
2225 2298 1.895798 TCAGTGACAGACCACTCCATC 59.104 52.381 0.00 0.00 44.87 3.51
2377 2450 2.054799 GATCCCCCATACTGCCAACTA 58.945 52.381 0.00 0.00 0.00 2.24
2435 2508 6.716934 TGGATAATCTTCACTGAGTCTACC 57.283 41.667 0.00 0.00 0.00 3.18
2452 2525 7.333423 GCACTAACTGTTTGTGACTATGGATAA 59.667 37.037 29.95 0.00 33.95 1.75
2502 2575 2.568623 AGATTTCCAAACGAGTGGCT 57.431 45.000 4.50 0.00 38.68 4.75
2641 2714 4.592942 AGGCAGCAAATCATCTAACAGAA 58.407 39.130 0.00 0.00 0.00 3.02
2665 2738 5.068198 GGATAAGGAAAATCAAGATGCTGCA 59.932 40.000 4.13 4.13 0.00 4.41
2669 2742 6.949352 TCAGGATAAGGAAAATCAAGATGC 57.051 37.500 0.00 0.00 0.00 3.91
2761 2834 4.646492 ACCAAGACTTGCAACTCAGAAAAT 59.354 37.500 9.85 0.00 0.00 1.82
2764 2837 2.945008 CACCAAGACTTGCAACTCAGAA 59.055 45.455 9.85 0.00 0.00 3.02
2989 3062 5.514914 GCGCTATATATCTCTTCTGCTGAAC 59.485 44.000 0.00 0.00 0.00 3.18
2997 3070 6.677781 ACTCTCTGCGCTATATATCTCTTC 57.322 41.667 9.73 0.00 0.00 2.87
3053 3126 1.625818 CAAGTAGGCTGTCCAGTTCCT 59.374 52.381 0.00 0.00 33.74 3.36
3073 3146 5.070714 GGATACTAAGGAGAAAGGGAAGGAC 59.929 48.000 0.00 0.00 0.00 3.85
3094 3167 9.607333 TTCCACTTGATAGTCTAATCTATGGAT 57.393 33.333 6.44 0.00 34.61 3.41
3121 3194 9.567776 TGAGAAAAATCTTCACCTTATGTACAA 57.432 29.630 0.00 0.00 0.00 2.41
3130 3203 4.703897 TCGTGTGAGAAAAATCTTCACCT 58.296 39.130 1.87 0.00 0.00 4.00
3351 3441 8.166706 CGTCATACAAGGAATACAAACAAGTAC 58.833 37.037 0.00 0.00 0.00 2.73
3414 3504 3.907474 TGGGATAACACCTTCACTTCTGA 59.093 43.478 0.00 0.00 0.00 3.27
3417 3507 5.476945 ACAAATGGGATAACACCTTCACTTC 59.523 40.000 0.00 0.00 0.00 3.01
3462 3552 7.010552 GCACCATTAATCTACACTTGTACAGAG 59.989 40.741 0.00 0.00 0.00 3.35
3469 3559 5.415701 ACCTTGCACCATTAATCTACACTTG 59.584 40.000 0.00 0.00 0.00 3.16
3571 3661 2.202987 GACGAGGATGGCTGCAGG 60.203 66.667 17.12 0.00 0.00 4.85
3669 3759 2.588877 GACCATGCGATCCCACGG 60.589 66.667 0.00 0.00 0.00 4.94
3672 3762 1.326951 TTCGAGACCATGCGATCCCA 61.327 55.000 0.00 0.00 36.31 4.37
3681 3771 3.529533 CTCATCAAAGCTTCGAGACCAT 58.470 45.455 0.00 0.00 0.00 3.55
3696 3799 4.292643 TCTCCACATCTTCATCCTCATCA 58.707 43.478 0.00 0.00 0.00 3.07
4059 4203 2.506472 GGGAGCATCGAAGGGGAC 59.494 66.667 0.00 0.00 34.37 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.