Multiple sequence alignment - TraesCS2B01G039700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G039700 chr2B 100.000 6067 0 0 1 6067 18142951 18136885 0.000000e+00 11204.0
1 TraesCS2B01G039700 chr2B 97.179 4147 86 17 1775 5896 17937949 17933809 0.000000e+00 6981.0
2 TraesCS2B01G039700 chr2B 95.134 1418 55 4 142 1549 17939358 17937945 0.000000e+00 2224.0
3 TraesCS2B01G039700 chr2B 80.556 972 163 15 107 1061 18018488 18017526 0.000000e+00 725.0
4 TraesCS2B01G039700 chr2B 82.873 724 112 10 240 957 18127989 18127272 1.840000e-179 640.0
5 TraesCS2B01G039700 chr2B 80.872 826 138 15 117 937 17564184 17564994 3.090000e-177 632.0
6 TraesCS2B01G039700 chr2B 88.608 237 24 3 1543 1778 669358942 669358708 9.950000e-73 285.0
7 TraesCS2B01G039700 chr2B 80.912 351 49 11 5429 5771 17836643 17836303 1.680000e-65 261.0
8 TraesCS2B01G039700 chr2B 87.665 227 19 3 1546 1772 338916009 338916226 7.800000e-64 255.0
9 TraesCS2B01G039700 chr2B 86.385 213 21 2 1546 1758 306084434 306084638 6.120000e-55 226.0
10 TraesCS2B01G039700 chr2B 76.590 346 62 12 5429 5771 17898613 17898284 8.080000e-39 172.0
11 TraesCS2B01G039700 chr2D 93.075 4318 208 34 1775 6067 11612309 11608058 0.000000e+00 6233.0
12 TraesCS2B01G039700 chr2D 95.775 1562 48 6 1 1549 11613861 11612305 0.000000e+00 2503.0
13 TraesCS2B01G039700 chr2D 79.216 1097 202 16 3087 4163 11578068 11576978 0.000000e+00 739.0
14 TraesCS2B01G039700 chr2D 80.712 871 158 9 3043 3908 2259704 2260569 0.000000e+00 669.0
15 TraesCS2B01G039700 chr2D 82.345 725 114 10 240 957 11555092 11554375 8.640000e-173 617.0
16 TraesCS2B01G039700 chr2D 78.795 863 141 17 240 1064 2257674 2258532 5.350000e-150 542.0
17 TraesCS2B01G039700 chr2D 88.688 221 8 10 1567 1786 446933670 446933874 2.810000e-63 254.0
18 TraesCS2B01G039700 chr2D 79.083 349 55 12 5429 5771 11460800 11460464 2.200000e-54 224.0
19 TraesCS2B01G039700 chr2D 76.369 347 61 14 5429 5771 11521888 11521559 3.760000e-37 167.0
20 TraesCS2B01G039700 chr2D 75.275 182 28 11 5799 5966 11521443 11521265 3.030000e-08 71.3
21 TraesCS2B01G039700 chr1A 78.232 1787 325 45 3067 4824 462393288 462395039 0.000000e+00 1086.0
22 TraesCS2B01G039700 chr1A 83.598 756 124 0 240 995 462390518 462391273 0.000000e+00 710.0
23 TraesCS2B01G039700 chr1D 78.149 1794 314 52 3067 4824 363122740 363124491 0.000000e+00 1070.0
24 TraesCS2B01G039700 chr1D 83.091 757 128 0 239 995 363120392 363121148 0.000000e+00 689.0
25 TraesCS2B01G039700 chr1B 77.952 1787 323 48 3069 4824 486480455 486482201 0.000000e+00 1051.0
26 TraesCS2B01G039700 chr1B 85.957 235 21 8 1546 1778 228200418 228200642 2.190000e-59 241.0
27 TraesCS2B01G039700 chr1B 87.931 58 3 3 2866 2921 594054866 594054811 1.410000e-06 65.8
28 TraesCS2B01G039700 chr2A 75.794 1888 371 58 2974 4818 12163580 12161736 0.000000e+00 876.0
29 TraesCS2B01G039700 chr2A 75.902 1801 358 52 3067 4832 12181070 12179311 0.000000e+00 852.0
30 TraesCS2B01G039700 chr2A 81.220 820 137 13 166 977 12225437 12224627 0.000000e+00 645.0
31 TraesCS2B01G039700 chr2A 78.764 259 46 5 5514 5771 12130517 12130267 1.350000e-36 165.0
32 TraesCS2B01G039700 chr2A 80.838 167 23 5 5604 5770 12193814 12193657 8.260000e-24 122.0
33 TraesCS2B01G039700 chrUn 82.070 976 159 13 95 1061 1997016 1996048 0.000000e+00 819.0
34 TraesCS2B01G039700 chrUn 77.445 1135 219 20 3057 4162 230602358 230603484 1.430000e-180 643.0
35 TraesCS2B01G039700 chrUn 83.303 545 78 6 125 662 276507699 276507161 1.970000e-134 490.0
36 TraesCS2B01G039700 chrUn 79.592 343 50 12 5434 5771 276512277 276511950 1.700000e-55 228.0
37 TraesCS2B01G039700 chrUn 77.500 120 24 3 5791 5909 1976513 1976396 1.090000e-07 69.4
38 TraesCS2B01G039700 chr5D 89.024 246 12 3 1534 1779 23837903 23838133 2.140000e-74 291.0
39 TraesCS2B01G039700 chr4B 87.795 254 13 8 1546 1799 5551637 5551402 1.290000e-71 281.0
40 TraesCS2B01G039700 chr4D 86.923 260 17 5 1520 1777 213305246 213305490 5.990000e-70 276.0
41 TraesCS2B01G039700 chr4D 75.926 270 44 17 2689 2946 301027483 301027223 1.070000e-22 119.0
42 TraesCS2B01G039700 chr5B 87.225 227 21 2 1546 1772 2695893 2695675 1.010000e-62 252.0
43 TraesCS2B01G039700 chr3B 86.695 233 22 3 1546 1778 633568530 633568753 3.630000e-62 250.0
44 TraesCS2B01G039700 chr3B 85.408 233 25 6 1552 1784 742441716 742441493 3.660000e-57 233.0
45 TraesCS2B01G039700 chr3B 82.927 82 12 2 2865 2946 3019025 3018946 8.440000e-09 73.1
46 TraesCS2B01G039700 chr6D 94.872 39 2 0 2748 2786 292292026 292292064 1.830000e-05 62.1
47 TraesCS2B01G039700 chr6B 92.308 39 2 1 2748 2786 454720134 454720171 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G039700 chr2B 18136885 18142951 6066 True 11204.0 11204 100.0000 1 6067 1 chr2B.!!$R5 6066
1 TraesCS2B01G039700 chr2B 17933809 17939358 5549 True 4602.5 6981 96.1565 142 5896 2 chr2B.!!$R7 5754
2 TraesCS2B01G039700 chr2B 18017526 18018488 962 True 725.0 725 80.5560 107 1061 1 chr2B.!!$R3 954
3 TraesCS2B01G039700 chr2B 18127272 18127989 717 True 640.0 640 82.8730 240 957 1 chr2B.!!$R4 717
4 TraesCS2B01G039700 chr2B 17564184 17564994 810 False 632.0 632 80.8720 117 937 1 chr2B.!!$F1 820
5 TraesCS2B01G039700 chr2D 11608058 11613861 5803 True 4368.0 6233 94.4250 1 6067 2 chr2D.!!$R5 6066
6 TraesCS2B01G039700 chr2D 11576978 11578068 1090 True 739.0 739 79.2160 3087 4163 1 chr2D.!!$R3 1076
7 TraesCS2B01G039700 chr2D 11554375 11555092 717 True 617.0 617 82.3450 240 957 1 chr2D.!!$R2 717
8 TraesCS2B01G039700 chr2D 2257674 2260569 2895 False 605.5 669 79.7535 240 3908 2 chr2D.!!$F2 3668
9 TraesCS2B01G039700 chr1A 462390518 462395039 4521 False 898.0 1086 80.9150 240 4824 2 chr1A.!!$F1 4584
10 TraesCS2B01G039700 chr1D 363120392 363124491 4099 False 879.5 1070 80.6200 239 4824 2 chr1D.!!$F1 4585
11 TraesCS2B01G039700 chr1B 486480455 486482201 1746 False 1051.0 1051 77.9520 3069 4824 1 chr1B.!!$F2 1755
12 TraesCS2B01G039700 chr2A 12161736 12163580 1844 True 876.0 876 75.7940 2974 4818 1 chr2A.!!$R2 1844
13 TraesCS2B01G039700 chr2A 12179311 12181070 1759 True 852.0 852 75.9020 3067 4832 1 chr2A.!!$R3 1765
14 TraesCS2B01G039700 chr2A 12224627 12225437 810 True 645.0 645 81.2200 166 977 1 chr2A.!!$R5 811
15 TraesCS2B01G039700 chrUn 1996048 1997016 968 True 819.0 819 82.0700 95 1061 1 chrUn.!!$R2 966
16 TraesCS2B01G039700 chrUn 230602358 230603484 1126 False 643.0 643 77.4450 3057 4162 1 chrUn.!!$F1 1105
17 TraesCS2B01G039700 chrUn 276507161 276507699 538 True 490.0 490 83.3030 125 662 1 chrUn.!!$R3 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 705 0.903454 ACGGAAGGTACCCCACTGAG 60.903 60.000 8.74 0.00 0.00 3.35 F
944 979 1.153588 GTTCCCGTCGGCCGAAATA 60.154 57.895 32.93 13.27 39.56 1.40 F
1575 2054 0.320421 TCTCAGTTTACAGGGCGTGC 60.320 55.000 7.17 0.00 0.00 5.34 F
1592 2071 0.324923 TGCACGTACCCCTAGGTCAT 60.325 55.000 8.29 0.00 46.45 3.06 F
1746 2225 0.386476 TGGCAACCTAGGTATACGCG 59.614 55.000 16.67 3.53 0.00 6.01 F
1747 2226 0.386838 GGCAACCTAGGTATACGCGT 59.613 55.000 19.17 19.17 0.00 6.01 F
1748 2227 1.608590 GGCAACCTAGGTATACGCGTA 59.391 52.381 22.94 22.94 0.00 4.42 F
1763 2242 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41 F
1764 2243 3.243501 ACGCGTAGGACTTGTAAACTGAA 60.244 43.478 11.67 0.00 0.00 3.02 F
4529 6204 1.375326 GCCCCCTCAAAGTCTTCGT 59.625 57.895 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1556 2035 0.320421 GCACGCCCTGTAAACTGAGA 60.320 55.000 0.00 0.0 0.00 3.27 R
1749 2228 5.070685 ACCTCCATTTCAGTTTACAAGTCC 58.929 41.667 0.00 0.0 0.00 3.85 R
2953 4278 7.603784 GCAAGGAATAAACATGGACAGATTTTT 59.396 33.333 0.00 0.0 0.00 1.94 R
3649 5297 9.219603 CAAATAGACTAGTTTGTGGATCTTCAA 57.780 33.333 0.00 0.0 32.19 2.69 R
3966 5632 2.376518 ACCTTGAGAAAGGAGGCATGAA 59.623 45.455 11.39 0.0 42.62 2.57 R
4302 5974 1.203523 GCCTAGACAGTCACCACAGAG 59.796 57.143 2.66 0.0 0.00 3.35 R
4509 6184 1.677552 GAAGACTTTGAGGGGGCGA 59.322 57.895 0.00 0.0 0.00 5.54 R
4529 6204 5.663456 AGCTTGAACTTTGCAGAAAATTCA 58.337 33.333 0.00 0.0 0.00 2.57 R
4613 6294 8.718734 ACTTTGTCGACAAAAATATCTAACCTC 58.281 33.333 35.59 0.0 44.24 3.85 R
6028 7730 0.032515 TTGGATCCTAGTCGAGGCCA 60.033 55.000 14.23 0.0 46.25 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.569780 TGAATAGTGTATTATCAGTGCACGT 58.430 36.000 12.01 4.40 37.29 4.49
57 58 1.696832 GCGGCCGATGACTTTGACTC 61.697 60.000 33.48 1.16 0.00 3.36
74 75 1.769098 CTCGCATTCAGATGGCACGG 61.769 60.000 0.00 0.00 33.72 4.94
120 122 2.093783 GCTCGTGTAACCCTGATTTTCG 59.906 50.000 0.00 0.00 0.00 3.46
298 308 1.519719 GCTGGTCGAGCTCCTCAAT 59.480 57.895 16.64 0.00 45.21 2.57
423 433 1.004440 ACCAGCTTGACGAGAAGGC 60.004 57.895 0.00 0.00 0.00 4.35
426 436 1.018226 CAGCTTGACGAGAAGGCCAG 61.018 60.000 5.01 0.00 0.00 4.85
585 620 0.930726 TTGTTCACCAAGGGGAAGGT 59.069 50.000 3.54 0.00 39.10 3.50
640 675 5.755409 TCAATAAGCAAGTCCAAGAGGTA 57.245 39.130 0.00 0.00 35.89 3.08
670 705 0.903454 ACGGAAGGTACCCCACTGAG 60.903 60.000 8.74 0.00 0.00 3.35
683 718 4.289672 ACCCCACTGAGAATATTGTCACTT 59.710 41.667 11.06 0.00 0.00 3.16
811 846 2.501723 GCTCTTGGAGGGAGACAATGTA 59.498 50.000 0.00 0.00 33.03 2.29
937 972 4.379143 GCGTTTGTTCCCGTCGGC 62.379 66.667 5.50 0.00 0.00 5.54
944 979 1.153588 GTTCCCGTCGGCCGAAATA 60.154 57.895 32.93 13.27 39.56 1.40
1358 1665 5.791336 TGATGCATTCTAGGAAGTATCGT 57.209 39.130 0.00 0.00 0.00 3.73
1359 1666 5.773575 TGATGCATTCTAGGAAGTATCGTC 58.226 41.667 0.00 0.00 0.00 4.20
1551 2030 8.712285 TTAAAAGAGTGTATGCATGTACTACC 57.288 34.615 10.16 3.02 0.00 3.18
1552 2031 6.546428 AAAGAGTGTATGCATGTACTACCT 57.454 37.500 10.16 5.20 0.00 3.08
1553 2032 5.776173 AGAGTGTATGCATGTACTACCTC 57.224 43.478 10.16 7.94 0.00 3.85
1554 2033 5.450453 AGAGTGTATGCATGTACTACCTCT 58.550 41.667 10.16 9.90 0.00 3.69
1555 2034 5.533154 AGAGTGTATGCATGTACTACCTCTC 59.467 44.000 10.16 9.46 0.00 3.20
1556 2035 5.450453 AGTGTATGCATGTACTACCTCTCT 58.550 41.667 10.16 0.00 0.00 3.10
1557 2036 5.533154 AGTGTATGCATGTACTACCTCTCTC 59.467 44.000 10.16 0.00 0.00 3.20
1558 2037 5.533154 GTGTATGCATGTACTACCTCTCTCT 59.467 44.000 10.16 0.00 0.00 3.10
1559 2038 5.765677 TGTATGCATGTACTACCTCTCTCTC 59.234 44.000 10.16 0.00 0.00 3.20
1560 2039 4.236527 TGCATGTACTACCTCTCTCTCA 57.763 45.455 0.00 0.00 0.00 3.27
1561 2040 4.203226 TGCATGTACTACCTCTCTCTCAG 58.797 47.826 0.00 0.00 0.00 3.35
1562 2041 4.204012 GCATGTACTACCTCTCTCTCAGT 58.796 47.826 0.00 0.00 0.00 3.41
1563 2042 4.642885 GCATGTACTACCTCTCTCTCAGTT 59.357 45.833 0.00 0.00 0.00 3.16
1564 2043 5.126384 GCATGTACTACCTCTCTCTCAGTTT 59.874 44.000 0.00 0.00 0.00 2.66
1565 2044 6.319152 GCATGTACTACCTCTCTCTCAGTTTA 59.681 42.308 0.00 0.00 0.00 2.01
1566 2045 7.680113 GCATGTACTACCTCTCTCTCAGTTTAC 60.680 44.444 0.00 0.00 0.00 2.01
1567 2046 6.776744 TGTACTACCTCTCTCTCAGTTTACA 58.223 40.000 0.00 0.00 0.00 2.41
1568 2047 6.879993 TGTACTACCTCTCTCTCAGTTTACAG 59.120 42.308 0.00 0.00 0.00 2.74
1569 2048 5.258051 ACTACCTCTCTCTCAGTTTACAGG 58.742 45.833 0.00 0.00 0.00 4.00
1570 2049 3.436243 ACCTCTCTCTCAGTTTACAGGG 58.564 50.000 0.00 0.00 0.00 4.45
1571 2050 2.167487 CCTCTCTCTCAGTTTACAGGGC 59.833 54.545 0.00 0.00 0.00 5.19
1572 2051 1.819288 TCTCTCTCAGTTTACAGGGCG 59.181 52.381 0.00 0.00 0.00 6.13
1573 2052 1.546476 CTCTCTCAGTTTACAGGGCGT 59.454 52.381 0.00 0.00 0.00 5.68
1574 2053 1.272490 TCTCTCAGTTTACAGGGCGTG 59.728 52.381 5.50 5.50 0.00 5.34
1575 2054 0.320421 TCTCAGTTTACAGGGCGTGC 60.320 55.000 7.17 0.00 0.00 5.34
1576 2055 0.602638 CTCAGTTTACAGGGCGTGCA 60.603 55.000 7.17 0.00 0.00 4.57
1577 2056 0.882927 TCAGTTTACAGGGCGTGCAC 60.883 55.000 6.82 6.82 0.00 4.57
1578 2057 1.959226 AGTTTACAGGGCGTGCACG 60.959 57.895 34.01 34.01 43.27 5.34
1579 2058 2.109387 TTTACAGGGCGTGCACGT 59.891 55.556 36.80 21.32 42.22 4.49
1580 2059 0.945265 GTTTACAGGGCGTGCACGTA 60.945 55.000 36.80 20.26 42.22 3.57
1581 2060 0.945265 TTTACAGGGCGTGCACGTAC 60.945 55.000 36.80 28.93 42.22 3.67
1582 2061 2.768503 TTACAGGGCGTGCACGTACC 62.769 60.000 36.80 34.88 42.22 3.34
1586 2065 3.762247 GGCGTGCACGTACCCCTA 61.762 66.667 36.80 0.00 42.22 3.53
1587 2066 2.202703 GCGTGCACGTACCCCTAG 60.203 66.667 36.80 9.58 42.22 3.02
1588 2067 2.493030 CGTGCACGTACCCCTAGG 59.507 66.667 30.50 0.06 35.06 3.02
1590 2069 1.514553 GTGCACGTACCCCTAGGTC 59.485 63.158 8.29 0.00 46.45 3.85
1591 2070 1.077086 TGCACGTACCCCTAGGTCA 59.923 57.895 8.29 0.00 46.45 4.02
1592 2071 0.324923 TGCACGTACCCCTAGGTCAT 60.325 55.000 8.29 0.00 46.45 3.06
1593 2072 0.388294 GCACGTACCCCTAGGTCATC 59.612 60.000 8.29 0.00 46.45 2.92
1594 2073 1.771565 CACGTACCCCTAGGTCATCA 58.228 55.000 8.29 0.00 46.45 3.07
1595 2074 2.104967 CACGTACCCCTAGGTCATCAA 58.895 52.381 8.29 0.00 46.45 2.57
1596 2075 2.698797 CACGTACCCCTAGGTCATCAAT 59.301 50.000 8.29 0.00 46.45 2.57
1597 2076 3.134081 CACGTACCCCTAGGTCATCAATT 59.866 47.826 8.29 0.00 46.45 2.32
1598 2077 3.778629 ACGTACCCCTAGGTCATCAATTT 59.221 43.478 8.29 0.00 46.45 1.82
1599 2078 4.127171 CGTACCCCTAGGTCATCAATTTG 58.873 47.826 8.29 0.00 46.45 2.32
1600 2079 4.141801 CGTACCCCTAGGTCATCAATTTGA 60.142 45.833 8.29 0.75 46.45 2.69
1601 2080 4.236527 ACCCCTAGGTCATCAATTTGAC 57.763 45.455 8.29 2.20 46.45 3.18
1602 2081 3.852578 ACCCCTAGGTCATCAATTTGACT 59.147 43.478 8.29 0.00 46.45 3.41
1603 2082 5.036916 ACCCCTAGGTCATCAATTTGACTA 58.963 41.667 8.29 0.00 46.45 2.59
1604 2083 5.491078 ACCCCTAGGTCATCAATTTGACTAA 59.509 40.000 8.29 0.00 46.45 2.24
1605 2084 5.823045 CCCCTAGGTCATCAATTTGACTAAC 59.177 44.000 8.29 0.73 44.39 2.34
1606 2085 5.823045 CCCTAGGTCATCAATTTGACTAACC 59.177 44.000 8.29 14.44 44.39 2.85
1607 2086 6.353082 CCCTAGGTCATCAATTTGACTAACCT 60.353 42.308 22.63 22.63 44.39 3.50
1608 2087 7.147549 CCCTAGGTCATCAATTTGACTAACCTA 60.148 40.741 22.51 22.51 44.39 3.08
1609 2088 8.265055 CCTAGGTCATCAATTTGACTAACCTAA 58.735 37.037 23.30 14.50 44.39 2.69
1610 2089 9.838339 CTAGGTCATCAATTTGACTAACCTAAT 57.162 33.333 23.30 11.47 44.39 1.73
1612 2091 9.614792 AGGTCATCAATTTGACTAACCTAATAC 57.385 33.333 19.83 2.64 44.39 1.89
1613 2092 9.391006 GGTCATCAATTTGACTAACCTAATACA 57.609 33.333 14.78 0.00 44.39 2.29
1684 2163 9.736023 AACTTCAGATGTTCTATTTTCAAACAC 57.264 29.630 0.00 0.00 35.87 3.32
1685 2164 9.125026 ACTTCAGATGTTCTATTTTCAAACACT 57.875 29.630 0.00 0.00 35.87 3.55
1734 2213 5.669164 TTAGGGTGATAAAATTGGCAACC 57.331 39.130 0.00 0.00 38.39 3.77
1735 2214 3.790126 AGGGTGATAAAATTGGCAACCT 58.210 40.909 0.00 0.00 43.35 3.50
1736 2215 4.941713 AGGGTGATAAAATTGGCAACCTA 58.058 39.130 0.00 0.00 46.13 3.08
1737 2216 4.956075 AGGGTGATAAAATTGGCAACCTAG 59.044 41.667 0.00 0.00 46.13 3.02
1738 2217 4.099419 GGGTGATAAAATTGGCAACCTAGG 59.901 45.833 7.41 7.41 35.26 3.02
1739 2218 4.709886 GGTGATAAAATTGGCAACCTAGGT 59.290 41.667 9.21 9.21 0.00 3.08
1740 2219 5.889289 GGTGATAAAATTGGCAACCTAGGTA 59.111 40.000 16.67 0.00 0.00 3.08
1741 2220 6.549736 GGTGATAAAATTGGCAACCTAGGTAT 59.450 38.462 16.67 0.83 0.00 2.73
1742 2221 7.722285 GGTGATAAAATTGGCAACCTAGGTATA 59.278 37.037 16.67 0.00 0.00 1.47
1743 2222 8.565416 GTGATAAAATTGGCAACCTAGGTATAC 58.435 37.037 16.67 8.74 0.00 1.47
1744 2223 7.442969 TGATAAAATTGGCAACCTAGGTATACG 59.557 37.037 16.67 5.52 0.00 3.06
1745 2224 2.607631 TTGGCAACCTAGGTATACGC 57.392 50.000 16.67 15.11 0.00 4.42
1746 2225 0.386476 TGGCAACCTAGGTATACGCG 59.614 55.000 16.67 3.53 0.00 6.01
1747 2226 0.386838 GGCAACCTAGGTATACGCGT 59.613 55.000 19.17 19.17 0.00 6.01
1748 2227 1.608590 GGCAACCTAGGTATACGCGTA 59.391 52.381 22.94 22.94 0.00 4.42
1749 2228 2.351157 GGCAACCTAGGTATACGCGTAG 60.351 54.545 24.78 11.28 0.00 3.51
1750 2229 2.351157 GCAACCTAGGTATACGCGTAGG 60.351 54.545 24.78 21.85 46.64 3.18
1751 2230 3.141398 CAACCTAGGTATACGCGTAGGA 58.859 50.000 25.95 14.03 45.08 2.94
1752 2231 2.772287 ACCTAGGTATACGCGTAGGAC 58.228 52.381 25.95 22.99 45.08 3.85
1753 2232 2.370189 ACCTAGGTATACGCGTAGGACT 59.630 50.000 25.95 22.11 45.08 3.85
1754 2233 3.181450 ACCTAGGTATACGCGTAGGACTT 60.181 47.826 25.95 21.88 45.08 3.01
1755 2234 3.188048 CCTAGGTATACGCGTAGGACTTG 59.812 52.174 24.78 19.23 45.08 3.16
1756 2235 2.648059 AGGTATACGCGTAGGACTTGT 58.352 47.619 24.78 8.30 0.00 3.16
1757 2236 3.808728 AGGTATACGCGTAGGACTTGTA 58.191 45.455 24.78 7.25 0.00 2.41
1758 2237 4.199310 AGGTATACGCGTAGGACTTGTAA 58.801 43.478 24.78 0.00 0.00 2.41
1759 2238 4.640201 AGGTATACGCGTAGGACTTGTAAA 59.360 41.667 24.78 0.00 0.00 2.01
1760 2239 4.735338 GGTATACGCGTAGGACTTGTAAAC 59.265 45.833 24.78 6.78 0.00 2.01
1761 2240 4.708726 ATACGCGTAGGACTTGTAAACT 57.291 40.909 24.78 0.00 0.00 2.66
1762 2241 2.669364 ACGCGTAGGACTTGTAAACTG 58.331 47.619 11.67 0.00 0.00 3.16
1763 2242 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41
1764 2243 3.243501 ACGCGTAGGACTTGTAAACTGAA 60.244 43.478 11.67 0.00 0.00 3.02
1765 2244 3.737266 CGCGTAGGACTTGTAAACTGAAA 59.263 43.478 0.00 0.00 0.00 2.69
1766 2245 4.387862 CGCGTAGGACTTGTAAACTGAAAT 59.612 41.667 0.00 0.00 0.00 2.17
1767 2246 5.618561 GCGTAGGACTTGTAAACTGAAATG 58.381 41.667 0.00 0.00 0.00 2.32
1768 2247 5.390567 GCGTAGGACTTGTAAACTGAAATGG 60.391 44.000 0.00 0.00 0.00 3.16
1769 2248 5.929992 CGTAGGACTTGTAAACTGAAATGGA 59.070 40.000 0.00 0.00 0.00 3.41
1770 2249 6.090898 CGTAGGACTTGTAAACTGAAATGGAG 59.909 42.308 0.00 0.00 0.00 3.86
1771 2250 5.316987 AGGACTTGTAAACTGAAATGGAGG 58.683 41.667 0.00 0.00 0.00 4.30
1772 2251 5.070685 GGACTTGTAAACTGAAATGGAGGT 58.929 41.667 0.00 0.00 0.00 3.85
1773 2252 6.043938 AGGACTTGTAAACTGAAATGGAGGTA 59.956 38.462 0.00 0.00 0.00 3.08
1774 2253 6.371825 GGACTTGTAAACTGAAATGGAGGTAG 59.628 42.308 0.00 0.00 0.00 3.18
1775 2254 6.838382 ACTTGTAAACTGAAATGGAGGTAGT 58.162 36.000 0.00 0.00 0.00 2.73
1776 2255 7.970102 ACTTGTAAACTGAAATGGAGGTAGTA 58.030 34.615 0.00 0.00 0.00 1.82
1777 2256 7.876582 ACTTGTAAACTGAAATGGAGGTAGTAC 59.123 37.037 0.00 0.00 0.00 2.73
1778 2257 7.549147 TGTAAACTGAAATGGAGGTAGTACT 57.451 36.000 0.00 0.00 0.00 2.73
1902 2382 3.486383 AGATAATACCCCCATGCGTTTG 58.514 45.455 0.00 0.00 0.00 2.93
1923 2403 9.925268 CGTTTGTATGGGAATTTATACTAACAC 57.075 33.333 20.92 8.70 41.35 3.32
2426 3188 9.310449 CACTAACATACATAGGGGTTCTATAGT 57.690 37.037 0.00 0.00 36.59 2.12
2788 4111 8.239038 TGGGTTATCTCTTAGTGTTATCTCTG 57.761 38.462 0.00 0.00 0.00 3.35
2810 4133 8.463055 TCTGCTACCCAAATATCCCTAAATAT 57.537 34.615 0.00 0.00 0.00 1.28
2811 4134 8.328758 TCTGCTACCCAAATATCCCTAAATATG 58.671 37.037 0.00 0.00 0.00 1.78
2883 4208 6.638873 GCAAGCTTTTTCTTAGGTTTCTCTTC 59.361 38.462 0.00 0.00 31.43 2.87
2952 4277 3.591695 TGCACATGCCCTAATATCCAA 57.408 42.857 0.49 0.00 41.18 3.53
2953 4278 3.908476 TGCACATGCCCTAATATCCAAA 58.092 40.909 0.49 0.00 41.18 3.28
3649 5297 6.267471 TGGATTGCTGAAAGTTTTATCCAGTT 59.733 34.615 0.00 0.00 35.34 3.16
3889 5540 3.370103 CGTAGGCTGTCCCTCCAAAATAA 60.370 47.826 0.00 0.00 44.96 1.40
4026 5698 8.892723 GTGTATTGGATTTGACTGAATGTGATA 58.107 33.333 0.00 0.00 0.00 2.15
4302 5974 7.442364 TGATATCAATGGAAAATCTCGGTTCTC 59.558 37.037 1.98 0.00 0.00 2.87
4529 6204 1.375326 GCCCCCTCAAAGTCTTCGT 59.625 57.895 0.00 0.00 0.00 3.85
4613 6294 1.138636 CGCATCTGTCACAGCTCTCG 61.139 60.000 0.00 0.00 0.00 4.04
4866 6547 3.712881 GTGCTGCCAACGGTCGTC 61.713 66.667 0.00 0.00 0.00 4.20
4933 6614 6.484288 TGGTCATAGTCCAAATCAGATTGTT 58.516 36.000 0.00 0.00 31.50 2.83
4956 6637 1.141019 GGAGTGATAAGCGGCGACA 59.859 57.895 12.98 0.00 0.00 4.35
5469 7171 7.505585 TGAGTTCTTCCTTGGTTATTGACAAAT 59.494 33.333 0.00 0.00 0.00 2.32
5595 7297 4.852138 GCACTAATATGTTGATGTGCAGG 58.148 43.478 17.71 0.00 46.64 4.85
5773 7475 0.322975 GCCCTCAGCTTGAACTCTCA 59.677 55.000 0.00 0.00 38.99 3.27
5796 7498 2.491152 GTGGATGCCATGCCAACG 59.509 61.111 0.00 0.00 35.28 4.10
5887 7589 6.442952 TGAATTTATTTTCCGACACACAAGG 58.557 36.000 0.00 0.00 0.00 3.61
5916 7618 7.549615 TGCTTGATCATTCTGAACTGATTAG 57.450 36.000 0.00 13.38 32.36 1.73
5923 7625 9.766277 GATCATTCTGAACTGATTAGTTTGTTC 57.234 33.333 4.16 0.46 46.79 3.18
5936 7638 4.434713 AGTTTGTTCAAAACGTTCAGCT 57.565 36.364 0.00 0.00 35.42 4.24
5938 7640 5.945155 AGTTTGTTCAAAACGTTCAGCTTA 58.055 33.333 0.00 0.00 35.42 3.09
5939 7641 5.798434 AGTTTGTTCAAAACGTTCAGCTTAC 59.202 36.000 0.00 0.00 35.42 2.34
5942 7644 4.034742 TGTTCAAAACGTTCAGCTTACCTC 59.965 41.667 0.00 0.00 0.00 3.85
5943 7645 3.135994 TCAAAACGTTCAGCTTACCTCC 58.864 45.455 0.00 0.00 0.00 4.30
5963 7665 3.322466 CAGGGCGTTCAGGAGGGT 61.322 66.667 0.00 0.00 0.00 4.34
5993 7695 1.091771 AGAATGTCGCGCCAAGGATG 61.092 55.000 0.00 0.00 0.00 3.51
6024 7726 5.005740 TGTACTTCTTCAGCATGCATTTCT 58.994 37.500 21.98 0.00 34.76 2.52
6028 7730 6.120905 ACTTCTTCAGCATGCATTTCTATCT 58.879 36.000 21.98 0.00 34.76 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.739466 GCCATCTGAATGCGAGTCAAA 59.261 47.619 0.00 0.00 0.00 2.69
57 58 2.711311 CCGTGCCATCTGAATGCG 59.289 61.111 0.00 0.00 0.00 4.73
74 75 6.978343 TGTATGTACTACATCTGGTTTTGC 57.022 37.500 4.90 0.00 39.88 3.68
102 104 2.073816 AGCGAAAATCAGGGTTACACG 58.926 47.619 0.00 0.00 0.00 4.49
120 122 3.194272 AACCGGCGCAAGTTCAAGC 62.194 57.895 10.83 0.00 41.68 4.01
298 308 0.984230 CCTTCAGCTTGTACTCCCCA 59.016 55.000 0.00 0.00 0.00 4.96
585 620 2.938451 GCGTCAATGATCTCATGGTGAA 59.062 45.455 0.00 0.00 36.56 3.18
640 675 0.324943 ACCTTCCGTGCATGTTAGCT 59.675 50.000 4.96 0.00 34.99 3.32
670 705 4.034975 GCTGCAGGAGAAGTGACAATATTC 59.965 45.833 17.12 0.00 0.00 1.75
937 972 5.801350 TCTTCTTTGCATCAGTATTTCGG 57.199 39.130 0.00 0.00 0.00 4.30
944 979 4.942483 CAGGAGAATCTTCTTTGCATCAGT 59.058 41.667 0.00 0.00 37.73 3.41
1358 1665 8.122481 TGGCCTCATATTCCTAGTTATGATAGA 58.878 37.037 3.32 0.00 35.04 1.98
1359 1666 8.200792 GTGGCCTCATATTCCTAGTTATGATAG 58.799 40.741 3.32 5.03 35.04 2.08
1536 2015 5.765677 TGAGAGAGAGGTAGTACATGCATAC 59.234 44.000 0.00 0.00 0.00 2.39
1550 2029 2.167487 GCCCTGTAAACTGAGAGAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
1551 2030 2.159310 CGCCCTGTAAACTGAGAGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
1552 2031 1.819288 CGCCCTGTAAACTGAGAGAGA 59.181 52.381 0.00 0.00 0.00 3.10
1553 2032 1.546476 ACGCCCTGTAAACTGAGAGAG 59.454 52.381 0.00 0.00 0.00 3.20
1554 2033 1.272490 CACGCCCTGTAAACTGAGAGA 59.728 52.381 0.00 0.00 0.00 3.10
1555 2034 1.714794 CACGCCCTGTAAACTGAGAG 58.285 55.000 0.00 0.00 0.00 3.20
1556 2035 0.320421 GCACGCCCTGTAAACTGAGA 60.320 55.000 0.00 0.00 0.00 3.27
1557 2036 0.602638 TGCACGCCCTGTAAACTGAG 60.603 55.000 0.00 0.00 0.00 3.35
1558 2037 0.882927 GTGCACGCCCTGTAAACTGA 60.883 55.000 0.00 0.00 0.00 3.41
1559 2038 1.574428 GTGCACGCCCTGTAAACTG 59.426 57.895 0.00 0.00 0.00 3.16
1560 2039 1.959226 CGTGCACGCCCTGTAAACT 60.959 57.895 28.16 0.00 0.00 2.66
1561 2040 0.945265 TACGTGCACGCCCTGTAAAC 60.945 55.000 37.35 0.00 44.43 2.01
1562 2041 0.945265 GTACGTGCACGCCCTGTAAA 60.945 55.000 37.35 11.10 44.43 2.01
1563 2042 1.373246 GTACGTGCACGCCCTGTAA 60.373 57.895 37.35 12.50 44.43 2.41
1564 2043 2.259204 GTACGTGCACGCCCTGTA 59.741 61.111 37.35 19.88 44.43 2.74
1565 2044 4.675029 GGTACGTGCACGCCCTGT 62.675 66.667 37.35 20.98 44.43 4.00
1570 2049 2.202703 CTAGGGGTACGTGCACGC 60.203 66.667 37.35 22.55 44.43 5.34
1571 2050 2.345760 ACCTAGGGGTACGTGCACG 61.346 63.158 35.99 35.99 45.32 5.34
1572 2051 3.704151 ACCTAGGGGTACGTGCAC 58.296 61.111 14.81 6.82 45.32 4.57
1658 2137 9.736023 GTGTTTGAAAATAGAACATCTGAAGTT 57.264 29.630 0.00 0.00 35.91 2.66
1659 2138 9.125026 AGTGTTTGAAAATAGAACATCTGAAGT 57.875 29.630 0.00 0.00 35.91 3.01
1708 2187 9.084533 GGTTGCCAATTTTATCACCCTAATATA 57.915 33.333 0.00 0.00 0.00 0.86
1709 2188 7.789349 AGGTTGCCAATTTTATCACCCTAATAT 59.211 33.333 0.00 0.00 0.00 1.28
1710 2189 7.129425 AGGTTGCCAATTTTATCACCCTAATA 58.871 34.615 0.00 0.00 0.00 0.98
1711 2190 5.963865 AGGTTGCCAATTTTATCACCCTAAT 59.036 36.000 0.00 0.00 0.00 1.73
1712 2191 5.337788 AGGTTGCCAATTTTATCACCCTAA 58.662 37.500 0.00 0.00 0.00 2.69
1713 2192 4.941713 AGGTTGCCAATTTTATCACCCTA 58.058 39.130 0.00 0.00 0.00 3.53
1714 2193 3.790126 AGGTTGCCAATTTTATCACCCT 58.210 40.909 0.00 0.00 0.00 4.34
1715 2194 4.099419 CCTAGGTTGCCAATTTTATCACCC 59.901 45.833 0.00 0.00 0.00 4.61
1716 2195 4.709886 ACCTAGGTTGCCAATTTTATCACC 59.290 41.667 9.21 0.00 0.00 4.02
1717 2196 5.914898 ACCTAGGTTGCCAATTTTATCAC 57.085 39.130 9.21 0.00 0.00 3.06
1718 2197 7.442969 CGTATACCTAGGTTGCCAATTTTATCA 59.557 37.037 22.11 0.00 0.00 2.15
1719 2198 7.572539 GCGTATACCTAGGTTGCCAATTTTATC 60.573 40.741 22.11 0.00 0.00 1.75
1720 2199 6.206048 GCGTATACCTAGGTTGCCAATTTTAT 59.794 38.462 22.11 5.71 0.00 1.40
1721 2200 5.528320 GCGTATACCTAGGTTGCCAATTTTA 59.472 40.000 22.11 0.00 0.00 1.52
1722 2201 4.337274 GCGTATACCTAGGTTGCCAATTTT 59.663 41.667 22.11 0.00 0.00 1.82
1723 2202 3.881089 GCGTATACCTAGGTTGCCAATTT 59.119 43.478 22.11 0.00 0.00 1.82
1724 2203 3.473625 GCGTATACCTAGGTTGCCAATT 58.526 45.455 22.11 0.00 0.00 2.32
1725 2204 2.547218 CGCGTATACCTAGGTTGCCAAT 60.547 50.000 22.11 9.64 0.00 3.16
1726 2205 1.202440 CGCGTATACCTAGGTTGCCAA 60.202 52.381 22.11 0.75 0.00 4.52
1727 2206 0.386476 CGCGTATACCTAGGTTGCCA 59.614 55.000 22.11 1.21 0.00 4.92
1728 2207 0.386838 ACGCGTATACCTAGGTTGCC 59.613 55.000 22.11 7.02 0.00 4.52
1729 2208 2.351157 CCTACGCGTATACCTAGGTTGC 60.351 54.545 22.11 17.41 0.00 4.17
1730 2209 3.058639 GTCCTACGCGTATACCTAGGTTG 60.059 52.174 22.11 9.15 0.00 3.77
1731 2210 3.142174 GTCCTACGCGTATACCTAGGTT 58.858 50.000 22.11 10.62 0.00 3.50
1732 2211 2.370189 AGTCCTACGCGTATACCTAGGT 59.630 50.000 20.91 20.57 0.00 3.08
1733 2212 3.051081 AGTCCTACGCGTATACCTAGG 57.949 52.381 20.91 18.03 0.00 3.02
1734 2213 3.812053 ACAAGTCCTACGCGTATACCTAG 59.188 47.826 20.91 8.56 0.00 3.02
1735 2214 3.808728 ACAAGTCCTACGCGTATACCTA 58.191 45.455 20.91 0.00 0.00 3.08
1736 2215 2.648059 ACAAGTCCTACGCGTATACCT 58.352 47.619 20.91 12.19 0.00 3.08
1737 2216 4.552166 TTACAAGTCCTACGCGTATACC 57.448 45.455 20.91 10.04 0.00 2.73
1738 2217 5.453587 CAGTTTACAAGTCCTACGCGTATAC 59.546 44.000 20.91 19.74 0.00 1.47
1739 2218 5.353956 TCAGTTTACAAGTCCTACGCGTATA 59.646 40.000 20.91 8.44 0.00 1.47
1740 2219 4.156556 TCAGTTTACAAGTCCTACGCGTAT 59.843 41.667 20.91 5.41 0.00 3.06
1741 2220 3.501828 TCAGTTTACAAGTCCTACGCGTA 59.498 43.478 19.40 19.40 0.00 4.42
1742 2221 2.294233 TCAGTTTACAAGTCCTACGCGT 59.706 45.455 19.17 19.17 0.00 6.01
1743 2222 2.937591 TCAGTTTACAAGTCCTACGCG 58.062 47.619 3.53 3.53 0.00 6.01
1744 2223 5.390567 CCATTTCAGTTTACAAGTCCTACGC 60.391 44.000 0.00 0.00 0.00 4.42
1745 2224 5.929992 TCCATTTCAGTTTACAAGTCCTACG 59.070 40.000 0.00 0.00 0.00 3.51
1746 2225 6.371825 CCTCCATTTCAGTTTACAAGTCCTAC 59.628 42.308 0.00 0.00 0.00 3.18
1747 2226 6.043938 ACCTCCATTTCAGTTTACAAGTCCTA 59.956 38.462 0.00 0.00 0.00 2.94
1748 2227 5.163088 ACCTCCATTTCAGTTTACAAGTCCT 60.163 40.000 0.00 0.00 0.00 3.85
1749 2228 5.070685 ACCTCCATTTCAGTTTACAAGTCC 58.929 41.667 0.00 0.00 0.00 3.85
1750 2229 6.935208 ACTACCTCCATTTCAGTTTACAAGTC 59.065 38.462 0.00 0.00 0.00 3.01
1751 2230 6.838382 ACTACCTCCATTTCAGTTTACAAGT 58.162 36.000 0.00 0.00 0.00 3.16
1752 2231 8.095169 AGTACTACCTCCATTTCAGTTTACAAG 58.905 37.037 0.00 0.00 0.00 3.16
1753 2232 7.970102 AGTACTACCTCCATTTCAGTTTACAA 58.030 34.615 0.00 0.00 0.00 2.41
1754 2233 7.233962 TGAGTACTACCTCCATTTCAGTTTACA 59.766 37.037 0.00 0.00 0.00 2.41
1755 2234 7.609056 TGAGTACTACCTCCATTTCAGTTTAC 58.391 38.462 0.00 0.00 0.00 2.01
1756 2235 7.672660 TCTGAGTACTACCTCCATTTCAGTTTA 59.327 37.037 0.00 0.00 34.11 2.01
1757 2236 6.497259 TCTGAGTACTACCTCCATTTCAGTTT 59.503 38.462 0.00 0.00 34.11 2.66
1758 2237 6.017192 TCTGAGTACTACCTCCATTTCAGTT 58.983 40.000 0.00 0.00 34.11 3.16
1759 2238 5.580998 TCTGAGTACTACCTCCATTTCAGT 58.419 41.667 0.00 0.00 34.11 3.41
1760 2239 6.531503 TTCTGAGTACTACCTCCATTTCAG 57.468 41.667 0.00 0.00 33.81 3.02
1761 2240 7.839705 AGTATTCTGAGTACTACCTCCATTTCA 59.160 37.037 10.69 0.00 30.91 2.69
1762 2241 8.240267 AGTATTCTGAGTACTACCTCCATTTC 57.760 38.462 10.69 0.00 30.91 2.17
1763 2242 7.839705 TGAGTATTCTGAGTACTACCTCCATTT 59.160 37.037 12.15 0.00 32.77 2.32
1764 2243 7.285858 GTGAGTATTCTGAGTACTACCTCCATT 59.714 40.741 12.15 0.00 32.77 3.16
1765 2244 6.773685 GTGAGTATTCTGAGTACTACCTCCAT 59.226 42.308 12.15 0.00 32.77 3.41
1766 2245 6.120905 GTGAGTATTCTGAGTACTACCTCCA 58.879 44.000 12.15 4.23 32.77 3.86
1767 2246 6.120905 TGTGAGTATTCTGAGTACTACCTCC 58.879 44.000 12.15 1.91 32.77 4.30
1768 2247 7.627298 TTGTGAGTATTCTGAGTACTACCTC 57.373 40.000 12.15 2.47 32.77 3.85
1769 2248 7.834681 TCATTGTGAGTATTCTGAGTACTACCT 59.165 37.037 12.15 0.00 32.77 3.08
1770 2249 7.997482 TCATTGTGAGTATTCTGAGTACTACC 58.003 38.462 12.15 7.14 32.77 3.18
1776 2255 9.896645 ACATTTATCATTGTGAGTATTCTGAGT 57.103 29.630 0.00 0.00 0.00 3.41
1948 2428 7.038659 CGAGAATGTGAAGGAGTCTTATTCTT 58.961 38.462 0.00 0.00 38.55 2.52
2477 3284 9.730420 TTGCAAAGTTTGATTAAGTTTAGAGAC 57.270 29.630 19.82 0.00 37.29 3.36
2788 4111 7.888546 ACACATATTTAGGGATATTTGGGTAGC 59.111 37.037 0.00 0.00 28.54 3.58
2953 4278 7.603784 GCAAGGAATAAACATGGACAGATTTTT 59.396 33.333 0.00 0.00 0.00 1.94
3649 5297 9.219603 CAAATAGACTAGTTTGTGGATCTTCAA 57.780 33.333 0.00 0.00 32.19 2.69
3966 5632 2.376518 ACCTTGAGAAAGGAGGCATGAA 59.623 45.455 11.39 0.00 42.62 2.57
4302 5974 1.203523 GCCTAGACAGTCACCACAGAG 59.796 57.143 2.66 0.00 0.00 3.35
4509 6184 1.677552 GAAGACTTTGAGGGGGCGA 59.322 57.895 0.00 0.00 0.00 5.54
4529 6204 5.663456 AGCTTGAACTTTGCAGAAAATTCA 58.337 33.333 0.00 0.00 0.00 2.57
4613 6294 8.718734 ACTTTGTCGACAAAAATATCTAACCTC 58.281 33.333 35.59 0.00 44.24 3.85
4787 6468 1.068055 GCTTCTGGCTGGAACACAATG 60.068 52.381 0.00 0.00 38.06 2.82
4866 6547 0.971386 AAGCCCAGCTCAAACCAATG 59.029 50.000 0.00 0.00 38.25 2.82
4933 6614 2.499205 CGCTTATCACTCCCGGCA 59.501 61.111 0.00 0.00 0.00 5.69
4973 6654 2.691011 TGCGTTTTCCAAAGTAGCCTTT 59.309 40.909 0.00 0.00 41.62 3.11
5563 7265 6.112734 TCAACATATTAGTGCCGAGTGATTT 58.887 36.000 0.00 0.00 0.00 2.17
5595 7297 3.115554 GGCATATTCAAACAACGCATCC 58.884 45.455 0.00 0.00 0.00 3.51
5773 7475 1.394266 GGCATGGCATCCACCGAATT 61.394 55.000 15.47 0.00 35.80 2.17
5796 7498 6.512415 CGATGTTCAAGATAAATTCTCCAGCC 60.512 42.308 0.00 0.00 31.78 4.85
5916 7618 5.004061 GGTAAGCTGAACGTTTTGAACAAAC 59.996 40.000 0.46 0.00 0.00 2.93
5923 7625 2.875933 TGGAGGTAAGCTGAACGTTTTG 59.124 45.455 0.46 0.00 0.00 2.44
5936 7638 0.035739 GAACGCCCTGTTGGAGGTAA 59.964 55.000 0.00 0.00 42.09 2.85
5938 7640 2.397413 CTGAACGCCCTGTTGGAGGT 62.397 60.000 0.00 0.00 42.09 3.85
5939 7641 1.672356 CTGAACGCCCTGTTGGAGG 60.672 63.158 0.00 0.00 42.09 4.30
5942 7644 1.672356 CTCCTGAACGCCCTGTTGG 60.672 63.158 0.00 0.00 42.09 3.77
5943 7645 1.672356 CCTCCTGAACGCCCTGTTG 60.672 63.158 0.00 0.00 42.09 3.33
5963 7665 1.890876 CGACATTCTTTCCCACACCA 58.109 50.000 0.00 0.00 0.00 4.17
5993 7695 3.987868 TGCTGAAGAAGTACACGATCAAC 59.012 43.478 0.00 0.00 0.00 3.18
6024 7726 2.291024 GGATCCTAGTCGAGGCCAGATA 60.291 54.545 5.01 0.00 46.25 1.98
6028 7730 0.032515 TTGGATCCTAGTCGAGGCCA 60.033 55.000 14.23 0.00 46.25 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.