AutoCloner

Multiple sequence alignment - TraesCS2B01G039300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G039300	chr2B	100.000	2975	0	0	1	2975	18092510	18089536	0.000000e+00	5494.0
1	TraesCS2B01G039300	chr2B	82.062	2347	341	47	1	2315	18124711	18122413	0.000000e+00	1929.0
2	TraesCS2B01G039300	chr2B	83.398	1283	183	18	730	1984	18069073	18067793	0.000000e+00	1162.0
3	TraesCS2B01G039300	chr2B	89.009	737	72	8	1	733	18072363	18071632	0.000000e+00	904.0
4	TraesCS2B01G039300	chr2B	87.793	639	40	16	1982	2595	18042663	18042038	0.000000e+00	713.0
5	TraesCS2B01G039300	chr2B	84.068	295	33	9	2641	2933	18042044	18041762	3.780000e-69	272.0
6	TraesCS2B01G039300	chr2A	88.307	1967	201	11	2	1943	12223333	12221371	0.000000e+00	2331.0
7	TraesCS2B01G039300	chr2A	87.248	1788	210	15	6	1781	12201721	12199940	0.000000e+00	2023.0
8	TraesCS2B01G039300	chr2A	90.061	976	63	19	2024	2975	12221275	12220310	0.000000e+00	1234.0
9	TraesCS2B01G039300	chr2A	74.332	1835	369	75	2	1782	12180908	12179122	0.000000e+00	686.0
10	TraesCS2B01G039300	chr2A	83.486	109	7	7	2650	2755	72938127	72938027	1.140000e-14	91.6
11	TraesCS2B01G039300	chr2D	87.384	1831	225	6	1	1828	11577927	11576100	0.000000e+00	2097.0
12	TraesCS2B01G039300	chr2D	87.464	1037	67	32	1847	2841	11576033	11575018	0.000000e+00	1136.0
13	TraesCS2B01G039300	chr2D	73.747	1836	380	69	1	1782	11552294	11550507	7.000000e-176	627.0
14	TraesCS2B01G039300	chr2D	84.615	143	13	8	2615	2755	2262415	2262550	1.860000e-27	134.0
15	TraesCS2B01G039300	chrUn	85.391	1855	240	19	1	1839	230602530	230604369	0.000000e+00	1895.0
16	TraesCS2B01G039300	chrUn	83.333	1818	265	27	6	1790	1981000	1979188	0.000000e+00	1644.0
17	TraesCS2B01G039300	chrUn	91.241	685	36	13	1847	2519	230604414	230605086	0.000000e+00	911.0
18	TraesCS2B01G039300	chrUn	82.764	615	64	26	2355	2940	1978399	1977798	7.360000e-141	510.0
19	TraesCS2B01G039300	chrUn	80.375	586	78	23	2368	2933	2055139	2054571	7.670000e-111	411.0
20	TraesCS2B01G039300	chrUn	95.000	100	3	1	2510	2607	230605413	230605512	3.970000e-34	156.0
21	TraesCS2B01G039300	chr1B	75.614	1833	361	56	2	1789	486480614	486482405	0.000000e+00	830.0
22	TraesCS2B01G039300	chr1D	75.245	1838	361	66	2	1789	363122902	363124695	0.000000e+00	787.0
23	TraesCS2B01G039300	chr6A	83.333	102	7	6	2657	2755	4707871	4707777	5.280000e-13	86.1
24	TraesCS2B01G039300	chr4A	81.905	105	11	5	2649	2753	741820996	741821092	6.830000e-12	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G039300	chr2B	18089536	18092510	2974	True	5494.000000	5494	100.0000	1	2975	1	chr2B.!!$R1	2974
1	TraesCS2B01G039300	chr2B	18122413	18124711	2298	True	1929.000000	1929	82.0620	1	2315	1	chr2B.!!$R2	2314
2	TraesCS2B01G039300	chr2B	18067793	18072363	4570	True	1033.000000	1162	86.2035	1	1984	2	chr2B.!!$R4	1983
3	TraesCS2B01G039300	chr2B	18041762	18042663	901	True	492.500000	713	85.9305	1982	2933	2	chr2B.!!$R3	951
4	TraesCS2B01G039300	chr2A	12199940	12201721	1781	True	2023.000000	2023	87.2480	6	1781	1	chr2A.!!$R2	1775
5	TraesCS2B01G039300	chr2A	12220310	12223333	3023	True	1782.500000	2331	89.1840	2	2975	2	chr2A.!!$R4	2973
6	TraesCS2B01G039300	chr2A	12179122	12180908	1786	True	686.000000	686	74.3320	2	1782	1	chr2A.!!$R1	1780
7	TraesCS2B01G039300	chr2D	11575018	11577927	2909	True	1616.500000	2097	87.4240	1	2841	2	chr2D.!!$R2	2840
8	TraesCS2B01G039300	chr2D	11550507	11552294	1787	True	627.000000	627	73.7470	1	1782	1	chr2D.!!$R1	1781
9	TraesCS2B01G039300	chrUn	1977798	1981000	3202	True	1077.000000	1644	83.0485	6	2940	2	chrUn.!!$R2	2934
10	TraesCS2B01G039300	chrUn	230602530	230605512	2982	False	987.333333	1895	90.5440	1	2607	3	chrUn.!!$F1	2606
11	TraesCS2B01G039300	chrUn	2054571	2055139	568	True	411.000000	411	80.3750	2368	2933	1	chrUn.!!$R1	565
12	TraesCS2B01G039300	chr1B	486480614	486482405	1791	False	830.000000	830	75.6140	2	1789	1	chr1B.!!$F1	1787
13	TraesCS2B01G039300	chr1D	363122902	363124695	1793	False	787.000000	787	75.2450	2	1789	1	chr1D.!!$F1	1787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
104	105	0.457851	GAGAGTGGATGTCCTCGTGG	59.542	60.0	0.0	0.0	36.82	4.94	F
1120	3723	0.387622	CATTGTGCAAGAGTTGGGCG	60.388	55.0	0.0	0.0	0.00	6.13	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1952	4674	0.030101	CTCCGACTCTTCATCCTCGC	59.97	60.000	0.0	0.0	0.0	5.03	R
2644	6044	2.770048	CCTCCCTCGCCCCTCAAT	60.77	66.667	0.0	0.0	0.0	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	9.918630	ATTCAGTTTATCAAATGAAACCTCTTG	57.081	29.630	6.60	0.00	36.41	3.02
56	57	6.097839	CCTCTTGGTGATGATGATTCCAAAAT	59.902	38.462	0.00	0.00	37.65	1.82
104	105	0.457851	GAGAGTGGATGTCCTCGTGG	59.542	60.000	0.00	0.00	36.82	4.94
111	112	0.460311	GATGTCCTCGTGGGTTCGAT	59.540	55.000	3.23	0.00	39.12	3.59
181	182	5.007724	GCCACCATTACAATAGCTAGTGTTC	59.992	44.000	29.53	7.65	35.90	3.18
393	394	7.440556	CGAGGTCATGAAAGATCAGTTGATATT	59.559	37.037	0.00	0.00	39.39	1.28
686	687	8.712228	AAATGGTAGAAAAGAAGAAGGTCAAT	57.288	30.769	0.00	0.00	0.00	2.57
708	709	1.829849	CAGGCCTCTGAGATGTGAGAA	59.170	52.381	0.00	0.00	43.49	2.87
779	3342	1.168714	GCCACCATTCTCGAGCTTTT	58.831	50.000	7.81	0.00	0.00	2.27
812	3390	7.066887	TGCGTGTGTTAGATTTGGATGAATATT	59.933	33.333	0.00	0.00	0.00	1.28
826	3404	8.096621	TGGATGAATATTGTGGTACTAAGGAA	57.903	34.615	0.00	0.00	0.00	3.36
835	3413	4.466370	TGTGGTACTAAGGAAGACCATCTG	59.534	45.833	0.00	0.00	43.61	2.90
880	3459	7.371159	GTTTACTTCACTTAGGTACCTACGTT	58.629	38.462	24.53	14.75	30.13	3.99
900	3479	4.269363	CGTTTATCTGGACGTGGAATTACC	59.731	45.833	0.00	0.00	39.54	2.85
937	3528	6.607198	AGAGATTGGGAAGTTGAAGTTTTTGA	59.393	34.615	0.00	0.00	0.00	2.69
1120	3723	0.387622	CATTGTGCAAGAGTTGGGCG	60.388	55.000	0.00	0.00	0.00	6.13
1195	3810	3.188460	GCAAGCTTTCGTGGAATCACTAA	59.812	43.478	0.00	0.00	41.53	2.24
1264	3885	3.242870	GCGTGATGTTTCAATGGATCTCC	60.243	47.826	0.00	0.00	32.48	3.71
1265	3886	3.313526	CGTGATGTTTCAATGGATCTCCC	59.686	47.826	0.00	0.00	32.48	4.30
1266	3887	3.633986	GTGATGTTTCAATGGATCTCCCC	59.366	47.826	0.00	0.00	32.48	4.81
1273	3894	0.403453	AATGGATCTCCCCGGGGAAT	60.403	55.000	41.16	33.33	44.66	3.01
1283	3904	2.035626	CGGGGAATGTTGGGTGCT	59.964	61.111	0.00	0.00	0.00	4.40
1335	3962	5.049129	GCACAAAGGCATCAGATTATCTACC	60.049	44.000	0.00	0.00	0.00	3.18
1378	4032	3.897505	TCATCTGTCACAACTCTCCAAGA	59.102	43.478	0.00	0.00	0.00	3.02
1430	4084	5.490357	AGGAGGATCTGAGATTCCTTGAAAA	59.510	40.000	9.40	0.00	42.48	2.29
1434	4088	7.237255	AGGATCTGAGATTCCTTGAAAAGTTT	58.763	34.615	0.00	0.00	44.25	2.66
1460	4114	3.109619	CTCTTCGGAATCTCGTGTTAGC	58.890	50.000	0.00	0.00	0.00	3.09
1602	4260	4.681942	GCCGAACTAGTTGTGCTCTATATG	59.318	45.833	14.14	0.00	0.00	1.78
1611	4269	6.878317	AGTTGTGCTCTATATGAGTTTGCTA	58.122	36.000	0.00	0.00	44.41	3.49
1627	4285	1.165270	GCTAGCCGCAAAAGAGGAAA	58.835	50.000	2.29	0.00	38.92	3.13
1630	4288	0.668535	AGCCGCAAAAGAGGAAACAC	59.331	50.000	0.00	0.00	0.00	3.32
1631	4289	0.668535	GCCGCAAAAGAGGAAACACT	59.331	50.000	0.00	0.00	0.00	3.55
1678	4339	2.825836	GCATGGAGAACCTGCCGG	60.826	66.667	0.00	0.00	35.70	6.13
1792	4456	1.146263	CATCCTAAGCGTCCCACCC	59.854	63.158	0.00	0.00	0.00	4.61
1793	4457	1.306654	ATCCTAAGCGTCCCACCCA	60.307	57.895	0.00	0.00	0.00	4.51
1796	4460	1.227263	CTAAGCGTCCCACCCATCG	60.227	63.158	0.00	0.00	0.00	3.84
1904	4625	3.256879	GGCCTTTCTTTCTTCCTTCCTTG	59.743	47.826	0.00	0.00	0.00	3.61
1933	4655	4.398319	TGCTCGTGATGAGGATATCTACA	58.602	43.478	3.55	3.97	45.38	2.74
1934	4656	4.216472	TGCTCGTGATGAGGATATCTACAC	59.784	45.833	3.55	5.68	45.38	2.90
1935	4657	4.380023	GCTCGTGATGAGGATATCTACACC	60.380	50.000	3.55	0.00	45.38	4.16
1936	4658	4.725490	TCGTGATGAGGATATCTACACCA	58.275	43.478	2.05	0.00	34.00	4.17
1937	4659	5.137551	TCGTGATGAGGATATCTACACCAA	58.862	41.667	2.05	0.00	34.00	3.67
1938	4660	5.241728	TCGTGATGAGGATATCTACACCAAG	59.758	44.000	2.05	3.67	34.00	3.61
1939	4661	5.565637	CGTGATGAGGATATCTACACCAAGG	60.566	48.000	2.05	0.00	34.00	3.61
1940	4662	4.840680	TGATGAGGATATCTACACCAAGGG	59.159	45.833	2.05	0.00	0.00	3.95
1944	4666	2.104281	GGATATCTACACCAAGGGCGTT	59.896	50.000	2.05	0.00	0.00	4.84
1952	4674	2.620112	CCAAGGGCGTTGACAGCAG	61.620	63.158	20.64	0.00	38.60	4.24
2002	4748	4.323417	TGCAGGTTAGATACAGTTTGGTG	58.677	43.478	0.00	0.00	0.00	4.17
2016	4762	3.955551	AGTTTGGTGTCCCGTTAAAATGT	59.044	39.130	0.00	0.00	0.00	2.71
2017	4763	4.403113	AGTTTGGTGTCCCGTTAAAATGTT	59.597	37.500	0.00	0.00	0.00	2.71
2019	4765	6.265876	AGTTTGGTGTCCCGTTAAAATGTTAT	59.734	34.615	0.00	0.00	0.00	1.89
2022	4809	5.106634	TGGTGTCCCGTTAAAATGTTATTCG	60.107	40.000	0.00	0.00	0.00	3.34
2030	4817	9.609950	CCCGTTAAAATGTTATTCGTTTAAAGA	57.390	29.630	0.00	0.00	34.59	2.52
2045	4832	6.908284	TCGTTTAAAGATTGCAAACTGTGTAC	59.092	34.615	10.27	6.57	31.47	2.90
2162	5076	5.963176	ACACACATCTGCAAAACATATGA	57.037	34.783	10.38	0.00	36.59	2.15
2163	5077	6.519679	ACACACATCTGCAAAACATATGAT	57.480	33.333	10.38	0.00	36.59	2.45
2164	5078	6.327154	ACACACATCTGCAAAACATATGATG	58.673	36.000	10.38	6.63	36.59	3.07
2321	5308	6.428159	TGAGTTTCTTTCTAGGCTTAAGCAAG	59.572	38.462	27.83	22.56	44.36	4.01
2385	5374	4.793216	CCTTTCATAGTTTAATGCGTGTGC	59.207	41.667	0.00	0.00	43.20	4.57
2644	6044	1.276989	GTTTCTGTCGGTGGGTGGATA	59.723	52.381	0.00	0.00	0.00	2.59
2653	6053	0.178990	GTGGGTGGATATTGAGGGGC	60.179	60.000	0.00	0.00	0.00	5.80
2683	6083	1.527370	GGGAACTCCGCCTATGCTT	59.473	57.895	0.00	0.00	36.71	3.91
2779	6180	7.326789	CCTTATATGGCTTGAAATTTGTATGCG	59.673	37.037	0.00	0.00	0.00	4.73
2856	6260	9.114952	TGTTCTTTTCTTTTTCTTTTTGGTTGT	57.885	25.926	0.00	0.00	0.00	3.32
2878	6282	6.759272	TGTACTGTCATATTCCTAGCAATCC	58.241	40.000	0.00	0.00	0.00	3.01
2898	6302	8.416329	GCAATCCTCCATCAATTATACAGTTTT	58.584	33.333	0.00	0.00	0.00	2.43
2910	6314	8.531146	CAATTATACAGTTTTGAGGGACCAATT	58.469	33.333	0.00	0.00	0.00	2.32
2957	6361	7.158021	ACTGTCTGTTTTGTCCAATTTCAAAA	58.842	30.769	8.11	8.11	39.93	2.44

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	6.400568	ACAACATTTTGGAATCATCATCACC	58.599	36.000	0.00	0.00	37.00	4.02
56	57	9.601971	GAGCAAATATACGTTTAAAGAACAACA	57.398	29.630	0.00	0.00	0.00	3.33
104	105	1.728971	CTGCAGACACTTCATCGAACC	59.271	52.381	8.42	0.00	0.00	3.62
111	112	5.675684	TCAATATACCTGCAGACACTTCA	57.324	39.130	17.39	0.00	0.00	3.02
161	162	5.237344	GCCAGAACACTAGCTATTGTAATGG	59.763	44.000	26.96	26.96	35.78	3.16
181	182	3.126001	TGTTTTCTGACCACTAGCCAG	57.874	47.619	0.00	0.00	0.00	4.85
260	261	4.536295	TCATCTCATCTACACTGGGGTA	57.464	45.455	0.00	0.00	0.00	3.69
393	394	2.799017	AGCTTTCAGCAATCCACATCA	58.201	42.857	0.00	0.00	45.56	3.07
429	430	6.635755	ACCTCAAAGAGACTAGTATTTGCTC	58.364	40.000	17.00	10.31	33.64	4.26
627	628	0.400213	ACGGACAATGCCCTCTGAAA	59.600	50.000	0.00	0.00	0.00	2.69
686	687	0.041684	TCACATCTCAGAGGCCTGGA	59.958	55.000	12.00	6.79	40.76	3.86
708	709	5.721960	ACAACAGACCTCACTTGTCCTATAT	59.278	40.000	0.00	0.00	33.09	0.86
779	3342	5.289675	CCAAATCTAACACACGCAAAACAAA	59.710	36.000	0.00	0.00	0.00	2.83
812	3390	4.466370	CAGATGGTCTTCCTTAGTACCACA	59.534	45.833	0.00	0.00	44.40	4.17
826	3404	3.307339	GCTCTTGAAGGTTCAGATGGTCT	60.307	47.826	0.00	0.00	38.61	3.85
835	3413	0.962855	GCCCCAGCTCTTGAAGGTTC	60.963	60.000	0.00	0.00	31.91	3.62
880	3459	3.700539	TCGGTAATTCCACGTCCAGATAA	59.299	43.478	0.00	0.00	35.57	1.75
900	3479	1.002366	CAATCTCTTCGGGCAACTCG	58.998	55.000	0.00	0.00	0.00	4.18
921	3512	6.866248	TCAACACCTTCAAAAACTTCAACTTC	59.134	34.615	0.00	0.00	0.00	3.01
937	3528	1.070601	GCCAGGCAAAATCAACACCTT	59.929	47.619	6.55	0.00	0.00	3.50
1120	3723	0.035317	TCCCTCAGTGTGTGCATGTC	59.965	55.000	0.00	0.00	0.00	3.06
1195	3810	3.512724	CACTGGATCTTTGGCATTTTCCT	59.487	43.478	0.00	0.00	0.00	3.36
1264	3885	2.362375	CACCCAACATTCCCCGGG	60.362	66.667	15.80	15.80	44.88	5.73
1265	3886	3.068064	GCACCCAACATTCCCCGG	61.068	66.667	0.00	0.00	0.00	5.73
1266	3887	2.035626	AGCACCCAACATTCCCCG	59.964	61.111	0.00	0.00	0.00	5.73
1283	3904	3.003173	CCCGGAGACTTGCAGGGA	61.003	66.667	0.73	0.00	44.70	4.20
1335	3962	0.474184	AGGGATTCCATGCCGGTAAG	59.526	55.000	1.90	0.00	46.65	2.34
1378	4032	5.396436	GCACAACCCCTACACTTATGACTAT	60.396	44.000	0.00	0.00	0.00	2.12
1430	4084	2.569404	AGATTCCGAAGAGCTGGAAACT	59.431	45.455	7.29	7.31	46.65	2.66
1434	4088	0.741326	CGAGATTCCGAAGAGCTGGA	59.259	55.000	0.00	0.00	0.00	3.86
1460	4114	2.556287	GCCTTTGGTTGTCGCTCG	59.444	61.111	0.00	0.00	0.00	5.03
1611	4269	0.668535	GTGTTTCCTCTTTTGCGGCT	59.331	50.000	0.00	0.00	0.00	5.52
1627	4285	3.216292	GCCACCGTTGCCAAGTGT	61.216	61.111	0.00	0.00	0.00	3.55
1630	4288	2.625823	AATCGCCACCGTTGCCAAG	61.626	57.895	0.00	0.00	35.54	3.61
1631	4289	2.596046	AATCGCCACCGTTGCCAA	60.596	55.556	0.00	0.00	35.54	4.52
1832	4496	0.801872	TGCATGGAACGGAAATGACG	59.198	50.000	0.00	0.00	37.36	4.35
1836	4529	1.184431	TGCATGCATGGAACGGAAAT	58.816	45.000	27.34	0.00	0.00	2.17
1904	4625	2.035193	TCCTCATCACGAGCATCTAAGC	59.965	50.000	0.00	0.00	40.78	3.09
1926	4648	2.093869	GTCAACGCCCTTGGTGTAGATA	60.094	50.000	0.00	0.00	46.56	1.98
1927	4649	0.981183	TCAACGCCCTTGGTGTAGAT	59.019	50.000	0.00	0.00	46.56	1.98
1928	4650	0.034337	GTCAACGCCCTTGGTGTAGA	59.966	55.000	0.00	0.00	46.56	2.59
1929	4651	0.250124	TGTCAACGCCCTTGGTGTAG	60.250	55.000	0.00	0.00	46.56	2.74
1930	4652	0.250124	CTGTCAACGCCCTTGGTGTA	60.250	55.000	0.00	0.00	46.56	2.90
1932	4654	2.908073	GCTGTCAACGCCCTTGGTG	61.908	63.158	0.00	0.00	39.41	4.17
1933	4655	2.594592	GCTGTCAACGCCCTTGGT	60.595	61.111	0.00	0.00	0.00	3.67
1934	4656	2.594303	TGCTGTCAACGCCCTTGG	60.594	61.111	0.00	0.00	0.00	3.61
1935	4657	2.949106	CTGCTGTCAACGCCCTTG	59.051	61.111	0.00	0.00	0.00	3.61
1936	4658	2.980233	GCTGCTGTCAACGCCCTT	60.980	61.111	0.00	0.00	0.00	3.95
1939	4661	3.782244	CTCGCTGCTGTCAACGCC	61.782	66.667	0.00	0.00	32.30	5.68
1940	4662	3.782244	CCTCGCTGCTGTCAACGC	61.782	66.667	0.00	0.00	32.30	4.84
1944	4666	0.108472	CTTCATCCTCGCTGCTGTCA	60.108	55.000	0.00	0.00	0.00	3.58
1952	4674	0.030101	CTCCGACTCTTCATCCTCGC	59.970	60.000	0.00	0.00	0.00	5.03
2002	4748	8.947304	TTAAACGAATAACATTTTAACGGGAC	57.053	30.769	0.00	0.00	0.00	4.46
2016	4762	8.963130	CACAGTTTGCAATCTTTAAACGAATAA	58.037	29.630	7.31	0.00	38.84	1.40
2017	4763	8.132362	ACACAGTTTGCAATCTTTAAACGAATA	58.868	29.630	7.31	0.00	38.84	1.75
2019	4765	6.326375	ACACAGTTTGCAATCTTTAAACGAA	58.674	32.000	7.31	0.00	38.84	3.85
2022	4809	9.166126	GTAGTACACAGTTTGCAATCTTTAAAC	57.834	33.333	7.31	4.92	35.19	2.01
2179	5099	2.826128	AGTGAGTCTTTGGTCGATGCTA	59.174	45.455	0.00	0.00	0.00	3.49
2321	5308	9.429109	TTTTAATATACTCCCTCCCCATTTTTC	57.571	33.333	0.00	0.00	0.00	2.29
2360	5349	4.700213	ACACGCATTAAACTATGAAAGGCT	59.300	37.500	0.00	0.00	0.00	4.58
2379	5368	5.688823	TGAATGAGAAACAATAAGCACACG	58.311	37.500	0.00	0.00	0.00	4.49
2644	6044	2.770048	CCTCCCTCGCCCCTCAAT	60.770	66.667	0.00	0.00	0.00	2.57
2653	6053	3.400054	GTTCCCCCACCTCCCTCG	61.400	72.222	0.00	0.00	0.00	4.63
2856	6260	6.211584	GGAGGATTGCTAGGAATATGACAGTA	59.788	42.308	9.72	0.00	0.00	2.74
2878	6282	7.775093	TCCCTCAAAACTGTATAATTGATGGAG	59.225	37.037	13.35	0.00	39.83	3.86
2910	6314	9.442047	ACAGTTAAACATTGAAATCCAAACAAA	57.558	25.926	0.00	0.00	38.43	2.83
2933	6337	7.593875	TTTTGAAATTGGACAAAACAGACAG	57.406	32.000	11.63	0.00	39.81	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.