Multiple sequence alignment - TraesCS2B01G041200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G041200 chr2B 100.000 6550 0 0 1 6550 18825101 18818552 0.000000e+00 12096.0
1 TraesCS2B01G041200 chr2B 89.646 734 69 5 3514 4245 31063059 31062331 0.000000e+00 928.0
2 TraesCS2B01G041200 chr2B 87.568 732 79 3 3514 4244 497851615 497852335 0.000000e+00 837.0
3 TraesCS2B01G041200 chr2B 91.331 496 40 3 3019 3512 31064162 31063668 0.000000e+00 675.0
4 TraesCS2B01G041200 chr2B 86.653 502 55 9 3017 3512 226516656 226516161 4.470000e-151 545.0
5 TraesCS2B01G041200 chr2B 85.630 508 46 19 3017 3512 637104802 637105294 5.860000e-140 508.0
6 TraesCS2B01G041200 chr2B 84.897 437 53 7 2568 2993 28147755 28147321 4.690000e-116 429.0
7 TraesCS2B01G041200 chr2D 89.499 2076 148 33 2 2025 12415820 12413763 0.000000e+00 2562.0
8 TraesCS2B01G041200 chr2D 95.328 1113 43 6 4904 6010 12413521 12412412 0.000000e+00 1759.0
9 TraesCS2B01G041200 chr2D 92.058 554 31 6 6008 6550 12412355 12411804 0.000000e+00 767.0
10 TraesCS2B01G041200 chr2D 83.795 722 93 15 3541 4245 548611774 548611060 0.000000e+00 664.0
11 TraesCS2B01G041200 chr2D 89.151 212 22 1 2054 2264 12413765 12413554 5.040000e-66 263.0
12 TraesCS2B01G041200 chr2D 96.875 32 1 0 2761 2792 6901114 6901145 3.000000e-03 54.7
13 TraesCS2B01G041200 chr6B 90.761 736 59 6 3514 4247 703108301 703107573 0.000000e+00 974.0
14 TraesCS2B01G041200 chr6B 90.489 736 66 3 3514 4247 703065688 703064955 0.000000e+00 968.0
15 TraesCS2B01G041200 chr6B 90.835 611 54 2 3638 4247 703016515 703015906 0.000000e+00 817.0
16 TraesCS2B01G041200 chr6B 89.780 499 43 7 3017 3512 703109431 703108938 3.330000e-177 632.0
17 TraesCS2B01G041200 chr6B 89.780 499 40 10 3017 3512 703066815 703066325 4.310000e-176 628.0
18 TraesCS2B01G041200 chr6B 89.047 493 44 9 3017 3505 703017502 703017016 2.610000e-168 603.0
19 TraesCS2B01G041200 chr6B 88.095 504 49 8 3017 3512 588079843 588080343 7.320000e-164 588.0
20 TraesCS2B01G041200 chr6B 76.953 256 51 6 2373 2621 666003265 666003011 8.860000e-29 139.0
21 TraesCS2B01G041200 chr5B 87.924 737 85 4 3514 4248 485879191 485878457 0.000000e+00 865.0
22 TraesCS2B01G041200 chr5B 90.377 530 43 3 4334 4859 625842579 625842054 0.000000e+00 689.0
23 TraesCS2B01G041200 chr5B 86.931 505 54 7 3019 3512 485880330 485879827 2.060000e-154 556.0
24 TraesCS2B01G041200 chr5B 90.204 245 19 2 4379 4622 214131781 214132021 1.370000e-81 315.0
25 TraesCS2B01G041200 chr5B 90.123 243 19 3 4625 4863 214131979 214132220 1.770000e-80 311.0
26 TraesCS2B01G041200 chr7B 87.256 667 71 8 3514 4173 130078488 130079147 0.000000e+00 749.0
27 TraesCS2B01G041200 chr7B 90.237 379 28 6 2623 2993 652167671 652167294 2.750000e-133 486.0
28 TraesCS2B01G041200 chr7B 84.699 366 40 3 2624 2989 92320413 92320064 1.040000e-92 351.0
29 TraesCS2B01G041200 chr7B 87.698 252 27 2 2374 2621 652167999 652167748 2.310000e-74 291.0
30 TraesCS2B01G041200 chr7B 82.734 139 16 7 2794 2924 652167671 652167533 4.150000e-22 117.0
31 TraesCS2B01G041200 chr1D 84.450 746 93 14 3514 4247 482917126 482917860 0.000000e+00 713.0
32 TraesCS2B01G041200 chr6D 83.978 724 89 20 3541 4247 345787794 345788507 0.000000e+00 669.0
33 TraesCS2B01G041200 chr5D 84.838 587 60 11 2380 2951 115654096 115653524 1.230000e-156 564.0
34 TraesCS2B01G041200 chr5D 87.368 95 6 2 2667 2760 115653640 115653551 3.230000e-18 104.0
35 TraesCS2B01G041200 chr3B 85.487 503 53 12 3019 3512 17977425 17976934 2.110000e-139 507.0
36 TraesCS2B01G041200 chr3B 90.252 318 26 2 4306 4622 217771067 217771380 1.700000e-110 411.0
37 TraesCS2B01G041200 chr3B 90.083 242 20 4 4625 4863 217771338 217771578 1.770000e-80 311.0
38 TraesCS2B01G041200 chr1A 90.566 318 25 2 4306 4622 103222089 103221776 3.650000e-112 416.0
39 TraesCS2B01G041200 chr1A 90.123 243 19 3 4625 4863 103221818 103221577 1.770000e-80 311.0
40 TraesCS2B01G041200 chr7A 90.252 318 26 2 4306 4622 115367621 115367308 1.700000e-110 411.0
41 TraesCS2B01G041200 chr7A 90.083 242 20 4 4625 4863 115367350 115367110 1.770000e-80 311.0
42 TraesCS2B01G041200 chr5A 89.796 294 25 2 4330 4622 36464222 36464511 8.020000e-99 372.0
43 TraesCS2B01G041200 chr5A 90.123 243 19 3 4625 4863 36464469 36464710 1.770000e-80 311.0
44 TraesCS2B01G041200 chr5A 79.476 458 70 19 5199 5640 687642930 687642481 2.970000e-78 303.0
45 TraesCS2B01G041200 chr4A 90.204 245 19 2 4379 4622 24494168 24493928 1.370000e-81 315.0
46 TraesCS2B01G041200 chr4A 90.083 242 20 3 4625 4863 24493970 24493730 1.770000e-80 311.0
47 TraesCS2B01G041200 chr4A 85.321 109 13 3 410 515 738938548 738938656 6.940000e-20 110.0
48 TraesCS2B01G041200 chr4A 78.286 175 32 5 465 637 147362728 147362558 2.500000e-19 108.0
49 TraesCS2B01G041200 chr2A 90.204 245 19 2 4379 4622 151211592 151211352 1.370000e-81 315.0
50 TraesCS2B01G041200 chr2A 86.992 123 11 2 4355 4477 546745783 546745666 4.120000e-27 134.0
51 TraesCS2B01G041200 chr4B 89.669 242 21 4 4625 4863 669154688 669154928 8.250000e-79 305.0
52 TraesCS2B01G041200 chr7D 89.732 224 18 3 2402 2621 584459262 584459040 1.390000e-71 281.0
53 TraesCS2B01G041200 chr7D 89.503 181 15 4 2666 2843 584458944 584458765 6.610000e-55 226.0
54 TraesCS2B01G041200 chr7D 96.970 33 1 0 2701 2733 584458319 584458287 1.000000e-03 56.5
55 TraesCS2B01G041200 chr6A 79.189 370 70 6 5244 5609 7596003 7595637 3.920000e-62 250.0
56 TraesCS2B01G041200 chrUn 75.445 281 41 18 4363 4622 366949283 366949010 1.930000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G041200 chr2B 18818552 18825101 6549 True 12096.00 12096 100.000000 1 6550 1 chr2B.!!$R1 6549
1 TraesCS2B01G041200 chr2B 497851615 497852335 720 False 837.00 837 87.568000 3514 4244 1 chr2B.!!$F1 730
2 TraesCS2B01G041200 chr2B 31062331 31064162 1831 True 801.50 928 90.488500 3019 4245 2 chr2B.!!$R4 1226
3 TraesCS2B01G041200 chr2D 12411804 12415820 4016 True 1337.75 2562 91.509000 2 6550 4 chr2D.!!$R2 6548
4 TraesCS2B01G041200 chr2D 548611060 548611774 714 True 664.00 664 83.795000 3541 4245 1 chr2D.!!$R1 704
5 TraesCS2B01G041200 chr6B 703107573 703109431 1858 True 803.00 974 90.270500 3017 4247 2 chr6B.!!$R4 1230
6 TraesCS2B01G041200 chr6B 703064955 703066815 1860 True 798.00 968 90.134500 3017 4247 2 chr6B.!!$R3 1230
7 TraesCS2B01G041200 chr6B 703015906 703017502 1596 True 710.00 817 89.941000 3017 4247 2 chr6B.!!$R2 1230
8 TraesCS2B01G041200 chr6B 588079843 588080343 500 False 588.00 588 88.095000 3017 3512 1 chr6B.!!$F1 495
9 TraesCS2B01G041200 chr5B 485878457 485880330 1873 True 710.50 865 87.427500 3019 4248 2 chr5B.!!$R2 1229
10 TraesCS2B01G041200 chr5B 625842054 625842579 525 True 689.00 689 90.377000 4334 4859 1 chr5B.!!$R1 525
11 TraesCS2B01G041200 chr7B 130078488 130079147 659 False 749.00 749 87.256000 3514 4173 1 chr7B.!!$F1 659
12 TraesCS2B01G041200 chr7B 652167294 652167999 705 True 298.00 486 86.889667 2374 2993 3 chr7B.!!$R2 619
13 TraesCS2B01G041200 chr1D 482917126 482917860 734 False 713.00 713 84.450000 3514 4247 1 chr1D.!!$F1 733
14 TraesCS2B01G041200 chr6D 345787794 345788507 713 False 669.00 669 83.978000 3541 4247 1 chr6D.!!$F1 706
15 TraesCS2B01G041200 chr5D 115653524 115654096 572 True 334.00 564 86.103000 2380 2951 2 chr5D.!!$R1 571
16 TraesCS2B01G041200 chr3B 217771067 217771578 511 False 361.00 411 90.167500 4306 4863 2 chr3B.!!$F1 557
17 TraesCS2B01G041200 chr1A 103221577 103222089 512 True 363.50 416 90.344500 4306 4863 2 chr1A.!!$R1 557
18 TraesCS2B01G041200 chr7A 115367110 115367621 511 True 361.00 411 90.167500 4306 4863 2 chr7A.!!$R1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 234 0.032217 ACATATGGGCTGGGTTTGGG 60.032 55.0 7.80 0.00 0.00 4.12 F
336 340 0.175989 CCTGGACGTCTTAGGGAAGC 59.824 60.0 23.37 4.12 32.21 3.86 F
490 497 0.392998 ATCCCACCTCGACATGCAAC 60.393 55.0 0.00 0.00 0.00 4.17 F
1382 1417 0.168568 GTCAACCCTCTCGTCGTCTC 59.831 60.0 0.00 0.00 0.00 3.36 F
1401 1436 0.255318 CCTCCTTCTTCAGCATGCCT 59.745 55.0 15.66 0.00 34.76 4.75 F
1975 2028 0.606604 TTCCTCCCTTCACAGTACGC 59.393 55.0 0.00 0.00 0.00 4.42 F
3512 3665 0.105964 TCTAGCTCTCCCGCTCCATT 60.106 55.0 0.00 0.00 41.30 3.16 F
4388 5207 0.108804 CTAATCACTCGCGGGTGTGT 60.109 55.0 36.02 26.48 38.48 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1056 1091 0.109597 GCATGTGGTTTTGGAGCTCG 60.110 55.000 7.83 0.0 0.00 5.03 R
1381 1416 0.254178 GGCATGCTGAAGAAGGAGGA 59.746 55.000 18.92 0.0 27.83 3.71 R
2425 2483 0.107214 CCTGCCCGCTTAATGAGGAA 60.107 55.000 0.00 0.0 37.90 3.36 R
2999 3140 0.812412 TAATTAGCCGAACCCTGCGC 60.812 55.000 0.00 0.0 0.00 6.09 R
3000 3141 1.202486 TCTAATTAGCCGAACCCTGCG 60.202 52.381 7.67 0.0 0.00 5.18 R
3622 4411 0.036010 CCTGTTCGAGGCCAACATCT 60.036 55.000 5.01 0.0 34.01 2.90 R
4867 5735 0.178068 TTCTGCCCAATCCTACGCTC 59.822 55.000 0.00 0.0 0.00 5.03 R
5943 6816 0.603975 GGCAGACCTTCAGTGGTGTC 60.604 60.000 0.00 0.0 41.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.517414 CCATGATGGCACGGGGAT 59.483 61.111 0.00 0.00 0.00 3.85
52 53 2.078044 ATGATGGCACGGGGATGGA 61.078 57.895 0.00 0.00 0.00 3.41
100 101 1.134560 GCGGTCAACACTACTCTAGGG 59.865 57.143 0.00 0.00 34.64 3.53
110 111 4.657039 ACACTACTCTAGGGTTTGGTTTGA 59.343 41.667 0.00 0.00 40.09 2.69
122 123 4.142381 GGTTTGGTTTGAGGTGATGATAGC 60.142 45.833 0.00 0.00 0.00 2.97
128 131 2.661718 TGAGGTGATGATAGCGTGGTA 58.338 47.619 0.00 0.00 0.00 3.25
145 148 4.220724 GTGGTATATGTGGGGTCAGACTA 58.779 47.826 0.00 0.00 0.00 2.59
149 152 0.983378 ATGTGGGGTCAGACTAGGCC 60.983 60.000 0.00 0.00 0.00 5.19
151 154 1.306141 TGGGGTCAGACTAGGCCAG 60.306 63.158 5.01 2.64 0.00 4.85
153 156 1.990060 GGGTCAGACTAGGCCAGCA 60.990 63.158 5.01 0.00 0.00 4.41
154 157 1.341156 GGGTCAGACTAGGCCAGCAT 61.341 60.000 5.01 0.00 0.00 3.79
172 175 2.203209 GGGATGGTCCGACATGGC 60.203 66.667 0.00 0.00 37.43 4.40
205 209 2.257207 CATCCGTACCACCCCATATCT 58.743 52.381 0.00 0.00 0.00 1.98
210 214 1.348036 GTACCACCCCATATCTGCTCC 59.652 57.143 0.00 0.00 0.00 4.70
212 216 0.109342 CCACCCCATATCTGCTCCAC 59.891 60.000 0.00 0.00 0.00 4.02
228 232 1.113788 CCACATATGGGCTGGGTTTG 58.886 55.000 7.80 0.00 43.04 2.93
229 233 1.113788 CACATATGGGCTGGGTTTGG 58.886 55.000 7.80 0.00 0.00 3.28
230 234 0.032217 ACATATGGGCTGGGTTTGGG 60.032 55.000 7.80 0.00 0.00 4.12
234 238 4.233558 GGGCTGGGTTTGGGGTGT 62.234 66.667 0.00 0.00 0.00 4.16
237 241 1.456705 GCTGGGTTTGGGGTGTCAA 60.457 57.895 0.00 0.00 0.00 3.18
249 253 1.535462 GGGTGTCAAACAATCTGGACG 59.465 52.381 0.00 0.00 33.04 4.79
257 261 1.234615 ACAATCTGGACGTTTGGGCG 61.235 55.000 0.00 0.00 37.94 6.13
258 262 1.674322 AATCTGGACGTTTGGGCGG 60.674 57.895 0.00 0.00 35.98 6.13
294 298 1.273211 ACAGGGTGGCCATTTTGCTAT 60.273 47.619 9.72 0.00 0.00 2.97
295 299 1.137479 CAGGGTGGCCATTTTGCTATG 59.863 52.381 9.72 0.00 0.00 2.23
310 314 0.532862 CTATGTGATGGTGACCGGGC 60.533 60.000 6.32 1.57 0.00 6.13
334 338 1.601419 CGCCTGGACGTCTTAGGGAA 61.601 60.000 28.38 5.12 32.15 3.97
336 340 0.175989 CCTGGACGTCTTAGGGAAGC 59.824 60.000 23.37 4.12 32.21 3.86
340 344 2.289444 TGGACGTCTTAGGGAAGCTTTG 60.289 50.000 16.46 0.00 32.21 2.77
351 355 1.248486 GAAGCTTTGAGGGGTCCAAC 58.752 55.000 0.00 0.00 0.00 3.77
353 357 0.402121 AGCTTTGAGGGGTCCAACTC 59.598 55.000 5.99 5.99 0.00 3.01
368 372 3.961408 TCCAACTCTAGATGCCCTAACTC 59.039 47.826 0.00 0.00 0.00 3.01
370 374 4.038642 CCAACTCTAGATGCCCTAACTCTC 59.961 50.000 0.00 0.00 0.00 3.20
380 384 3.006247 GCCCTAACTCTCTGCTTCTTTG 58.994 50.000 0.00 0.00 0.00 2.77
382 386 3.307339 CCCTAACTCTCTGCTTCTTTGCT 60.307 47.826 0.00 0.00 0.00 3.91
401 405 8.904834 TCTTTGCTTATGTTGTGTACCTAAAAA 58.095 29.630 0.00 0.00 0.00 1.94
413 417 4.354387 TGTACCTAAAAAGGTCATCCCCAA 59.646 41.667 0.00 0.00 42.99 4.12
453 460 6.354794 ACATGTAAGTACGCCATACCATAT 57.645 37.500 0.00 0.00 33.85 1.78
486 493 3.403038 GGATAAATCCCACCTCGACATG 58.597 50.000 0.00 0.00 41.20 3.21
490 497 0.392998 ATCCCACCTCGACATGCAAC 60.393 55.000 0.00 0.00 0.00 4.17
509 516 4.458397 CAACCATGCATGAGAATAGACCT 58.542 43.478 28.31 0.00 0.00 3.85
521 528 6.406370 TGAGAATAGACCTACCACAACATTG 58.594 40.000 0.00 0.00 0.00 2.82
538 545 8.504815 CACAACATTGAATTATGCATGGAAAAA 58.495 29.630 10.16 0.00 0.00 1.94
541 548 8.215926 ACATTGAATTATGCATGGAAAAATGG 57.784 30.769 10.16 2.85 0.00 3.16
543 550 8.679100 CATTGAATTATGCATGGAAAAATGGTT 58.321 29.630 10.16 0.00 0.00 3.67
544 551 7.846644 TGAATTATGCATGGAAAAATGGTTC 57.153 32.000 10.16 0.00 0.00 3.62
653 660 6.477053 TTGATTCTCATGTTTTTGACCCAA 57.523 33.333 0.00 0.00 0.00 4.12
654 661 6.477053 TGATTCTCATGTTTTTGACCCAAA 57.523 33.333 0.00 0.00 0.00 3.28
658 665 8.750515 ATTCTCATGTTTTTGACCCAAATTTT 57.249 26.923 0.00 0.00 33.19 1.82
671 678 8.986929 TGACCCAAATTTTTATCAACCAATTT 57.013 26.923 0.00 0.00 30.56 1.82
677 684 7.736447 AATTTTTATCAACCAATTTCGGCAA 57.264 28.000 0.00 0.00 0.00 4.52
680 687 3.742433 ATCAACCAATTTCGGCAACAA 57.258 38.095 0.00 0.00 0.00 2.83
682 689 1.520590 CAACCAATTTCGGCAACAACG 59.479 47.619 0.00 0.00 0.00 4.10
683 690 0.596341 ACCAATTTCGGCAACAACGC 60.596 50.000 0.00 0.00 0.00 4.84
684 691 1.604612 CCAATTTCGGCAACAACGCG 61.605 55.000 3.53 3.53 0.00 6.01
685 692 0.932585 CAATTTCGGCAACAACGCGT 60.933 50.000 5.58 5.58 0.00 6.01
706 713 6.335777 GCGTGGGTTATTCTCTAGTTTTCTA 58.664 40.000 0.00 0.00 0.00 2.10
730 737 3.998341 TGGTCGCAAGTACATTTACCTTC 59.002 43.478 0.00 0.00 39.48 3.46
731 738 4.251268 GGTCGCAAGTACATTTACCTTCT 58.749 43.478 0.00 0.00 39.48 2.85
734 741 6.369615 GGTCGCAAGTACATTTACCTTCTTTA 59.630 38.462 0.00 0.00 39.48 1.85
735 742 7.065443 GGTCGCAAGTACATTTACCTTCTTTAT 59.935 37.037 0.00 0.00 39.48 1.40
776 809 6.886178 AAGTTATGGTCATACCTTGGTAGT 57.114 37.500 5.71 0.00 39.58 2.73
785 818 8.387813 TGGTCATACCTTGGTAGTTAGATTTTT 58.612 33.333 5.71 0.00 39.58 1.94
859 892 7.726033 ACAGTTAGAGAAGTGAGGACAATAT 57.274 36.000 0.00 0.00 38.12 1.28
950 983 4.026310 GCTTTCATTTGCAGTGAAGTTGTG 60.026 41.667 13.94 7.26 36.96 3.33
975 1008 4.727475 GCTTAAGCAGCCTAACAAAAGAG 58.273 43.478 22.59 0.00 43.65 2.85
976 1009 4.216472 GCTTAAGCAGCCTAACAAAAGAGT 59.784 41.667 22.59 0.00 43.65 3.24
978 1011 4.574599 AAGCAGCCTAACAAAAGAGTTG 57.425 40.909 0.00 0.00 33.07 3.16
979 1012 3.555966 AGCAGCCTAACAAAAGAGTTGT 58.444 40.909 0.00 0.00 33.07 3.32
980 1013 3.565902 AGCAGCCTAACAAAAGAGTTGTC 59.434 43.478 0.00 0.00 33.07 3.18
989 1024 5.757850 ACAAAAGAGTTGTCAGCTTAAGG 57.242 39.130 4.29 0.00 0.00 2.69
995 1030 2.237392 AGTTGTCAGCTTAAGGCCTAGG 59.763 50.000 5.16 3.67 43.05 3.02
998 1033 1.065418 GTCAGCTTAAGGCCTAGGCAA 60.065 52.381 34.09 19.26 44.11 4.52
1020 1055 0.673644 TGACGCTTAAGCTCTTGGCC 60.674 55.000 24.33 0.00 43.05 5.36
1056 1091 0.892814 AGTTGCTCCAAGCTCTTGCC 60.893 55.000 4.17 0.00 42.97 4.52
1113 1148 1.227556 GTCGCTCAGGTGTGTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
1175 1210 1.449423 CCACCATCGCCAACATCGA 60.449 57.895 0.00 0.00 40.45 3.59
1257 1292 0.890683 CCACCTCTGGCATTTTCACC 59.109 55.000 0.00 0.00 0.00 4.02
1380 1415 1.154263 CGTCAACCCTCTCGTCGTC 60.154 63.158 0.00 0.00 0.00 4.20
1381 1416 1.575576 CGTCAACCCTCTCGTCGTCT 61.576 60.000 0.00 0.00 0.00 4.18
1382 1417 0.168568 GTCAACCCTCTCGTCGTCTC 59.831 60.000 0.00 0.00 0.00 3.36
1388 1423 0.393267 CCTCTCGTCGTCTCCTCCTT 60.393 60.000 0.00 0.00 0.00 3.36
1401 1436 0.255318 CCTCCTTCTTCAGCATGCCT 59.745 55.000 15.66 0.00 34.76 4.75
1498 1533 3.555324 TGGTGAGCAAGGACGCCA 61.555 61.111 0.00 0.00 43.10 5.69
1519 1554 1.563111 GTTCAACGACGTCCTCAACA 58.437 50.000 10.58 0.00 0.00 3.33
1617 1652 1.807886 GCTCGTCGATGTAGGTGGT 59.192 57.895 4.21 0.00 0.00 4.16
1798 1833 4.202161 CCGATGCTGTCTTACTCAAGGTAT 60.202 45.833 0.00 0.00 32.22 2.73
1799 1834 5.009710 CCGATGCTGTCTTACTCAAGGTATA 59.990 44.000 0.00 0.00 32.22 1.47
1833 1872 0.737715 AAGCGCACGGTCTCTTCATC 60.738 55.000 11.47 0.00 0.00 2.92
1852 1891 5.173664 TCATCAGTGTCTCACATGTGATTC 58.826 41.667 28.00 21.98 39.13 2.52
1860 1899 3.441222 TCTCACATGTGATTCATTGCACC 59.559 43.478 28.00 0.00 39.13 5.01
1887 1933 2.822764 ACTCACTCAAAACTGGTCGAC 58.177 47.619 7.13 7.13 0.00 4.20
1890 1936 2.933906 TCACTCAAAACTGGTCGACAAC 59.066 45.455 18.91 0.81 0.00 3.32
1925 1974 8.791605 CATTTATTTCGATTGTGATCAAGTGTG 58.208 33.333 0.00 0.00 36.97 3.82
1971 2024 4.470304 GGTATTAGTTCCTCCCTTCACAGT 59.530 45.833 0.00 0.00 0.00 3.55
1974 2027 1.893801 AGTTCCTCCCTTCACAGTACG 59.106 52.381 0.00 0.00 0.00 3.67
1975 2028 0.606604 TTCCTCCCTTCACAGTACGC 59.393 55.000 0.00 0.00 0.00 4.42
1979 2032 1.816835 CTCCCTTCACAGTACGCAGTA 59.183 52.381 0.00 0.00 45.11 2.74
1983 2036 3.427233 CCCTTCACAGTACGCAGTAGTAC 60.427 52.174 0.00 0.00 46.11 2.73
2000 2053 4.768807 AGTACTTAGATATCCAGGGCCT 57.231 45.455 0.00 0.00 0.00 5.19
2005 2058 5.833340 ACTTAGATATCCAGGGCCTACTAG 58.167 45.833 5.28 0.00 0.00 2.57
2020 2073 5.671493 GCCTACTAGCCATAAGAAAAGACA 58.329 41.667 0.00 0.00 0.00 3.41
2022 2075 6.640518 CCTACTAGCCATAAGAAAAGACACA 58.359 40.000 0.00 0.00 0.00 3.72
2023 2076 7.275920 CCTACTAGCCATAAGAAAAGACACAT 58.724 38.462 0.00 0.00 0.00 3.21
2024 2077 8.421784 CCTACTAGCCATAAGAAAAGACACATA 58.578 37.037 0.00 0.00 0.00 2.29
2025 2078 9.988815 CTACTAGCCATAAGAAAAGACACATAT 57.011 33.333 0.00 0.00 0.00 1.78
2027 2080 9.765795 ACTAGCCATAAGAAAAGACACATATAC 57.234 33.333 0.00 0.00 0.00 1.47
2028 2081 9.209175 CTAGCCATAAGAAAAGACACATATACC 57.791 37.037 0.00 0.00 0.00 2.73
2029 2082 6.998673 AGCCATAAGAAAAGACACATATACCC 59.001 38.462 0.00 0.00 0.00 3.69
2030 2083 6.770785 GCCATAAGAAAAGACACATATACCCA 59.229 38.462 0.00 0.00 0.00 4.51
2031 2084 7.448469 GCCATAAGAAAAGACACATATACCCAT 59.552 37.037 0.00 0.00 0.00 4.00
2044 2097 9.739276 ACACATATACCCATATTTAATGACAGG 57.261 33.333 0.00 0.00 0.00 4.00
2045 2098 9.958180 CACATATACCCATATTTAATGACAGGA 57.042 33.333 0.00 0.00 0.00 3.86
2049 2102 6.655078 ACCCATATTTAATGACAGGAATGC 57.345 37.500 0.00 0.00 0.00 3.56
2050 2103 6.135454 ACCCATATTTAATGACAGGAATGCA 58.865 36.000 0.00 0.00 0.00 3.96
2051 2104 6.783977 ACCCATATTTAATGACAGGAATGCAT 59.216 34.615 0.00 0.00 0.00 3.96
2052 2105 7.290714 ACCCATATTTAATGACAGGAATGCATT 59.709 33.333 12.83 12.83 36.35 3.56
2063 2116 4.818546 ACAGGAATGCATTATACAGCACTC 59.181 41.667 12.97 0.00 44.49 3.51
2073 2126 6.475727 GCATTATACAGCACTCGAAACTCTTA 59.524 38.462 0.00 0.00 0.00 2.10
2080 2133 3.424962 GCACTCGAAACTCTTATGTTGCC 60.425 47.826 0.00 0.00 0.00 4.52
2085 2138 4.759693 TCGAAACTCTTATGTTGCCACAAT 59.240 37.500 0.00 0.00 36.16 2.71
2087 2140 6.428465 TCGAAACTCTTATGTTGCCACAATTA 59.572 34.615 0.00 0.00 36.16 1.40
2088 2141 6.523201 CGAAACTCTTATGTTGCCACAATTAC 59.477 38.462 0.00 0.00 36.16 1.89
2135 2189 8.758829 AGAATAACCCCACTTCAAATTTTATCC 58.241 33.333 0.00 0.00 0.00 2.59
2155 2209 9.843334 TTTATCCGTGGACAAAAATTATGTAAC 57.157 29.630 0.00 0.15 0.00 2.50
2178 2232 6.784031 ACTTTATCCATTCTGAGGAAACTGT 58.216 36.000 0.00 0.00 44.43 3.55
2187 2241 8.960591 CCATTCTGAGGAAACTGTACAAATATT 58.039 33.333 0.00 0.00 44.43 1.28
2198 2252 8.904099 AACTGTACAAATATTATGCTCTACCC 57.096 34.615 0.00 0.00 0.00 3.69
2218 2272 3.488489 CCGAAAACGGTCATGATTGAAC 58.512 45.455 0.00 0.00 36.14 3.18
2219 2273 3.058570 CCGAAAACGGTCATGATTGAACA 60.059 43.478 0.00 0.00 39.72 3.18
2220 2274 4.151070 CGAAAACGGTCATGATTGAACAG 58.849 43.478 0.00 0.00 39.72 3.16
2221 2275 4.084066 CGAAAACGGTCATGATTGAACAGA 60.084 41.667 0.00 0.00 39.72 3.41
2222 2276 5.559991 CGAAAACGGTCATGATTGAACAGAA 60.560 40.000 0.00 0.00 39.72 3.02
2223 2277 5.766150 AAACGGTCATGATTGAACAGAAA 57.234 34.783 0.00 0.00 39.72 2.52
2224 2278 5.362556 AACGGTCATGATTGAACAGAAAG 57.637 39.130 0.00 0.00 39.72 2.62
2225 2279 4.641396 ACGGTCATGATTGAACAGAAAGA 58.359 39.130 0.00 0.00 39.72 2.52
2226 2280 5.248640 ACGGTCATGATTGAACAGAAAGAT 58.751 37.500 0.00 0.00 39.72 2.40
2227 2281 5.707298 ACGGTCATGATTGAACAGAAAGATT 59.293 36.000 0.00 0.00 39.72 2.40
2228 2282 6.207417 ACGGTCATGATTGAACAGAAAGATTT 59.793 34.615 0.00 0.00 39.72 2.17
2229 2283 6.525628 CGGTCATGATTGAACAGAAAGATTTG 59.474 38.462 0.00 0.00 39.72 2.32
2230 2284 7.573656 CGGTCATGATTGAACAGAAAGATTTGA 60.574 37.037 0.00 0.00 39.72 2.69
2231 2285 7.754027 GGTCATGATTGAACAGAAAGATTTGAG 59.246 37.037 0.00 0.00 39.52 3.02
2232 2286 7.754027 GTCATGATTGAACAGAAAGATTTGAGG 59.246 37.037 0.00 0.00 32.48 3.86
2233 2287 6.579666 TGATTGAACAGAAAGATTTGAGGG 57.420 37.500 0.00 0.00 0.00 4.30
2234 2288 6.306199 TGATTGAACAGAAAGATTTGAGGGA 58.694 36.000 0.00 0.00 0.00 4.20
2235 2289 6.777091 TGATTGAACAGAAAGATTTGAGGGAA 59.223 34.615 0.00 0.00 0.00 3.97
2236 2290 7.287466 TGATTGAACAGAAAGATTTGAGGGAAA 59.713 33.333 0.00 0.00 0.00 3.13
2237 2291 7.416964 TTGAACAGAAAGATTTGAGGGAAAA 57.583 32.000 0.00 0.00 0.00 2.29
2238 2292 7.416964 TGAACAGAAAGATTTGAGGGAAAAA 57.583 32.000 0.00 0.00 0.00 1.94
2258 2312 3.775661 AACAAGGGTGAAGACAAAACG 57.224 42.857 0.00 0.00 0.00 3.60
2259 2313 2.993937 ACAAGGGTGAAGACAAAACGA 58.006 42.857 0.00 0.00 0.00 3.85
2260 2314 3.349022 ACAAGGGTGAAGACAAAACGAA 58.651 40.909 0.00 0.00 0.00 3.85
2261 2315 3.951680 ACAAGGGTGAAGACAAAACGAAT 59.048 39.130 0.00 0.00 0.00 3.34
2262 2316 5.127491 ACAAGGGTGAAGACAAAACGAATA 58.873 37.500 0.00 0.00 0.00 1.75
2263 2317 5.768164 ACAAGGGTGAAGACAAAACGAATAT 59.232 36.000 0.00 0.00 0.00 1.28
2264 2318 6.072673 ACAAGGGTGAAGACAAAACGAATATC 60.073 38.462 0.00 0.00 0.00 1.63
2265 2319 5.805728 AGGGTGAAGACAAAACGAATATCT 58.194 37.500 0.00 0.00 0.00 1.98
2266 2320 6.942976 AGGGTGAAGACAAAACGAATATCTA 58.057 36.000 0.00 0.00 0.00 1.98
2267 2321 7.565680 AGGGTGAAGACAAAACGAATATCTAT 58.434 34.615 0.00 0.00 0.00 1.98
2268 2322 7.495934 AGGGTGAAGACAAAACGAATATCTATG 59.504 37.037 0.00 0.00 0.00 2.23
2269 2323 7.280205 GGGTGAAGACAAAACGAATATCTATGT 59.720 37.037 0.00 0.00 0.00 2.29
2270 2324 8.116753 GGTGAAGACAAAACGAATATCTATGTG 58.883 37.037 0.00 0.00 0.00 3.21
2271 2325 8.656849 GTGAAGACAAAACGAATATCTATGTGT 58.343 33.333 0.00 0.00 0.00 3.72
2272 2326 8.655970 TGAAGACAAAACGAATATCTATGTGTG 58.344 33.333 0.00 0.00 0.00 3.82
2273 2327 8.547967 AAGACAAAACGAATATCTATGTGTGT 57.452 30.769 0.00 0.00 0.00 3.72
2274 2328 7.963981 AGACAAAACGAATATCTATGTGTGTG 58.036 34.615 0.00 0.00 0.00 3.82
2275 2329 7.602644 AGACAAAACGAATATCTATGTGTGTGT 59.397 33.333 0.00 0.00 0.00 3.72
2276 2330 8.766000 ACAAAACGAATATCTATGTGTGTGTA 57.234 30.769 0.00 0.00 0.00 2.90
2277 2331 9.210329 ACAAAACGAATATCTATGTGTGTGTAA 57.790 29.630 0.00 0.00 0.00 2.41
2280 2334 7.445900 ACGAATATCTATGTGTGTGTAAACG 57.554 36.000 0.00 0.00 0.00 3.60
2281 2335 6.020121 ACGAATATCTATGTGTGTGTAAACGC 60.020 38.462 0.00 0.00 0.00 4.84
2282 2336 6.198403 CGAATATCTATGTGTGTGTAAACGCT 59.802 38.462 0.00 0.00 0.00 5.07
2283 2337 7.464830 AATATCTATGTGTGTGTAAACGCTC 57.535 36.000 0.00 0.00 0.00 5.03
2284 2338 4.245845 TCTATGTGTGTGTAAACGCTCA 57.754 40.909 3.95 3.95 0.00 4.26
2285 2339 4.816392 TCTATGTGTGTGTAAACGCTCAT 58.184 39.130 16.18 16.18 37.81 2.90
2286 2340 3.811722 ATGTGTGTGTAAACGCTCATG 57.188 42.857 12.24 0.00 34.41 3.07
2287 2341 2.827652 TGTGTGTGTAAACGCTCATGA 58.172 42.857 0.00 0.00 33.34 3.07
2288 2342 3.398406 TGTGTGTGTAAACGCTCATGAT 58.602 40.909 0.00 0.00 33.34 2.45
2289 2343 3.812609 TGTGTGTGTAAACGCTCATGATT 59.187 39.130 0.00 0.00 33.34 2.57
2290 2344 4.151070 GTGTGTGTAAACGCTCATGATTG 58.849 43.478 0.00 0.00 33.34 2.67
2291 2345 4.061596 TGTGTGTAAACGCTCATGATTGA 58.938 39.130 0.00 0.00 0.00 2.57
2292 2346 4.513318 TGTGTGTAAACGCTCATGATTGAA 59.487 37.500 0.00 0.00 0.00 2.69
2293 2347 4.846137 GTGTGTAAACGCTCATGATTGAAC 59.154 41.667 0.00 0.00 0.00 3.18
2302 2356 4.201753 CGCTCATGATTGAACAGAACGATT 60.202 41.667 0.00 0.00 0.00 3.34
2303 2357 5.634896 GCTCATGATTGAACAGAACGATTT 58.365 37.500 0.00 0.00 0.00 2.17
2325 2379 2.946990 GAGGGAGAAAACAACGGTGAAA 59.053 45.455 7.88 0.00 0.00 2.69
2331 2385 5.405873 GGAGAAAACAACGGTGAAAACAAAA 59.594 36.000 7.88 0.00 0.00 2.44
2333 2387 5.753921 AGAAAACAACGGTGAAAACAAAACA 59.246 32.000 7.88 0.00 0.00 2.83
2334 2388 6.425417 AGAAAACAACGGTGAAAACAAAACAT 59.575 30.769 7.88 0.00 0.00 2.71
2336 2390 7.835634 AAACAACGGTGAAAACAAAACATAT 57.164 28.000 7.88 0.00 0.00 1.78
2339 2393 8.736751 ACAACGGTGAAAACAAAACATATATC 57.263 30.769 7.88 0.00 0.00 1.63
2340 2394 8.573035 ACAACGGTGAAAACAAAACATATATCT 58.427 29.630 7.88 0.00 0.00 1.98
2352 2406 9.448438 ACAAAACATATATCTATGTGTGTGTGT 57.552 29.630 14.84 6.01 45.73 3.72
2353 2407 9.706846 CAAAACATATATCTATGTGTGTGTGTG 57.293 33.333 4.64 0.00 45.73 3.82
2354 2408 9.448438 AAAACATATATCTATGTGTGTGTGTGT 57.552 29.630 4.64 0.00 45.73 3.72
2355 2409 8.424274 AACATATATCTATGTGTGTGTGTGTG 57.576 34.615 4.64 0.00 45.73 3.82
2356 2410 6.479990 ACATATATCTATGTGTGTGTGTGTGC 59.520 38.462 3.12 0.00 44.94 4.57
2357 2411 2.611225 TCTATGTGTGTGTGTGTGCA 57.389 45.000 0.00 0.00 0.00 4.57
2358 2412 2.209273 TCTATGTGTGTGTGTGTGCAC 58.791 47.619 10.75 10.75 45.44 4.57
2388 2442 2.517598 CACATACGGTGGCGCTATC 58.482 57.895 7.64 0.00 44.04 2.08
2430 2488 4.918201 CCGCTCCGGCCATTCCTC 62.918 72.222 2.24 0.00 41.17 3.71
2469 2527 2.364317 TGGAAGGCCTCCTCTCCG 60.364 66.667 5.23 0.00 45.64 4.63
2491 2549 4.398044 CGCCACTAATTTGTTGAGGGTAAT 59.602 41.667 0.00 0.00 0.00 1.89
2514 2572 5.773575 TGTTGTGTGCAAGAAAAAGTAACA 58.226 33.333 0.00 0.00 34.94 2.41
2536 2594 6.273825 ACACGTTTAATTTTGTTACCATGCA 58.726 32.000 0.00 0.00 0.00 3.96
2575 2633 6.239036 CCGACTATGAGGTCATTAATGAGTGA 60.239 42.308 18.47 4.03 37.51 3.41
2621 2679 5.180271 GGTAATGGACGTGGATTCTTTACA 58.820 41.667 0.00 0.00 0.00 2.41
2647 2780 6.324770 GTCATCCATGGTTTGATCCCTAATTT 59.675 38.462 18.72 0.00 0.00 1.82
2687 2820 7.438160 CGAATTACTACATGCTCACTAATTGGA 59.562 37.037 0.00 0.00 0.00 3.53
2690 2823 6.054860 ACTACATGCTCACTAATTGGAAGT 57.945 37.500 0.00 0.00 0.00 3.01
2733 2867 7.013655 GGATGGTAATTCTTTATCATGCAGTGT 59.986 37.037 5.84 0.00 43.21 3.55
2764 2898 5.829391 TCATCAATGGTGTGATCCCTAATTG 59.171 40.000 0.00 0.00 36.04 2.32
2822 2956 8.974060 TCAATGGTTTGATCCCTAATTACTAC 57.026 34.615 0.00 0.00 36.94 2.73
2823 2957 8.553153 TCAATGGTTTGATCCCTAATTACTACA 58.447 33.333 0.00 0.00 36.94 2.74
2824 2958 9.354673 CAATGGTTTGATCCCTAATTACTACAT 57.645 33.333 0.00 0.00 34.60 2.29
2825 2959 8.924511 ATGGTTTGATCCCTAATTACTACATG 57.075 34.615 0.00 0.00 0.00 3.21
2858 2999 3.354948 ACATGCTCACTAATTGGCAGA 57.645 42.857 0.00 0.00 35.62 4.26
2919 3060 5.048782 TGCAGTGAGTCATTAATGGTTTGAC 60.049 40.000 15.36 6.81 40.00 3.18
2925 3066 4.044065 AGTCATTAATGGTTTGACCCCTGA 59.956 41.667 15.36 0.00 40.46 3.86
2935 3076 3.934391 GACCCCTGACGAAGCGGTG 62.934 68.421 4.33 0.00 37.18 4.94
2957 3098 4.233005 GGACTCTGGTCGTAAGTTGTTAC 58.767 47.826 0.00 0.00 42.97 2.50
2973 3114 7.972832 AGTTGTTACGGTAGAAATTTCATGA 57.027 32.000 19.99 0.00 0.00 3.07
2997 3138 4.992511 CCGCGGGGTTTGGACGAA 62.993 66.667 20.10 0.00 0.00 3.85
2998 3139 3.719144 CGCGGGGTTTGGACGAAC 61.719 66.667 0.00 0.00 0.00 3.95
2999 3140 3.719144 GCGGGGTTTGGACGAACG 61.719 66.667 0.00 0.00 0.00 3.95
3000 3141 3.719144 CGGGGTTTGGACGAACGC 61.719 66.667 10.14 10.14 40.53 4.84
3001 3142 3.719144 GGGGTTTGGACGAACGCG 61.719 66.667 3.53 3.53 41.72 6.01
3002 3143 4.379143 GGGTTTGGACGAACGCGC 62.379 66.667 5.73 0.00 42.48 6.86
3003 3144 3.641986 GGTTTGGACGAACGCGCA 61.642 61.111 5.73 0.00 42.48 6.09
3004 3145 2.127758 GTTTGGACGAACGCGCAG 60.128 61.111 5.73 2.42 42.48 5.18
3005 3146 3.342627 TTTGGACGAACGCGCAGG 61.343 61.111 5.73 0.00 42.48 4.85
3130 3275 3.953775 CCAGTCGTTGGCCCAGGT 61.954 66.667 0.00 0.00 40.87 4.00
3133 3278 3.637273 GTCGTTGGCCCAGGTCCT 61.637 66.667 0.00 0.00 0.00 3.85
3195 3341 2.461897 GCGAAGTTCGGTGAAAACAA 57.538 45.000 25.55 0.00 40.84 2.83
3335 3488 2.756283 CCGTCGGCCTTCTCCTCT 60.756 66.667 0.00 0.00 0.00 3.69
3433 3586 2.792599 GTCGCTGTCGTCGAGGAT 59.207 61.111 11.48 0.00 36.56 3.24
3456 3609 1.304217 ACTCCTCCTTCTTCGCGGA 60.304 57.895 6.13 0.00 0.00 5.54
3499 3652 3.610669 CAGGGCGGCGATCTAGCT 61.611 66.667 12.98 0.00 37.29 3.32
3512 3665 0.105964 TCTAGCTCTCCCGCTCCATT 60.106 55.000 0.00 0.00 41.30 3.16
3585 4374 4.020617 CCCCGTTGCTCAGCCTCA 62.021 66.667 0.00 0.00 0.00 3.86
3595 4384 4.003788 CAGCCTCAACCCCGTCGT 62.004 66.667 0.00 0.00 0.00 4.34
3734 4529 1.464376 CGGCCATCGGGATAGTGAGT 61.464 60.000 2.24 0.00 35.59 3.41
3738 4533 2.037772 GCCATCGGGATAGTGAGTGATT 59.962 50.000 0.00 0.00 35.59 2.57
3743 4538 2.695666 CGGGATAGTGAGTGATTGGAGT 59.304 50.000 0.00 0.00 0.00 3.85
3871 4683 4.571243 GGCTTAAATAGGCGGGCA 57.429 55.556 3.78 0.00 39.90 5.36
4010 4825 3.838271 GAGGCGATGAGGGCGACA 61.838 66.667 0.00 0.00 39.80 4.35
4061 4878 0.385473 CGTCTGTTTCGCGCCAAAAT 60.385 50.000 0.56 0.00 0.00 1.82
4204 5023 3.244105 GCTGACGCGAGAAAAGCA 58.756 55.556 15.93 0.00 35.51 3.91
4248 5067 0.599728 CGGCTGGAGATGCTCTTAGC 60.600 60.000 12.47 12.47 42.82 3.09
4249 5068 0.599728 GGCTGGAGATGCTCTTAGCG 60.600 60.000 13.66 0.00 46.26 4.26
4250 5069 1.220817 GCTGGAGATGCTCTTAGCGC 61.221 60.000 0.00 0.00 46.26 5.92
4251 5070 0.599728 CTGGAGATGCTCTTAGCGCC 60.600 60.000 2.29 0.00 46.26 6.53
4252 5071 1.045350 TGGAGATGCTCTTAGCGCCT 61.045 55.000 2.29 0.00 46.26 5.52
4253 5072 0.962489 GGAGATGCTCTTAGCGCCTA 59.038 55.000 2.29 0.00 46.26 3.93
4254 5073 1.548269 GGAGATGCTCTTAGCGCCTAT 59.452 52.381 2.29 0.00 46.26 2.57
4255 5074 2.755655 GGAGATGCTCTTAGCGCCTATA 59.244 50.000 2.29 0.00 46.26 1.31
4256 5075 3.428316 GGAGATGCTCTTAGCGCCTATAC 60.428 52.174 2.29 0.00 46.26 1.47
4257 5076 3.426615 AGATGCTCTTAGCGCCTATACT 58.573 45.455 2.29 0.00 46.26 2.12
4258 5077 3.192422 AGATGCTCTTAGCGCCTATACTG 59.808 47.826 2.29 0.00 46.26 2.74
4259 5078 2.583143 TGCTCTTAGCGCCTATACTGA 58.417 47.619 2.29 0.00 46.26 3.41
4260 5079 2.293677 TGCTCTTAGCGCCTATACTGAC 59.706 50.000 2.29 0.00 46.26 3.51
4261 5080 2.554893 GCTCTTAGCGCCTATACTGACT 59.445 50.000 2.29 0.00 0.00 3.41
4262 5081 3.610585 GCTCTTAGCGCCTATACTGACTG 60.611 52.174 2.29 0.00 0.00 3.51
4263 5082 2.885266 TCTTAGCGCCTATACTGACTGG 59.115 50.000 2.29 0.00 0.00 4.00
4264 5083 2.359981 TAGCGCCTATACTGACTGGT 57.640 50.000 2.29 0.00 0.00 4.00
4265 5084 1.486211 AGCGCCTATACTGACTGGTT 58.514 50.000 2.29 0.00 0.00 3.67
4266 5085 1.409427 AGCGCCTATACTGACTGGTTC 59.591 52.381 2.29 0.00 0.00 3.62
4267 5086 1.864435 GCGCCTATACTGACTGGTTCG 60.864 57.143 0.00 0.00 0.00 3.95
4268 5087 1.674441 CGCCTATACTGACTGGTTCGA 59.326 52.381 0.00 0.00 0.00 3.71
4269 5088 2.293677 CGCCTATACTGACTGGTTCGAT 59.706 50.000 0.00 0.00 0.00 3.59
4270 5089 3.609644 CGCCTATACTGACTGGTTCGATC 60.610 52.174 0.00 0.00 0.00 3.69
4271 5090 3.609644 GCCTATACTGACTGGTTCGATCG 60.610 52.174 9.36 9.36 0.00 3.69
4272 5091 3.813724 CCTATACTGACTGGTTCGATCGA 59.186 47.826 15.15 15.15 0.00 3.59
4273 5092 3.972950 ATACTGACTGGTTCGATCGAG 57.027 47.619 18.54 9.21 0.00 4.04
4274 5093 0.171455 ACTGACTGGTTCGATCGAGC 59.829 55.000 22.10 22.10 0.00 5.03
4275 5094 0.863538 CTGACTGGTTCGATCGAGCG 60.864 60.000 23.04 18.51 0.00 5.03
4276 5095 1.586564 GACTGGTTCGATCGAGCGG 60.587 63.158 24.18 20.15 0.00 5.52
4277 5096 2.956964 CTGGTTCGATCGAGCGGC 60.957 66.667 24.18 15.84 0.00 6.53
4278 5097 4.508128 TGGTTCGATCGAGCGGCC 62.508 66.667 24.18 23.78 0.00 6.13
4304 5123 4.797215 GCATACGCTAAGATAAATACGCG 58.203 43.478 3.53 3.53 45.32 6.01
4327 5146 1.227089 CGGCTGCGCTATTCTGAGT 60.227 57.895 9.73 0.00 0.00 3.41
4331 5150 2.001812 CTGCGCTATTCTGAGTGTGT 57.998 50.000 9.73 0.00 0.00 3.72
4344 5163 2.031245 TGAGTGTGTGCGCATTTTTAGG 60.031 45.455 15.91 0.00 0.00 2.69
4359 5178 1.308047 TTAGGTAATCTACGCGCCGA 58.692 50.000 5.73 2.46 0.00 5.54
4377 5196 0.461961 GACCGCTGCTCCTAATCACT 59.538 55.000 0.00 0.00 0.00 3.41
4383 5202 1.300233 GCTCCTAATCACTCGCGGG 60.300 63.158 3.27 3.27 0.00 6.13
4388 5207 0.108804 CTAATCACTCGCGGGTGTGT 60.109 55.000 36.02 26.48 38.48 3.72
4390 5209 2.094757 AATCACTCGCGGGTGTGTGA 62.095 55.000 36.02 24.74 42.50 3.58
4393 5212 2.734723 CTCGCGGGTGTGTGAGTG 60.735 66.667 6.13 0.00 40.71 3.51
4449 5268 4.147479 GTGCAAAATAAAGTAACGCGCTTT 59.853 37.500 5.73 10.82 39.26 3.51
4450 5269 5.340138 GTGCAAAATAAAGTAACGCGCTTTA 59.660 36.000 16.27 16.27 41.04 1.85
4451 5270 6.033091 GTGCAAAATAAAGTAACGCGCTTTAT 59.967 34.615 18.57 18.57 45.58 1.40
4481 5300 7.360113 TCTATTACCATGTGTTGCTCTGATA 57.640 36.000 0.00 0.00 0.00 2.15
4531 5350 2.504175 AGTAAGCACGGATGGTAATGGT 59.496 45.455 0.00 0.00 34.76 3.55
4547 5366 6.272792 TGGTAATGGTCCTAGTTTTCTTACCA 59.727 38.462 14.58 14.58 42.59 3.25
4562 5381 7.504924 TTTCTTACCAGATGTAAAACAGTGG 57.495 36.000 8.85 8.85 40.30 4.00
4606 5425 6.875972 AGTAAGTCTGAATGTAATGGACCT 57.124 37.500 0.00 0.00 0.00 3.85
4607 5426 7.259088 AGTAAGTCTGAATGTAATGGACCTT 57.741 36.000 0.00 0.00 0.00 3.50
4608 5427 7.106239 AGTAAGTCTGAATGTAATGGACCTTG 58.894 38.462 0.00 0.00 0.00 3.61
4609 5428 4.848357 AGTCTGAATGTAATGGACCTTGG 58.152 43.478 0.00 0.00 0.00 3.61
4610 5429 4.289672 AGTCTGAATGTAATGGACCTTGGT 59.710 41.667 0.00 0.00 0.00 3.67
4611 5430 5.010282 GTCTGAATGTAATGGACCTTGGTT 58.990 41.667 0.00 0.00 0.00 3.67
4612 5431 5.476945 GTCTGAATGTAATGGACCTTGGTTT 59.523 40.000 0.00 0.00 0.00 3.27
4613 5432 6.015434 GTCTGAATGTAATGGACCTTGGTTTT 60.015 38.462 0.00 0.00 0.00 2.43
4614 5433 6.553100 TCTGAATGTAATGGACCTTGGTTTTT 59.447 34.615 0.00 0.00 0.00 1.94
4664 5528 6.655930 GGTAATGGACCTATGTCTTTTACCA 58.344 40.000 22.57 0.00 45.67 3.25
4674 5538 1.996191 GTCTTTTACCAGCAGCGAGAG 59.004 52.381 0.00 0.00 0.00 3.20
4675 5539 1.893137 TCTTTTACCAGCAGCGAGAGA 59.107 47.619 0.00 0.00 0.00 3.10
4700 5564 5.360714 TGAAGGTTTCATCCCTATTCATTGC 59.639 40.000 0.00 0.00 34.08 3.56
4788 5653 5.825679 TGTTACACATAGAGCAGTTTTGGTT 59.174 36.000 0.00 0.00 34.61 3.67
4803 5668 7.651704 GCAGTTTTGGTTGTAAGTGTTATGATT 59.348 33.333 0.00 0.00 0.00 2.57
4823 5691 2.248274 GATTTTTCCCACGTCGCCCG 62.248 60.000 0.00 0.00 44.03 6.13
4851 5719 4.430765 CCTGGTTAGCGCGTCGGT 62.431 66.667 8.43 8.78 41.50 4.69
4859 5727 3.108144 GTTAGCGCGTCGGTCTAATTAA 58.892 45.455 8.43 0.00 38.83 1.40
4860 5728 1.836383 AGCGCGTCGGTCTAATTAAG 58.164 50.000 8.43 0.00 29.31 1.85
4861 5729 0.228994 GCGCGTCGGTCTAATTAAGC 59.771 55.000 8.43 0.00 0.00 3.09
4862 5730 0.497265 CGCGTCGGTCTAATTAAGCG 59.503 55.000 0.00 10.82 40.37 4.68
4863 5731 0.850856 GCGTCGGTCTAATTAAGCGG 59.149 55.000 14.64 4.29 38.13 5.52
4864 5732 0.850856 CGTCGGTCTAATTAAGCGGC 59.149 55.000 14.64 13.01 38.74 6.53
4865 5733 1.215244 GTCGGTCTAATTAAGCGGCC 58.785 55.000 14.64 0.00 36.32 6.13
4866 5734 0.249155 TCGGTCTAATTAAGCGGCCG 60.249 55.000 24.05 24.05 38.13 6.13
4867 5735 1.219522 CGGTCTAATTAAGCGGCCGG 61.220 60.000 29.38 8.95 33.81 6.13
4868 5736 0.105408 GGTCTAATTAAGCGGCCGGA 59.895 55.000 29.38 10.09 0.00 5.14
4869 5737 1.499049 GTCTAATTAAGCGGCCGGAG 58.501 55.000 29.38 0.00 0.00 4.63
4870 5738 0.249741 TCTAATTAAGCGGCCGGAGC 60.250 55.000 29.38 10.64 38.76 4.70
4871 5739 1.557443 CTAATTAAGCGGCCGGAGCG 61.557 60.000 29.38 0.00 41.24 5.03
4872 5740 2.300850 TAATTAAGCGGCCGGAGCGT 62.301 55.000 29.38 11.22 41.24 5.07
4873 5741 2.300850 AATTAAGCGGCCGGAGCGTA 62.301 55.000 29.38 10.09 41.24 4.42
4874 5742 2.694829 ATTAAGCGGCCGGAGCGTAG 62.695 60.000 29.38 0.00 41.24 3.51
4878 5746 3.912907 CGGCCGGAGCGTAGGATT 61.913 66.667 20.10 0.00 41.24 3.01
4879 5747 2.280186 GGCCGGAGCGTAGGATTG 60.280 66.667 5.05 0.00 41.24 2.67
4880 5748 2.280186 GCCGGAGCGTAGGATTGG 60.280 66.667 5.05 0.00 0.00 3.16
4881 5749 2.421739 CCGGAGCGTAGGATTGGG 59.578 66.667 0.00 0.00 0.00 4.12
4882 5750 2.280186 CGGAGCGTAGGATTGGGC 60.280 66.667 0.00 0.00 0.00 5.36
4883 5751 2.908015 GGAGCGTAGGATTGGGCA 59.092 61.111 0.00 0.00 0.00 5.36
4884 5752 1.227674 GGAGCGTAGGATTGGGCAG 60.228 63.158 0.00 0.00 0.00 4.85
4885 5753 1.686325 GGAGCGTAGGATTGGGCAGA 61.686 60.000 0.00 0.00 0.00 4.26
4886 5754 0.178068 GAGCGTAGGATTGGGCAGAA 59.822 55.000 0.00 0.00 0.00 3.02
4887 5755 0.839946 AGCGTAGGATTGGGCAGAAT 59.160 50.000 0.00 0.00 0.00 2.40
4888 5756 2.037251 GAGCGTAGGATTGGGCAGAATA 59.963 50.000 0.00 0.00 0.00 1.75
4889 5757 2.143925 GCGTAGGATTGGGCAGAATAC 58.856 52.381 0.00 0.00 0.00 1.89
4890 5758 2.404215 CGTAGGATTGGGCAGAATACG 58.596 52.381 0.00 0.00 0.00 3.06
4891 5759 2.143925 GTAGGATTGGGCAGAATACGC 58.856 52.381 0.00 0.00 0.00 4.42
4892 5760 0.532862 AGGATTGGGCAGAATACGCG 60.533 55.000 3.53 3.53 0.00 6.01
4893 5761 1.279840 GATTGGGCAGAATACGCGC 59.720 57.895 5.73 0.00 42.27 6.86
4895 5763 2.189257 TGGGCAGAATACGCGCAT 59.811 55.556 5.73 0.00 46.03 4.73
4896 5764 2.179547 TGGGCAGAATACGCGCATG 61.180 57.895 5.73 0.00 46.03 4.06
4897 5765 2.051882 GGCAGAATACGCGCATGC 60.052 61.111 5.73 7.91 36.16 4.06
4898 5766 2.708865 GCAGAATACGCGCATGCA 59.291 55.556 19.57 0.00 42.97 3.96
4899 5767 1.280746 GCAGAATACGCGCATGCAT 59.719 52.632 19.57 4.84 42.97 3.96
4900 5768 0.317269 GCAGAATACGCGCATGCATT 60.317 50.000 19.57 9.66 42.97 3.56
4901 5769 1.069973 GCAGAATACGCGCATGCATTA 60.070 47.619 19.57 5.42 42.97 1.90
4902 5770 2.413239 GCAGAATACGCGCATGCATTAT 60.413 45.455 19.57 7.64 42.97 1.28
4907 5775 4.740741 ATACGCGCATGCATTATAAACA 57.259 36.364 19.57 0.00 42.97 2.83
4961 5829 1.000396 ATGCCCTTTGGTCTCTGGC 60.000 57.895 0.00 0.00 42.49 4.85
4969 5837 2.727123 TTGGTCTCTGGCTTGTCAAA 57.273 45.000 0.00 0.00 0.00 2.69
4971 5839 2.507484 TGGTCTCTGGCTTGTCAAATG 58.493 47.619 0.00 0.00 0.00 2.32
5001 5869 2.689175 GGTTGGATGCATGGGGGA 59.311 61.111 2.46 0.00 0.00 4.81
5009 5877 2.358195 GGATGCATGGGGGAAAACTAGT 60.358 50.000 2.46 0.00 0.00 2.57
5010 5878 3.117663 GGATGCATGGGGGAAAACTAGTA 60.118 47.826 2.46 0.00 0.00 1.82
5012 5880 4.601406 TGCATGGGGGAAAACTAGTAAT 57.399 40.909 0.00 0.00 0.00 1.89
5279 6152 3.916392 CTGGGGTCACGACGACTGC 62.916 68.421 0.00 0.00 44.70 4.40
5413 6286 4.034510 CGAGATGGAAGCCATACAAAACTC 59.965 45.833 0.00 0.55 45.26 3.01
5443 6316 1.764134 GTATATCACCGGGGTGGAACA 59.236 52.381 17.31 0.00 45.43 3.18
5455 6328 3.831911 GGGGTGGAACAAGATGAAATTGA 59.168 43.478 0.00 0.00 44.16 2.57
5582 6455 9.243105 GGTGAACTATACCATATTAATTGGCAT 57.757 33.333 13.42 10.22 37.81 4.40
5613 6486 1.369091 GCACACATACCTGAAGGCCG 61.369 60.000 0.00 0.00 39.32 6.13
5624 6497 0.038892 TGAAGGCCGACACGTTCTAC 60.039 55.000 0.00 0.00 35.86 2.59
5642 6515 4.173256 TCTACGTATGTGTGCATGAACTG 58.827 43.478 5.18 0.00 36.58 3.16
5644 6517 3.920446 ACGTATGTGTGCATGAACTGTA 58.080 40.909 5.18 0.00 36.58 2.74
5661 6534 5.036117 ACTGTATGTGTGTTGTCCTTTCT 57.964 39.130 0.00 0.00 0.00 2.52
5753 6626 8.499162 GTGAGATCGATGATTGGGTTTTATTAG 58.501 37.037 0.54 0.00 0.00 1.73
5762 6635 5.975693 TTGGGTTTTATTAGACCAAGCAG 57.024 39.130 0.00 0.00 36.37 4.24
5772 6645 3.618690 AGACCAAGCAGGACTACAATC 57.381 47.619 1.83 0.00 40.73 2.67
5891 6764 6.324770 TGGAGTACTTCTGCAGAATCATATGA 59.675 38.462 28.57 8.10 39.51 2.15
5912 6785 5.477510 TGATTATTGGACAAACATGGCAAC 58.522 37.500 0.00 0.00 0.00 4.17
5934 6807 3.683340 CCCGCCACTAAAGAAAAGTAGTC 59.317 47.826 0.00 0.00 0.00 2.59
5943 6816 1.002087 AGAAAAGTAGTCTGTGGCCGG 59.998 52.381 0.00 0.00 0.00 6.13
5957 6830 3.148084 CCGGACACCACTGAAGGT 58.852 61.111 0.00 0.00 44.48 3.50
5973 6846 4.329545 GTCTGCCTGGCAACCCGA 62.330 66.667 23.51 13.44 38.41 5.14
5974 6847 4.329545 TCTGCCTGGCAACCCGAC 62.330 66.667 23.51 0.00 38.41 4.79
5976 6849 4.196778 TGCCTGGCAACCCGACAA 62.197 61.111 21.08 0.00 34.76 3.18
5983 6856 1.901464 GCAACCCGACAATGGTGGT 60.901 57.895 0.00 0.00 35.88 4.16
6003 6876 4.977963 TGGTTTCGTTGAGTAGAACTAACG 59.022 41.667 0.00 0.00 45.06 3.18
6096 7035 6.096846 AGTTGGTGAAAGTGTTTTCTTATGCT 59.903 34.615 2.21 0.00 42.56 3.79
6114 7053 1.324383 CTAAAAACTGCACCGGGGTT 58.676 50.000 5.12 1.80 0.00 4.11
6125 7064 2.838736 CACCGGGGTTGATAGATTCAG 58.161 52.381 6.32 0.00 35.27 3.02
6190 7133 5.779529 AGTCATGTGAAAAACTGCATCTT 57.220 34.783 0.00 0.00 0.00 2.40
6220 7163 3.875134 TCATGCTCATGCTAGATTGTGTG 59.125 43.478 5.04 0.00 38.65 3.82
6221 7164 3.339253 TGCTCATGCTAGATTGTGTGT 57.661 42.857 0.00 0.00 40.48 3.72
6245 7188 9.428097 TGTAATGAGCTGATGTTATATAAGCAG 57.572 33.333 0.00 12.34 36.32 4.24
6267 7210 8.954350 AGCAGTACGTCCGTAATTCTATATAAT 58.046 33.333 0.46 0.00 31.86 1.28
6302 7245 5.711036 CCGACTCTATAGCTAATAACCCACT 59.289 44.000 0.00 0.00 0.00 4.00
6347 7290 7.988737 TGCATCATCCAAGTTCTAATTGTAAG 58.011 34.615 0.00 0.00 0.00 2.34
6371 7314 8.366359 AGACAAATAATTGCCTTAACCAAGAT 57.634 30.769 0.00 0.00 40.34 2.40
6405 7348 6.151663 TGTATTGCATGATTTCATTGGAGG 57.848 37.500 0.00 0.00 33.61 4.30
6423 7366 5.087323 TGGAGGCCCAACACAAATATTTAA 58.913 37.500 0.00 0.00 40.09 1.52
6474 7417 2.565210 GCCATTTGCAATCATCACGA 57.435 45.000 0.00 0.00 40.77 4.35
6518 7461 0.250901 AACTCATGCACGCCTTTCCT 60.251 50.000 0.00 0.00 0.00 3.36
6524 7467 0.108992 TGCACGCCTTTCCTACTACG 60.109 55.000 0.00 0.00 0.00 3.51
6532 7475 3.181482 GCCTTTCCTACTACGAACTACCC 60.181 52.174 0.00 0.00 0.00 3.69
6534 7477 4.142293 CCTTTCCTACTACGAACTACCCAC 60.142 50.000 0.00 0.00 0.00 4.61
6542 7485 3.672767 ACGAACTACCCACCTAAACTG 57.327 47.619 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.900016 CATCCCCGTGCCATCATGG 60.900 63.158 0.00 0.00 46.66 3.66
41 42 4.776322 TGCGCTTCCATCCCCGTG 62.776 66.667 9.73 0.00 0.00 4.94
44 45 4.496336 AGCTGCGCTTCCATCCCC 62.496 66.667 9.73 0.00 33.89 4.81
49 50 2.357881 CAGTCAGCTGCGCTTCCA 60.358 61.111 9.47 0.00 36.40 3.53
52 53 1.002868 ATTCCAGTCAGCTGCGCTT 60.003 52.632 9.47 0.00 41.26 4.68
57 58 2.074576 CACTCACATTCCAGTCAGCTG 58.925 52.381 7.63 7.63 42.22 4.24
61 62 1.002430 GCTCCACTCACATTCCAGTCA 59.998 52.381 0.00 0.00 0.00 3.41
67 68 0.037326 TGACCGCTCCACTCACATTC 60.037 55.000 0.00 0.00 0.00 2.67
68 69 0.396435 TTGACCGCTCCACTCACATT 59.604 50.000 0.00 0.00 0.00 2.71
100 101 4.437390 CGCTATCATCACCTCAAACCAAAC 60.437 45.833 0.00 0.00 0.00 2.93
110 111 4.772624 ACATATACCACGCTATCATCACCT 59.227 41.667 0.00 0.00 0.00 4.00
122 123 2.036387 TCTGACCCCACATATACCACG 58.964 52.381 0.00 0.00 0.00 4.94
128 131 2.330216 GCCTAGTCTGACCCCACATAT 58.670 52.381 3.76 0.00 0.00 1.78
145 148 3.025599 ACCATCCCATGCTGGCCT 61.026 61.111 3.32 0.00 35.79 5.19
149 152 1.524621 GTCGGACCATCCCATGCTG 60.525 63.158 0.00 0.00 31.13 4.41
151 154 1.149174 ATGTCGGACCATCCCATGC 59.851 57.895 5.55 0.00 31.13 4.06
153 156 1.839191 CCATGTCGGACCATCCCAT 59.161 57.895 5.55 0.00 36.56 4.00
154 157 3.042733 GCCATGTCGGACCATCCCA 62.043 63.158 5.55 0.00 36.56 4.37
182 185 4.185286 GGGGTGGTACGGATGCCC 62.185 72.222 0.00 0.00 38.61 5.36
184 187 0.690762 ATATGGGGTGGTACGGATGC 59.309 55.000 0.00 0.00 0.00 3.91
185 188 2.028112 CAGATATGGGGTGGTACGGATG 60.028 54.545 0.00 0.00 0.00 3.51
186 189 2.257207 CAGATATGGGGTGGTACGGAT 58.743 52.381 0.00 0.00 0.00 4.18
190 194 1.348036 GGAGCAGATATGGGGTGGTAC 59.652 57.143 0.00 0.00 0.00 3.34
210 214 1.113788 CCAAACCCAGCCCATATGTG 58.886 55.000 1.24 0.00 0.00 3.21
212 216 0.760189 CCCCAAACCCAGCCCATATG 60.760 60.000 0.00 0.00 0.00 1.78
218 222 2.600470 GACACCCCAAACCCAGCC 60.600 66.667 0.00 0.00 0.00 4.85
219 223 1.045911 TTTGACACCCCAAACCCAGC 61.046 55.000 0.00 0.00 31.73 4.85
228 232 1.886542 GTCCAGATTGTTTGACACCCC 59.113 52.381 0.00 0.00 0.00 4.95
229 233 1.535462 CGTCCAGATTGTTTGACACCC 59.465 52.381 0.00 0.00 0.00 4.61
230 234 2.218603 ACGTCCAGATTGTTTGACACC 58.781 47.619 0.00 0.00 0.00 4.16
237 241 0.958822 GCCCAAACGTCCAGATTGTT 59.041 50.000 0.00 0.00 31.56 2.83
262 266 3.480133 CCCTGTCGGATCCCCCAC 61.480 72.222 6.06 0.95 34.14 4.61
274 278 0.114168 TAGCAAAATGGCCACCCTGT 59.886 50.000 8.16 0.00 0.00 4.00
294 298 2.927856 AGCCCGGTCACCATCACA 60.928 61.111 0.00 0.00 0.00 3.58
295 299 1.895020 TACAGCCCGGTCACCATCAC 61.895 60.000 0.00 0.00 0.00 3.06
310 314 0.806868 TAAGACGTCCAGGCGTACAG 59.193 55.000 13.01 0.00 45.79 2.74
319 323 1.640917 AAGCTTCCCTAAGACGTCCA 58.359 50.000 13.01 0.00 34.37 4.02
320 324 2.028385 TCAAAGCTTCCCTAAGACGTCC 60.028 50.000 13.01 0.00 34.37 4.79
334 338 0.402121 GAGTTGGACCCCTCAAAGCT 59.598 55.000 3.91 0.00 0.00 3.74
336 340 3.173965 TCTAGAGTTGGACCCCTCAAAG 58.826 50.000 10.09 7.36 0.00 2.77
340 344 1.414550 GCATCTAGAGTTGGACCCCTC 59.585 57.143 0.00 0.93 0.00 4.30
351 355 3.255642 GCAGAGAGTTAGGGCATCTAGAG 59.744 52.174 0.00 0.00 0.00 2.43
353 357 3.230134 AGCAGAGAGTTAGGGCATCTAG 58.770 50.000 0.00 0.00 0.00 2.43
368 372 5.152097 CACAACATAAGCAAAGAAGCAGAG 58.848 41.667 0.00 0.00 36.85 3.35
370 374 4.863491 ACACAACATAAGCAAAGAAGCAG 58.137 39.130 0.00 0.00 36.85 4.24
380 384 7.040961 TGACCTTTTTAGGTACACAACATAAGC 60.041 37.037 0.00 0.00 43.24 3.09
382 386 8.927675 ATGACCTTTTTAGGTACACAACATAA 57.072 30.769 0.00 0.00 43.24 1.90
428 432 5.595257 TGGTATGGCGTACTTACATGTTA 57.405 39.130 15.98 0.00 32.80 2.41
430 434 4.682778 ATGGTATGGCGTACTTACATGT 57.317 40.909 15.98 2.69 32.80 3.21
441 445 7.773224 TCCCATTCTTAATTATATGGTATGGCG 59.227 37.037 15.26 0.00 36.61 5.69
471 478 0.392998 GTTGCATGTCGAGGTGGGAT 60.393 55.000 0.00 0.00 0.00 3.85
472 479 1.003839 GTTGCATGTCGAGGTGGGA 60.004 57.895 0.00 0.00 0.00 4.37
490 497 4.040829 TGGTAGGTCTATTCTCATGCATGG 59.959 45.833 25.97 16.47 0.00 3.66
499 506 6.620877 TCAATGTTGTGGTAGGTCTATTCT 57.379 37.500 0.00 0.00 0.00 2.40
503 510 7.282224 GCATAATTCAATGTTGTGGTAGGTCTA 59.718 37.037 0.00 0.00 0.00 2.59
509 516 6.379417 TCCATGCATAATTCAATGTTGTGGTA 59.621 34.615 0.00 0.00 31.99 3.25
521 528 7.250445 GGAACCATTTTTCCATGCATAATTC 57.750 36.000 0.00 0.00 44.14 2.17
635 642 9.844257 ATAAAAATTTGGGTCAAAAACATGAGA 57.156 25.926 0.00 0.00 36.90 3.27
637 644 9.618890 TGATAAAAATTTGGGTCAAAAACATGA 57.381 25.926 0.00 0.00 36.90 3.07
643 650 8.807948 TTGGTTGATAAAAATTTGGGTCAAAA 57.192 26.923 11.60 4.48 36.90 2.44
646 653 8.986929 AAATTGGTTGATAAAAATTTGGGTCA 57.013 26.923 0.00 0.00 32.48 4.02
647 654 8.227119 CGAAATTGGTTGATAAAAATTTGGGTC 58.773 33.333 0.00 0.00 33.54 4.46
650 657 7.020602 GCCGAAATTGGTTGATAAAAATTTGG 58.979 34.615 0.00 0.00 33.54 3.28
653 660 7.227512 TGTTGCCGAAATTGGTTGATAAAAATT 59.772 29.630 0.00 0.00 0.00 1.82
654 661 6.708054 TGTTGCCGAAATTGGTTGATAAAAAT 59.292 30.769 0.00 0.00 0.00 1.82
658 665 4.855715 TGTTGCCGAAATTGGTTGATAA 57.144 36.364 0.00 0.00 0.00 1.75
677 684 1.001633 AGAGAATAACCCACGCGTTGT 59.998 47.619 10.22 7.29 0.00 3.32
680 687 2.097825 ACTAGAGAATAACCCACGCGT 58.902 47.619 5.58 5.58 0.00 6.01
682 689 5.176592 AGAAAACTAGAGAATAACCCACGC 58.823 41.667 0.00 0.00 0.00 5.34
683 690 8.818057 CAATAGAAAACTAGAGAATAACCCACG 58.182 37.037 0.00 0.00 0.00 4.94
684 691 9.110502 CCAATAGAAAACTAGAGAATAACCCAC 57.889 37.037 0.00 0.00 0.00 4.61
685 692 8.832735 ACCAATAGAAAACTAGAGAATAACCCA 58.167 33.333 0.00 0.00 0.00 4.51
706 713 4.585879 AGGTAAATGTACTTGCGACCAAT 58.414 39.130 0.00 0.00 0.00 3.16
749 782 9.847224 CTACCAAGGTATGACCATAACTTTAAT 57.153 33.333 15.49 8.33 46.12 1.40
760 793 8.803397 AAAAATCTAACTACCAAGGTATGACC 57.197 34.615 0.00 0.00 38.99 4.02
810 843 4.869297 CAGATCAGCTCTTGGTTTCTACAG 59.131 45.833 0.00 0.00 29.16 2.74
968 1001 4.540824 GCCTTAAGCTGACAACTCTTTTG 58.459 43.478 0.00 0.00 38.99 2.44
971 1004 2.373502 AGGCCTTAAGCTGACAACTCTT 59.626 45.455 0.00 0.00 43.05 2.85
973 1006 2.481289 AGGCCTTAAGCTGACAACTC 57.519 50.000 0.00 0.00 43.05 3.01
975 1008 2.633488 CCTAGGCCTTAAGCTGACAAC 58.367 52.381 12.58 0.00 43.05 3.32
976 1009 1.065418 GCCTAGGCCTTAAGCTGACAA 60.065 52.381 24.19 0.00 43.05 3.18
978 1011 0.541863 TGCCTAGGCCTTAAGCTGAC 59.458 55.000 30.81 0.00 43.05 3.51
979 1012 1.065418 GTTGCCTAGGCCTTAAGCTGA 60.065 52.381 30.81 5.87 43.05 4.26
980 1013 1.340017 TGTTGCCTAGGCCTTAAGCTG 60.340 52.381 30.81 0.00 43.05 4.24
989 1024 1.026718 AAGCGTCATGTTGCCTAGGC 61.027 55.000 27.71 27.71 42.35 3.93
1020 1055 3.997064 CTCCTGCGGGCTCACTTCG 62.997 68.421 6.73 0.00 0.00 3.79
1056 1091 0.109597 GCATGTGGTTTTGGAGCTCG 60.110 55.000 7.83 0.00 0.00 5.03
1113 1148 0.542938 CCTCGGGGATGCCTAGATCA 60.543 60.000 0.00 0.00 33.58 2.92
1168 1203 0.602638 TTTGCGTCTGCCTCGATGTT 60.603 50.000 0.00 0.00 41.78 2.71
1175 1210 0.324943 ATGTACCTTTGCGTCTGCCT 59.675 50.000 0.00 0.00 41.78 4.75
1215 1250 2.434884 AGTTCCATCACGCGCTGG 60.435 61.111 5.73 11.61 0.00 4.85
1317 1352 1.896660 GCACCAGCCGACAAGGAAA 60.897 57.895 0.00 0.00 45.00 3.13
1380 1415 1.666054 GCATGCTGAAGAAGGAGGAG 58.334 55.000 11.37 0.00 27.83 3.69
1381 1416 0.254178 GGCATGCTGAAGAAGGAGGA 59.746 55.000 18.92 0.00 27.83 3.71
1382 1417 0.255318 AGGCATGCTGAAGAAGGAGG 59.745 55.000 18.92 0.00 0.00 4.30
1388 1423 1.005097 ACCATTCAGGCATGCTGAAGA 59.995 47.619 25.81 14.72 43.00 2.87
1485 1520 2.032681 AACCTGGCGTCCTTGCTC 59.967 61.111 0.00 0.00 34.52 4.26
1498 1533 0.748450 TTGAGGACGTCGTTGAACCT 59.252 50.000 12.67 0.38 0.00 3.50
1519 1554 2.383245 CTATCGGCGGCCATGGAGTT 62.383 60.000 18.40 0.00 0.00 3.01
1608 1643 1.304052 GCCATTGCCACCACCTACA 60.304 57.895 0.00 0.00 0.00 2.74
1635 1670 3.507622 GGAAAGCCTTAGCAATCACTTGT 59.492 43.478 0.00 0.00 43.56 3.16
1647 1682 1.817941 GATGCGCGGGAAAGCCTTA 60.818 57.895 8.83 0.00 0.00 2.69
1674 1709 0.898320 CGTGAGGAAGGTCCATGACT 59.102 55.000 0.00 0.00 39.61 3.41
1798 1833 3.517500 TGCGCTTGATATGGATGGGTATA 59.482 43.478 9.73 0.00 0.00 1.47
1799 1834 2.305635 TGCGCTTGATATGGATGGGTAT 59.694 45.455 9.73 0.00 0.00 2.73
1833 1872 5.628134 CAATGAATCACATGTGAGACACTG 58.372 41.667 30.63 25.72 43.61 3.66
1852 1891 5.185454 TGAGTGAGTAATAAGGGTGCAATG 58.815 41.667 0.00 0.00 0.00 2.82
1860 1899 6.090898 CGACCAGTTTTGAGTGAGTAATAAGG 59.909 42.308 0.00 0.00 0.00 2.69
1887 1933 5.996219 TCGAAATAAATGTGACACCTGTTG 58.004 37.500 2.45 0.00 0.00 3.33
1890 1936 6.524239 CACAATCGAAATAAATGTGACACCTG 59.476 38.462 2.45 0.00 43.01 4.00
1898 1944 8.514594 ACACTTGATCACAATCGAAATAAATGT 58.485 29.630 0.00 0.00 35.37 2.71
1899 1945 8.791605 CACACTTGATCACAATCGAAATAAATG 58.208 33.333 0.00 0.00 35.37 2.32
1971 2024 6.877855 CCTGGATATCTAAGTACTACTGCGTA 59.122 42.308 2.05 0.00 0.00 4.42
1974 2027 5.105675 GCCCTGGATATCTAAGTACTACTGC 60.106 48.000 2.05 0.00 0.00 4.40
1975 2028 5.419471 GGCCCTGGATATCTAAGTACTACTG 59.581 48.000 2.05 0.00 0.00 2.74
1978 2031 5.880279 AGGCCCTGGATATCTAAGTACTA 57.120 43.478 0.00 0.00 0.00 1.82
1979 2032 4.768807 AGGCCCTGGATATCTAAGTACT 57.231 45.455 0.00 0.00 0.00 2.73
1980 2033 5.581975 AGTAGGCCCTGGATATCTAAGTAC 58.418 45.833 0.00 0.00 0.00 2.73
1983 2036 4.647399 GCTAGTAGGCCCTGGATATCTAAG 59.353 50.000 0.00 1.12 0.00 2.18
1984 2037 4.572223 GGCTAGTAGGCCCTGGATATCTAA 60.572 50.000 12.66 0.00 45.92 2.10
1985 2038 3.052793 GGCTAGTAGGCCCTGGATATCTA 60.053 52.174 12.66 0.00 45.92 1.98
1986 2039 2.292587 GGCTAGTAGGCCCTGGATATCT 60.293 54.545 12.66 0.00 45.92 1.98
1987 2040 2.112190 GGCTAGTAGGCCCTGGATATC 58.888 57.143 12.66 0.00 45.92 1.63
1988 2041 2.255770 GGCTAGTAGGCCCTGGATAT 57.744 55.000 12.66 0.00 45.92 1.63
1989 2042 3.788563 GGCTAGTAGGCCCTGGATA 57.211 57.895 12.66 0.00 45.92 2.59
1990 2043 4.650085 GGCTAGTAGGCCCTGGAT 57.350 61.111 12.66 0.00 45.92 3.41
2005 2058 6.770785 TGGGTATATGTGTCTTTTCTTATGGC 59.229 38.462 0.00 0.00 0.00 4.40
2023 2076 9.461312 GCATTCCTGTCATTAAATATGGGTATA 57.539 33.333 0.00 0.00 0.00 1.47
2024 2077 7.949565 TGCATTCCTGTCATTAAATATGGGTAT 59.050 33.333 0.00 0.00 0.00 2.73
2025 2078 7.293828 TGCATTCCTGTCATTAAATATGGGTA 58.706 34.615 0.00 0.00 0.00 3.69
2026 2079 6.135454 TGCATTCCTGTCATTAAATATGGGT 58.865 36.000 0.00 0.00 0.00 4.51
2027 2080 6.653526 TGCATTCCTGTCATTAAATATGGG 57.346 37.500 0.00 0.00 0.00 4.00
2033 2086 8.352201 GCTGTATAATGCATTCCTGTCATTAAA 58.648 33.333 16.86 0.00 36.20 1.52
2034 2087 7.501892 TGCTGTATAATGCATTCCTGTCATTAA 59.498 33.333 16.86 0.00 36.20 1.40
2035 2088 6.997476 TGCTGTATAATGCATTCCTGTCATTA 59.003 34.615 16.86 0.00 36.60 1.90
2036 2089 5.829391 TGCTGTATAATGCATTCCTGTCATT 59.171 36.000 16.86 0.00 35.11 2.57
2037 2090 5.240183 GTGCTGTATAATGCATTCCTGTCAT 59.760 40.000 16.86 5.26 41.45 3.06
2038 2091 4.576053 GTGCTGTATAATGCATTCCTGTCA 59.424 41.667 16.86 8.55 41.45 3.58
2039 2092 4.818546 AGTGCTGTATAATGCATTCCTGTC 59.181 41.667 16.86 4.36 41.45 3.51
2040 2093 4.785301 AGTGCTGTATAATGCATTCCTGT 58.215 39.130 16.86 3.61 41.45 4.00
2041 2094 4.084171 CGAGTGCTGTATAATGCATTCCTG 60.084 45.833 16.86 10.13 41.02 3.86
2042 2095 4.060900 CGAGTGCTGTATAATGCATTCCT 58.939 43.478 16.86 7.43 41.02 3.36
2043 2096 4.058124 TCGAGTGCTGTATAATGCATTCC 58.942 43.478 16.86 5.98 41.02 3.01
2044 2097 5.657470 TTCGAGTGCTGTATAATGCATTC 57.343 39.130 16.86 2.07 41.45 2.67
2045 2098 5.586243 AGTTTCGAGTGCTGTATAATGCATT 59.414 36.000 17.56 17.56 41.45 3.56
2046 2099 5.118990 AGTTTCGAGTGCTGTATAATGCAT 58.881 37.500 0.00 0.00 41.45 3.96
2047 2100 4.503910 AGTTTCGAGTGCTGTATAATGCA 58.496 39.130 0.00 0.00 36.79 3.96
2048 2101 4.806247 AGAGTTTCGAGTGCTGTATAATGC 59.194 41.667 0.00 0.00 0.00 3.56
2049 2102 6.893958 AAGAGTTTCGAGTGCTGTATAATG 57.106 37.500 0.00 0.00 0.00 1.90
2050 2103 8.198109 ACATAAGAGTTTCGAGTGCTGTATAAT 58.802 33.333 0.00 0.00 0.00 1.28
2051 2104 7.544622 ACATAAGAGTTTCGAGTGCTGTATAA 58.455 34.615 0.00 0.00 0.00 0.98
2052 2105 7.096884 ACATAAGAGTTTCGAGTGCTGTATA 57.903 36.000 0.00 0.00 0.00 1.47
2058 2111 3.424962 GGCAACATAAGAGTTTCGAGTGC 60.425 47.826 0.00 0.00 0.00 4.40
2118 2172 5.048364 TGTCCACGGATAAAATTTGAAGTGG 60.048 40.000 16.33 16.33 46.53 4.00
2132 2186 7.696992 AGTTACATAATTTTTGTCCACGGAT 57.303 32.000 0.00 0.00 0.00 4.18
2155 2209 7.824289 TGTACAGTTTCCTCAGAATGGATAAAG 59.176 37.037 0.00 0.00 36.16 1.85
2161 2215 6.824305 ATTTGTACAGTTTCCTCAGAATGG 57.176 37.500 0.00 0.00 36.16 3.16
2165 2219 9.109393 GCATAATATTTGTACAGTTTCCTCAGA 57.891 33.333 0.00 0.00 0.00 3.27
2178 2232 9.048446 GTTTTCGGGTAGAGCATAATATTTGTA 57.952 33.333 0.00 0.00 0.00 2.41
2198 2252 4.084066 TCTGTTCAATCATGACCGTTTTCG 60.084 41.667 0.00 0.00 43.67 3.46
2235 2289 4.926832 CGTTTTGTCTTCACCCTTGTTTTT 59.073 37.500 0.00 0.00 0.00 1.94
2236 2290 4.218852 TCGTTTTGTCTTCACCCTTGTTTT 59.781 37.500 0.00 0.00 0.00 2.43
2237 2291 3.759618 TCGTTTTGTCTTCACCCTTGTTT 59.240 39.130 0.00 0.00 0.00 2.83
2238 2292 3.349022 TCGTTTTGTCTTCACCCTTGTT 58.651 40.909 0.00 0.00 0.00 2.83
2239 2293 2.993937 TCGTTTTGTCTTCACCCTTGT 58.006 42.857 0.00 0.00 0.00 3.16
2240 2294 4.568152 ATTCGTTTTGTCTTCACCCTTG 57.432 40.909 0.00 0.00 0.00 3.61
2241 2295 6.238648 AGATATTCGTTTTGTCTTCACCCTT 58.761 36.000 0.00 0.00 0.00 3.95
2242 2296 5.805728 AGATATTCGTTTTGTCTTCACCCT 58.194 37.500 0.00 0.00 0.00 4.34
2243 2297 7.280205 ACATAGATATTCGTTTTGTCTTCACCC 59.720 37.037 0.00 0.00 0.00 4.61
2244 2298 8.116753 CACATAGATATTCGTTTTGTCTTCACC 58.883 37.037 0.00 0.00 0.00 4.02
2245 2299 8.656849 ACACATAGATATTCGTTTTGTCTTCAC 58.343 33.333 0.00 0.00 0.00 3.18
2246 2300 8.655970 CACACATAGATATTCGTTTTGTCTTCA 58.344 33.333 0.00 0.00 0.00 3.02
2247 2301 8.656849 ACACACATAGATATTCGTTTTGTCTTC 58.343 33.333 0.00 0.00 0.00 2.87
2248 2302 8.443160 CACACACATAGATATTCGTTTTGTCTT 58.557 33.333 0.00 0.00 0.00 3.01
2249 2303 7.602644 ACACACACATAGATATTCGTTTTGTCT 59.397 33.333 0.00 0.00 0.00 3.41
2250 2304 7.739295 ACACACACATAGATATTCGTTTTGTC 58.261 34.615 0.00 0.00 0.00 3.18
2251 2305 7.667043 ACACACACATAGATATTCGTTTTGT 57.333 32.000 0.00 0.00 0.00 2.83
2254 2308 8.377681 CGTTTACACACACATAGATATTCGTTT 58.622 33.333 0.00 0.00 0.00 3.60
2255 2309 7.463648 GCGTTTACACACACATAGATATTCGTT 60.464 37.037 0.00 0.00 0.00 3.85
2256 2310 6.020121 GCGTTTACACACACATAGATATTCGT 60.020 38.462 0.00 0.00 0.00 3.85
2257 2311 6.198403 AGCGTTTACACACACATAGATATTCG 59.802 38.462 0.00 0.00 0.00 3.34
2258 2312 7.222031 TGAGCGTTTACACACACATAGATATTC 59.778 37.037 0.00 0.00 0.00 1.75
2259 2313 7.039270 TGAGCGTTTACACACACATAGATATT 58.961 34.615 0.00 0.00 0.00 1.28
2260 2314 6.569780 TGAGCGTTTACACACACATAGATAT 58.430 36.000 0.00 0.00 0.00 1.63
2261 2315 5.956642 TGAGCGTTTACACACACATAGATA 58.043 37.500 0.00 0.00 0.00 1.98
2262 2316 4.816392 TGAGCGTTTACACACACATAGAT 58.184 39.130 0.00 0.00 0.00 1.98
2263 2317 4.245845 TGAGCGTTTACACACACATAGA 57.754 40.909 0.00 0.00 0.00 1.98
2264 2318 4.625311 TCATGAGCGTTTACACACACATAG 59.375 41.667 0.00 0.00 0.00 2.23
2265 2319 4.561105 TCATGAGCGTTTACACACACATA 58.439 39.130 0.00 0.00 0.00 2.29
2266 2320 3.398406 TCATGAGCGTTTACACACACAT 58.602 40.909 0.00 0.00 0.00 3.21
2267 2321 2.827652 TCATGAGCGTTTACACACACA 58.172 42.857 0.00 0.00 0.00 3.72
2268 2322 4.084066 TCAATCATGAGCGTTTACACACAC 60.084 41.667 0.09 0.00 0.00 3.82
2269 2323 4.061596 TCAATCATGAGCGTTTACACACA 58.938 39.130 0.09 0.00 0.00 3.72
2270 2324 4.661993 TCAATCATGAGCGTTTACACAC 57.338 40.909 0.09 0.00 0.00 3.82
2271 2325 4.513318 TGTTCAATCATGAGCGTTTACACA 59.487 37.500 0.09 0.00 39.43 3.72
2272 2326 5.029650 TGTTCAATCATGAGCGTTTACAC 57.970 39.130 0.09 0.00 39.43 2.90
2273 2327 4.994217 TCTGTTCAATCATGAGCGTTTACA 59.006 37.500 0.09 0.28 39.43 2.41
2274 2328 5.530519 TCTGTTCAATCATGAGCGTTTAC 57.469 39.130 0.09 0.00 39.43 2.01
2275 2329 5.389411 CGTTCTGTTCAATCATGAGCGTTTA 60.389 40.000 0.09 0.00 39.43 2.01
2276 2330 4.611355 CGTTCTGTTCAATCATGAGCGTTT 60.611 41.667 0.09 0.00 39.43 3.60
2277 2331 3.120546 CGTTCTGTTCAATCATGAGCGTT 60.121 43.478 0.09 0.00 39.43 4.84
2278 2332 2.413112 CGTTCTGTTCAATCATGAGCGT 59.587 45.455 0.09 0.00 39.43 5.07
2279 2333 2.667969 TCGTTCTGTTCAATCATGAGCG 59.332 45.455 0.09 0.00 39.43 5.03
2280 2334 4.871993 ATCGTTCTGTTCAATCATGAGC 57.128 40.909 0.09 0.00 36.78 4.26
2281 2335 6.834876 TCAAATCGTTCTGTTCAATCATGAG 58.165 36.000 0.09 0.00 36.78 2.90
2282 2336 6.128200 CCTCAAATCGTTCTGTTCAATCATGA 60.128 38.462 0.00 0.00 0.00 3.07
2283 2337 6.025896 CCTCAAATCGTTCTGTTCAATCATG 58.974 40.000 0.00 0.00 0.00 3.07
2284 2338 5.124457 CCCTCAAATCGTTCTGTTCAATCAT 59.876 40.000 0.00 0.00 0.00 2.45
2285 2339 4.455533 CCCTCAAATCGTTCTGTTCAATCA 59.544 41.667 0.00 0.00 0.00 2.57
2286 2340 4.695455 TCCCTCAAATCGTTCTGTTCAATC 59.305 41.667 0.00 0.00 0.00 2.67
2287 2341 4.651778 TCCCTCAAATCGTTCTGTTCAAT 58.348 39.130 0.00 0.00 0.00 2.57
2288 2342 4.065088 CTCCCTCAAATCGTTCTGTTCAA 58.935 43.478 0.00 0.00 0.00 2.69
2289 2343 3.323691 TCTCCCTCAAATCGTTCTGTTCA 59.676 43.478 0.00 0.00 0.00 3.18
2290 2344 3.926616 TCTCCCTCAAATCGTTCTGTTC 58.073 45.455 0.00 0.00 0.00 3.18
2291 2345 4.351874 TTCTCCCTCAAATCGTTCTGTT 57.648 40.909 0.00 0.00 0.00 3.16
2292 2346 4.351874 TTTCTCCCTCAAATCGTTCTGT 57.648 40.909 0.00 0.00 0.00 3.41
2293 2347 4.515191 TGTTTTCTCCCTCAAATCGTTCTG 59.485 41.667 0.00 0.00 0.00 3.02
2302 2356 2.092861 TCACCGTTGTTTTCTCCCTCAA 60.093 45.455 0.00 0.00 0.00 3.02
2303 2357 1.487142 TCACCGTTGTTTTCTCCCTCA 59.513 47.619 0.00 0.00 0.00 3.86
2331 2385 6.479990 GCACACACACACACATAGATATATGT 59.520 38.462 7.18 7.18 40.99 2.29
2333 2387 6.479990 GTGCACACACACACACATAGATATAT 59.520 38.462 13.17 0.00 46.61 0.86
2334 2388 5.810074 GTGCACACACACACACATAGATATA 59.190 40.000 13.17 0.00 46.61 0.86
2336 2390 3.993736 GTGCACACACACACACATAGATA 59.006 43.478 13.17 0.00 46.61 1.98
2339 2393 2.668617 GTGCACACACACACACATAG 57.331 50.000 13.17 0.00 46.61 2.23
2358 2412 3.772560 TATGTGTGTGTGCGCGCG 61.773 61.111 28.44 28.44 38.36 6.86
2359 2413 2.202171 GTATGTGTGTGTGCGCGC 60.202 61.111 27.26 27.26 36.27 6.86
2360 2414 2.093799 CGTATGTGTGTGTGCGCG 59.906 61.111 0.00 0.00 0.00 6.86
2361 2415 2.314647 ACCGTATGTGTGTGTGCGC 61.315 57.895 0.00 0.00 0.00 6.09
2362 2416 1.491127 CACCGTATGTGTGTGTGCG 59.509 57.895 0.00 0.00 40.26 5.34
2363 2417 1.866237 CCACCGTATGTGTGTGTGC 59.134 57.895 0.00 0.00 43.85 4.57
2364 2418 1.866237 GCCACCGTATGTGTGTGTG 59.134 57.895 0.00 0.00 43.85 3.82
2365 2419 1.666553 CGCCACCGTATGTGTGTGT 60.667 57.895 0.00 0.00 43.85 3.72
2366 2420 3.022401 GCGCCACCGTATGTGTGTG 62.022 63.158 0.00 0.00 43.85 3.82
2367 2421 1.879737 TAGCGCCACCGTATGTGTGT 61.880 55.000 2.29 0.00 43.85 3.72
2368 2422 0.529773 ATAGCGCCACCGTATGTGTG 60.530 55.000 2.29 0.00 43.85 3.82
2369 2423 0.249322 GATAGCGCCACCGTATGTGT 60.249 55.000 2.29 0.00 43.85 3.72
2370 2424 1.275471 CGATAGCGCCACCGTATGTG 61.275 60.000 2.29 0.00 45.01 3.21
2371 2425 1.007734 CGATAGCGCCACCGTATGT 60.008 57.895 2.29 0.00 36.67 2.29
2372 2426 1.007734 ACGATAGCGCCACCGTATG 60.008 57.895 15.22 0.73 42.48 2.39
2425 2483 0.107214 CCTGCCCGCTTAATGAGGAA 60.107 55.000 0.00 0.00 37.90 3.36
2430 2488 3.409856 CGACCTGCCCGCTTAATG 58.590 61.111 0.00 0.00 0.00 1.90
2469 2527 5.185056 ACATTACCCTCAACAAATTAGTGGC 59.815 40.000 0.00 0.00 0.00 5.01
2491 2549 5.631512 GTGTTACTTTTTCTTGCACACAACA 59.368 36.000 0.00 0.00 34.48 3.33
2536 2594 0.970937 AGTCGGGATGTCGTGACCAT 60.971 55.000 0.00 0.00 31.75 3.55
2621 2679 2.854967 AGGGATCAAACCATGGATGACT 59.145 45.455 21.47 12.37 0.00 3.41
2706 2840 6.491403 ACTGCATGATAAAGAATTACCATCCC 59.509 38.462 0.00 0.00 0.00 3.85
2733 2867 5.395657 GGATCACACCATTGATGACTCACTA 60.396 44.000 0.00 0.00 36.30 2.74
2829 2963 8.190784 GCCAATTAGTGAGCATGTAGTAATTTT 58.809 33.333 12.70 0.00 32.75 1.82
2878 3019 5.808540 TCACTGCATGGTAACGAATTACTAC 59.191 40.000 0.00 0.00 40.59 2.73
2880 3021 4.827692 TCACTGCATGGTAACGAATTACT 58.172 39.130 0.00 0.00 40.59 2.24
2925 3066 2.651361 CAGAGTCCACCGCTTCGT 59.349 61.111 0.00 0.00 0.00 3.85
2935 3076 3.382048 AACAACTTACGACCAGAGTCC 57.618 47.619 0.00 0.00 40.12 3.85
2957 3098 4.494199 GGCTCGTTCATGAAATTTCTACCG 60.494 45.833 18.64 7.09 0.00 4.02
2962 3103 2.785679 CGGGCTCGTTCATGAAATTTC 58.214 47.619 10.35 11.41 0.00 2.17
2999 3140 0.812412 TAATTAGCCGAACCCTGCGC 60.812 55.000 0.00 0.00 0.00 6.09
3000 3141 1.202486 TCTAATTAGCCGAACCCTGCG 60.202 52.381 7.67 0.00 0.00 5.18
3001 3142 2.484889 CTCTAATTAGCCGAACCCTGC 58.515 52.381 7.67 0.00 0.00 4.85
3002 3143 2.158957 TGCTCTAATTAGCCGAACCCTG 60.159 50.000 7.67 0.00 42.05 4.45
3003 3144 2.116238 TGCTCTAATTAGCCGAACCCT 58.884 47.619 7.67 0.00 42.05 4.34
3004 3145 2.614829 TGCTCTAATTAGCCGAACCC 57.385 50.000 7.67 0.00 42.05 4.11
3005 3146 3.991121 GAGATGCTCTAATTAGCCGAACC 59.009 47.826 7.67 0.00 42.05 3.62
3006 3147 3.991121 GGAGATGCTCTAATTAGCCGAAC 59.009 47.826 7.67 0.13 42.05 3.95
3007 3148 3.641436 TGGAGATGCTCTAATTAGCCGAA 59.359 43.478 7.67 0.00 42.05 4.30
3008 3149 3.230976 TGGAGATGCTCTAATTAGCCGA 58.769 45.455 7.67 0.00 42.05 5.54
3009 3150 3.583806 CTGGAGATGCTCTAATTAGCCG 58.416 50.000 7.67 2.80 42.05 5.52
3010 3151 3.333804 GCTGGAGATGCTCTAATTAGCC 58.666 50.000 7.67 2.23 42.05 3.93
3011 3152 3.333804 GGCTGGAGATGCTCTAATTAGC 58.666 50.000 7.67 0.06 43.08 3.09
3012 3153 3.006323 ACGGCTGGAGATGCTCTAATTAG 59.994 47.826 6.11 6.11 0.00 1.73
3013 3154 2.965831 ACGGCTGGAGATGCTCTAATTA 59.034 45.455 0.00 0.00 0.00 1.40
3014 3155 1.765314 ACGGCTGGAGATGCTCTAATT 59.235 47.619 0.00 0.00 0.00 1.40
3015 3156 1.418334 ACGGCTGGAGATGCTCTAAT 58.582 50.000 0.00 0.00 0.00 1.73
3042 3183 1.226262 GATTTTAGGCGCCCCCTGA 59.774 57.895 26.15 6.15 45.91 3.86
3188 3334 8.664798 AGTTTGCCAAAATTTAGACTTGTTTTC 58.335 29.630 0.00 0.00 0.00 2.29
3195 3341 5.527214 GCCAAAGTTTGCCAAAATTTAGACT 59.473 36.000 14.39 0.00 36.64 3.24
3318 3468 1.889530 AAAGAGGAGAAGGCCGACGG 61.890 60.000 10.29 10.29 0.00 4.79
3433 3586 1.166129 CGAAGAAGGAGGAGTCGTCA 58.834 55.000 14.42 0.00 0.00 4.35
3512 3665 4.077184 CCCACTACTTCGCCGCCA 62.077 66.667 0.00 0.00 0.00 5.69
3622 4411 0.036010 CCTGTTCGAGGCCAACATCT 60.036 55.000 5.01 0.00 34.01 2.90
3727 4517 3.184382 TCCCACTCCAATCACTCACTA 57.816 47.619 0.00 0.00 0.00 2.74
3734 4529 0.846427 AGCCCTTCCCACTCCAATCA 60.846 55.000 0.00 0.00 0.00 2.57
3738 4533 3.003173 CGAGCCCTTCCCACTCCA 61.003 66.667 0.00 0.00 0.00 3.86
4141 4960 1.450312 CAGGAGCCCGATTTTCGCT 60.450 57.895 0.00 0.00 38.82 4.93
4189 5008 0.944311 GAGGTGCTTTTCTCGCGTCA 60.944 55.000 5.77 0.00 0.00 4.35
4197 5016 4.303257 CCTCCCGAGGTGCTTTTC 57.697 61.111 2.31 0.00 43.61 2.29
4248 5067 1.674441 TCGAACCAGTCAGTATAGGCG 59.326 52.381 0.00 0.00 0.00 5.52
4249 5068 3.609644 CGATCGAACCAGTCAGTATAGGC 60.610 52.174 10.26 0.00 0.00 3.93
4250 5069 3.813724 TCGATCGAACCAGTCAGTATAGG 59.186 47.826 16.99 0.00 0.00 2.57
4251 5070 4.611807 GCTCGATCGAACCAGTCAGTATAG 60.612 50.000 19.92 3.13 0.00 1.31
4252 5071 3.250280 GCTCGATCGAACCAGTCAGTATA 59.750 47.826 19.92 0.00 0.00 1.47
4253 5072 2.033550 GCTCGATCGAACCAGTCAGTAT 59.966 50.000 19.92 0.00 0.00 2.12
4254 5073 1.400846 GCTCGATCGAACCAGTCAGTA 59.599 52.381 19.92 0.00 0.00 2.74
4255 5074 0.171455 GCTCGATCGAACCAGTCAGT 59.829 55.000 19.92 0.00 0.00 3.41
4256 5075 0.863538 CGCTCGATCGAACCAGTCAG 60.864 60.000 19.92 5.82 0.00 3.51
4257 5076 1.136774 CGCTCGATCGAACCAGTCA 59.863 57.895 19.92 0.00 0.00 3.41
4258 5077 1.586564 CCGCTCGATCGAACCAGTC 60.587 63.158 19.92 3.34 0.00 3.51
4259 5078 2.490217 CCGCTCGATCGAACCAGT 59.510 61.111 19.92 0.00 0.00 4.00
4260 5079 2.956964 GCCGCTCGATCGAACCAG 60.957 66.667 19.92 8.50 0.00 4.00
4261 5080 4.508128 GGCCGCTCGATCGAACCA 62.508 66.667 19.92 0.00 0.00 3.67
4282 5101 4.797215 CGCGTATTTATCTTAGCGTATGC 58.203 43.478 0.00 0.00 42.26 3.14
4288 5107 5.052764 GCCGTATACGCGTATTTATCTTAGC 60.053 44.000 34.24 20.95 38.18 3.09
4289 5108 6.194142 CAGCCGTATACGCGTATTTATCTTAG 59.806 42.308 34.24 16.26 38.18 2.18
4290 5109 6.023435 CAGCCGTATACGCGTATTTATCTTA 58.977 40.000 34.24 13.89 38.18 2.10
4291 5110 4.855388 CAGCCGTATACGCGTATTTATCTT 59.145 41.667 34.24 13.92 38.18 2.40
4292 5111 4.409570 CAGCCGTATACGCGTATTTATCT 58.590 43.478 34.24 22.49 38.18 1.98
4293 5112 3.001365 GCAGCCGTATACGCGTATTTATC 60.001 47.826 34.24 20.88 38.18 1.75
4294 5113 2.919229 GCAGCCGTATACGCGTATTTAT 59.081 45.455 34.24 16.85 38.18 1.40
4295 5114 2.318578 GCAGCCGTATACGCGTATTTA 58.681 47.619 34.24 16.88 38.18 1.40
4296 5115 1.134226 GCAGCCGTATACGCGTATTT 58.866 50.000 34.24 16.92 38.18 1.40
4297 5116 1.000233 CGCAGCCGTATACGCGTATT 61.000 55.000 34.24 19.22 42.66 1.89
4298 5117 1.441515 CGCAGCCGTATACGCGTAT 60.442 57.895 32.13 32.13 42.66 3.06
4299 5118 2.051971 CGCAGCCGTATACGCGTA 60.052 61.111 22.94 22.94 42.66 4.42
4327 5146 4.457603 AGATTACCTAAAAATGCGCACACA 59.542 37.500 14.90 0.00 0.00 3.72
4331 5150 4.260456 GCGTAGATTACCTAAAAATGCGCA 60.260 41.667 14.96 14.96 39.12 6.09
4344 5163 2.007641 CGGTCGGCGCGTAGATTAC 61.008 63.158 8.43 0.00 0.00 1.89
4359 5178 0.461961 GAGTGATTAGGAGCAGCGGT 59.538 55.000 0.00 0.00 0.00 5.68
4377 5196 4.293648 CCACTCACACACCCGCGA 62.294 66.667 8.23 0.00 0.00 5.87
4383 5202 0.946221 CTTCTCCGCCACTCACACAC 60.946 60.000 0.00 0.00 0.00 3.82
4388 5207 0.541998 TCTTCCTTCTCCGCCACTCA 60.542 55.000 0.00 0.00 0.00 3.41
4390 5209 1.280457 AATCTTCCTTCTCCGCCACT 58.720 50.000 0.00 0.00 0.00 4.00
4393 5212 2.680339 CTCAAAATCTTCCTTCTCCGCC 59.320 50.000 0.00 0.00 0.00 6.13
4451 5270 9.461312 AGAGCAACACATGGTAATAGAAATAAA 57.539 29.630 0.00 0.00 40.59 1.40
4452 5271 8.892723 CAGAGCAACACATGGTAATAGAAATAA 58.107 33.333 0.00 0.00 40.59 1.40
4481 5300 2.977914 AGCAATGAGTAGTGACGCAAT 58.022 42.857 0.00 0.00 38.96 3.56
4516 5335 2.698797 ACTAGGACCATTACCATCCGTG 59.301 50.000 0.00 0.00 37.60 4.94
4531 5350 9.498176 GTTTTACATCTGGTAAGAAAACTAGGA 57.502 33.333 0.00 0.00 42.63 2.94
4547 5366 5.483685 TGAGTAGCCACTGTTTTACATCT 57.516 39.130 0.00 0.00 34.21 2.90
4590 5409 5.982890 AAACCAAGGTCCATTACATTCAG 57.017 39.130 0.00 0.00 27.18 3.02
4591 5410 6.739331 AAAAACCAAGGTCCATTACATTCA 57.261 33.333 0.00 0.00 27.18 2.57
4615 5434 8.692710 CCATTCATACTTATTATAGAGCCGGTA 58.307 37.037 1.90 0.00 0.00 4.02
4616 5435 7.180408 ACCATTCATACTTATTATAGAGCCGGT 59.820 37.037 1.90 0.00 0.00 5.28
4617 5436 7.556844 ACCATTCATACTTATTATAGAGCCGG 58.443 38.462 0.00 0.00 0.00 6.13
4653 5517 1.343142 TCTCGCTGCTGGTAAAAGACA 59.657 47.619 0.00 0.00 0.00 3.41
4664 5528 0.901124 AACCTTCATCTCTCGCTGCT 59.099 50.000 0.00 0.00 0.00 4.24
4788 5653 9.083422 TGGGAAAAATCAATCATAACACTTACA 57.917 29.630 0.00 0.00 0.00 2.41
4803 5668 1.238625 GGGCGACGTGGGAAAAATCA 61.239 55.000 0.00 0.00 0.00 2.57
4823 5691 1.352156 CTAACCAGGTCGAAGTGCGC 61.352 60.000 0.00 0.00 40.61 6.09
4851 5719 0.249741 GCTCCGGCCGCTTAATTAGA 60.250 55.000 22.85 8.07 0.00 2.10
4861 5729 3.912907 AATCCTACGCTCCGGCCG 61.913 66.667 21.04 21.04 34.44 6.13
4862 5730 2.280186 CAATCCTACGCTCCGGCC 60.280 66.667 0.00 0.00 34.44 6.13
4863 5731 2.280186 CCAATCCTACGCTCCGGC 60.280 66.667 0.00 0.00 0.00 6.13
4864 5732 2.421739 CCCAATCCTACGCTCCGG 59.578 66.667 0.00 0.00 0.00 5.14
4865 5733 2.280186 GCCCAATCCTACGCTCCG 60.280 66.667 0.00 0.00 0.00 4.63
4866 5734 1.227674 CTGCCCAATCCTACGCTCC 60.228 63.158 0.00 0.00 0.00 4.70
4867 5735 0.178068 TTCTGCCCAATCCTACGCTC 59.822 55.000 0.00 0.00 0.00 5.03
4868 5736 0.839946 ATTCTGCCCAATCCTACGCT 59.160 50.000 0.00 0.00 0.00 5.07
4869 5737 2.143925 GTATTCTGCCCAATCCTACGC 58.856 52.381 0.00 0.00 0.00 4.42
4870 5738 2.404215 CGTATTCTGCCCAATCCTACG 58.596 52.381 0.00 0.00 0.00 3.51
4871 5739 2.143925 GCGTATTCTGCCCAATCCTAC 58.856 52.381 0.00 0.00 0.00 3.18
4872 5740 1.270094 CGCGTATTCTGCCCAATCCTA 60.270 52.381 0.00 0.00 0.00 2.94
4873 5741 0.532862 CGCGTATTCTGCCCAATCCT 60.533 55.000 0.00 0.00 0.00 3.24
4874 5742 1.941812 CGCGTATTCTGCCCAATCC 59.058 57.895 0.00 0.00 0.00 3.01
4875 5743 1.279840 GCGCGTATTCTGCCCAATC 59.720 57.895 8.43 0.00 0.00 2.67
4876 5744 0.819259 ATGCGCGTATTCTGCCCAAT 60.819 50.000 8.43 0.00 0.00 3.16
4877 5745 1.451207 ATGCGCGTATTCTGCCCAA 60.451 52.632 8.43 0.00 0.00 4.12
4878 5746 2.179547 CATGCGCGTATTCTGCCCA 61.180 57.895 7.06 0.00 0.00 5.36
4879 5747 2.633657 CATGCGCGTATTCTGCCC 59.366 61.111 7.06 0.00 0.00 5.36
4880 5748 2.051882 GCATGCGCGTATTCTGCC 60.052 61.111 7.06 0.00 0.00 4.85
4881 5749 0.317269 AATGCATGCGCGTATTCTGC 60.317 50.000 14.09 10.81 42.97 4.26
4882 5750 2.947754 TAATGCATGCGCGTATTCTG 57.052 45.000 14.09 0.00 42.97 3.02
4883 5751 5.049749 TGTTTATAATGCATGCGCGTATTCT 60.050 36.000 14.09 2.66 42.97 2.40
4884 5752 5.143660 TGTTTATAATGCATGCGCGTATTC 58.856 37.500 14.09 2.78 42.97 1.75
4885 5753 5.102020 TGTTTATAATGCATGCGCGTATT 57.898 34.783 14.09 9.59 42.97 1.89
4886 5754 4.740741 TGTTTATAATGCATGCGCGTAT 57.259 36.364 14.09 5.70 42.97 3.06
4887 5755 4.537936 TTGTTTATAATGCATGCGCGTA 57.462 36.364 14.09 2.40 42.97 4.42
4888 5756 3.412981 TTGTTTATAATGCATGCGCGT 57.587 38.095 14.09 0.00 42.97 6.01
4889 5757 6.615809 AATATTGTTTATAATGCATGCGCG 57.384 33.333 14.09 0.00 42.97 6.86
4890 5758 7.946237 GTGAAATATTGTTTATAATGCATGCGC 59.054 33.333 14.09 0.00 39.24 6.09
4891 5759 8.966194 TGTGAAATATTGTTTATAATGCATGCG 58.034 29.630 14.09 0.00 0.00 4.73
4961 5829 6.655003 ACCCATTACACTACTCATTTGACAAG 59.345 38.462 0.00 0.00 0.00 3.16
4969 5837 5.684704 CATCCAACCCATTACACTACTCAT 58.315 41.667 0.00 0.00 0.00 2.90
4971 5839 3.877508 GCATCCAACCCATTACACTACTC 59.122 47.826 0.00 0.00 0.00 2.59
5009 5877 9.964354 CCAGTTAATATCATCTTCCATGGATTA 57.036 33.333 17.06 7.17 0.00 1.75
5010 5878 8.451245 ACCAGTTAATATCATCTTCCATGGATT 58.549 33.333 17.06 6.74 0.00 3.01
5012 5880 7.392766 ACCAGTTAATATCATCTTCCATGGA 57.607 36.000 11.44 11.44 0.00 3.41
5279 6152 4.275662 TGCAACGTTGAAGTATTTTGACG 58.724 39.130 31.62 0.01 36.65 4.35
5378 6251 5.354234 GGCTTCCATCTCGTTGATTTTTCTA 59.646 40.000 0.00 0.00 32.05 2.10
5380 6253 4.082787 TGGCTTCCATCTCGTTGATTTTTC 60.083 41.667 0.00 0.00 32.05 2.29
5413 6286 3.926527 CCCGGTGATATACATCATGAACG 59.073 47.826 0.00 0.00 43.03 3.95
5443 6316 6.131972 TCCTCTTCCACTCAATTTCATCTT 57.868 37.500 0.00 0.00 0.00 2.40
5455 6328 6.060788 GCATCAGAAAATATCCTCTTCCACT 58.939 40.000 0.00 0.00 0.00 4.00
5582 6455 7.334858 TCAGGTATGTGTGCAACTTATTATCA 58.665 34.615 0.00 0.00 38.04 2.15
5624 6497 4.329801 ACATACAGTTCATGCACACATACG 59.670 41.667 0.00 0.00 33.67 3.06
5753 6626 3.618690 AGATTGTAGTCCTGCTTGGTC 57.381 47.619 0.00 0.00 37.07 4.02
5824 6697 7.338449 TGGCTATTTCAACCACTAGTATTTTCC 59.662 37.037 0.00 0.00 0.00 3.13
5891 6764 4.323409 GGGTTGCCATGTTTGTCCAATAAT 60.323 41.667 0.00 0.00 0.00 1.28
5912 6785 3.671716 ACTACTTTTCTTTAGTGGCGGG 58.328 45.455 0.00 0.00 0.00 6.13
5921 6794 3.139077 CGGCCACAGACTACTTTTCTTT 58.861 45.455 2.24 0.00 0.00 2.52
5943 6816 0.603975 GGCAGACCTTCAGTGGTGTC 60.604 60.000 0.00 0.00 41.00 3.67
5957 6830 4.329545 GTCGGGTTGCCAGGCAGA 62.330 66.667 15.50 5.53 40.61 4.26
5963 6836 1.900981 CACCATTGTCGGGTTGCCA 60.901 57.895 0.00 0.00 36.19 4.92
5972 6845 2.616842 ACTCAACGAAACCACCATTGTC 59.383 45.455 0.00 0.00 0.00 3.18
5973 6846 2.650322 ACTCAACGAAACCACCATTGT 58.350 42.857 0.00 0.00 0.00 2.71
5974 6847 4.062293 TCTACTCAACGAAACCACCATTG 58.938 43.478 0.00 0.00 0.00 2.82
5976 6849 4.062991 GTTCTACTCAACGAAACCACCAT 58.937 43.478 0.00 0.00 0.00 3.55
6074 7013 7.575414 TTAGCATAAGAAAACACTTTCACCA 57.425 32.000 0.86 0.00 42.99 4.17
6079 7018 8.817100 GCAGTTTTTAGCATAAGAAAACACTTT 58.183 29.630 11.89 0.00 42.65 2.66
6096 7035 1.033574 CAACCCCGGTGCAGTTTTTA 58.966 50.000 0.00 0.00 0.00 1.52
6114 7053 7.175347 AGAGTTACACTTGCTGAATCTATCA 57.825 36.000 0.00 0.00 36.38 2.15
6125 7064 7.387948 TCTTTTCTTATGGAGAGTTACACTTGC 59.612 37.037 0.00 0.00 35.37 4.01
6148 7087 4.563061 ACTACGTTATTTGCCGTCTTCTT 58.437 39.130 0.00 0.00 38.43 2.52
6190 7133 9.379791 CAATCTAGCATGAGCATGAGATATTTA 57.620 33.333 14.27 0.00 45.49 1.40
6197 7140 4.024809 CACACAATCTAGCATGAGCATGAG 60.025 45.833 14.27 4.06 45.49 2.90
6220 7163 9.429359 ACTGCTTATATAACATCAGCTCATTAC 57.571 33.333 11.59 0.00 0.00 1.89
6241 7184 6.814506 ATATAGAATTACGGACGTACTGCT 57.185 37.500 3.79 6.06 0.00 4.24
6267 7210 1.526315 TAGAGTCGGGGAGGGTATCA 58.474 55.000 0.00 0.00 0.00 2.15
6302 7245 3.821600 GCAGAGGGTATCTCGATCTACAA 59.178 47.826 6.80 0.00 46.82 2.41
6347 7290 8.250332 TCATCTTGGTTAAGGCAATTATTTGTC 58.750 33.333 0.00 0.00 37.74 3.18
6405 7348 7.544217 CACTAAGGTTAAATATTTGTGTTGGGC 59.456 37.037 11.05 0.00 0.00 5.36
6423 7366 6.391227 GCAATGTATTATTGCCACTAAGGT 57.609 37.500 12.32 0.00 46.21 3.50
6485 7428 3.445096 GCATGAGTTGGCCTTAATCTTGT 59.555 43.478 3.32 0.00 0.00 3.16
6496 7439 2.146073 AAAGGCGTGCATGAGTTGGC 62.146 55.000 10.93 0.00 0.00 4.52
6518 7461 5.415701 CAGTTTAGGTGGGTAGTTCGTAGTA 59.584 44.000 0.00 0.00 0.00 1.82
6524 7467 2.617276 GGCCAGTTTAGGTGGGTAGTTC 60.617 54.545 0.00 0.00 35.39 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.